ID:

dan_3325

 Coordinate:

scaffold_13417:2818144-2818294 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.1 -12.1

Flybase annnotation

CDS [Dana\GF20497-cds]; exon [dana_GLEANR_2906:4]; intron [Dana\GF20497-in]

No Repeatable elements found

mature
  1. scaffold_13417:2810486-2810510 +
  2. dan_3325  scaffold_13417:2818147-2818171 +
  3. scaffold_13417:2826232-2826256 -
  4. scaffold_13417:2832949-2832973 -
star
  1. scaffold_12586:515724-515751 +
  2. scaffold_12911:254050-254077 -
  3. scaffold_13102:32291-32318 -
  4. scaffold_13137:13094-13121 +
  5. scaffold_13230:1506383-1506410 -
  6. scaffold_13248:4502557-4502584 -
  7. scaffold_13258:306210-306237 -
  8. scaffold_13417:2810585-2810612 +
  9. scaffold_13417:2811888-2811915 -
  10. dan_3325  scaffold_13417:2818246-2818273 +
  11. scaffold_13417:2826130-2826157 -
  12. scaffold_13417:2832847-2832874 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGAACGGAACACCGAAAAAGCTCCGTCCCCTTCCGTCAGCTCGATACTATGCTTCATGACCTCTGTCCTTCCTAATCCGTTTTCCTCAAAATTCAGGAACGATTTTTTTTATTTTGTTTAGTTGTTTTGTTTCCTCTTCTCCCAGTTCATGCTGCTCATGACCATCCTTCTCTGTCCCTGTTCTGCTCGCTTTCTCTTCAGCCATTTCTATCTCGCCTGAGTGTGCACGATGAGTGCAAGGAAGTGGAACG
*****************************************************........................................((((.((((............((..((((....(((.............))).....))))..))............)).)).))))*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
 V039
embryo
.....................................................TCATGACCTCTGTCCTTCCTAATCC............................................................................................................................................................................. 25 0 4 2.75 11 6 5 0 0
.....................................................TCATGACCTCTGTCCTTCCTAATCCG............................................................................................................................................................................ 26 0 4 2.75 11 10 1 0 0
..GAAGGAACACCGAAACAGCTCCG.................................................................................................................................................................................................................................. 23 3 1 1.00 1 0 0 1 0
........................................................................................................................................................TGCTCATGACCATCCTTCTCTGTCCCTG....................................................................... 28 0 12 1.00 12 12 0 0 0
..........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCTTTCT........................................................ 25 0 9 0.56 5 4 1 0 0
...........................................................................................................................................................TCATGACCATCCTTCTCTGTCCCTG....................................................................... 25 0 13 0.54 7 6 1 0 0
....................................................................................................................................................................................................TTCAGCCATTTCTATCTCGCCTGAGT............................. 26 0 2 0.50 1 0 1 0 0
.....................................................................................................................................................................................................TCAGCCATTTCTATCTCGCCTGAGTG............................ 26 0 2 0.50 1 1 0 0 0
.....................................................TCATGACCTCTGTCCTTCCTAATC.............................................................................................................................................................................. 24 0 4 0.50 2 1 1 0 0
.....................................................TCATGACCTCTGTCCTTCCTAATCCGTTT......................................................................................................................................................................... 29 0 4 0.50 2 2 0 0 0
.........................TCCCCTTCCGTCAGCTCGATACTATTCT...................................................................................................................................................................................................... 28 1 2 0.50 1 1 0 0 0
.....................................................TCATGACCTCTGTCCTTCCTAATCCGTT.......................................................................................................................................................................... 28 0 4 0.50 2 1 1 0 0
.....................................................TCATGACCTCTGTCCTTCCTAATCCGT........................................................................................................................................................................... 27 0 4 0.50 2 1 1 0 0
..................................................................................................................................................................................................................TCTCGCCTGAGTGTGCACGATGAG................. 24 0 2 0.50 1 1 0 0 0
........................................................................................................................................................TGCTCATGACCATCCTTCTCTGTCCC......................................................................... 26 0 12 0.50 6 5 1 0 0
....................................................................................................................................................................TCCTTCTCTGTCCCTGTTCTGCTCG.............................................................. 25 0 10 0.40 4 3 1 0 0
..............................................................................................................................................................................TCCCTGTTCTGCTCGCTTTCTCTTCAGC................................................. 28 0 6 0.33 2 1 1 0 0
...........................................................................................................................................................TCATGACCATCCTTCTCTGTCCCTGTTC.................................................................... 28 0 13 0.31 4 4 0 0 0
.................................................................................................................................TTTCCTCTTCTCCCAGTTCATGCTGC................................................................................................ 26 0 13 0.31 4 2 2 0 0
........................................................................................................................................TTCTCCCAGTTCATGCTGCTCATGACCA....................................................................................... 28 0 11 0.27 3 3 0 0 0
.....................................................................................................................................................TGCTGCTCATGACCATCCTTCTCTG............................................................................. 25 0 11 0.27 3 3 0 0 0
......................................................................................................................TAGTTGTTTTGTTTCCTCTTCTCCCAG.......................................................................................................... 27 0 11 0.27 3 2 1 0 0
............CGAAAAAGCTCAGTTCCC............................................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 1 0
......................................................CATGACCTCTGTCCTTCCTAATCCGT........................................................................................................................................................................... 26 0 4 0.25 1 1 0 0 0
...............................................................................................................TTTTGTTTAGTTGTTTTGTTTCCTCT.................................................................................................................. 26 0 4 0.25 1 0 1 0 0
........................................TCGATACTATGCTTCATGACCTCTGTCC....................................................................................................................................................................................... 28 0 4 0.25 1 0 1 0 0
......................................................CATGACCTCTGTCCTTCCTAATCCG............................................................................................................................................................................ 25 0 4 0.25 1 1 0 0 0
........................................................TGACCTCTGTCCTTCCTAATCCGTT.......................................................................................................................................................................... 25 0 4 0.25 1 1 0 0 0
...................................TCAGCTCGATACTATGCTTCATGACC.............................................................................................................................................................................................. 26 0 4 0.25 1 1 0 0 0
.....................................................TCATGACCTCTGTCCTTCCTACTCCG............................................................................................................................................................................ 26 1 4 0.25 1 1 0 0 0
............................................TACTATGCTTCATGACCTCTGTCCT...................................................................................................................................................................................... 25 0 4 0.25 1 0 1 0 0
....................................................TTCATGACCTCTGTCCTTCCTAATCCGT........................................................................................................................................................................... 28 0 4 0.25 1 1 0 0 0
..............................TTCCGTCAGCTCGATACTATGCTTCAT.................................................................................................................................................................................................. 27 0 4 0.25 1 1 0 0 0
...........................................................................................................................................................TCATGACCATCCTTCTCTGTCCCTGT...................................................................... 26 0 13 0.23 3 3 0 0 0
.........................................................................................................................................................GCTCATGACCATCCTTCTCTGTCCCTG....................................................................... 27 0 13 0.23 3 3 0 0 0
............................................................................................................................................................CATGACCATCCTTCTCTGTCCCTGTTC.................................................................... 27 0 13 0.23 3 3 0 0 0
..........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCTTTCTCT...................................................... 27 0 9 0.22 2 2 0 0 0
.......................................................................................................................................................................TTCTCTGTCCCTGTTCTGCTCGCTTTC......................................................... 27 0 9 0.22 2 1 1 0 0
..........................................................................................................................................................................TGTGTCCCTGTTCTGCTCGCTTTCT........................................................ 25 1 9 0.22 2 0 2 0 0
........................................................................................................................................................................TCTCTGTCCCTGTTCTGCTCGCTTTC......................................................... 26 0 9 0.22 2 1 1 0 0
....................................................................................................................................................................TCCTTCTCTGTCCCTGTTCTGC................................................................. 22 0 10 0.20 2 2 0 0 0
...ATGGAACACCGAAACAGCTC.................................................................................................................................................................................................................................... 20 2 5 0.20 1 0 0 0 1
..........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCT............................................................ 21 0 10 0.20 2 1 1 0 0
.............................................................................................................................TTTGTTTCCTCTTCTCCCAGTTCATG.................................................................................................... 26 0 15 0.20 3 2 1 0 0
....................................................................................................................................................................TCCTTCTCTGTCCCTGTTCTGCTCGCT............................................................ 27 0 10 0.20 2 1 1 0 0
................................................................................................................................................................ACCATCCTTCTCTGTCCCTGTTCTGC................................................................. 26 0 10 0.20 2 1 1 0 0
.....................................................................................................................................................TGCTGCTCATGACCATCCTTCTCTGTC........................................................................... 27 0 10 0.20 2 1 1 0 0
.....................................................TCATGACCCCTGTCCTTCCTAATCC............................................................................................................................................................................. 25 1 5 0.20 1 0 1 0 0
.......................................................................................................................................................................TTCTCTGTCCCTGTTCTGCTCGCTT........................................................... 25 0 10 0.20 2 1 1 0 0
.....................................................................................................................................................................CCTTCTCTGTCCCTGTTCTGCTCGC............................................................. 25 0 10 0.20 2 2 0 0 0
....................................................................................................................................................ATGCTGCTCATGACCATCCTTCTCTG............................................................................. 26 0 11 0.18 2 2 0 0 0
...........................................................................................................................................TCCCAGTTCATGCTGCTCATGACCATC..................................................................................... 27 0 11 0.18 2 1 1 0 0
........................................................................................................................................TTCTCCCAGTTCATGCTGCTCATGAC......................................................................................... 26 0 11 0.18 2 0 2 0 0
...........................................................................................................................................TCCCAGTTCATGCTGCTCATGAC......................................................................................... 23 0 12 0.17 2 0 2 0 0
...............................................................................................................................................................................................TTCTCTTCAGCCATTTCTATCTCGCC.................................. 26 0 6 0.17 1 0 1 0 0
......................................................................................................................................TCTTCTCCCAGTTCATGCTGCTCAT............................................................................................ 25 0 13 0.15 2 2 0 0 0
........................................................................................................................................TTCTCCCAGTTCATGCTGCTCATG........................................................................................... 24 0 13 0.15 2 2 0 0 0
..................................................................................................................................TTCCTCTTCTCCCAGTTCATGCTGC................................................................................................ 25 0 13 0.15 2 1 1 0 0
..................................................................................................................................TTCCTCTTCTCCCAGTTCATGCTGCTCA............................................................................................. 28 0 13 0.15 2 2 0 0 0
..AACGGAAGACCGAAACAGC...................................................................................................................................................................................................................................... 19 2 7 0.14 1 0 0 1 0
...............................................................................................................................TGTTTCCTCTTCTCCCAGTTCATGCT.................................................................................................. 26 0 14 0.14 2 1 1 0 0
..........ACCGAATACGCCCCGTCCC.............................................................................................................................................................................................................................. 19 3 7 0.14 1 0 0 1 0
..............................................................................................................................................................TGACCATCCTTCTCTGTCCCTGTTC.................................................................... 25 0 15 0.13 2 2 0 0 0
...............................................................................................................................................................GACCATCCTTCTCTGTCCCTGTTCTG.................................................................. 26 0 15 0.13 2 2 0 0 0
AGGACGGAGCACCGATAAAG....................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 1 0
..........................................................................................................................TGTTTTGTTTCCTCTTCTCCCAGTTCA...................................................................................................... 27 0 17 0.12 2 2 0 0 0
..........................................................................................................................TGTTTTGTTTCCTCTTCTCCCAGT......................................................................................................... 24 0 17 0.12 2 2 0 0 0
.....................................................TCATGACCTCTGTCCTTCCT.................................................................................................................................................................................. 20 0 17 0.12 2 2 0 0 0
...........................................................................................................................................................................CTGTCCCTGTTCTGCTCGCTTTCTCTT..................................................... 27 0 9 0.11 1 1 0 0 0
..............................................................................................................................................................................TCCCTGTTCTGCTCGCTTTCTCTTCA................................................... 26 0 9 0.11 1 1 0 0 0
....................................................................................................................................................................TCCTTCTCTGTCCCTGTTCTGCTCGCTTT.......................................................... 29 0 9 0.11 1 1 0 0 0
..........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCTTTCC........................................................ 25 1 9 0.11 1 0 1 0 0
...ACGGCAGACCGAAACAGCTC.................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 1 0
.........................................................................................................................................................................CTCTGTCCCTGTTCTGCTCGCTTTCT........................................................ 26 0 9 0.11 1 1 0 0 0
.............................................................................................................................................................................GTCCCTGTTCTGCTCGCTTTCTCTTCA................................................... 27 0 9 0.11 1 1 0 0 0
.................................................................................................................TTGTTTAGTTGTTTTGTTTCCTCTTC................................................................................................................ 26 0 9 0.11 1 1 0 0 0
..........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCTTTCTCTT..................................................... 28 0 9 0.11 1 1 0 0 0
...AGGGAACACCGAAACAGC...................................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 1 0
..........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCTTT.......................................................... 23 0 9 0.11 1 1 0 0 0
..........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCTTTCTC....................................................... 26 0 9 0.11 1 1 0 0 0
..........................................................................................................................................................................TCTGTCCCAGTTCTGCTCGCTTTCT........................................................ 25 1 9 0.11 1 1 0 0 0
...................................................................................................................................................................ATCCTTCTCTGTCCCTGTTCTGCTCGCT............................................................ 28 0 10 0.10 1 1 0 0 0
..................................................................................................................TGTTTAGTTGTTTTGTTTCCTCTTCTCCC............................................................................................................ 29 0 10 0.10 1 1 0 0 0
.......................................................................................................................................................................TTCTCTGTCCCTGTTCTGCTCG.............................................................. 22 0 10 0.10 1 0 1 0 0
..................................................................................................................................................................CATCCTTCTCTGTCCCTGTTCTGCTCG.............................................................. 27 0 10 0.10 1 1 0 0 0
.....................................................................................................................................................................CCTTCTCTCTCCCTGTTCTGCTCGCT............................................................ 26 1 10 0.10 1 1 0 0 0
.........................................................................................................................................TCTCCCAGTTCATGCTGCTCATGACCATC..................................................................................... 29 0 10 0.10 1 1 0 0 0
......................................................................................................................................................GCTGCTCATGACCATCCTTCTCTGTCC.......................................................................... 27 0 10 0.10 1 1 0 0 0
....................................................................................................................................................................TCCTTCTCCGTCCCTGTTCTGCTCGCT............................................................ 27 1 10 0.10 1 1 0 0 0
....................................................................................................................................................................TCCTTCTCTGTCCCTGTTCTGCTCT.............................................................. 25 1 10 0.10 1 0 0 0 1
.....................................................................................................................................................................CCTTCTCTGTCCCTGTTCTGCTCGCC............................................................ 26 1 10 0.10 1 0 1 0 0
....................................................................................................................................................................TCCTTCTCTGTCCCTGTTCTGCTCGC............................................................. 26 0 10 0.10 1 1 0 0 0
....................................................................................................................................................................TCCTTCTCTGTCCCTGTTCTGCTGGCT............................................................ 27 1 10 0.10 1 1 0 0 0
..............................................................................................................................................................TGACCATCCTTCTCTGTCCCTGTTCTGC................................................................. 28 0 10 0.10 1 1 0 0 0
......................................................................................................................................................GCTGCTCATGACCATCCTTCTCTGTCCC......................................................................... 28 0 10 0.10 1 1 0 0 0
.......................................................................................................................................................................TTCTCTGTCCCTGTTCTGCTCGCT............................................................ 24 0 10 0.10 1 1 0 0 0
.....................................................................................................................................................TGCTGCTCATGACCATCCTTCTCTGTCCC......................................................................... 29 0 10 0.10 1 1 0 0 0
....................................................................................................................................................................TCCTTCTCGGTCCCTTTTCTGCTCGC............................................................. 26 2 11 0.09 1 1 0 0 0
...........................................................................................................................................TCCCAGTTCATGCTGCTCATGACCATCCT................................................................................... 29 0 11 0.09 1 1 0 0 0
.........................................................................................................................TTGTTTTGTTTCCTCTTCTCCCAGT......................................................................................................... 25 0 11 0.09 1 1 0 0 0
........................................................................................................................................TTCTTCCAGTTCATGCTGCTCATGAC......................................................................................... 26 1 11 0.09 1 0 1 0 0
........................................................................................................................................TTCTCCCAGTTCATGCTGCTCATGACC........................................................................................ 27 0 11 0.09 1 1 0 0 0
......................................................................................................................................TCTTCTCCCAGTTCATGCTGCTCATGACC........................................................................................ 29 0 11 0.09 1 1 0 0 0
...............................................................................................................................................AGTTCATGCTGCTCATGACCATCCT................................................................................... 25 0 11 0.09 1 1 0 0 0
.................................................................................................................................................TGCATGCTGCTCATGACCATCCTTC................................................................................. 25 1 11 0.09 1 0 1 0 0
.................................................................................................................................................TTCATGCTGCTCATTACCATCCTTC................................................................................. 25 1 11 0.09 1 0 0 0 1
..................................................................................................................................................TCATGCTGCTCATGACCATCCTTCTCTG............................................................................. 28 0 11 0.09 1 1 0 0 0
.....................................................................................................................................................TGCTGCTCATGACCATCCTTC................................................................................. 21 0 11 0.09 1 1 0 0 0
...........................................................................................................................................TCCCAGTTCATGCTGCTCATGACCATCC.................................................................................... 28 0 11 0.09 1 1 0 0 0
.........................................................................................................................TTGTTTTGTTTCCTCTTCTCCCAGTTCA...................................................................................................... 28 0 11 0.09 1 1 0 0 0
...........................................................................................................................................TCACAGTTCATGCTGCTCATGACCATCC.................................................................................... 28 1 11 0.09 1 0 1 0 0
.........................................................................................................................................TCTCCCAGTTCATGCTGCTCATGACCA....................................................................................... 27 0 11 0.09 1 1 0 0 0
..................................................................................................................................................TCATGCTGCTCATGACCATCCTTCT................................................................................ 25 0 11 0.09 1 1 0 0 0
...........................................................................................................................................TCACAGTTCATGCTGCTCATGACCATC..................................................................................... 27 1 11 0.09 1 0 1 0 0
...........................................................................................................................................TCCCATTTCATGCTGCTCATGACCATCC.................................................................................... 28 1 11 0.09 1 0 1 0 0
........................................................................................................................GTTGTTTTGTTTCCTCTTCTCCCAG.......................................................................................................... 25 0 11 0.09 1 1 0 0 0
.........................................................................................................................................TCTCCCAGTTCATGCTGCTCATGACC........................................................................................ 26 0 11 0.09 1 0 1 0 0
........................................................................................................................................TTCTCCCAGTTCATGCTGCTCATGA.......................................................................................... 25 0 11 0.09 1 1 0 0 0
..............................................................................................................................................CAGTTCATGCTGCTCATGACCATCC.................................................................................... 25 0 11 0.09 1 1 0 0 0
......................................................................................................................TAGTTGTTTTGTTTCCTCTTCTCCCAGT......................................................................................................... 28 0 11 0.09 1 1 0 0 0
........................................................................................................................................................TGCTCATGACCATCCTTCTCTGTTC.......................................................................... 25 1 12 0.08 1 1 0 0 0
.........................................................................................................................................TGTCCCAGTTCATGCTGCTCATGAC......................................................................................... 25 1 12 0.08 1 0 1 0 0
......................................................................................................................................................TCTGCTCATGACCATCCTTCTCTGTCCC......................................................................... 28 1 12 0.08 1 0 1 0 0
...........................................................................................................................................TCCCAGTTCATGCTGCTCATGACCAT...................................................................................... 26 0 12 0.08 1 1 0 0 0
........................................................................................................................................................TTCTCATGACCATCCTTCTCTGTCC.......................................................................... 25 1 12 0.08 1 0 1 0 0
...........................................................................................................................................TGCCAGTTCATGCTGCTCATGACC........................................................................................ 24 1 12 0.08 1 0 1 0 0
...........................................................................................................................................................TCATGACCGTCCTTCTCTGTCCCTGTT..................................................................... 27 1 13 0.08 1 1 0 0 0
...................................................................................................................................TCCTCTTCTCCCAGTTCATGCTGCTCA............................................................................................. 27 0 13 0.08 1 1 0 0 0
.................................................................................................................................TGTCCTCTTCTCCCAGTTCATGCTGCC............................................................................................... 27 2 13 0.08 1 0 1 0 0
...........................................................................................................................................................TCATGACCATCCTTCTCTGTCCC......................................................................... 23 0 13 0.08 1 0 1 0 0
............................................................................................................................................................CATGACCAGCCTTCTCTGTCCCTG....................................................................... 24 1 13 0.08 1 1 0 0 0
...................................................................................................................................TCCTCTTCTCCCAGTTCATGCTGCT............................................................................................... 25 0 13 0.08 1 1 0 0 0
.........................................................................................................................................................GCTCATGACCATCCTTCTCTGTCCC......................................................................... 25 0 13 0.08 1 0 1 0 0
......................................................................................................................................TCTTCTCCCAGTTCATGCTGCTCA............................................................................................. 24 0 13 0.08 1 1 0 0 0
.................................................................................................................................TTTCCTCTTCTCCCAGTTCATGCTGCT............................................................................................... 27 0 13 0.08 1 1 0 0 0
.....................................................................................................................................CTCTTCTCCCAGTTCATGCTGCT............................................................................................... 23 0 13 0.08 1 0 1 0 0
...........................................................................................................................................................TCATGACCATCCTTCTCTGTCCCC........................................................................ 24 1 13 0.08 1 0 1 0 0
........................................................................................................................................TTCTCCCAGTTCATGCTGCTC.............................................................................................. 21 0 13 0.08 1 1 0 0 0
...........................................................................................................................................................TCATGACCATCCTTCTCTGTCCCTGTT..................................................................... 27 0 13 0.08 1 1 0 0 0
...........................................................................................................................................................TCATGACCATCCTTCTCTGTCCCTGTTCT................................................................... 29 0 13 0.08 1 1 0 0 0
.........................................................................................................................................................GCTCATGAGCATCCTTCTCTGTCCCTG....................................................................... 27 1 13 0.08 1 1 0 0 0
...............................................TATGCTTCATGACCTCTGTCCTTCCT.................................................................................................................................................................................. 26 0 14 0.07 1 0 1 0 0
.................................................................................................................................TTTCCTCTTCTCCCAGTTCATGCTG................................................................................................. 25 0 14 0.07 1 1 0 0 0
...............................................TATGCTTCATGACCTCTGTCCTTC.................................................................................................................................................................................... 24 0 14 0.07 1 1 0 0 0
...........................................................................................................................................................TCATGACCATCCTTCTCTG............................................................................. 19 0 14 0.07 1 1 0 0 0
..............................................................................................................................................................TGACCATCCTTCTCTGTCCCTGTT..................................................................... 24 0 15 0.07 1 1 0 0 0
...............................................................................................................................TGTTTCCTCTTCTCCCAGTTCATGC................................................................................................... 25 0 15 0.07 1 1 0 0 0
............................................................................................................................TTTTGTTTCCTCTTCTCCCAGTTCATGC................................................................................................... 28 0 15 0.07 1 1 0 0 0
..............................................................................................................................TTGTTTCCTCTTCTCCCAGTTCATG.................................................................................................... 25 0 15 0.07 1 1 0 0 0
AGAACGGCACACCAAAAA......................................................................................................................................................................................................................................... 18 2 15 0.07 1 0 1 0 0
..............................................................................................................................................................TGACCATCCTTCTCTGTCCCTGTTCT................................................................... 26 0 15 0.07 1 1 0 0 0
..............................................................................................................................................................................TCCCTGTTCTGATCGCTTTCTCTTCA................................................... 26 1 16 0.06 1 0 0 0 1
.............................................................................................................................TTTGTTTCCTCTTCTCCCAGTTC....................................................................................................... 23 0 17 0.06 1 1 0 0 0
..........................................................................................................................TGTTTTGTTTCCTCTTCTCCCAGTT........................................................................................................ 25 0 17 0.06 1 1 0 0 0
...........................................ATACTATGCTTGAGGGCCT............................................................................................................................................................................................. 19 3 17 0.06 1 1 0 0 0
...........................................................................................................................................................................................................ATTACGATCTCGCCTGCGT............................. 19 3 17 0.06 1 0 0 1 0
........................................................................................................................GGTGTTTTGTTCCCTCTGCTCC............................................................................................................. 22 3 19 0.05 1 1 0 0 0
...........................................AAACTATGCTTTATGAGCTC............................................................................................................................................................................................ 20 3 19 0.05 1 0 0 1 0
....................................................................................................................................................................................................................................GATGACTGCCAGGAAGTG..... 18 2 20 0.05 1 0 0 1 0
...................................................................................................................................................................................................................................CGATGACTGCCAGGAAGTGC.... 20 3 20 0.05 1 0 1 0 0
..CACGGAAGACCGAAACAGC...................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0
.GAACGAAACACGGAACAAGC...................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0

Anti-sense strand reads

TCTTGCCTTGTGGCTTTTTCGAGGCAGGGGAAGGCAGTCGAGCTATGATACGAAGTACTGGAGACAGGAAGGATTAGGCAAAAGGAGTTTTAAGTCCTTGCTAAAAAAAATAAAACAAATCAACAAAACAAAGGAGAAGAGGGTCAAGTACGACGAGTACTGGTAGGAAGAGACAGGGACAAGACGAGCGAAAGAGAAGTCGGTAAAGATAGAGCGGACTCACACGTGCTACTCACGTTCCTTCACCTTGC
***********************************************************************........................................((((.((((............((..((((....(((.............))).....))))..))............)).)).))))***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
 V039
embryo
 V105
male body
......................................CGAGCTATGATACGAAGTACTGGAG............................................................................................................................................................................................ 25 0 4 1.00 4 3 1 0 0 0
...................................................................................................................................................................................................................GAGCGGACTCACACGTGCTACTCAC............... 25 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................................TCGGTAAAGATAGAGCGGACTCACACGT........................ 28 0 2 0.50 1 0 1 0 0 0
..............................................................GACAGGAAGGATTAGGCAAAAGGAGTT.................................................................................................................................................................. 27 0 4 0.25 1 1 0 0 0 0
............................................ATGATACGAAGTACTGGAG............................................................................................................................................................................................ 19 0 4 0.25 1 1 0 0 0 0
....................................GTCGAGCTATGATACGAAGTACTGGAG............................................................................................................................................................................................ 27 0 4 0.25 1 1 0 0 0 0
.............................GAAGGCAGTCGAGCTGTGATACGA...................................................................................................................................................................................................... 24 1 4 0.25 1 1 0 0 0 0
........................CACGGGAAGGCAGTCAAG................................................................................................................................................................................................................. 18 2 5 0.20 1 0 1 0 0 0
.....................................................................................................................................................................GGAAGAGACAGGGACAAGACGAG............................................................... 23 0 10 0.20 2 2 0 0 0 0
..................................................................GGAAGGATTAGGCAAAAGGAGTTTT................................................................................................................................................................ 25 0 5 0.20 1 1 0 0 0 0
.....................................................................................................................................................................................AGACGAGCGAAAGAGAAGTCGGT............................................... 23 0 5 0.20 1 1 0 0 0 0
.....................................................................................................................................................................................................AGTCGGTAAAGATAGAGCGGA................................. 21 0 6 0.17 1 1 0 0 0 0
..........................................................................................................................................................................AGACAGGGACAAGACGAGCGAAA.......................................................... 23 0 9 0.11 1 1 0 0 0 0
......................................................................................................................................................................GAAGAGGCAGGGACAAGACGAG............................................................... 22 1 10 0.10 1 0 1 0 0 0
........................................................................................................................................................................AGAGACAGGGACAAGACGAGCGA............................................................ 23 0 10 0.10 1 1 0 0 0 0
..................................................................................................................................................................................ACAAAACGAGCGCAAGAGA...................................................... 19 2 11 0.09 1 0 1 0 0 0
........................................................................................................................................................................................TGAGCGAAAGAGAAGCCG................................................. 18 2 11 0.09 1 0 0 1 0 0
............................................................................................................................................................GTACTGGTAGGAAGAGACAGGGAC....................................................................... 24 0 13 0.08 1 1 0 0 0 0
.........................................................................................................................................AGAGGGTCAAGTACGACGAGTA............................................................................................ 22 0 13 0.08 1 0 1 0 0 0
.......................................................................................................................................GAAGAGGGTCAAGTACGACGAGT............................................................................................. 23 0 13 0.08 1 1 0 0 0 0
.........................................................................................................................................................CGAGTACTGGTAGGAAGAGACAGGGAC....................................................................... 27 0 13 0.08 1 1 0 0 0 0
....................................................................................................................................GGAGAAGAGGGTCAAGTACGACG................................................................................................ 23 0 13 0.08 1 1 0 0 0 0
...........................................................................................................................................................AGTACTGGTAGGAAGAGACAGGG......................................................................... 23 0 13 0.08 1 1 0 0 0 0
............................................................................................................................................................GTACTGGTAGGAAGAGACAGGGACAAG.................................................................... 27 0 13 0.08 1 1 0 0 0 0
.................................................................................................................................AAAGGAGAAGAGGGTCAAGTACGAC................................................................................................. 25 0 14 0.07 1 1 0 0 0 0
..............................................................................................................................................................TCTGGTAGGAAGAGACAGGGACAAGA................................................................... 26 1 15 0.07 1 1 0 0 0 0
....................................................................................................................................GGAGAAGAGGGTCAAGTACGA.................................................................................................. 21 0 15 0.07 1 0 0 0 0 1
.........................................................................................................................................................CGAGTGCTGGTAGGAAGA................................................................................ 18 1 15 0.07 1 0 1 0 0 0
................................................................................................................................................................TGGTAGGAAGAGACAGGGAC....................................................................... 20 0 15 0.07 1 1 0 0 0 0
.................................................................................................................................AAAGGAGAAGAGGGTCAAGTACG................................................................................................... 23 0 16 0.06 1 1 0 0 0 0
....................................................................................................................................................................................GAGACGAGCGCAAGAGAA..................................................... 18 2 16 0.06 1 0 0 1 0 0
.....................................................................................................................................................................GGAAGAGACAGGGACAAGAC.................................................................. 20 0 16 0.06 1 1 0 0 0 0
...........................................................................................................................CAAAACAAAGGAGAAGAGGGT........................................................................................................... 21 0 17 0.06 1 0 0 0 1 0
...........................................................................................................................GAGAACAAAGGAGAAGAGGGTCAAGT...................................................................................................... 26 2 17 0.06 1 1 0 0 0 0
.............................................................................................................................AAACAAAGGAGAAGAGGGTC.......................................................................................................... 20 0 17 0.06 1 1 0 0 0 0
....................................................GCGTACTGGAGACCGGAAGGAT................................................................................................................................................................................. 22 3 18 0.06 1 0 0 1 0 0
.................................................................................................................................................................................................................................GTGCTACTCACGTTCCTGCACCTTGC 26 1 18 0.06 1 1 0 0 0 0
....................................................................................................................................GGAGAAGAGGGTCAAGTA..................................................................................................... 18 0 18 0.06 1 1 0 0 0 0
.....................................................................................................................................................................GAAAGAGACAGGGACAAG.................................................................... 18 1 19 0.05 1 0 0 1 0 0
...................................................................................................................................................................................CAAGACGAGCGAAAAAAAA..................................................... 19 2 20 0.05 1 0 0 0 1 0
.........................................................................................................................................................CGAGGACTGGTAGGAATA................................................................................ 18 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13417:2818094-2818344 + dan_3325 AGAACGGAACACCGAAAAAGCTCCGTCCCCTTCCGTCAGCTCGATACTATGCTTCATGACCTCTGTCCTTCCTAATCCGTTTTCCTCAAAATTCAGGAACGATTTTTTTTATTTTGTTTAGTTGTTTTGTTTCCTCTTCTCCCAGTTCATGCTGCTC-ATGACCATCCTTCTCTGTCCCTGTTCTGCTCGCTTTCTC--TTCAGCCATTTCTATCTCGCCTGAGTGTGCACGATGAGTGCAAGGAAGTGGAACG
droBip1 scf7180000396540:19869-20058 - C---------------------------CCTTCAGTCAGCTCGATGGTATGTTTCATGACCGCAGTCCTTCCTAATCCACTTTCTTCGAAATTCAGGAAGGATTT-TTGGAGACTCTCCAGGTGTTTACTCTCCGCTTCACTCAATTTATGATGTTC-ATGTTTACCTTGCTCCGCAACTGTTCTGCTCGTCTCCTC--CTGGGCCATTTCTACTTCGTCT---------------------------------
droKik1 scf7180000301952:21003-21197 - G-------------------CTACTGCTCCTTCTACCAGGTCGATAGCGTGCTTCATCTTGCTCGTCCTTCCTAGACCGTTCGCTTCAAACGTCAAGAAGGACTC-GCGGATTTCCTGTAATCATTCCCTTTGCTCTTCCGTCAGGTTGTGCGCCTCC-GGTTCCTCCTTCTGCTCTTTTTCCGAGACTACCTCCTC--CTGAATCGACTCTAGCTCG------------------------------------
droFic1 scf7180000454086:325587-325727 - A----------------AAGGTTCTGCTCCTTCCACAAGCTGGATACGGTGCTTCTCCACCGCTGTCTTCCCTAGTCCGACGTCTTCAAACGCAAGGAACTCCTT-TTTCACCGTTTCTAACTGCTTCTTTTCCTCCTCTTCCAGGTCCCATTCTTCA------------------------------------------------------------------------------------------------
droTak1 scf7180000415258:1917-2080 + C--------------------------CCCCTCTACCAGCTCAATCGTGTGCTTCATTACACTTGTTCTTCCAAGGCCGTGCTCTTCATAGGACAGAAAGGACTT-TTTGATCTCCTGTACTTGTGCTTCCTGCTCCGCATCCAACTCGTGTGATTCT-GGCTCCATTTTCTCCT-----------------------------GTTTTCCTATCTCTCTC---------------------------------
dp5 XL_group3a:2516698-2516759 - G-------------------CC---------A--------------------------------------------------------------------------------------------------------------------------TTC-ACATCCAGCTTTCTCTGTCTCT------CTCTCTCTCTC--TCTCTCTCTCTCTCTCTCTCCT---------------------------------
droPer2 scaffold_114:118758-118957 + C----------------------------CCTCGATCAACTGGATCCGATGCTGCTCTACCGTCGTTGTTCCTAATCCGGCATCCTCATAGGTCAGAAACTCCTT-CTTTACCTTCTCCAGCTCTTCGGTTTCCGTGTCGTCCAGGGTCCAAGCTTCCACATCCACGTCCTCCTGGCGGTGTTCGGCGTACTGGCTGATTTGTGACATTTGGATCTCGCCTACTTGGGC-------------------------
droWil2 scf2_1100000004888:350647-350695 - A-------------------AC---------A---------------------------------------------------------------------ATTTTTTTTTTTTTGTATACATATATCATTTCATTTTTTCTCGAT------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12936:231421-231492 + C----------------------------CTTCCACTAAGTCGATAGTGTGCTTCTCTAAGTCTGGCGTTGCTAATCCGCTATGCTCAAAAGACAAAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AGAACGGAACACCGAAAAAGCTCCGTCCCCTTCCGTCAGCTCGATACTATGCTTCATGACCTCTGTCCTTCCTAATCCGTTTTCCTCAAAATTCAGGAACGATTTTTTTTATTTTGTTTAGTTGTTTTGTTTCCTCTTCTCCCAGTTCATGCTGCTC-ATGACCATCCTTCTCTGTCCCTGTTCTGCTCGCTTTCTC--TTCAGCCATTTCTATCTCGCCTGAGTGTGCACGATGAGTGCAAGGAAGTGGAACGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................TCATGACCTCTGTCCTTCCTAATCC................................................................................................................................................................................2542.7511650000
.....................................................TCATGACCTCTGTCCTTCCTAATCCG...............................................................................................................................................................................2642.75111010000
........................................................................................................................................................TGCTC-ATGACCATCCTTCTCTGTCCCTG.........................................................................28121.00121200000
...........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCTTTCT..........................................................2590.565410000
...........................................................................................................................................................TC-ATGACCATCCTTCTCTGTCCCTG.........................................................................25130.547610000
.......................................................................................................................................................................................................TTCAGCCATTTCTATCTCGCCTGAGT.............................2620.501010000
........................................................................................................................................................................................................TCAGCCATTTCTATCTCGCCTGAGTG............................2620.501100000
.....................................................TCATGACCTCTGTCCTTCCTAATC.................................................................................................................................................................................2440.502110000
.....................................................TCATGACCTCTGTCCTTCCTAATCCGTTT............................................................................................................................................................................2940.502200000
.....................................................TCATGACCTCTGTCCTTCCTAATCCGTT.............................................................................................................................................................................2840.502110000
.....................................................TCATGACCTCTGTCCTTCCTAATCCGT..............................................................................................................................................................................2740.502110000
.....................................................................................................................................................................................................................TCTCGCCTGAGTGTGCACGATGAG.................2420.501100000
........................................................................................................................................................TGCTC-ATGACCATCCTTCTCTGTCCC...........................................................................26120.506510000
.....................................................................................................................................................................TCCTTCTCTGTCCCTGTTCTGCTCG................................................................25100.404310000
...............................................................................................................................................................................TCCCTGTTCTGCTCGCTTTCTC--TTCAGC.................................................2860.332110000
...........................................................................................................................................................TC-ATGACCATCCTTCTCTGTCCCTGTTC......................................................................28130.314400000
.................................................................................................................................TTTCCTCTTCTCCCAGTTCATGCTGC...................................................................................................26130.314220000
........................................................................................................................................TTCTCCCAGTTCATGCTGCTC-ATGACCA.........................................................................................28110.273300000
.....................................................................................................................................................TGCTGCTC-ATGACCATCCTTCTCTG...............................................................................25110.273300000
......................................................................................................................TAGTTGTTTTGTTTCCTCTTCTCCCAG.............................................................................................................27110.273210000
......................................................CATGACCTCTGTCCTTCCTAATCCGT..............................................................................................................................................................................2640.251100000
...............................................................................................................TTTTGTTTAGTTGTTTTGTTTCCTCT.....................................................................................................................2640.251010000
........................................TCGATACTATGCTTCATGACCTCTGTCC..........................................................................................................................................................................................2840.251010000
......................................................CATGACCTCTGTCCTTCCTAATCCG...............................................................................................................................................................................2540.251100000
........................................................TGACCTCTGTCCTTCCTAATCCGTT.............................................................................................................................................................................2540.251100000
...................................TCAGCTCGATACTATGCTTCATGACC.................................................................................................................................................................................................2640.251100000
............................................TACTATGCTTCATGACCTCTGTCCT.........................................................................................................................................................................................2540.251010000
....................................................TTCATGACCTCTGTCCTTCCTAATCCGT..............................................................................................................................................................................2840.251100000
..............................TTCCGTCAGCTCGATACTATGCTTCAT.....................................................................................................................................................................................................2740.251100000
...........................................................................................................................................................TC-ATGACCATCCTTCTCTGTCCCTGT........................................................................26130.233300000
.........................................................................................................................................................GCTC-ATGACCATCCTTCTCTGTCCCTG.........................................................................27130.233300000
............................................................................................................................................................C-ATGACCATCCTTCTCTGTCCCTGTTC......................................................................27130.233300000
...........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCTTTCTC--T......................................................2790.222200000
........................................................................................................................................................................TTCTCTGTCCCTGTTCTGCTCGCTTTC...........................................................2790.222110000
.........................................................................................................................................................................TCTCTGTCCCTGTTCTGCTCGCTTTC...........................................................2690.222110000
.....................................................................................................................................................................TCCTTCTCTGTCCCTGTTCTGC...................................................................22100.202200000
...........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCT..............................................................21100.202110000
.............................................................................................................................TTTGTTTCCTCTTCTCCCAGTTCATG.......................................................................................................26150.203210000
.....................................................................................................................................................................TCCTTCTCTGTCCCTGTTCTGCTCGCT..............................................................27100.202110000
.................................................................................................................................................................ACCATCCTTCTCTGTCCCTGTTCTGC...................................................................26100.202110000
.....................................................................................................................................................TGCTGCTC-ATGACCATCCTTCTCTGTC.............................................................................27100.202110000
........................................................................................................................................................................TTCTCTGTCCCTGTTCTGCTCGCTT.............................................................25100.202110000
......................................................................................................................................................................CCTTCTCTGTCCCTGTTCTGCTCGC...............................................................25100.202200000
....................................................................................................................................................ATGCTGCTC-ATGACCATCCTTCTCTG...............................................................................26110.182200000
...........................................................................................................................................TCCCAGTTCATGCTGCTC-ATGACCATC.......................................................................................27110.182110000
........................................................................................................................................TTCTCCCAGTTCATGCTGCTC-ATGAC...........................................................................................26110.182020000
...........................................................................................................................................TCCCAGTTCATGCTGCTC-ATGAC...........................................................................................23120.172020000
................................................................................................................................................................................................TTCTC--TTCAGCCATTTCTATCTCGCC..................................2660.171010000
......................................................................................................................................TCTTCTCCCAGTTCATGCTGCTC-AT..............................................................................................25130.152200000
........................................................................................................................................TTCTCCCAGTTCATGCTGCTC-ATG.............................................................................................24130.152200000
..................................................................................................................................TTCCTCTTCTCCCAGTTCATGCTGC...................................................................................................25130.152110000
..................................................................................................................................TTCCTCTTCTCCCAGTTCATGCTGCTC-A...............................................................................................28130.152200000
...............................................................................................................................TGTTTCCTCTTCTCCCAGTTCATGCT.....................................................................................................26140.142110000
...............................................................................................................................................................TGACCATCCTTCTCTGTCCCTGTTC......................................................................25150.132200000
................................................................................................................................................................GACCATCCTTCTCTGTCCCTGTTCTG....................................................................26150.132200000
..........................................................................................................................TGTTTTGTTTCCTCTTCTCCCAGTTCA.........................................................................................................27170.122200000
..........................................................................................................................TGTTTTGTTTCCTCTTCTCCCAGT............................................................................................................24170.122200000
.....................................................TCATGACCTCTGTCCTTCCT.....................................................................................................................................................................................20170.122200000
............................................................................................................................................................................CTGTCCCTGTTCTGCTCGCTTTCTC--TT.....................................................2790.111100000
...............................................................................................................................................................................TCCCTGTTCTGCTCGCTTTCTC--TTCA...................................................2690.111100000
.....................................................................................................................................................................TCCTTCTCTGTCCCTGTTCTGCTCGCTTT............................................................2990.111100000
...........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCTTTCC..........................................................2590.111010000
..........................................................................................................................................................................CTCTGTCCCTGTTCTGCTCGCTTTCT..........................................................2690.111100000
..............................................................................................................................................................................GTCCCTGTTCTGCTCGCTTTCTC--TTCA...................................................2790.111100000
.................................................................................................................TTGTTTAGTTGTTTTGTTTCCTCTTC...................................................................................................................2690.111100000
...........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCTTTCTC--TT.....................................................2890.111100000
...........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCTTT............................................................2390.111100000
...........................................................................................................................................................................TCTGTCCCTGTTCTGCTCGCTTTCTC--.......................................................2690.111100000
....................................................................................................................................................................ATCCTTCTCTGTCCCTGTTCTGCTCGCT..............................................................28100.101100000
..................................................................................................................TGTTTAGTTGTTTTGTTTCCTCTTCTCCC...............................................................................................................29100.101100000
........................................................................................................................................................................TTCTCTGTCCCTGTTCTGCTCG................................................................22100.101010000
...................................................................................................................................................................CATCCTTCTCTGTCCCTGTTCTGCTCG................................................................27100.101100000
.........................................................................................................................................TCTCCCAGTTCATGCTGCTC-ATGACCATC.......................................................................................29100.101100000
......................................................................................................................................................GCTGCTC-ATGACCATCCTTCTCTGTCC............................................................................27100.101100000
.....................................................................................................................................................................TCCTTCTCTGTCCCTGTTCTGCTCT................................................................25100.101001000
......................................................................................................................................................................CCTTCTCTGTCCCTGTTCTGCTCGCC..............................................................26100.101010000
.....................................................................................................................................................................TCCTTCTCTGTCCCTGTTCTGCTCGC...............................................................26100.101100000
...............................................................................................................................................................TGACCATCCTTCTCTGTCCCTGTTCTGC...................................................................28100.101100000
......................................................................................................................................................GCTGCTC-ATGACCATCCTTCTCTGTCCC...........................................................................28100.101100000
........................................................................................................................................................................TTCTCTGTCCCTGTTCTGCTCGCT..............................................................24100.101100000
.....................................................................................................................................................TGCTGCTC-ATGACCATCCTTCTCTGTCCC...........................................................................29100.101100000
...........................................................................................................................................TCCCAGTTCATGCTGCTC-ATGACCATCCT.....................................................................................29110.091100000
.........................................................................................................................TTGTTTTGTTTCCTCTTCTCCCAGT............................................................................................................25110.091100000
........................................................................................................................................TTCTCCCAGTTCATGCTGCTC-ATGACC..........................................................................................27110.091100000
......................................................................................................................................TCTTCTCCCAGTTCATGCTGCTC-ATGACC..........................................................................................29110.091100000
...............................................................................................................................................AGTTCATGCTGCTC-ATGACCATCCT.....................................................................................25110.091100000
..................................................................................................................................................TCATGCTGCTC-ATGACCATCCTTCTCTG...............................................................................28110.091100000
.....................................................................................................................................................TGCTGCTC-ATGACCATCCTTC...................................................................................21110.091100000
...........................................................................................................................................TCCCAGTTCATGCTGCTC-ATGACCATCC......................................................................................28110.091100000
.........................................................................................................................TTGTTTTGTTTCCTCTTCTCCCAGTTCA.........................................................................................................28110.091100000
.........................................................................................................................................TCTCCCAGTTCATGCTGCTC-ATGACCA.........................................................................................27110.091100000
..................................................................................................................................................TCATGCTGCTC-ATGACCATCCTTCT..................................................................................25110.091100000
........................................................................................................................GTTGTTTTGTTTCCTCTTCTCCCAG.............................................................................................................25110.091100000
.........................................................................................................................................TCTCCCAGTTCATGCTGCTC-ATGACC..........................................................................................26110.091010000
........................................................................................................................................TTCTCCCAGTTCATGCTGCTC-ATGA............................................................................................25110.091100000
..............................................................................................................................................CAGTTCATGCTGCTC-ATGACCATCC......................................................................................25110.091100000
......................................................................................................................TAGTTGTTTTGTTTCCTCTTCTCCCAGT............................................................................................................28110.091100000
...........................................................................................................................................TCCCAGTTCATGCTGCTC-ATGACCAT........................................................................................26120.081100000
...................................................................................................................................TCCTCTTCTCCCAGTTCATGCTGCTC-A...............................................................................................27130.081100000
...........................................................................................................................................................TC-ATGACCATCCTTCTCTGTCCC...........................................................................23130.081010000
...................................................................................................................................TCCTCTTCTCCCAGTTCATGCTGCT..................................................................................................25130.081100000
.........................................................................................................................................................GCTC-ATGACCATCCTTCTCTGTCCC...........................................................................25130.081010000
......................................................................................................................................TCTTCTCCCAGTTCATGCTGCTC-A...............................................................................................24130.081100000
.................................................................................................................................TTTCCTCTTCTCCCAGTTCATGCTGCT..................................................................................................27130.081100000
.....................................................................................................................................CTCTTCTCCCAGTTCATGCTGCT..................................................................................................23130.081010000
...........................................................................................................................................................TC-ATGACCATCCTTCTCTGTCCCC..........................................................................24130.081010000
........................................................................................................................................TTCTCCCAGTTCATGCTGCTC-................................................................................................21130.081100000
...........................................................................................................................................................TC-ATGACCATCCTTCTCTGTCCCTGTT.......................................................................27130.081100000
...........................................................................................................................................................TC-ATGACCATCCTTCTCTGTCCCTGTTCT.....................................................................29130.081100000
...............................................TATGCTTCATGACCTCTGTCCTTCCT.....................................................................................................................................................................................26140.071010000
.................................................................................................................................TTTCCTCTTCTCCCAGTTCATGCTG....................................................................................................25140.071100000
...............................................TATGCTTCATGACCTCTGTCCTTC.......................................................................................................................................................................................24140.071100000
...........................................................................................................................................................TC-ATGACCATCCTTCTCTG...............................................................................19140.071100000
...............................................................................................................................................................TGACCATCCTTCTCTGTCCCTGTT.......................................................................24150.071100000
...............................................................................................................................TGTTTCCTCTTCTCCCAGTTCATGC......................................................................................................25150.071100000
............................................................................................................................TTTTGTTTCCTCTTCTCCCAGTTCATGC......................................................................................................28150.071100000
..............................................................................................................................TTGTTTCCTCTTCTCCCAGTTCATG.......................................................................................................25150.071100000
...............................................................................................................................................................TGACCATCCTTCTCTGTCCCTGTTCT.....................................................................26150.071100000
.............................................................................................................................TTTGTTTCCTCTTCTCCCAGTTC..........................................................................................................23170.061100000
..........................................................................................................................TGTTTTGTTTCCTCTTCTCCCAGTT...........................................................................................................25170.061100000
droBip1
C---------------------------CCTTCAGTCAGCTCGATGGTATGTTTCATGACCGCAGTCCTTCCTAATCCACTTTCTTCGAAATTCAGGAAGGATTT-TTGGAGACTCTCCAGGTGTTTACTCTCCGCTTCACTCAATTTATGATGTTC-ATGTTTACCTTGCTCCGCAACTGTTCTGCTCGTCTCCTC--CTGGGCCATTTCTACTTCGTCT---------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
G-------------------CTACTGCTCCTTCTACCAGGTCGATAGCGTGCTTCATCTTGCTCGTCCTTCCTAGACCGTTCGCTTCAAACGTCAAGAAGGACTC-GCGGATTTCCTGTAATCATTCCCTTTGCTCTTCCGTCAGGTTGTGCGCCTCC-GGTTCCTCCTTCTGCTCTTTTTCCGAGACTACCTCCTC--CTGAATCGACTCTAGCTCG------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
A----------------AAGGTTCTGCTCCTTCCACAAGCTGGATACGGTGCTTCTCCACCGCTGTCTTCCCTAGTCCGACGTCTTCAAACGCAAGGAACTCCTT-TTTCACCGTTTCTAACTGCTTCTTTTCCTCCTCTTCCAGGTCCCATTCTTCA------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
C--------------------------CCCCTCTACCAGCTCAATCGTGTGCTTCATTACACTTGTTCTTCCAAGGCCGTGCTCTTCATAGGACAGAAAGGACTT-TTTGATCTCCTGTACTTGTGCTTCCTGCTCCGCATCCAACTCGTGTGATTCT-GGCTCCATTTTCTCCT-----------------------------GTTTTCCTATCTCTCTC---------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
G-------------------CC---------A--------------------------------------------------------------------------------------------------------------------------TTC-ACATCCAGCTTTCTCTGTCTCT------CTCTCTCTCTC--TCTCTCTCTCTCTCTCTCTCCT---------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................CTGTCTCT------CTCTCTCTCTC--TCTCT..................................................24200.0510000000010
...................................................................................................................................................................................................TC--TCTCTCTCTCTCTCT........................................17200.0510000000010
droPer2
C----------------------------CCTCGATCAACTGGATCCGATGCTGCTCTACCGTCGTTGTTCCTAATCCGGCATCCTCATAGGTCAGAAACTCCTT-CTTTACCTTCTCCAGCTCTTCGGTTTCCGTGTCGTCCAGGGTCCAAGCTTCCACATCCACGTCCTCCTGGCGGTGTTCGGCGTACTGGCTGATTTGTGACATTTGGATCTCGCCTACTTGGGC-------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................TTTGTGACATTTGGATCTCGCCT.................................23152.87433940000
............................................TCCGATGCTGCTCTACCGTCGTTG..........................................................................................................................................................................................2452.40120120000
.......................................................................................................................................................................................................TTGTGACATTTGGATCTCGCCTACT..............................25152.27342320000
......................................................................................CATAGGTCAGAAACTCCTT-CTTTACC.............................................................................................................................................2672.00140140000
......................................................................................................................................................................................................TTTGTGACATTTGGATCTCGCCTACT..............................26151.20180180000
...................................................................................................................................TCCGTGTCGTCCAGGGTCCAAGCT...................................................................................................2411.001010000
......................................................................................CATAGGTCAGAAACTCCTT-CTTTACCT............................................................................................................................................2770.866060000
.......................................................................................................................................................................................................TTGTGACATTTGGATCTCGCCTAC...............................24150.73110110000
.......................................................................................................................................................................................................TTGTGACATTTGGATCTCGCCTACTT.............................26150.67100100000
.......................................................................................ATAGGTCAGAAACTCCTT-CTTTACC.............................................................................................................................................2570.574040000
.........................................................TACCGTCGTTGTTCCTAATCCGGCATCC.........................................................................................................................................................................2820.501010000
........................................................................................................................................................................................................TGTGACATTTGGATCTCGCCTACT..............................24150.477070000
......................................................................................CATAGGTCAGAAACTCCTT-CTTTAC..............................................................................................................................................2570.433030000
.......................................................................................................................................................................................................TTGTGACATTTGGATCTCGCCTA................................23150.406060000
.......................................................................................................................................................................................................TTGTGACATTTGGATCTCGCCT.................................22150.406510000
.......................................................................................................................................................................................................TTGTGACATTTGGATCTCGCCTACTTG............................27150.335050000
........................................................................................TAGGTCAGAAACTCCTT-CTTTACCT............................................................................................................................................2570.292200000
.......................................................................................ATAGGTCAGAAACTCCTT-CTTTACCT............................................................................................................................................2670.292020000
......................................................................................................................................................................................................TTTGTGACATTTGGATCTCGCCTAC...............................25150.274040000
......................................................................................................................................................................................................TTTGTGACATTTGGATCTCGCCTA................................24150.274040000
............................................TCCGATGCTGCTCTACCGTCGTT...........................................................................................................................................................................................2350.201010000
............................................TCCGATGCTGCTCTACCGTCGTTGT.........................................................................................................................................................................................2550.201010000
.............................................CCGATGCTGCTCTACCGTCGTTG..........................................................................................................................................................................................2350.201010000
...............................TCGATCAACTGGATCCGATGCTGCTC.....................................................................................................................................................................................................2650.201010000
......................................................................................................................................................................................................TTTGTGACATTTGGATCTCGCCG.................................23150.203300000
......................................................................................CATAGGTCAGAAACTCCTT-CTTTA...............................................................................................................................................2470.141010000
..........................................................................................GGTCAGAAACTCCTT-CTTTACC.............................................................................................................................................2270.141010000
.........................................................................................................................................................................................................GTGACATTTGGATCTCGCCTACT..............................23150.132020000
......................................................................................................................................................................................................TTTGTGACATTTGGATCTCGCC..................................22150.132200000
......................................................................................................................................................................................................TTTGTGACATTTGGATCTCGCCC.................................23150.132200000
...................................................................................................................................................................................................TGATTTGTGACATTTGGATCTCGCC..................................25150.132110000
......................................................................................................................................................................................................TTTGTGACATTTGGATCTCGCCTACTT.............................27150.132020000
..................................................................................TCCTCATAGGTCAGAAACTCCTT-CTT.................................................................................................................................................26150.071010000
........................................................................................................................................................................................................TGTGACATTTGGATCTCGCCT.................................21150.071010000
........................................................................................................................................................................................................TGTGACATTTGGATCTCGCCTAC...............................23150.071010000
............................................................................................................................................................................................TACTGGCTGATTTGTGACATTTGG..........................................24150.071010000
......................................................................................................................................................................................................TTTGTGACATTTGGATCTCGCCTACTTG............................28150.071010000
...................................................................................................................................................................................................TGATTTGTGACATTTGGATCTCGCCT.................................26150.071100000
.......................................................................................................................................................................................................TTGTGACATTTGGATCTCGCCTAA...............................24150.071010000
.......................................................................................................................................................................................................TTGTGACATTTGGATCTCGCCTACC..............................25150.071100000
......................................................................................CATAGGTCAGAAACTCCTT-CTTT................................................................................................................................................23160.061010000
......................................................................................CATAGGTCAGAAACTCCTT-CTT.................................................................................................................................................22160.061010000
..........................................................................................................................................................................................................TGACATTTGGATCTCGCCTA................................20160.061100000
...................................................................................................................CTCCAGCTCTTCGGTTTCCGTG.....................................................................................................................22180.061010000
..................................................................................................................TCTCCAGCTCTTCGGTTTCCGTG.....................................................................................................................23180.061010000
droWil2
A-------------------AC---------A---------------------------------------------------------------------ATTTTTTTTTTTTTGTATACATATATCATTTCATTTTTTCTCGAT------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
C----------------------------CTTCCACTAAGTCGATAGTGTGCTTCTCTAAGTCTGGCGTTGCTAATCCGCTATGCTCAAAAGACAAAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................TTCTCTAAGTCTGGCGTTGCTAATCCG...............................................................................................................................................................................2711.001000000000000000000000000000000000000100000000000000000000000000
....................................................TTCTCTAAGTCTGGCGTTGCTAATCCGC..............................................................................................................................................................................2811.001000000000000000000000000010000000000000000000000000000000000000
.........................................................TAAGTCTGGCGTTGCTAATCCGC..............................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................TCTAAGTCTGGCGTTGCTAATCCGC..............................................................................................................................................................................2511.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................CTAATCCGCTATGCTCAAAAGACAA..............................................................................................................................................................2530.331000000000000000000000000010000000000000000000000000000000000000
...............................................TGTGCTTCTCTAAGTCTGGCGTTAA......................................................................................................................................................................................2550.201000000000000000000000000100000000000000000000000000000000000000
....................................................TTCTCTAAGTCTGGCGTT........................................................................................................................................................................................1850.201000000000000000000000001000000000000000000000000000000000000000

Generated: 05/18/2015 at 07:03 AM