ID:

dan_3318

 Coordinate:

scaffold_13417:2325460-2325610 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.6 -9.5 -9.3 -9.2

Flybase annnotation

CDS [Dana\GF20475-cds]; exon [dana_GLEANR_2881:1]; intron [Dana\GF20475-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_12916:5815554-5815576 +
  2. scaffold_12929:1884707-1884729 +
  3. scaffold_12929:1884953-1884975 +
  4. scaffold_12929:1996005-1996027 +
  5. scaffold_12929:2986819-2986841 +
  6. scaffold_13047:1345328-1345350 +
  7. scaffold_13117:2898835-2898857 +
  8. scaffold_13248:306717-306739 +
  9. scaffold_13266:7297157-7297179 +
  10. scaffold_13266:10933500-10933522 +
  11. scaffold_13266:17992425-17992447 +
  12. scaffold_13337:12094220-12094242 +
  13. scaffold_13337:16233513-16233535 +
  14. scaffold_13340:187726-187748 +
  15. scaffold_13340:693300-693322 +
  16. scaffold_13340:2605075-2605097 +
  17. scaffold_13340:5386263-5386285 +
  18. scaffold_13417:165785-165807 +
  19. scaffold_13417:2253157-2253179 +
  20. dan_3318  scaffold_13417:2325527-2325549 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CATCCAGCGATTGCAGCAACAGCGGGCCGCCATGCTGGCCGCTCGCAACGGTGCCGGCGGGCAGATTCCGCCTCCGCCCCCGCCCGTTGGCAGTGCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAACAACAATCGCATCAGCAACCTCATCATGGGACGATGCAGCAGCAGCCGTCGGAGGAGGACCTCCAGGGGGTCTGCACCGAGTGTGCCGAGTGCGCCGAGTGTGCTGCCA
*********************************************************************************************************************((................((.((..........(((((......((((...))))..))))).)).)).))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 V039
embryo
 M058
embryo
 V055
head
 V105
male body		 M044
female body
..................................................................................................................................................................................................................GGTCTGCACCGAGTGTGCCGAGTGCGCC............. 28 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................TGGGACGATGCAGCAGCAGC............................................................... 20 0 1 1.00 1 1 0 0 0 0 0
........GATTGCAGAAACAGCGGGACT.............................................................................................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0
......................................................................................................................................................................CATGGGACGATGCCGCAA................................................................... 18 2 3 0.33 1 0 1 0 0 0 0
.....................................................................................................................................................................TCAGGGAACGATGCAGCAGT.................................................................. 20 3 5 0.20 1 0 0 0 1 0 0
...........................................CGCAACGGTGCCGGCGTC.............................................................................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 1 0
..........................................................GGCCAGACTCCGCCTCCGTCCC........................................................................................................................................................................... 22 3 5 0.20 1 0 1 0 0 0 0
.....................................................................................................................GCAGCAACAGCAACAGCAGCAGC............................................................................................................... 23 0 20 0.15 3 0 0 2 0 0 1
.......................................................................................................................AGCAACAGCAACAGCAGCAGC............................................................................................................... 21 0 20 0.10 2 1 0 1 0 0 0
...............................................................................................................GCAGCAGCAGCAACAGCAACAGC..................................................................................................................... 23 0 20 0.10 2 1 0 1 0 0 0
..........................................TCGCAGCGGGGCCGGCTGGC............................................................................................................................................................................................. 20 3 13 0.08 1 0 0 0 1 0 0
................................TGATGGCCGCTCGAAACAG........................................................................................................................................................................................................ 19 3 14 0.07 1 0 0 0 1 0 0
................................................................................................................................AACAGCAGCAGCAACAACA........................................................................................................ 19 0 20 0.05 1 0 0 0 0 0 1
................................................................................................................CAGCAGCAGCAACAGCAACAG...................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................AGCAGCAGCAGCAGCAGCAGCAAC.............................................................................................................................. 24 0 20 0.05 1 0 0 1 0 0 0
....................................................................................................CAGCAGCAGCAGCAGCAGCAGCAAC.............................................................................................................................. 25 0 20 0.05 1 0 0 1 0 0 0
...................................................................................................GCAGCAGCAGCAGCAGCAGCA................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0
..........................................................................................................CAGCAGCAGCAGCAGCAACAGCAAC........................................................................................................................ 25 0 20 0.05 1 0 0 1 0 0 0
.............................................................................................TGCGCAGCAGCAGCAGCAGCAGCA...................................................................................................................................... 24 1 20 0.05 1 0 0 1 0 0 0
.................................................................................................................AGCAGCAGCAACAGCAACAGCAGC.................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................GCAGCAACAGCAACAGCAGCAGCAAC............................................................................................................ 26 0 20 0.05 1 0 0 1 0 0 0
........................................................................................................AGCAGCAGCAGCAGCAGCAACAGCAACA....................................................................................................................... 28 0 20 0.05 1 0 0 1 0 0 0
...........................................................................................................AGCAGCAGCAGCAGCAACAGC........................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................TGCGCAGCAGCAGCAGCAGCAGC....................................................................................................................................... 23 1 20 0.05 1 0 0 1 0 0 0
.....................................................................................................AGAAGCAGCACCAGCAGCAGCAACAGC........................................................................................................................... 27 2 20 0.05 1 0 0 1 0 0 0
....................................................................................................................AGCAGCAACAGCAACAGCAGC.................................................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0
................................................................................................................CAGCAGCAGCAACAGCAAC........................................................................................................................ 19 0 20 0.05 1 0 0 0 0 0 1
........................................................................................................AGCAGCAGCAGCAGCAGCAACAGCA.......................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................CAGCAGCAGCAGCAGCAACAG............................................................................................................................ 21 0 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

GTAGGTCGCTAACGTCGTTGTCGCCCGGCGGTACGACCGGCGAGCGTTGCCACGGCCGCCCGTCTAAGGCGGAGGCGGGGGCGGGCAACCGTCACGGGTCGTCGTCGTCGTCGTCGTCGTCGTTGTCGTTGTCGTCGTCGTTGTTGTTAGCGTAGTCGTTGGAGTAGTACCCTGCTACGTCGTCGTCGGCAGCCTCCTCCTGGAGGTCCCCCAGACGTGGCTCACACGGCTCACGCGGCTCACACGACGGT
***************************************************************((................((.((..........(((((......((((...))))..))))).)).)).))********************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V106
head
 M058
embryo
 V055
head
 V105
male body
................................................ACCACGGCCGCCTCTCTAAG....................................................................................................................................................................................... 20 3 12 4.17 50 45 4 0 0 1
..............................................................................................................................................................................CTACGTCGTCGTCGGCTGC.......................................................... 19 1 3 0.33 1 0 0 1 0 0
..............................................................................................................................................GTTGTGAGCCAAGTCGTTGG......................................................................................... 20 3 10 0.10 1 1 0 0 0 0
.................................................CCACGGCCGCCTCTCTAA........................................................................................................................................................................................ 18 2 12 0.08 1 1 0 0 0 0
.................................................CCACGGCCGCCTCTCTAAGC...................................................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0
.............................................................................................................................................TGTTGTTAAAGTAGTCGTAGG......................................................................................... 21 3 14 0.07 1 1 0 0 0 0
..........................................................................GCGGGGGCGGGCAACGA................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 1 0
...........................................................................................................................................GTTGTTGATAGCGTAGTTGA............................................................................................ 20 3 20 0.05 1 0 1 0 0 0
.....................................................................CGGAGGCGCGCGCGGGAAA................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0
................................................................CAAGGCGGAGGCGGGGTC......................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13417:2325410-2325660 + dan_3318 CATCCAGCGATTGCAGCAACAGCGGGCCGCCATGCTGGCCGCTCGCAACG------------------------------------------------------------GTGCC---GGCGGGCAGATTCCGCCTCCGCCCCCGCCCGTTGGCAGTGCC---CAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCA------GCAGC---------------------------------------------AA-----------------------CAAC---------AATCGCATCAGCAACCTCATCATGGGAC---GA------------------TGCAGCAGCAGC---------CGTCGGAGGAGGACCTCCAGGGGGTCTGCACCGAGTGTGCCGAGTGCGCCGAGTGTGCTGCCA
droBip1 scf7180000395982:1339-1571 - TATCCAGCGGTTGCAGCAGCAGCGGGCTGCGATGCTGGCCGCTCGCAACA------------------------------------------------------------GTGCC---GGCGGACAGATACCTCCTCCGCCCCCGCCCGTTGGCAGTGCC---CAGCAGCAGCAGCAGCAACAGCAGCAGCAA-----------------------------------------------------------------------------------------CAAC---------AGGCGC---AGCAACCTCATCATGGGAC---GA------------------TGCAGCAGCAGC---------CGACGGAGGAGGACATCCAGGGGGTCTGCACCGAGTGTGCTGAGTGCGCCGAGTGTGCTGCCA
droKik1 scf7180000302264:369941-370221 + TATCCAGCGCCTCCAGCAGCAGCGCGCTGCCATGCTGGCCGCTCGCAATGGA---------------GCCACCGCTA---------------------------------CCAAT---GCTGGCCAGATACCGCCACCGCCACCGCCCGTAGGCACGGCC---CAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACA------ACAGCAGCA---------------GCAA---------CAGCATC------AG-----------------------CAAC---------AGTCGCATCAACAGCCGCATCATGGAGCTGCCA------------------TGCAGCAGCAGC---------AATCGGAAGAGGATCTGCAGGGCGTGTGCACAGAGTGTGCCGAGTGCGCCGAGTGCGCGGCCA
droFic1 scf7180000453882:692622-692893 + CATCCAGCGGCTGCAGCAGCAGCGTGCCGCGATGCTGGCTGCCCGCAACA------------------------------------------------------------CCACA---GGCGGTCAGATACCGCCCCCGCCCCCTCCGGTTGGCAGTGCCGCCCAACAGCAGCAACAGCAGCAGCAACAGCAGCAACAGCA------GCAGCAGCA---------------GCAG---------C------------AG-----------------------CAAC---------AGTCGCATCAGCAACCGCATCATGCGGC---AC------------------TGCAGCAGCAGCAGCAGCAATCGGCGGAGGAGGAGCTGCAGGGCGTCTGCACCGAGTGTGCCGAGTGCGCCGAGTGCGCGGCCA
droEle1 scf7180000490214:539495-539772 - CATTCAGCGCCTGCAACAGCAACGTGCCGCGATGCTGGCCGCCCGAAATA------------------------------------------------------------CCACAAGCGGTGGTCAGATACCACCTCCGCCCCCGCCCGTCGGCAGTGCC---CAGCAGCAGCAACAGCAGCAACAACAGCAGCAACAACA------ACAGCAGCA---------ACAACAACAA------CAGCAGCAGC------AG-----------------------CAAC---------AGCAACACCAGCAACCTCATCATGGAGC---AA------------------TGCAGCAGCAGC---------AATCGGAGGATGACCTGCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCA
droRho1 scf7180000779189:201985-202271 - CATTCAGCGCCTGCAACAACAGCGCGCCGCGATGCTGGCCGCCCGCAACA------------------------------------------------------------CCACC---AGCGGTCAGATACCGCCCCCGCCCCCGCCCGTCGGCAGTGCC---CAGCAGCAGCAGCAACAACAACAGCAACAGCAGCAGCAGCAGCAACAG------CAACA---------ACAA---------C--------------AGCAACAACAGCAGCAACAGCAGCCAC---------AGCCACACCAGCAACCTCATCATGAAGC---AC------------------TGCAGCAGCAGC---------AATCGGAGGAGGACCTGCAGGGCGTCTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCA
droBia1 scf7180000302126:3767455-3767744 + CATCCAGCGGCTGCAGCAGCAGCGCGCCGCCATGCTGGCCGCCCGCAACA------------------------------------------------------------CCACG---GGCGGTCAGATACCGCCCCCGCCCCCGCCCGTCGGCACTGCC---CAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAACAACAG------CAGCA---------ACAA---------C--------------AGCAGCAGCAACAGCAGCAGCAGCAAC---------AGTCGCACCAGCAACCTCATCATGGAGCTGCAC------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTCCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCA
droTak1 scf7180000415394:667312-667583 + CATCCAGCGCCTGCAGCAGCAGCGTGCCGCGATGTTGGCCGCCCGCAACA------------------------------------------------------------CCACA---AGCGGTCAGATTCCGCCCCCGCCCCCGCCCGTCGGCAGTGCC---CAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCA------GCAACAACAGCA------------GCAG---------CAACAACAG---CAA-----------------------CAGC---------AGTCACACCAGCAACCTCATCACGGAGC---AA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTGCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCA
droEug1 scf7180000409901:146195-146490 + CATTCAGCGTTTGCAACAACAGCGTGCCGCAATGTTGGCTGCCCGCAATA------------------------------------------------------------CCACA---GGCGGTCAGATACCGCCTCCGCCTCCACCCGTCGGCAGTGCC---CAGCAGCAGCAGCAACAACAACAACAGCAACAGCAGCAACAACAACAA------CAGCAGCAACAGCAACAA---------C--------------AGCAGCAGCAGCAGCAACAGCAACAAC---------AGCCACATCAGCAACCTCATCATGGAGC---TA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTCCAGGGCGTTTGCACTGAGTGTGCCGAGTGCGCCGAATGTGCGGCCA
dm3 chrX:10806688-10806950 + CATCCAGCGGCTGCAGCAGCAGCGTGCCGCAATGCTGGCCGCCCGCAACA------------------------------------------------------------CCACA---AGCGGTCAGATACCGCCACCACCCCCGCCCGTTGGCACTGCC---CAGCAGCAGCAACAGCAACAGCAACAGCAGCAGCAGCA------ACAACAGCA---------------ACAA---------CAGC---------AG-----------------------CAAC---------AGTCGCATCAGCAGCCGCATCATGGAGC---CA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTCCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCA
droSim2 x:10265042-10265313 + CATCCAGCGGCTGCAGCAGCAGCGTGCCGCAATGCTGGCCGCCCGCAACA------------------------------------------------------------CCACA---GGCGGTCAGATACCGCCCCCACCCCCGCCCGTTGGCACTGCT---CAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCA------GCAACAGCAGCA------------ACAA---------CAGCAGCAG---CAG-----------------------CAAC---------AGTCGCATCAGCAGCCGCATCATGGAGC---CA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTCCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCA
droSec2 scaffold_15:1510058-1510326 + CATCCAGCGGCTGCAGCAGCAGCGTGCCGCAATGCTGGCCGCCCGCAACA------------------------------------------------------------CCACA---AGCGGTCAGATACCGCCCCCACCCCCGCCCGTTGGCACTGCT---CAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCA------ACAGCAGCA---------------ACAA---------CAGCAGCAGC---AG-----------------------CAAC---------AGTCGCATCAGCAGCCGCATCATGGAGC---CA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGAACTCCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCA
droYak3 X:11312527-11312813 - dya_1393 CATCCAGCGGCTGCAGCAGCAGCGTGCCGCAATGCTGGCCGCCCGCAACA------------------------------------------------------------CCACA---GGCGGTCAGATACCGCCCCCACCCCCGCCCGTTGGCACTGCT---CAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAG------CAGCA---------ACAG---------C--------------AGCAGCAACAGCAGCAGCAGCAGCAAC---------AGTCGCATCAGCAACCGCATCATGGAGC---CA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTCCAGGGCGTTTGCACCGAGTGTGCGGAGTGCGCCGAATGTGCGGCCA
droEre2 scaffold_4690:4320239-4320498 - der_371 CATCCAGCGGCTGCAGCAGCAGCGCGCCGCAATGCTGGCCGCCCGCAGTA------------------------------------------------------------CCACA---GGCGGGCAGATACCGCCCCCGCCCCCGCCCGTCGGCAGTGCC---CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACA------GCAGCAGCA---------------GCAA---------C------------AG-----------------------CAAC---------AGTCGCATCAGCAACCGCATCATGGAGC---CA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTGCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAGTGTGCGGCCA
dp5 XL_group1e:631624-631862 + dps_2605 GATCCAGCGCCTCCAGCAGCAGCGCGCCGCGATGCTGGCCGCCCGCAACA------------------------------------------------------------GCAC------CAGTCAGATACCGCCGCCACCGCCTCCTGTGGGCAGTGCC---CAGCAGCAGCAGCAGCAACAGCAGCCGCAGCAGCAACC------GCAACAGCAGCA------------GCAG---------CAGCAGCAG---CCA-----------------------CAGC---------A---------------------------------------------------GCAGAAACCGC---------AGTCGGAGGAGGACCTGCAGGGCGTCTGCACGGAGTGTGCCGAGTGCGCAGAATGCGCCGCCA
droPer2 scaffold_30:585668-585903 - GATCCAGCGCCTCCAGCAGCAGCGCGCCGCGATGCTGGCCGCCCGCAACA------------------------------------------------------------GCAC------CAGTCAGATACCGCCGCCACCGCCTCCTGTGGGCAGTGCC---CAGCAGCAGCAGCAGCAGCAACAGCAGCCGCAGCAGCA------ACCGCAGCA---------------GCAG---------CAGCAGCAGC---CA-----------------------CAGC---------A---------------------------------------------------GCAGAAACCGC---------AGTCGGAGGAGGACCTGCAGGGCGTCTGCACGGAGTGTGCCGAGTGCGCAGAATGCGCCGCCA
droWil2 scf2_1100000004515:859173-859477 + dwi_1040 GATTCAACGTTTGCAACAGCAACGTGCGGCCATGTTGGCCGCTCGTAATA------------------------------------------------------------GC------AACAGTCAAATACCGCCACCACCGCCACCCGTTGGAAGTGCT---CAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAACAACAG------CAGCA---------GCAA---------C---AACAA---CAG--------CAGCAGCAGCAGG---CTCAACAACACCAT---CAACAGCAGCAACATCATGGCAC---ACAGCAGCAACATCATGGTGTACAGCAGCAAC---------AGCCAGACGAGGACCTTCAGGGCGTTTGCACAGAATGTGCGGAATGCGCTGAATGCGCCGCCA
droVir3 scaffold_12928:401324-401586 + TATCCAGCGTCTGCAGCAGCAGCGTGCTGCGATGTTGGCGGCGCGCAACAGC---------------GGCA---------------------------------------GCAACAGCAACAGTCAAATACCGCCGCCGCCACCGCCCGCAGGCGGCGCT---CAGCAACAACAACAACAACAACAACAGCAACAACAGCA------ACAACAACA---------------GCAACAACAA---C---AACAA---CAG--------CAACAACAGCAGCAACA---------------------------------------------------------------ACAACAGCCGC---------TGCCCGATGAGGACCTGCAGGGCGTTTGCACCGAGTGCGCCGAGTGCGCTGAATGCGCCGCCA
droMoj3 scaffold_6328:450740-451020 - GATACAGCGTCTGCAGCAGCAGCGTGCCGCAATGTTGGCGGCGCGCAACG------------------------------------------------------------GCAATGGCAACAATCAAGTACCGCCACCGCCGCCGCCTGTGGGCAGCGCT---CAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCA------GCAGCAGCA---------------ACAA---------CAGCAGCAAC---AA-----------------------CAGC---------AGCAGCAACAACAACAGCATCATGCCAC---ATCCCAGCAGC---------AGCAGCAGCAGC---------AGGCCGATGAGGACCTGCAGGGCGTTTGCACTGAGTGCGCCGAGTGTGCCGAATGCGCCGCAA
droGri2 scaffold_15203:6833081-6833382 + GATACAGCGTCTGCAGCAGCAGCGGGCGGCAATGTTGGCGGCACGTAACGGTAACGGCAATGCGAGTGCCACTGCAACTGGGAATGGGAATTCCAATGGCACCGGCAATGGCAATGGCAACACCCAAATACCGCCACCCCCACCACCCGCTGGCAGTGCT---CAGCAACAGCAGCAGCAGCAGCAGCAGCAGCACCAACA------ACAACAACA---------------TCAA---------CAGCAGCAGCAGCAA-----------------------CAAC---------A------------------------------------------------------ATTACAGC---------CAACTGATGAGGAGCTGCAGGGCGTTTGCACCGAGTGCGCCGAGTGCGCCGAGTGTGCCGCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CATCCAGCGATTGCAGCAACAGCGGGCCGCCATGCTGGCCGCTCGCAACG------------------------------------------------------------GTGCC---GGCGGGCAGATTCCGCCTCCGCCCCCGCCCGTTGGCAGTGCC---CAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCA------GCAGC---------------------------------------------AA-----------------------CAAC---------AATCGCATCAGCAACCTCATCATGGGAC---GA------------------TGCAGCAGCAGC---------CGTCGGAGGAGGACCTCCAGGGGGTCTGCACCGAGTGTGCCGAGTGCGCCGAGTGTGCTGCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGCACCGAGTGTGCCGAGTGCGCC.............2811.001000001
.............................................................................................................................................................................................................................................................................................................................TGGGAC---GA------------------TGCAGCAGCAGC---------...............................................................2011.001000001
...........................................CGCAACG------------------------------------------------------------GTGCC---GGCGTC..................................................................................................................................................................................................................................................................................................................1850.201000010
.......................................................................................................................................................................................GCAGCAACAGCAACAGCA------GCAGC---------------------------------------------.............................................................................................................................................................................23200.153120000
.........................................................................................................................................................................................AGCAACAGCAACAGCA------GCAGC---------------------------------------------.............................................................................................................................................................................21200.102010001
.................................................................................................................................................................................GCAGCAGCAGCAACAGCAACAGC......................................................................................................................................................................................................................................23200.102010001
..................................................................................................................................................................................................AACAGCA------GCAGC---------------------------------------------AA-----------------------CAAC---------A......................................................................................................................................19200.051100000
..................................................................................................................................................................................CAGCAGCAGCAACAGCAACAG.......................................................................................................................................................................................................................................21200.051000001
.......................................................................................................................................................................AGCAGCAGCAGCAGCAGCAGCAAC...............................................................................................................................................................................................................................................24200.051010000
......................................................................................................................................................................CAGCAGCAGCAGCAGCAGCAGCAAC...............................................................................................................................................................................................................................................25200.051010000
.....................................................................................................................................................................GCAGCAGCAGCAGCAGCAGCA....................................................................................................................................................................................................................................................21200.051010000
............................................................................................................................................................................CAGCAGCAGCAGCAGCAACAGCAAC.........................................................................................................................................................................................................................................25200.051010000
...................................................................................................................................................................................AGCAGCAGCAACAGCAACAGCA------GC.............................................................................................................................................................................................................................24200.051001000
.......................................................................................................................................................................................GCAGCAACAGCAACAGCA------GCAGC---------------------------------------------AA-----------------------C...................................................................................................................................................26200.051010000
..........................................................................................................................................................................AGCAGCAGCAGCAGCAGCAACAGCAACA........................................................................................................................................................................................................................................28200.051010000
.............................................................................................................................................................................AGCAGCAGCAGCAGCAACAGC............................................................................................................................................................................................................................................21200.051000001
......................................................................................................................................................................................AGCAGCAACAGCAACAGCA------GC.............................................................................................................................................................................................................................21200.051010000
..................................................................................................................................................................................CAGCAGCAGCAACAGCAAC.........................................................................................................................................................................................................................................19200.051100000
..........................................................................................................................................................................AGCAGCAGCAGCAGCAGCAACAGCA...........................................................................................................................................................................................................................................25200.051000001
............................................................................................................................................................................CAGCAGCAGCAGCAGCAACAG.............................................................................................................................................................................................................................................21200.051010000
droBip1
TATCCAGCGGTTGCAGCAGCAGCGGGCTGCGATGCTGGCCGCTCGCAACA------------------------------------------------------------GTGCC---GGCGGACAGATACCTCCTCCGCCCCCGCCCGTTGGCAGTGCC---CAGCAGCAGCAGCAGCAACAGCAGCAGCAA-----------------------------------------------------------------------------------------CAAC---------AGGCGC---AGCAACCTCATCATGGGAC---GA------------------TGCAGCAGCAGC---------CGACGGAGGAGGACATCCAGGGGGTCTGCACCGAGTGTGCTGAGTGCGCCGAGTGTGCTGCCASizeHit CountTotal NormTotal
No Reads
droKik1
TATCCAGCGCCTCCAGCAGCAGCGCGCTGCCATGCTGGCCGCTCGCAATGGA---------------GCCACCGCTA---------------------------------CCAAT---GCTGGCCAGATACCGCCACCGCCACCGCCCGTAGGCACGGCC---CAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACA------ACAGCAGCA---------------GCAA---------CAGCATC------AG-----------------------CAAC---------AGTCGCATCAACAGCCGCATCATGGAGCTGCCA------------------TGCAGCAGCAGC---------AATCGGAAGAGGATCTGCAGGGCGTGTGCACAGAGTGTGCCGAGTGCGCCGAGTGCGCGGCCASizeHit CountTotal NormTotal
No Reads
droFic1
CATCCAGCGGCTGCAGCAGCAGCGTGCCGCGATGCTGGCTGCCCGCAACA------------------------------------------------------------CCACA---GGCGGTCAGATACCGCCCCCGCCCCCTCCGGTTGGCAGTGCCGCCCAACAGCAGCAACAGCAGCAGCAACAGCAGCAACAGCA------GCAGCAGCA---------------GCAG---------C------------AG-----------------------CAAC---------AGTCGCATCAGCAACCGCATCATGCGGC---AC------------------TGCAGCAGCAGCAGCAGCAATCGGCGGAGGAGGAGCTGCAGGGCGTCTGCACCGAGTGTGCCGAGTGCGCCGAGTGCGCGGCCASizeHit CountTotal NormTotal
No Reads
droEle1
CATTCAGCGCCTGCAACAGCAACGTGCCGCGATGCTGGCCGCCCGAAATA------------------------------------------------------------CCACAAGCGGTGGTCAGATACCACCTCCGCCCCCGCCCGTCGGCAGTGCC---CAGCAGCAGCAACAGCAGCAACAACAGCAGCAACAACA------ACAGCAGCA---------ACAACAACAA------CAGCAGCAGC------AG-----------------------CAAC---------AGCAACACCAGCAACCTCATCATGGAGC---AA------------------TGCAGCAGCAGC---------AATCGGAGGATGACCTGCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCASizeHit CountTotal NormTotal
No Reads
droRho1
CATTCAGCGCCTGCAACAACAGCGCGCCGCGATGCTGGCCGCCCGCAACA------------------------------------------------------------CCACC---AGCGGTCAGATACCGCCCCCGCCCCCGCCCGTCGGCAGTGCC---CAGCAGCAGCAGCAACAACAACAGCAACAGCAGCAGCAGCAGCAACAG------CAACA---------ACAA---------C--------------AGCAACAACAGCAGCAACAGCAGCCAC---------AGCCACACCAGCAACCTCATCATGAAGC---AC------------------TGCAGCAGCAGC---------AATCGGAGGAGGACCTGCAGGGCGTCTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCASizeHit CountTotal NormTotal
No Reads
droBia1
CATCCAGCGGCTGCAGCAGCAGCGCGCCGCCATGCTGGCCGCCCGCAACA------------------------------------------------------------CCACG---GGCGGTCAGATACCGCCCCCGCCCCCGCCCGTCGGCACTGCC---CAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAACAACAG------CAGCA---------ACAA---------C--------------AGCAGCAGCAACAGCAGCAGCAGCAAC---------AGTCGCACCAGCAACCTCATCATGGAGCTGCAC------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTCCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCASizeHit CountTotal NormTotal
No Reads
droTak1
CATCCAGCGCCTGCAGCAGCAGCGTGCCGCGATGTTGGCCGCCCGCAACA------------------------------------------------------------CCACA---AGCGGTCAGATTCCGCCCCCGCCCCCGCCCGTCGGCAGTGCC---CAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCA------GCAACAACAGCA------------GCAG---------CAACAACAG---CAA-----------------------CAGC---------AGTCACACCAGCAACCTCATCACGGAGC---AA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTGCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCASizeHit CountTotal NormTotal
No Reads
droEug1
CATTCAGCGTTTGCAACAACAGCGTGCCGCAATGTTGGCTGCCCGCAATA------------------------------------------------------------CCACA---GGCGGTCAGATACCGCCTCCGCCTCCACCCGTCGGCAGTGCC---CAGCAGCAGCAGCAACAACAACAACAGCAACAGCAGCAACAACAACAA------CAGCAGCAACAGCAACAA---------C--------------AGCAGCAGCAGCAGCAACAGCAACAAC---------AGCCACATCAGCAACCTCATCATGGAGC---TA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTCCAGGGCGTTTGCACTGAGTGTGCCGAGTGCGCCGAATGTGCGGCCASizeHit CountTotal NormTotal
No Reads
dm3
CATCCAGCGGCTGCAGCAGCAGCGTGCCGCAATGCTGGCCGCCCGCAACA------------------------------------------------------------CCACA---AGCGGTCAGATACCGCCACCACCCCCGCCCGTTGGCACTGCC---CAGCAGCAGCAACAGCAACAGCAACAGCAGCAGCAGCA------ACAACAGCA---------------ACAA---------CAGC---------AG-----------------------CAAC---------AGTCGCATCAGCAGCCGCATCATGGAGC---CA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTCCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................TCCAGGGCGTTTGCACCGAGTGTGCCGA....................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................................................................................................................................................CAGCAGCAGCA------ACAACAGCA---------------ACA....................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
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..................................................................................................................................................................................CAACAGCAACAGCAGCAGCAGCA------ACA............................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...........................................................................................................................................................................GCAACAGCAACAGCAACAGCAGCAGCAGC......................................................................................................................................................................................................................................29100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................ACAGCAGCAGCAGCA------ACA............................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................ACAGCAACAGCAGCAGCAGCA------A..............................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................GCAGCAGCAACAGCAACAGC.....................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................ACAGCAACAGCAACAGCAGCA...........................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................CA------ACAACAGCA---------------ACAA---------CAGC---------.............................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................AGCAACAGCAACAGCAACAGCAGCA...........................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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...............................................................................................................................................................................................AGCAGCAGCA------ACAACAGC.......................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................CAGCAGCA------ACAACAGCA---------------ACA....................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CAACAGCAACAGCAGCAG..........................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................AGCAGCAGCAGCA------ACAACAGCA---------------AC.....................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................GCAGCAACAGCAACAGCAACAGC...............................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................CAACAGCAACAGCAGCAGCAGC......................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AACAGCAGCAGCAGCA------ACAAC..........................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................................................ACAGCAGCAGCAGCA------ACAACAG........................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................CAACAGCAGCAGCAGCA------ACAA...........................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CAACAGCAACAGCAGCAGCAGCA------...............................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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...........................................................................................................................................................................................CAGCAGCAGCAGCA------ACAACAG........................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................AGCAACAGCAGCAGCAGCA------AC.............................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................GCAGCAACAGCAACAGCAA...................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CAGCA---------------ACAA---------CAGC---------AG-----------------------CAAC---------.......................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......................................................................................................................................................................................................CA------ACAACAGCA---------------ACAA---------CAGC---------A............................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................AGCAGCAGCAACAGCAACAGCAA...................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AACAGCAACAGCAGCAGCAGCA------...............................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................AGCAACAGCAACAGCAGCAG..........................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................AACAGCAACAGCAACAGCAGC............................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................CAACAGCAGCAGCAGCA------ACAACAGC.......................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................GCA------ACAACAGCA---------------ACAA---------CAGC---------A............................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................ACAGCAACAGCAACAGCAGCAGCA........................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CAGCAACAGCAGCAGCAGCA------...............................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................AGCAGCAACAGCAACAGCAACA.................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AGCAGCAGCAGCA------ACAACAGC.......................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................AACAGCA---------------ACAA---------CAGC---------AG-----------------------CA..................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................CAGCAACAGCAACAGCAGCAGCAGCA------...............................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................GCAGCA------ACAACAGCA---------------ACAA---------CA........................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GCAACAGCAGCAGCAGCA------AC.............................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................C---CAGCAGCAGCAACAGCA..........................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................AGCAGCAGCAACAGCAACAGCA....................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................AGCAGCAGCAACAGCAACA.......................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................GCAGCAGCAACAGCAACAGCA....................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................AGCAGCAGCA------ACAACAGCA---------------AC.....................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................ACAGCAGCAGCAGCA------ACAACAGCA---------------.......................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
CATCCAGCGGCTGCAGCAGCAGCGTGCCGCAATGCTGGCCGCCCGCAACA------------------------------------------------------------CCACA---GGCGGTCAGATACCGCCCCCACCCCCGCCCGTTGGCACTGCT---CAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCA------GCAACAGCAGCA------------ACAA---------CAGCAGCAG---CAG-----------------------CAAC---------AGTCGCATCAGCAGCCGCATCATGGAGC---CA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTCCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................ACAGCAGCAGCAGCA------GCAACAGCAG.....................................................................................................................................................................................................................25201.3026000002600000000000
.......................................................................................................................................................................AACAGCAGCAGCAACAGCAAC..................................................................................................................................................................................................................................................21200.05100000000000100000
....................................................................................................................................................................................ACAGCAACAGCAGCAGCA........................................................................................................................................................................................................................................18200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGC---------AGTC...........................................................15200.05100000000001000000
.......................................................................................................................................................................AACAGCAGCAGCAACAGCA....................................................................................................................................................................................................................................................19200.05100000000000100000
................................................................................................................................................................................................................CAACAGCAGCA------------ACAA---------CAGC......................................................................................................................................................................................19200.05100000000000100000
................................................................................................................................................................................................................CAACAGCAGCA------------ACAA---------CAGCAGC...................................................................................................................................................................................22200.05100000000000100000
......................................................................................................................................................................CAACAGCAGCAGCAACAGC.....................................................................................................................................................................................................................................................19200.05100000000001000000
...........................................................................................................................................................................................CAGCAGCAGCAGCA------GCAACAGC.......................................................................................................................................................................................................................22200.05100100000000000000
droSec2
CATCCAGCGGCTGCAGCAGCAGCGTGCCGCAATGCTGGCCGCCCGCAACA------------------------------------------------------------CCACA---AGCGGTCAGATACCGCCCCCACCCCCGCCCGTTGGCACTGCT---CAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCA------ACAGCAGCA---------------ACAA---------CAGCAGCAGC---AG-----------------------CAAC---------AGTCGCATCAGCAGCCGCATCATGGAGC---CA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGAACTCCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAATGTGCGGCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................GAGGAACTCCAGGGCGCC.....................................1860.1710010
...................................................................................................................................................................................................................CAGCA---------------ACAA---------CAGCAGCAGC---AG-----------------------....................................................................................................................................................21200.1530003
.......................................................................................................................................................................................................................................................CAGCAGC---AG-----------------------CAAC---------AGTCGC.................................................................................................................................1970.1410100
........................................................................................................................................................................................................................................CAA---------CAGCAGCAGC---AG-----------------------CAAC---------AGT....................................................................................................................................2270.1410010
.......................................................................................................................................................................................................................................ACAA---------CAGCAGCAGC---AG-----------------------CA..................................................................................................................................................18200.1020020
......................................................................................................................................................................................................................CA---------------ACAA---------CAGCAGCAGC---AG-----------------------C...................................................................................................................................................19200.1020020
........................................................................................................................................................................ACAGCAGCAGCAACAGCAACAG................................................................................................................................................................................................................................................22120.0810010
.....................................................................................................................................................................................CAGCAACAGCAGCAGCAGCA------ACAGCA.........................................................................................................................................................................................................................26180.0610010
........................................................................................................................................................................................................A------ACAGCAGCA---------------ACAA---------CAGCA.....................................................................................................................................................................................19200.0510010
........................................................................................................................................................................................CAACAGCAGCAGCAGCA------ACAGC..........................................................................................................................................................................................................................22200.0510010
..................................................................................................................................................................................CAACAGCAACAGCAGCAGC.........................................................................................................................................................................................................................................19200.0510010
...................................................................................................................................................................................AACAGCAACAGCAGCAGCAGC......................................................................................................................................................................................................................................21200.0510001
.....................................................................................................................................................................................................AGCA------ACAGCAGCA---------------ACAA---------CAGC......................................................................................................................................................................................21200.0510010
....................................................................................................................................................................................ACAGCAACAGCAGCAGCAGCA------ACA............................................................................................................................................................................................................................24200.0510010
.......................................................................................................................................................................................................................A---------------ACAA---------CAGCAGCAGC---AG-----------------------C...................................................................................................................................................18200.0510010
.....................................................................................................................................................................................................AGCA------ACAGCAGCA---------------ACAA---------CAGCAGC...................................................................................................................................................................................24200.0511000
....................................................................................................................................................................................................................AGCA---------------ACAA---------CAGCAGCAGC---AG-----------------------....................................................................................................................................................20200.0510010
.....................................................................................................................................................................................................AGCA------ACAGCAGCA---------------ACAA---------C.........................................................................................................................................................................................18200.0510010
.....................................................................................................................................................................................................AGCA------ACAGCAGCA---------------ACAA---------CAG.......................................................................................................................................................................................20200.0511000
...............................................................................................................................................................................................................ACAGCAGCA---------------ACAA---------CAGCAGCA..................................................................................................................................................................................21200.0511000
.........................................................................................................................................................................................AACAGCAGCAGCAGCA------ACAGCAGCA---------------.......................................................................................................................................................................................................25200.0510010
...............................................................................................................................................................................CAGCAACAGCAACAGCAGCAG..........................................................................................................................................................................................................................................21200.0510100
.................................................................................................................................................................................GCAACAGCAACAGCAGCAGCAGCA------...............................................................................................................................................................................................................................24200.0510001
...................................................................................................................................................................................................................CAGCA---------------ACAA---------CAGCAGCAGC---AG-----------------------CA..................................................................................................................................................23200.0510010
droYak3
CATCCAGCGGCTGCAGCAGCAGCGTGCCGCAATGCTGGCCGCCCGCAACA------------------------------------------------------------CCACA---GGCGGTCAGATACCGCCCCCACCCCCGCCCGTTGGCACTGCT---CAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAG------CAGCA---------ACAG---------C--------------AGCAGCAACAGCAGCAGCAGCAGCAAC---------AGTCGCATCAGCAACCGCATCATGGAGC---CA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTCCAGGGCGTTTGCACCGAGTGTGCGGAGTGCGCCGAATGTGCGGCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................CAACAACAGCAGCAGCA........................................................................................................................................................................................................................................17200.25500000000005
................................................................................................................................................................................................GCAGCAACAGCAGCAGCAG------CAGCA---------.......................................................................................................................................................................................................24200.10202000000000
....................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAGCAGCA..................................................................................................................................................24200.10202000000000
..................................................................................................................................................................................................................G------CAGCA---------ACAG---------C--------------AGCAGCAACAGCAGC............................................................................................................................................................26200.10202000000000
................................................................................................................................................................................................GCAGCAACAGCAGCAGCAG------CAG..................................................................................................................................................................................................................22200.10202000000000
.................................................................................................................................................................................GCAGCAACAACAGCAGCAGCAACAGCAGC................................................................................................................................................................................................................................29180.06100100000000
.........................................................................................................................................................................CAGCAGCAGCAGCAACAACAGCAGC............................................................................................................................................................................................................................................25200.05100000000001
...............................................................................................................................................................T---CAGCAGCAGCAGCAGCAGCAAC.....................................................................................................................................................................................................................................................23200.05100000000001
................................................................................................................................................................................AGCAGCAACAACAGCAGCAGCAACAGC...................................................................................................................................................................................................................................27200.05100100000000
..........................................................................................................................................................................................................................AGCA---------ACAG---------C--------------AGCAGCAACA.................................................................................................................................................................19200.05101000000000
......................................................................................................................................................................................AACAACAGCAGCAGCAACAGC...................................................................................................................................................................................................................................21200.05100000010000
.................................................................................................................................................................................GCAGCAACAACAGCAGCAGCAACAGC...................................................................................................................................................................................................................................26200.05101000000000
droEre2
CATCCAGCGGCTGCAGCAGCAGCGCGCCGCAATGCTGGCCGCCCGCAGTA------------------------------------------------------------CCACA---GGCGGGCAGATACCGCCCCCGCCCCCGCCCGTCGGCAGTGCC---CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACA------GCAGCAGCA---------------GCAA---------C------------AG-----------------------CAAC---------AGTCGCATCAGCAACCGCATCATGGAGC---CA------------------TGCAGCAGCAGC---------AGTCGGAGGAGGACCTGCAGGGCGTTTGCACCGAGTGTGCCGAGTGCGCCGAGTGTGCGGCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................GCAGCA---------------GCAA---------C------------AG-----------------------CAAC---------AGTCGC.................................................................................................................................2311.0010001000
..................................................................................................................................................................................................AGCAACA------GCAGCAGCA---------------GCAA---------C------------.............................................................................................................................................................................21200.0510100000
....................................................................................................................................................................................GCAGCAACAGCAGCAGCAACA------GCAGCAGC.......................................................................................................................................................................................................................29200.0510100000
...................................................................................................................................................................................................GCAACA------GCAGCAGCA---------------GCAA---------C------------AG-----------------------C...................................................................................................................................................23200.0511000000
....................................................................................................................................................................................................CAACA------GCAGCAGCA---------------GCAA---------C------------AG-----------------------C...................................................................................................................................................22200.0511000000
..............................................................................................................................................................CC---CAGCAGCAGCAGCAGCAGC........................................................................................................................................................................................................................................................21200.0510100000
dp5
GATCCAGCGCCTCCAGCAGCAGCGCGCCGCGATGCTGGCCGCCCGCAACA------------------------------------------------------------GCAC------CAGTCAGATACCGCCGCCACCGCCTCCTGTGGGCAGTGCC---CAGCAGCAGCAGCAGCAACAGCAGCCGCAGCAGCAACC------GCAACAGCAGCA------------GCAG---------CAGCAGCAG---CCA-----------------------CAGC---------A---------------------------------------------------GCAGAAACCGC---------AGTCGGAGGAGGACCTGCAGGGCGTCTGCACGGAGTGTGCCGAGTGCGCAGAATGCGCCGCCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................CAGCAACAGCAGCCGCAGCAGC.........................................................................................................................................................................................................................................2260.1710100000000
................................................................................................................................................................................AGCAACAGCAGCCGCAGCA...........................................................................................................................................................................................................................................1970.1410100000000
......................................................................................................................................................................CAGCAGCAGCAGCAACAGC.....................................................................................................................................................................................................................................................19200.1020200000000
.......................................................................................................................................................................................................CC------GCAACAGCAGCA------------GCAG---------CAGCA.....................................................................................................................................................................................23180.0610000100000
..................................................................................................................................................................................................................ACAGCAGCA------------GCAG---------CAGCAGCAG---..............................................................................................................................................................................22200.0510100000000
.........................................................................................................................................................................................................................CA------------GCAG---------CAGCAGCAG---CCA-----------------------CAGC---------.......................................................................................................................................22200.0510001000000
..................................................................................................................................................................................................................ACAGCAGCA------------GCAG---------CAGCAGCA..................................................................................................................................................................................21200.0510100000000
...............................................................................................................................................................................................................GCAACAGCAGCA------------GCAG---------CAGCA.....................................................................................................................................................................................21200.0510000100000
....................................................................................................................................................................AGCAGCAGCAGCAGCAACAGC.....................................................................................................................................................................................................................................................21200.0510100000000
.......................................................................................................................................................................................................CC------GCAACAGCAGCA------------GCAG---------CAG.......................................................................................................................................................................................21200.0510100000000
.................................................................................................................................................................................................................AACAGCAGCA------------GCAG---------CAGCAGCA..................................................................................................................................................................................22200.0510000100000
droPer2
GATCCAGCGCCTCCAGCAGCAGCGCGCCGCGATGCTGGCCGCCCGCAACA------------------------------------------------------------GCAC------CAGTCAGATACCGCCGCCACCGCCTCCTGTGGGCAGTGCC---CAGCAGCAGCAGCAGCAGCAACAGCAGCCGCAGCAGCA------ACCGCAGCA---------------GCAG---------CAGCAGCAGC---CA-----------------------CAGC---------A---------------------------------------------------GCAGAAACCGC---------AGTCGGAGGAGGACCTGCAGGGCGTCTGCACGGAGTGTGCCGAGTGCGCAGAATGCGCCGCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................GCAGCA------ACCGCAGCA---------------GCAG---------CAGC......................................................................................................................................................................................2330.331001000
..........................................................................................................................................................................................................................................G---------CAGCAGCAGC---CA-----------------------CAGC---------A---------------------------------------------------GCA................................................................................21120.081000010
................................................................................................................................................................................AGCAGCAACAGCAGCCGCA...........................................................................................................................................................................................................................................19130.081001000
......................................................................................................................................................................................AACAGCAGCCGCAGCAGC......................................................................................................................................................................................................................................18170.061010000
droWil2
GATTCAACGTTTGCAACAGCAACGTGCGGCCATGTTGGCCGCTCGTAATA------------------------------------------------------------GC------AACAGTCAAATACCGCCACCACCGCCACCCGTTGGAAGTGCT---CAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAACAACAG------CAGCA---------GCAA---------C---AACAA---CAG--------CAGCAGCAGCAGG---CTCAACAACACCAT---CAACAGCAGCAACATCATGGCAC---ACAGCAGCAACATCATGGTGTACAGCAGCAAC---------AGCCAGACGAGGACCTTCAGGGCGTTTGCACAGAATGTGCGGAATGCGCTGAATGCGCCGCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................AC---------AGCCAGACGAGGACCT...............................................1820.50100010
.........................................................................................................................................................................................................................................................ACAA---CAG--------CAGCAGCAGCA........................................................................................................................................................18200.45900090
...............................................................................................................................................................................................................ACAG------CAGCA---------GCAA---------C---AACA..................................................................................................................................................................................18200.35700070
.........................................................................................................................................................................................................................................................ACAA---CAG--------CAGCAGCAGCAGG---C..................................................................................................................................................2150.20100001
...............................................................................................................................................................................................................ACAG------CAGCA---------GCAA---------C---AACAA---CAG--------C..................................................................................................................................................................23200.15300030
.............................................................................................................................................................................................................................A---------GCAA---------C---AACAA---CAG--------CAGCA..............................................................................................................................................................19200.15300030
......................................................................................................................................................................................................ACAACAACAACAG------CAGCA---------GCAA---------C---......................................................................................................................................................................................23200.10200020
.................................................................................................................................................................................................CAGCAACAACAACAACAG------CAGCA---------GC.....................................................................................................................................................................................................25200.10201001
.................................................................................................................................................................................................................AG------CAGCA---------GCAA---------C---AACAA---CAG--------CA.................................................................................................................................................................22200.10200020
...................................................................................................................................................................................AGCAGCAGCAGCAACAGCAACAA....................................................................................................................................................................................................................................23200.10200020
...........................................................................................................................................................................................................................................................AA---CAG--------CAGCAGCAGCAGG---C..................................................................................................................................................19170.06100010
.........................................................................................................................................................................................................................................................ACAA---CAG--------CAGCAGCAGCAGG---...................................................................................................................................................20170.06100010
..............................................................................................................................................................CT---CAACAGCAGCAGCAGCAG.........................................................................................................................................................................................................................................................20180.06101000
..................................................................................................................................................................................CAGCAGCAGCAGCAACAG..........................................................................................................................................................................................................................................18200.05100010
..................................................................................................................................................................................................AGCAACAACAACAACAG------CAGCA---------GCAA---------C---......................................................................................................................................................................................27200.05100010
.................................................................................................................................................................................GCAGCAGCAGCAGCAACAGCA........................................................................................................................................................................................................................................21200.05100010
........................................................................................................................................................................GCAGCAGCAGCAGCAGCAGCAGC...............................................................................................................................................................................................................................................23200.05101000
.................................................................................................................................................................................................................AG------CAGCA---------GCAA---------C---AACAA---CAG--------CAGC...............................................................................................................................................................24200.05100010
................................................................................................................................................................................................ACAGCAACAACAACAACAG------CAG..................................................................................................................................................................................................................22200.05100001
.................................................................................................................................................................................................................AG------CAGCA---------GCAA---------C---AACAA---CAG--------CAGCA..............................................................................................................................................................25200.05100010
................................................................................................................................................................................................ACAGCAACAACAACAACAG------CAGCA---------.......................................................................................................................................................................................................24200.05100010
..............................................................................................................................................................................................CAACAGCAACAACAACAACAG------CAGCA---------G......................................................................................................................................................................................................27200.05100010
.........................................................................................................................................................................................................................CAGCA---------GCAA---------C---AACAA---CAG--------CAG................................................................................................................................................................21200.05101000
....................................................................................................................................................................................................................................................C---AACAA---CAG--------CAGCAGCAGCA........................................................................................................................................................20200.05101000
..................................................................................................................................................................................................................G------CAGCA---------GCAA---------C---AACAA---CAG--------CAGCAG.............................................................................................................................................................25200.05100010
.......................................................................................................................................................................AGCAGCAGCAGCAGCAGCAGC..................................................................................................................................................................................................................................................21200.05101000
....................................................................................................................................................................................................CAACAACAACAACAG------CAGCA---------GCAA---------C---AAC...................................................................................................................................................................................28200.05100010
...................................................................................................................................................................................................GCAACAACAACAACAG------CAGCA---------G......................................................................................................................................................................................................22200.05100010
...............................................................................................................................................................................................AACAGCAACAACAACAACAG------CAGCA---------GC.....................................................................................................................................................................................................27200.05101000
............................................................................................................................................................................................................ACAACAG------CAGCA---------GCAA---------C---AACAA---CA............................................................................................................................................................................24200.05100010
........................................................................................................................................................................................................................................................AACAA---CAG--------CAGCAGCAGCA........................................................................................................................................................19200.05101000
...............................................................................................................................................................................................AACAGCAACAACAACAACAG------CAGC.................................................................................................................................................................................................................24200.05101000
.........................................................................................................................................................................................................ACAACAACAG------CAGCA---------GCAA---------C---AA....................................................................................................................................................................................22200.05100010
.......................................................................................................................................................................................................................................GCAA---------C---AACAA---CAG--------CAGCAGCA...........................................................................................................................................................21200.05100010
.............................................................................................................................................................................................................................A---------GCAA---------C---AACAA---CAG--------CAGCAGCAGCA........................................................................................................................................................25200.05100010
.......................................................................................................................................................................................................CAACAACAACAG------CAGCA---------GCAA---------C---AA....................................................................................................................................................................................24200.05100010
droVir3
TATCCAGCGTCTGCAGCAGCAGCGTGCTGCGATGTTGGCGGCGCGCAACAGC---------------GGCA---------------------------------------GCAACAGCAACAGTCAAATACCGCCGCCGCCACCGCCCGCAGGCGGCGCT---CAGCAACAACAACAACAACAACAACAGCAACAACAGCA------ACAACAACA---------------GCAACAACAA---C---AACAA---CAG--------CAACAACAGCAGCAACA---------------------------------------------------------------ACAACAGCCGC---------TGCCCGATGAGGACCTGCAGGGCGTTTGCACCGAGTGCGCCGAGTGCGCTGAATGCGCCGCCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................ACA---------------------------------------------------------------ACAACAGCCGC---------TGCCCGA........................................................2111.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AGCAGCAACA---------------------------------------------------------------ACAACAGCCGC---------...............................................................2170.292002000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AACAGCAGCAACA---------------------------------------------------------------ACAACAGCC..........................................................................2260.171000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................AGCAACAACAACAACAACA.......................................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................CAACAGCA------ACAACAACA---------------GCAA...................................................................................................................................................................................................21200.102002000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................AACAACAACAACAACAACAGCAACA...........................................................................................................................................................................................................................................25200.102002000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AG--------CAACAACAGCAGCAACA---------------------------------------------------------------...................................................................................19200.102001000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................A---CAG--------CAACAACAGCAGCAAC...................................................................................................................................................20200.102000000000000000001000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................AA---C---AACAA---CAG--------CAACAACAGCAGCAAC...................................................................................................................................................27180.061000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................CAGCA------ACAACAACA---------------GCAAC..................................................................................................................................................................................................19200.051000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................CAA---C---AACAA---CAG--------CAACAACAGCAG.......................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................ACAACAGCA------ACAACAACA---------------GCAA...................................................................................................................................................................................................22200.051000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................CAACAACAGCA------ACAACAACA---------------GC.....................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CAACAACAACAGCAACAACAGC......................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CAA---CAG--------CAACAACAGCAGCAA....................................................................................................................................................21200.051000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................AACAACAACAACAGCAACAACAGCA------AC.............................................................................................................................................................................................................................27200.051000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................ACAACAACAACAGCAACAACAGCA------ACAAC..........................................................................................................................................................................................................................29200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................AGCA------ACAACAACA---------------GCAACAA................................................................................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................AACAGCAACAACAGCA------ACA............................................................................................................................................................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................CAACAACAACAACAGCAACAA..........................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AACAACAA---C---AACAA---CAG--------CAACAACA...........................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................CAA---C---AACAA---CAG--------CAACAACAGCAGCA.....................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................CAACAACAACAACAACAACAG................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................CAACAACAACAACAGCAAC............................................................................................................................................................................................................................................19200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................AACAACAGCA------ACAACAACA---------------GCAA...................................................................................................................................................................................................23200.051000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................G--------CAACAACAGCAGCAACA---------------------------------------------------------------AC.................................................................................20200.051000000000000000010000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CAA---CAG--------CAACAACAGCAGCA.....................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................................................................ACAACAACAACAACAACAGCA..............................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................CAGCAACAACAGCA------ACAACAAC.......................................................................................................................................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................A---------------GCAACAACAA---C---AACAA---CAG--------CA.................................................................................................................................................................22200.051000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................AACAA---C---AACAA---CAG--------CAACAAC............................................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................ACAACAGCAACAACAGCA------ACA............................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................A---CAG--------CAACAACAGCAGCAACA---------------------------------------------------------------AC.................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AACAGCA------ACAACAACA---------------GCA....................................................................................................................................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CAACAACA---------------GCAACAACAA---C---AA....................................................................................................................................................................................21200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
GATACAGCGTCTGCAGCAGCAGCGTGCCGCAATGTTGGCGGCGCGCAACG------------------------------------------------------------GCAATGGCAACAATCAAGTACCGCCACCGCCGCCGCCTGTGGGCAGCGCT---CAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCA------GCAGCAGCA---------------ACAA---------CAGCAGCAAC---AA-----------------------CAGC---------AGCAGCAACAACAACAGCATCATGCCAC---ATCCCAGCAGC---------AGCAGCAGCAGC---------AGGCCGATGAGGACCTGCAGGGCGTTTGCACTGAGTGCGCCGAGTGTGCCGAATGCGCCGCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................AACAACAGCATCATGCCAC---AT......................................................................................................2111.001100000
...........................................................................................................................................................................GCAGCAGCAGCAGCAGCAGCA..............................................................................................................................................................................................................................................21200.306000060
..................................................................................................................................................................................................................................................................A-----------------------CAGC---------AGCAGCAACAACAAC........................................................................................................................20200.051000001
.................................................................................................................................................................................GCAGCAGCAGCAGCAACAGCA........................................................................................................................................................................................................................................21200.051000010
.....................................................................................................................................................................................................AGCA------GCAGCAGCA---------------ACAA---------CAGCAGCAAC---.............................................................................................................................................................................27200.051100000
............................................................................................................................................................................................AGCAACAGCAGCA------GCAGCAGC.......................................................................................................................................................................................................................21200.051001000
..................................................................................................................................................................................................AGCAGCA------GCAGCAGCA---------------ACAA---------CAGCA.....................................................................................................................................................................................25200.051100000
..................................................................................................................................................................................................AGCAGCA------GCAGCAGCA---------------ACAA---------CAGCAGCA..................................................................................................................................................................................28200.051010000
droGri2
GATACAGCGTCTGCAGCAGCAGCGGGCGGCAATGTTGGCGGCACGTAACGGTAACGGCAATGCGAGTGCCACTGCAACTGGGAATGGGAATTCCAATGGCACCGGCAATGGCAATGGCAACACCCAAATACCGCCACCCCCACCACCCGCTGGCAGTGCT---CAGCAACAGCAGCAGCAGCAGCAGCAGCAGCACCAACA------ACAACAACA---------------TCAA---------CAGCAGCAGCAGCAA-----------------------CAAC---------A------------------------------------------------------ATTACAGC---------CAACTGATGAGGAGCTGCAGGGCGTTTGCACCGAGTGCGCCGAGTGCGCCGAGTGTGCCGCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................TGGGAATGGGAATTCCAATGGCA.........................................................................................................................................................................................................................................................................................................................................2311.00110
.......................................................................................................................................................................................................................................TCAA---------CAGCAGCAGCAGCAA-----------------------CAAC---------A------------------------------------------------------................................................................................24140.07110
.......................................................................................................................................................................................................CA------ACAACAACA---------------TCAA---------CAGCA.....................................................................................................................................................................................20200.05110

Generated: 05/18/2015 at 06:58 AM