dan_3328

Name	Class	Family	Strand
Helitron-2N1_DVir	RC	Helitron	-
AT_rich	Low_complexity	Low_complexity	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCTTGGAATATATATGGACCAAAGTTTAAGCCTTAATTTACAAGATACCGGTAAATTATATAATAATAATTATAATAGTTAATATCAATTTATAAATTACTTACATATTTTTATACCCTTGCAAAGATTATTATAATATTGGTCAAAAGTGTGCAACGCTGTAAATGAGATATCTTCTACCCCATAAAGTTATATATACATATATGTTAGGGCGGTTCGATTTGTAGGGGGTCAAAAAAATCGCCTAGGCA *******************************************************************************************************.............(((((..(((((.........))))).......)))))..*******************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V039 embryo	V055 head	M058 embryo	M044 female body	V105 male body
............TATGGACCAAAGTTTAAGCCTTAATT.....................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................TAAATGAGATATCTTGTACGACA...................................................................	23	3	1	1.00	1	0	1	0	0	0
..........TATATGGACCAAAGTTTAAGCCT..........................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................ATGTGTCGGCGGTTCGATT.............................	19	3	19	0.79	15	0	0	0	10	5
.....................................................................................................................................................................................................AGATATATGTTAGAGCGGCT..................................	20	3	4	0.25	1	0	1	0	0	0
GCTTGGAATAGATATGGAT........................................................................................................................................................................................................................................	19	2	5	0.20	1	1	0	0	0	0
.........................................................................................................TATTTTTATACCCTTGCAAAG.............................................................................................................................	21	0	6	0.17	1	0	0	1	0	0
.....................................................................................................................................................................................................ACATATGTTTTAGGGCGGTA..................................	20	3	9	0.11	1	1	0	0	0	0
..............................................................................................................................................................................................TATATATACATCTATGTAAGGC.......................................	22	3	14	0.07	1	0	0	0	1	0
.............................................................................................................................................................................................................................TTGTAGGGGGTCAAAAAAATCGCC......	24	0	20	0.05	1	0	0	0	0	1
............................................................................................................................................................................................................................TTTGTAGGGGGTCAAAAAAATCGCC......	25	0	20	0.05	1	0	0	1	0	0
...........................................................................................................................................................................AACTTGTACCCCATATAGTT............................................................	20	3	20	0.05	1	1	0	0	0	0
............................................................................................................................................................................................................TGTGTCGGCGGTTCGATTT............................	19	3	20	0.05	1	0	0	0	0	1
.........................................................................................................................................ATTGGTCAAAAGTGTGCAACG.............................................................................................	21	0	20	0.05	1	0	0	0	1	0

CGAACCTTATATATACCTGGTTTCAAATTCGGAATTAAATGTTCTATGGCCATTTAATATATTATTATTAATATTATCAATTATAGTTAAATATTTAATGAATGTATAAAAATATGGGAACGTTTCTAATAATATTATAACCAGTTTTCACACGTTGCGACATTTACTCTATAGAAGATGGGGTATTTCAATATATATGTATATACAATCCCGCCAAGCTAAACATCCCCCAGTTTTTTTAGCGGATCCGT *******************************************************************************************.............(((((..(((((.........))))).......)))))..*******************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V055 head
................................................................................CCATAGTTAAGTATTTAATGA......................................................................................................................................................	21	3	15	0.07	1	1	0	0
..............................................................................................................................TAATAATATTATAACAATTTT........................................................................................................	21	2	16	0.06	1	1	0	0
...........................................................................................................................TGATAATAATATTATAACAAGT..........................................................................................................	22	3	19	0.05	1	1	0	0
...............................................................................................................................................................................................................ATCCCGCCAAGCTAAACATCCCCCAGTTT...............	29	0	20	0.05	1	0	1	0
..................................................................................................................................................................................................................................CCCCCAGTTTTTTTAGCGGATCCGT	25	0	20	0.05	1	1	0	0
............................................................................................................................................CCAGTTTTCACACGTTGCGAC..........................................................................................	21	0	20	0.05	1	1	0	0
.................................................................................................................................................................................................................CCCGCCAAGCTAAACATCCCCCAGTTTTT.............	29	0	20	0.05	1	1	0	0
...................................................................................................................................................................................................................CGCCAAGCTAAACATCCCCCAGTTT...............	25	0	20	0.05	1	0	1	0
.................................................................................................................................................................................................................CCCGCCAAGCTAAACATCCCCCAGTT................	26	0	20	0.05	1	0	1	0
................................................................................................................................................................................................................TCCCGCCAAGCTAAACATCCCCCAGT.................	26	0	20	0.05	1	0	1	0
.......................................................................................................................................................CCGTTGCGACATATACTAT.................................................................................	19	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13417:3342671-3342921 -	dan_3328	GCTTGG---------AA--TATATAT------------------GGACCAAAGTTTAAGCCTTAATTTACAAGAT-----------------------AC--------------------------------------------------------------------------------------------CGGTAAATTATATAA-TAATAATTATAATAGTTAA------------TATC-AATTTA---------T--------AAAT----------------TACTTA-------------CATATTTTTATACCCTTGCAA------AGATTA-T---TATAATATTGGTCAAAAGTGTGCAACGCTGTAAATGAGATATCTTCTACCCCATAAAGTT-------------------ATATATACATATA--TGTTAGGG----CGGT-------------TCGATTTGTAGGGGGTCAAAAAAATCGCCTAGGCA
droBip1	scf7180000396032:19803-19996 +		TTGGAAAACATTGGGAT--TAATTTTGTATAT------------CATAAAA----------------TAAAAGTT-------------------AAG------------------------------------------------------------TT-----------------------------------------TATACA-ATATATAAAAATATAATTAA------------A-TC-ATTATT---------T--------AGGA----------------A----A----------CTTG--TTTTTTATACCCTTGCAG------AGGGTA-T---TATAATTTTGGTCAAAAGTGTGCAACGCACTGAAGGAGACATCTCCGACCCATAGATATAG------------------ACAT--------A--TTCTTTA---------------------------------------------------------
droKik1	scf7180000302592:2075190-2075381 +		ATTAGA---------AA--TATATAT------------------TGAAAAAAAAAAACATAAT----AATAAAAT-----------------------ATCTGAAAAGCTGCAT---TTTATTTATT----------------------------------------------------------------------------------TAATTTTATAATTATTATAT----TTATAATA-C-------------------------------------------------GA-------------CCTATTTTTATACCCTTGCAG--------GGTA-T---TATAATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTAT------------------ATAT--------A--T---------------------------------------------------------------
droFic1	scf7180000454113:2968977-2969188 +		GCTTGA---------AGAATATACTT------------------AGATCTATTTAATAACTTT----TATAGGTTATTAAAAAACAAAGAAATTAAAATTAT-----------A---TTCCTAGA------------------------------------------------------------------------------------------------------------------CTTC-TATGAA-----------------AAGAT----------------TATTATTATATAT---TA-TT-TATTTTATACCCTTGCAGAGCAAAAGGGTA-T---TATAATTTTAGTCAGAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTAT------------------ATAT--------ATAT---------------------------------------------------------------
droEle1	scf7180000491201:202428-202621 -		AGTTGG---------AA--TAAACAT------------------AAATAAA--TAAAAGTTCAAGCCATT------------------------------------------------TCAGATGGATGGGATTTTTCTGACGACGCC------------------------------------------------AAAT--------------A------------------------TATC-ACTTTG---------T--------GA-------------------------ATTTATTTACTTGTTATTTTTATACCCTTGCAG------AGGGTA-T---TATAATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTAT------------------ATAT--------A--T---------------------------------------------------------------
droRho1	scf7180000761193:9877-10117 -		GTTGGG---------AT--TATTTAT------------------GGGTTTCATTTTTG---------------------------------------------------------------------------------------------------GCCAATCAATTCGACTTACCAAATTTCATAAGAATCGGCGGACTATATA--------ATATTATTTT------------------C-CATTTA------------------GA-------------------------ATCTGTCATCGATTAATTTTTATACCCTTGCAG------AGGGTA-T---TATAATTTTGGTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAATAC-------------------TGATGGACGTTGA--TGCACT-TCGAGCAGTACAAACA----------------------------AGTGGCCC----A
droBia1	scf7180000300983:1269-1497 -		GCTTGA---------AA--TACATAT------------------GGTTGAGGGC--------------------------------------------------------------------------------TGTAAGACTATGCTTATTAATTGTTTATACAAATTTTATAATGAAATTTTATAAG----------------------------------CATA------------TG----GTAT---------TTTGT-TGGATA--ATAAT-----------AAATTA-------------ATTATTTGTATATCCTTGCAG------AGGGTA-T---AATGATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGATACTTTTCCAACCCCATAAAGTAT------------------ATAT--------A--TTCTTGAT----CAA-----ACG----AGTCGATCT----------------------------
droTak1	scf7180000410727:1689-1904 -		TTTTTG---------TG--CGTACCT------------------TGATCAGGGTAAAAGCGCGTGCCGATCGGAC-----------------------GT--------------------------------------------------------------------------------------------CTATATCTTATACTT-CCATATTAACAATAGTTAAATGCTGTAAAAATA--------------------------------------------------------------------TCCTTTTATACCCTTGCAG------AGGGTA-T---TATAATTTTGGTCAGAAGTTTGTAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTAT------------------ATAT--------A--TTCTTGAT----CAGGATCAATA----------------------------GGGTGTCG----A
droEug1	scf7180000409528:387353-387538 -		ATTGTC---------AT--AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTATTTTTAA------------TATA-TATTTATAGAAAATTTTGTACGGATA--AAACT-----------GGATAA-------------GTTATTTTGATACCCTTGCAG------AGGGTA-T---TATAATTTTGGTCA---GTTTGTAATGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTAT------------------ATACATATGTATA--TTCTTGAT----CAGTATCAATA----------------------------GGGG---------
dm3	chrX:15894697-15894750 -		GCTTGG---------AA--TGTTTGT------------------CGAACAAAGTACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGAATTCACAAGACAC------------------TGGT--------A--A---------------------------------------------------------------
droSim2	3l:6034111-6034208 +		TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCCTTGCAG------AGGGTTATACCTATGATATCAGTCAGAAGTTTGCAACGCAATGAGGGAGACATGTGCAACCAAATAAAGTTT------------------ATATGTATAT--A--T---------------------------------------------------------------
droSec2	scaffold_6:2089318-2089436 -		TATTTC---------TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTTTATACCATTTCAG------AGGTTG-T---ATTATTTCCAGTCCAAAGTATGCAACGCATTGAGGGAGACATTTGCAACCATATAAAAAA-------------------ATATGTATATATA--TTCCTGAT----CGGT------------------------------------------------
droYak3	v2_chr3L_random_258:24509-24669 -		AAATTA---------AA--TGAGA---------------------------------------------------------------------------------------T--AAG-TAGTATAACTGAAA----------------------------------------------------------------------------------T----------AT------------TATC-GATCT---------TTTGT-TGGGT------------------------A-------------ATTGTTACTGTACCCTTTCAG------AGTGTA-T---TTTTAAATTCGTCAGAAGTTTGCAACGCAGTAAGGAGGACATTCGCGACCAAATAAAGTAT------------------ATAAATATATATA--TGTTA-----------------------------------------------------------
droEre2	scaffold_4512:814418-814616 +		ATTCCG---------AT--AATTCTTATATAT------------------A--GA--AATCTTAAAGTTTAATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-C-------------------------------------------------AA-------------AT-TATTTCATATCCTTACAG------AGGATA-T---ATTTATTTTGGTCAAAAGTTTGCCACGCAGTAAAGGATACATTTTTGACCATATAAGTTTAGTATTAAGAGCCGAGTCGATATAGACATATA--TTCTGGAT----CAGGATAAGTAGACGATTCGATCTG---------------------------
dp5	Unknown_group_180:25331-25543 +		AAAATA----TGTTGAT--CAATCTT---TACTGTAAACTTAATTGAAAAAAGAAAATATCTT----TATGCACT-----------------------AAC---------------------------------------------------------------------------------------------------TAAACA-ATATGTAATAAGATAATTAA------------AC-CAAATTTA--------------------CC---CAGGTCCTAATATTACTAG-------------TATGTTTTCATACCCTTT---------------------TTGATTTTGGTCAAGTGTTTGCAATGAACAAAAGGCTACACATCCGACCTCACAACATT-------------------GTATATACATATA--T---------------------------------------------------------------
droPer2	scaffold_85:169346-169406 -		GTTGGG---------AA--TGTTTGT------------------CGAACAAAGTATAAATCATAATGCACAAGAC-----------------------AC--------------------------------------------------------------------------------------------CGGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTAT--------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004949:399086-399324 +		AGTTGG---------AA--TTTACAT------------------GGCTGTAGT-GCACC---------------------------------------------------------------------------TACA-AGCTAAACCTACTATCTACTAC-------------------------------CGCCTAAACACAAAA-TGGCACTTAAGATAATT------------------------------------------------------TTTTAATATTT--------------CTTA-TTTTATTATACCCTTGCAA----AAAGGGTA-T---ATTAATTTTGGTCAGAAGTGTGCAACGCATAGAAGGAAGCATCTCCGACCGTATAAGGTAT------------------AT---TGTATATA--TTCTGGAT----CAGCGCAAACT---------TCTCGTAGACCGT---AA-GAAA---------
droVir3	scaffold_12958:1562683-1562885 +		TTGGAG-------------TATAAAA------------------ATACAAA----------AT----TATTTAAG-----------------------GTATAAAAATTTACAA---TTCGTTTATT-------------------------------------------------------------------------TGTAAAA-AAAAAATTTTTTT--TTTT------------TTTC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATATATTTATACCCTTGCAG------AGGGTA-T---TATAATTTTGTCGTGAAATGTGTAACGCATAGAAGGAGACATCTCCGACCCCATAAAGTAT------------------ATAT--------A--TTCTTA----------------------------------------------------------
droMoj3	scaffold_6328:3366980-3367041 -		GTTTGT---------TA--TGTTTAG------------------CGAGCAGAATACTAATCACAATGTACAGGAT-----------------------AC--------------------------------------------------------------------------------------------GGGTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGATA-------------------------------------------------------------------------------------------------------
droGri2	scaffold_14906:10570954-10571106 +		TTACTT---------TA--CGCAG---------------------------------------------------------------------------------------CG-ATGTTTGATTATTTTAAA----------------------------------------------------------------------------------TAACAGCAATCATAT----TTAAAATA-T-------------------------------------------------------------TTTG--TTTTTTCTACCCTTGTAG------AGTGTA-T---TATAATTCTGTTTTCATGTTTGCAACGCATTGAAGGAGACGCCTCCGACCCCATAAGATTG------------------ATAT--------A--T---------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GCTTGG---------AA--TATATAT------------------GGACCAAAGTTTAAGCCTTAATTTACAAGAT-----------------------AC--------------------------------------------------------------------------------------------CGGTAAATTATATAA-TAATAATTATAATAGTTAA------------TATC-AATTTA---------T--------AAAT----------------TACTTA-------------CATATTTTTATACCCTTGCAA------AGATTA-T---TATAATATTGGTCAAAAGTGTGCAACGCTGTAAATGAGATATCTTCTACCCCATAAAGTT-------------------ATATATACATATA--TGTTAGGG----CGGT-------------TCGATTTGTAGGGGGTCAAAAAAATCGCCTAGGCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................TAT------------------GGACCAAAGTTTAAGCCTTAATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.....................TATAT------------------GGACCAAAGTTTAAGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................TATTTTTATACCCTTGCAA------AG.......................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGGGGGTCAAAAAAATCGCC......	24	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAGGGGGTCAAAAAAATCGCC......	25	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................ATTGGTCAAAAGTGTGCAACG...................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droBip1

TTGGAAAACATTGGGAT--TAATTTTGTATAT------------CATAAAA----------------TAAAAGTT-------------------AAG------------------------------------------------------------TT-----------------------------------------TATACA-ATATATAAAAATATAATTAA------------A-TC-ATTATT---------T--------AGGA----------------A----A----------CTTG--TTTTTTATACCCTTGCAG------AGGGTA-T---TATAATTTTGGTCAAAAGTGTGCAACGCACTGAAGGAGACATCTCCGACCCATAGATATAG------------------ACAT--------A--TTCTTTA---------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTAGA---------AA--TATATAT------------------TGAAAAAAAAAAACATAAT----AATAAAAT-----------------------ATCTGAAAAGCTGCAT---TTTATTTATT----------------------------------------------------------------------------------TAATTTTATAATTATTATAT----TTATAATA-C-------------------------------------------------GA-------------CCTATTTTTATACCCTTGCAG--------GGTA-T---TATAATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTAT------------------ATAT--------A--T---------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCTTGA---------AGAATATACTT------------------AGATCTATTTAATAACTTT----TATAGGTTATTAAAAAACAAAGAAATTAAAATTAT-----------A---TTCCTAGA------------------------------------------------------------------------------------------------------------------CTTC-TATGAA-----------------AAGAT----------------TATTATTATATAT---TA-TT-TATTTTATACCCTTGCAGAGCAAAAGGGTA-T---TATAATTTTAGTCAGAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTAT------------------ATAT--------ATAT---------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGTTGG---------AA--TAAACAT------------------AAATAAA--TAAAAGTTCAAGCCATT------------------------------------------------TCAGATGGATGGGATTTTTCTGACGACGCC------------------------------------------------AAAT--------------A------------------------TATC-ACTTTG---------T--------GA-------------------------ATTTATTTACTTGTTATTTTTATACCCTTGCAG------AGGGTA-T---TATAATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTAT------------------ATAT--------A--T---------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTTGGG---------AT--TATTTAT------------------GGGTTTCATTTTTG---------------------------------------------------------------------------------------------------GCCAATCAATTCGACTTACCAAATTTCATAAGAATCGGCGGACTATATA--------ATATTATTTT------------------C-CATTTA------------------GA-------------------------ATCTGTCATCGATTAATTTTTATACCCTTGCAG------AGGGTA-T---TATAATTTTGGTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAATAC-------------------TGATGGACGTTGA--TGCACT-TCGAGCAGTACAAACA----------------------------AGTGGCCC----A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCTTGA---------AA--TACATAT------------------GGTTGAGGGC--------------------------------------------------------------------------------TGTAAGACTATGCTTATTAATTGTTTATACAAATTTTATAATGAAATTTTATAAG----------------------------------CATA------------TG----GTAT---------TTTGT-TGGATA--ATAAT-----------AAATTA-------------ATTATTTGTATATCCTTGCAG------AGGGTA-T---AATGATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGATACTTTTCCAACCCCATAAAGTAT------------------ATAT--------A--TTCTTGAT----CAA-----ACG----AGTCGATCT----------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTTTG---------TG--CGTACCT------------------TGATCAGGGTAAAAGCGCGTGCCGATCGGAC-----------------------GT--------------------------------------------------------------------------------------------CTATATCTTATACTT-CCATATTAACAATAGTTAAATGCTGTAAAAATA--------------------------------------------------------------------TCCTTTTATACCCTTGCAG------AGGGTA-T---TATAATTTTGGTCAGAAGTTTGTAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTAT------------------ATAT--------A--TTCTTGAT----CAGGATCAATA----------------------------GGGTGTCG----A	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATTGTC---------AT--AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTATTTTTAA------------TATA-TATTTATAGAAAATTTTGTACGGATA--AAACT-----------GGATAA-------------GTTATTTTGATACCCTTGCAG------AGGGTA-T---TATAATTTTGGTCA---GTTTGTAATGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTAT------------------ATACATATGTATA--TTCTTGAT----CAGTATCAATA----------------------------GGGG---------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCTTGG---------AA--TGTTTGT------------------CGAACAAAGTACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGAATTCACAAGACAC------------------TGGT--------A--A---------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..TTGG---------AA--TGTTTGT------------------CGAACAAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCTTGG---------AA--TGTTTGT------------------CGAACAAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGAATTCACAAGACAC------------------TGGA--------...................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CTGAATTCACAAGACAC------------------TGGT--------...................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCTTGG---------AA--TGTTTGT------------------CGAACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................AAGTACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGAATTCACA.......................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................CAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGAATTCACAAGACAC------------------T..............................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGTTTGT------------------CGAACAAAGTACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................AAAGTACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGAATTCACAAGACAC------------------T..............................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGAATTCACAAGACAC------------------T..............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................AAGTACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGAATTCACAAG.....................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AA--TGTTTGT------------------CGAACAAAGTACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC.................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....G---------AA--TGTTTGT------------------CGAACAAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCTTGG---------AA--TGTTTGT------------------CGAACTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................CAAAGTACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGAATTCACAAGA....................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCCTTGCAG------AGGGTTATACCTATGATATCAGTCAGAAGTTTGCAACGCAATGAGGGAGACATGTGCAACCAAATAAAGTTT------------------ATATGTATAT--A--T---------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

TATTTC---------TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTTTATACCATTTCAG------AGGTTG-T---ATTATTTCCAGTCCAAAGTATGCAACGCATTGAGGGAGACATTTGCAACCATATAAAAAA-------------------ATATGTATATATA--TTCCTGAT----CGGT------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AAATTA---------AA--TGAGA---------------------------------------------------------------------------------------T--AAG-TAGTATAACTGAAA----------------------------------------------------------------------------------T----------AT------------TATC-GATCT---------TTTGT-TGGGT------------------------A-------------ATTGTTACTGTACCCTTTCAG------AGTGTA-T---TTTTAAATTCGTCAGAAGTTTGCAACGCAGTAAGGAGGACATTCGCGACCAAATAAAGTAT------------------ATAAATATATATA--TGTTA-----------------------------------------------------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

ATTCCG---------AT--AATTCTTATATAT------------------A--GA--AATCTTAAAGTTTAATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-C-------------------------------------------------AA-------------AT-TATTTCATATCCTTACAG------AGGATA-T---ATTTATTTTGGTCAAAAGTTTGCCACGCAGTAAAGGATACATTTTTGACCATATAAGTTTAGTATTAAGAGCCGAGTCGATATAGACATATA--TTCTGGAT----CAGGATAAGTAGACGATTCGATCTG---------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAT----CAGGATAAGTAGACGAT...................................	25	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--TTCTGGAT----CAGGATAAGTAGACGA....................................	26	1	1.00	1	1	0	0	0	0	0	0

dp5

AAAATA----TGTTGAT--CAATCTT---TACTGTAAACTTAATTGAAAAAAGAAAATATCTT----TATGCACT-----------------------AAC---------------------------------------------------------------------------------------------------TAAACA-ATATGTAATAAGATAATTAA------------AC-CAAATTTA--------------------CC---CAGGTCCTAATATTACTAG-------------TATGTTTTCATACCCTTT---------------------TTGATTTTGGTCAAGTGTTTGCAATGAACAAAAGGCTACACATCCGACCTCACAACATT-------------------GTATATACATATA--T---------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................GAAAATATCTT----TATGCACT-----------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................GTCAAGTGTTTGCAATGAACA...............................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................AATGAACAAAAGGCTACACAT..................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................GTTTTCATACCCTTT---------------------TTGATTTTG....................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TAAGATAATTAA------------AC-CAAATTTA--------------------CC---CAGG................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GTTTGCAATGAACAAAAGGC.........................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AA------------AC-CAAATTTA--------------------CC---CAGGTCC.............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGATTTTGGTCAAGTGTTTG........................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GTTGGG---------AA--TGTTTGT------------------CGAACAAAGTATAAATCATAATGCACAAGAC-----------------------AC--------------------------------------------------------------------------------------------CGGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTAT--------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

AGTTGG---------AA--TTTACAT------------------GGCTGTAGT-GCACC---------------------------------------------------------------------------TACA-AGCTAAACCTACTATCTACTAC-------------------------------CGCCTAAACACAAAA-TGGCACTTAAGATAATT------------------------------------------------------TTTTAATATTT--------------CTTA-TTTTATTATACCCTTGCAA----AAAGGGTA-T---ATTAATTTTGGTCAGAAGTGTGCAACGCATAGAAGGAAGCATCTCCGACCGTATAAGGTAT------------------AT---TGTATATA--TTCTGGAT----CAGCGCAAACT---------TCTCGTAGACCGT---AA-GAAA---------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................................................................................................................................................................................................................................................T---ATTAATTTTGGTCAGAAGTGTGCAA.....................................................................................................................................	26	20	0.25	5	0	5	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TTTTGGTCAGAAGTGTGCAACG...................................................................................................................................	22	20	0.20	4	0	4	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TTAATTTTGGTCAGAAGTGTGCAACGCA.................................................................................................................................	28	20	0.15	3	0	3	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AGAAGTGTGCAACGCATAGAAGG..........................................................................................................................	23	20	0.10	2	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................ATAGAAGGAAGCATCTCCG...............................................................................................................	19	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................AACGCATAGAAGGAAGCATCTCCGAC.............................................................................................................	26	20	0.05	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................AAAGGGTA-T---ATTAATTTTGGTCAGAA.............................................................................................................................................	26	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................TTTTATTATACCCTTGCAA----AA.........................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................A-T---ATTAATTTTGGTCAGAAGTGTG........................................................................................................................................	24	20	0.05	1	0	0	1	0	0

droVir3

TTGGAG-------------TATAAAA------------------ATACAAA----------AT----TATTTAAG-----------------------GTATAAAAATTTACAA---TTCGTTTATT-------------------------------------------------------------------------TGTAAAA-AAAAAATTTTTTT--TTTT------------TTTC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATATATTTATACCCTTGCAG------AGGGTA-T---TATAATTTTGTCGTGAAATGTGTAACGCATAGAAGGAGACATCTCCGACCCCATAAAGTAT------------------ATAT--------A--TTCTTA----------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAG........................................................................................................................	23	20	5.10	102	0	0	0	0	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGG..........................................................................................................................	21	20	2.75	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TTCGG---------T--------TGAT---CAGG-----------CCGT-------------C...................................................................................................................................................................................................	19	20	2.30	46	0	0	0	0	8	1	15	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	13	0	1	0	1	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGA.......................................................................................................................	24	20	2.15	43	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	0	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGAC......................................................................................................................	25	20	0.95	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TTC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATAT...............................................................................................................................................................................................	27	20	0.80	16	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	4	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TCGG---------T--------TGAT---CAGG-----------CCGT-------------C...................................................................................................................................................................................................	18	20	0.75	15	0	0	1	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4
................................................................................................................................................................................................................................................TTC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATA................................................................................................................................................................................................	26	20	0.70	14	0	0	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TGGAG-------------TATAAAA------------------ATACAAA----------AT----TATT................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	15	0.67	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATATAT.............................................................................................................................................................................................	25	20	0.60	12	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TACAAA----------AT----TATTTAAG-----------------------GTATAAAAATT..........................................................................................................................................................................................................................................................................................................................................................................................................	27	12	0.58	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTGGAG-------------TATAAAA------------------ATACAAA----------AT----TATT................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	14	0.43	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................T------------TTTC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATA................................................................................................................................................................................................	28	20	0.40	8	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TATAAAA------------------ATACAAA----------AT----TATTTAAG-----------------------GTA..................................................................................................................................................................................................................................................................................................................................................................................................................	27	11	0.36	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGACATC...................................................................................................................	28	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATATAT.............................................................................................................................................................................................	28	20	0.35	7	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TT------------TTTC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CA..................................................................................................................................................................................................	27	19	0.32	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATAT...............................................................................................................................................................................................	26	20	0.30	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TTC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATATA..............................................................................................................................................................................................	28	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATATA..............................................................................................................................................................................................	27	20	0.30	6	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TGGAG-------------TATAAAA------------------ATACAAA----------AT----TATTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	15	0.27	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TTCGG---------T--------TGAT---CAGG-----------CCGT-------------....................................................................................................................................................................................................	18	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5
.TGGAG-------------TATAAAA------------------ATACAAA----------AT----TATTTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................	28	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TTTT------------TTTC-ATTCGG---------T--------TGAT---CAGG-----------C....................................................................................................................................................................................................................	24	18	0.22	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGAT---CAGG-----------CCGT-------------CATATA..............................................................................................................................................................................................	18	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TCGG---------T--------TGAT---CAGG-----------CCGT-------------CATATATTT...........................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATA................................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GAAATGTGTAACGCATAGAAGGAGACA.....................................................................................................................	27	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATATATTT...........................................................................................................................................................................................	27	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TT------------TTTC-ATTCGG---------T--------TGAT---CAGG-----------C....................................................................................................................................................................................................................	22	19	0.16	3	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TTT------------TTTC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CA..................................................................................................................................................................................................	28	19	0.16	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TACAAA----------AT----TATTTAAG-----------------------GTATAAAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................	26	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TTC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------C...................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................ACGCATAGAAGGAGACATCTCCGACC............................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATAT...............................................................................................................................................................................................	23	20	0.15	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................T------------TTTC-ATTCGG---------T--------TGAT---CAGG-----------C....................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TCGG---------T--------TGAT---CAGG-----------CCGT-------------CATATAT.............................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................................TC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------C...................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TGTAACGCATAGAAGGAGACATC...................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.TGGAG-------------TATAAAA------------------ATACAAA----------AT----TA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	15	0.13	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TTTT------------TTTC-ATTCGG---------T--------TGAT---CAGG-----------CC...................................................................................................................................................................................................................	25	18	0.11	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TTTT------------TTTC-ATTCGG---------T--------TGAT---CAGG-----------CCG..................................................................................................................................................................................................................	26	18	0.11	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TTT------------TTTC-ATTCGG---------T--------TGAT---CAGG-----------CCG..................................................................................................................................................................................................................	25	19	0.11	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................ACAAA----------AT----TATTTAAG-----------------------GTATAAAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................TTCGG---------T--------TGAT---CAGG-----------CCGT-------------CAT.................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TA-T---TATAATTTTGTCGTG...............................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATA................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TTTC-ATTCGG---------T--------TGAT---CAGG-----------CCG..................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GAAATGTGTAACGCATAGAAGGAGAC......................................................................................................................	26	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CAT.................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TTC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATAA...............................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TCGG---------T--------TGAT---CAGG-----------CCGT-------------CAT.................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GTCGTGAAATGTGTAACGCATAGAAG...........................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TAGAAGGAGACATCTCCGACCCCAT........................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................AATGTGTAACGCATAGAAGGAGACATC...................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AATGTGTAACGCATAGAAGGAGA.......................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................GTGTAACGCATAGAAGGAGACATCTCC................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................T------------TTTC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATAA...............................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................ACGCATAGAAGGAGACATCTCCGC..............................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AATGTGTAACGCATAGAAGGAGAC......................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GTAACGCATAGAAGGAGACATCTCC................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TTC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CA..................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................T--------TGAT---CAGG-----------CCGT-------------CATATATTTATTT.......................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATATAA.............................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................T---TATAATTTTGTCGTGAAATG..........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TT------------TTTC-ATTCGG---------T--------TGAT---CAG.................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GAAATGTGTAACGCATAGAAGGAGACAT....................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................T------------TTTC-ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------C...................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................AATTTTGTCGTGAAATGTGTAACGC..................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................ATTCGG---------T--------TGAT---CAGG-----------CCGT-------------CATATAT.............................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TTT------------TTTC-ATTCGG---------T--------TGAT---C...................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GTTTGT---------TA--TGTTTAG------------------CGAGCAGAATACTAATCACAATGTACAGGAT-----------------------AC--------------------------------------------------------------------------------------------GGGTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGATA-------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................GAATACTAATCACAATGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................................TGTACAGGAT-----------------------AC--------------------------------------------------------------------------------------------GGGTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C..............................................................................................................	19	7	0.14	1	1	0	0	0	0	0

droGri2

TTACTT---------TA--CGCAG---------------------------------------------------------------------------------------CG-ATGTTTGATTATTTTAAA----------------------------------------------------------------------------------TAACAGCAATCATAT----TTAAAATA-T-------------------------------------------------------------TTTG--TTTTTTCTACCCTTGTAG------AGTGTA-T---TATAATTCTGTTTTCATGTTTGCAACGCATTGAAGGAGACGCCTCCGACCCCATAAGATTG------------------ATAT--------A--T---------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_3328

scaffold_13417:3342721-3342871 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-2.8	-2.6	-2.6