dan_331

Name	Class	Family	Strand
Gypsy12_LTR	LTR	Gypsy	+
AT_rich	Low_complexity	Low_complexity	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCCAGCACAACAAATGCCGGGAGATCGATCTTTCGTCGAGGGATATGCTCGTGAGTTTGTTTTTCTAAATTTCTTTTATTAAATTTTTACAACAAAAATACCTGCATGCAATTATGATTTTTATGATTTAAAAATTTCAAAAAAAATTTATTTTTTTAATTGCCTGCTAGGTTTATTGCCACGATTTGCCACGATTAGGATAGAAATTCGAATTTTGTTTTTTTTTGTAAATCAATTATGCCGTTATTACA ************************************************(((..((((((.....((((((........))))))....))))))...(((((((.(((((((.((((((((.....)))))))).....(((((.....)))))))))))).))).)))).....((........))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	M044 female body	V106 head	M058 embryo	V039 embryo
...............................TTCGCCGAGAGATATGCTCGC.......................................................................................................................................................................................................	21	3	1	1.00	1	1	0	0	0	0
....................................................................................TTTTACAACATCAAGACCTGC..................................................................................................................................................	21	3	8	0.75	6	0	2	0	3	1
....GTACAACAAATGCAGGGAG....................................................................................................................................................................................................................................	19	2	3	0.33	1	0	0	1	0	0
..................GGGAGATCGATCTTTCGTCGAGG..................................................................................................................................................................................................................	23	0	4	0.25	1	0	1	0	0	0
.....................................................................................TTTACAACATCAAGACCTGC..................................................................................................................................................	20	3	19	0.21	4	0	3	1	0	0
....................GAGATCGAGCTTTCGTCGAGGGA................................................................................................................................................................................................................	23	1	5	0.20	1	0	1	0	0	0
.............................CTTTCGTAGAGAGGTATGCT..........................................................................................................................................................................................................	20	3	11	0.09	1	1	0	0	0	0
.....................................................................................................................................ATTTCCAAAAAAATTTATT...................................................................................................	19	1	15	0.07	1	0	1	0	0	0
....................................................................................TTTTACAACATCAAGACCTG...................................................................................................................................................	20	3	16	0.06	1	0	1	0	0	0

AGGTCGTGTTGTTTACGGCCCTCTAGCTAGAAAGCAGCTCCCTATACGAGCACTCAAACAAAAAGATTTAAAGAAAATAATTTAAAAATGTTGTTTTTATGGACGTACGTTAATACTAAAAATACTAAATTTTTAAAGTTTTTTTTAAATAAAAAAATTAACGGACGATCCAAATAACGGTGCTAAACGGTGCTAATCCTATCTTTAAGCTTAAAACAAAAAAAAACATTTAGTTAATACGGCAATAATGT ************************************************(((..((((((.....((((((........))))))....))))))...(((((((.(((((((.((((((((.....)))))))).....(((((.....)))))))))))).))).)))).....((........))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V106 head	V105 male body
....................................................................................................................................TTAAAGGTTTTTTTAAATAA...................................................................................................	20	1	1	3.00	3	0	1	2	0
...............CGGCCCTCTAGCTAGAAAGCAGCT....................................................................................................................................................................................................................	24	0	3	1.33	4	3	1	0	0
...................CCTCTAGCTAGAAAGCAGCTCCCTAT..............................................................................................................................................................................................................	26	0	4	1.25	5	1	3	0	1
..........................................AATACGAACACTCAAACAAAAAG..........................................................................................................................................................................................	23	2	1	1.00	1	1	0	0	0
.........................................................ACCAAAAGATTTAAAGAAATTAAT..........................................................................................................................................................................	24	2	1	1.00	1	1	0	0	0
......................................................CCCACAAAAAGATTTAAAGAAATTAAT..........................................................................................................................................................................	27	3	1	1.00	1	1	0	0	0
..................CCCTCTAGCTAGAAAGCAGCTCCCTAT..............................................................................................................................................................................................................	27	0	4	1.00	4	1	3	0	0
......................CTAGCTAGAAAGCAGCTCCCTATAC............................................................................................................................................................................................................	25	0	3	0.67	2	0	2	0	0
...................CCTCTAGCTAGAAAGCAGCTCCCTATAC............................................................................................................................................................................................................	28	0	3	0.33	1	0	1	0	0
...............CGGCCCTCTAGCTAGAAAGCAGCTCCC.................................................................................................................................................................................................................	27	0	3	0.33	1	0	1	0	0
....................CTCTAGCTAGAAAGCAGCTCCCTATAC............................................................................................................................................................................................................	27	0	3	0.33	1	0	1	0	0
................GGCCCTCTAGCTAGAAAGCAGCTCCC.................................................................................................................................................................................................................	26	0	3	0.33	1	0	1	0	0
...............CGGCCCTCTAGCTAGAAAGCAGCTC...................................................................................................................................................................................................................	25	0	3	0.33	1	1	0	0	0
...............CGGCCCTCTAGCTAGAAAGCAGCTCCTT................................................................................................................................................................................................................	28	1	3	0.33	1	1	0	0	0
.................GCCCTCTAGCTAGAAAGCAGCTCCCT................................................................................................................................................................................................................	26	0	3	0.33	1	0	0	0	1
...............CGGCCCTCTAGCTAGAAAGCAGC.....................................................................................................................................................................................................................	23	0	3	0.33	1	1	0	0	0
..................CCCTCTAGCTAGAAAGCAGCTCCCT................................................................................................................................................................................................................	25	0	4	0.25	1	1	0	0	0
...............CGGCCCTCTAGCTAGAAA..........................................................................................................................................................................................................................	18	0	5	0.20	1	0	1	0	0
...............CGGCCCTCTAGCTAGAAAG.........................................................................................................................................................................................................................	19	0	5	0.20	1	0	1	0	0
......................................................CCAACCACAAGATTTAAAGAA................................................................................................................................................................................	21	3	5	0.20	1	1	0	0	0
.......................................................AAAGAAGAAGATTTAAAGAAA...............................................................................................................................................................................	21	2	8	0.13	1	1	0	0	0
.........................................................................................................................................................................................................................AAAAAAAATCATTTGGTTAATAG...........	23	3	9	0.11	1	0	0	1	0
.......................................................AAACATAAAGATTTAAAGAAAT..............................................................................................................................................................................	22	2	9	0.11	1	1	0	0	0
..................................................................................TAAAAATGTTGTAGTTCTGGA....................................................................................................................................................	21	3	12	0.08	1	0	1	0	0
.........................................................ACCAAAAGATTTAAAGAAAT..............................................................................................................................................................................	20	2	14	0.07	1	1	0	0	0
......................................................................................................................................................AAAAACATTAACGGACTAT..................................................................................	19	2	15	0.07	1	1	0	0	0
...........................................................CAAAAGATTTAAAGAAAGT.............................................................................................................................................................................	19	2	16	0.06	1	1	0	0	0
...................CCTCTAGCTCGAAAGCAGTTCC..................................................................................................................................................................................................................	22	2	18	0.06	1	1	0	0	0
........................................................AAAAAAAAGATTTAAAGAAA...............................................................................................................................................................................	20	1	18	0.06	1	1	0	0	0
.............................................................................................................................................................................................................AAAGCTCAAAACAAAAAAAAAC........................	22	2	20	0.05	1	1	0	0	0
......................................................AAAACAAAAAGATTTAAA...................................................................................................................................................................................	18	1	20	0.05	1	1	0	0	0
.......................................................AAACGCAAAGATTTAAAGAAA...............................................................................................................................................................................	21	2	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_12276:6469-6719 +	dan_331	TCCAGCACAACAAATGC--CGGGAGATCGATCTTTCGTCGAGGGAT---A-TGC-TCGTGAGTTTGTTTTT-----------------------C-TAAA------T--TTCTTTT---ATTAA-----------------ATTTTTACAACA-------------------------------------------------------------------------------------------AAAATACC----------------------------------T--------------------------------------------------------------------------------------------------------------------GCATGCAATTATGATTTTTATGATTTAAAAATTTCAAAAAAAA-TTTATTTT--------------------------TTTAATTGCCTGCTAGGTTTATTGCCACG--------------------------------ATTTGCCACGATTAGGATAGAAATTCGAATTT-TGTTT--TTTTTTGTAAATC----------------AAT--TATGCCGTTATTACA
droBip1	scf7180000396589:710918-711040 +		TTCAGCACGCCA-GCG---CGGGAGATCGATCTTTCGTCATGGAAA-----TGC-AAGTGAGTTTGTTT-T-----------------------C-TTAATTTATATTT--A-----------------------------CTTTTTACAAAAA-------------------------------------------------------------------------------------------------------------------------------AAAAAAA-------------------------------------------------------------------------------------------------------------TGAGCTGCATGAAATTATCATT----------------------------------TT------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------TG
droKik1	scf7180000299968:8436-8600 -		TCCAGCCTGTCT-GCGT--CGGGAGATCGATCGTCCGCCGAGGAAC---C-AGCTGTGTGAGTTTACTATA-------ATATT------------------------------------AATAA-----------------A--------------C------------------------------CAGAAA------------------------------------------------ACAAAAATATCGGTACTAATTAAATCCTTATAAACGAAAAAATAACACG--------------------------------------------------------------------------------------------------------------GCCGCAAA-------------------------TTTATAAAAAAAA-TTTCCTT-----------------------------------------------------------------------------------------------------------------------------TATT----------------------------------------------AA
droFic1	scf7180000453826:3797-3987 +		AAAT-TTTTTTT-ATAT--TAAATAAAT--------ACCGCCGATTGAA-AATATGGATTAACTTTAATTT-----------------------T-GAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGCCTACCAGGTTTATTGCCACGTTTATTATTTTATTGCCACGTTTATTATTTTTATTAGCCACGTTTAGAATAGTAATTTAAATTTTTGTTTATTTTTTTTTAAATT----------------AAT--TATGCCATCCTTACT
droEle1	scf7180000489041:1541-1682 -		TCCAGCCTGCCT-GCGC--CGGAAGATCGATCGTCCGCCGAGGAAC---C-AGCTGTGTGAGTTGTTTTAC-----------------------C-TTTATTTCAAATT----------ACTAA-----------------A--------------A------------------------------AAAAAA------------------------------------------------ATAAATATTTTG---CCAATTAAATTTTCATGAGCAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGAA-C-AT------------------------------------------------------------------------------------------------------------------------------AT----------------------------------------------AT
droRho1	scf7180000778164:86-368 +		TCCAGCCTACCT-GCGT--AGGGAGATCGATCATCCGCCGAGGAAT---C-AGCTGTGTGAGTTGTATCTTTTCCTTATTATTTATATACCTAATTA-------CACTT--CT-T---TCAAAC---------CA-AC-TG----------------AG--------------ATACA-----CTAAAAGAAATTTAATAATGAAAATTTAA-G------------------------------------------------------------AAACCAGAACCTTAAGTAAACTTAACATTTTAACCAATTACAAATTTGAATTTTTAACCAATTTATATATATATATATTATATTTTGTTTTCACACATATTGTAAACGTAAAT--AGTTAGATTGAGCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGGCATG
droBia1	scf7180000302408:3906263-3906340 -		TCCAGCCTGTAC-GATGAACGGAAGATCGATCTTTCGCCGATGGA-----AATCTGAGTGAGTTGTCTTTG-----------------------T-TTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------TGTA----------------------------------------------TT
droTak1	scf7180000410597:4494-4592 +		CTCGATTTTTTT-TGG------TA---------------------------------------------A------------------------TTA-------TATTT--TT-T---TATTATAA-A------------------------CAAAACA--------------ATACA------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------AATATAATTTTTAAAGTTTATTTTTGTCATAAAAAAATTT-T-TT------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------TT
droEug1	scf7180000409708:94211-94401 -		TCCAGCACTCCT-GCGC--CGGGAGATCGATCTTTCGCCGAGGAGA---G-TACCACGTGAGTTTGGTTTT-----------------------T-CTAAT-----A--TTT---------------------T---G-TAATGTTTACGAGA-----------------------------------------------------------------------------------------------------------------------------TAA--------------------------------------------------------------------------------------------------------------------------GCATGTACCTATAGTT----------------------------------CTTTTACAACTTAGCCTTACTTTAATTCTTTATTTACATTCTA--CTTCTTACC---------------------------------------------ATCTGCTTTAAACTCCATATGT-TAT--ATT----------------------------------------------TT
dm3	chr2L:22281311-22281478 -		T-CAGCTCATCT-GCGC--CGGGAGATCGATCTTTCGCCGAGGAGTGAA-AAGTTGAGTGAGTTTCATTTA-----------------------T-AAAA------C--TTTTTTTATTATTGGAA-ATATTCG---G-TA----------------AA--------------GTACG------------------------------------------------------------------------------------------------ACGATAAAATTTTACGGGAGGTCATCATTTTGATGGCGTAC-------------------------------------------------------------------------------------------------------------------------------AAAA-TTTCATT-----------------------------------------------------------------------------------------------------------------------------TATTT------------------------------------------TTATA
droSim2	node_101527:3811-3966 +		T-CAGCTCATCT-GCGC--CGGAAGATCGATCTTTCGCCGAGGAGTGAA-AA--TTTGTGAGTTTTATTTA-----------------------C-AAAA------A--TTTT-T---TATTGAAA-ATATTCC---A-CG----------------AA--------------ATACA------------------------------------------------------------------------------------------------CTGAGAAAAATTTAC-GGAGGTCATCATTTTGATGGTGAAC-------------------------------------------------------------------------------------------------------------------------------AAAA-TTAAATTT------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------TA
droSec2	scaffold_26:136166-136327 +		TTCAGCTCATCT-GCGC--CGGGAGATCGATCTTTCGCCGAGGAGTGAA-AAGTTGAGTGAGTTTCATTTA-----------------------C-AAAA------T--TTTTTTT---ATTGAAACATATTCT---G-TA----------------AC--------------ATACA------------------------------------------------------------------------------------------------CCGATA-AATTTTACAGGAGGTCATCATTTCGATGGCGTAC-------------------------------------------------------------------------------------------------------------------------------AATA-TTTCGTT-----------------------------------------------------------------------------------------------------------------------------TATT----------------------------------------------TT
droYak3	v2_chrUn_3637:527-796 +		TTCAGCACACCT-TCG---AGGGAGATCGATCTTTCGCCGATGGAT---A-AAATGCGTGAGTTTATATAA-----------------------C-TTTGTTTTTAAGT----------GCTAA--CC-----CAAACTTA----------------AGAGACATTTATTAAATGGCAATGATATAAAAGAAATTAAGAAACGAA--TTAAATGCCGCAACAACCAAAATTTGGCTATCGCTTAAATATTTTT---TTTTTAAATTTGTCGTGAATTAAAA---------------------------------------------------------------------------------------------------------TGAAGTTTAATTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATTAAAAGAAATTTCACAATGGAGAAGTTGTCTACCAT-----TA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TCCAGCACAACAAATGC--CGGGAGATCGATCTTTCGTCGAGGGAT---A-TGC-TCGTGAGTTTGTTTTT-----------------------C-TAAA------T--TTCTTTT---ATTAA-----------------ATTTTTACAACA-------------------------------------------------------------------------------------------AAAATACC----------------------------------T--------------------------------------------------------------------------------------------------------------------GCATGCAATTATGATTTTTATGATTTAAAAATTTCAAAAAAAA-TTTATTTT--------------------------TTTAATTGCCTGCTAGGTTTATTGCCACG--------------------------------ATTTGCCACGATTAGGATAGAAATTCGAATTT-TGTTT--TTTTTTGTAAATC----------------AAT--TATGCCGTTATTACA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................GGGAGATCGATCTTTCGTCGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	1	0	0	0	0	0

droBip1

TTCAGCACGCCA-GCG---CGGGAGATCGATCTTTCGTCATGGAAA-----TGC-AAGTGAGTTTGTTT-T-----------------------C-TTAATTTATATTT--A-----------------------------CTTTTTACAAAAA-------------------------------------------------------------------------------------------------------------------------------AAAAAAA-------------------------------------------------------------------------------------------------------------TGAGCTGCATGAAATTATCATT----------------------------------TT------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------TG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCCAGCCTGTCT-GCGT--CGGGAGATCGATCGTCCGCCGAGGAAC---C-AGCTGTGTGAGTTTACTATA-------ATATT------------------------------------AATAA-----------------A--------------C------------------------------CAGAAA------------------------------------------------ACAAAAATATCGGTACTAATTAAATCCTTATAAACGAAAAAATAACACG--------------------------------------------------------------------------------------------------------------GCCGCAAA-------------------------TTTATAAAAAAAA-TTTCCTT-----------------------------------------------------------------------------------------------------------------------------TATT----------------------------------------------AA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAT-TTTTTTT-ATAT--TAAATAAAT--------ACCGCCGATTGAA-AATATGGATTAACTTTAATTT-----------------------T-GAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGCCTACCAGGTTTATTGCCACGTTTATTATTTTATTGCCACGTTTATTATTTTTATTAGCCACGTTTAGAATAGTAATTTAAATTTTTGTTTATTTTTTTTTAAATT----------------AAT--TATGCCATCCTTACT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCCAGCCTGCCT-GCGC--CGGAAGATCGATCGTCCGCCGAGGAAC---C-AGCTGTGTGAGTTGTTTTAC-----------------------C-TTTATTTCAAATT----------ACTAA-----------------A--------------A------------------------------AAAAAA------------------------------------------------ATAAATATTTTG---CCAATTAAATTTTCATGAGCAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGAA-C-AT------------------------------------------------------------------------------------------------------------------------------AT----------------------------------------------AT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCCAGCCTACCT-GCGT--AGGGAGATCGATCATCCGCCGAGGAAT---C-AGCTGTGTGAGTTGTATCTTTTCCTTATTATTTATATACCTAATTA-------CACTT--CT-T---TCAAAC---------CA-AC-TG----------------AG--------------ATACA-----CTAAAAGAAATTTAATAATGAAAATTTAA-G------------------------------------------------------------AAACCAGAACCTTAAGTAAACTTAACATTTTAACCAATTACAAATTTGAATTTTTAACCAATTTATATATATATATATTATATTTTGTTTTCACACATATTGTAAACGTAAAT--AGTTAGATTGAGCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGGCATG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCCAGCCTGTAC-GATGAACGGAAGATCGATCTTTCGCCGATGGA-----AATCTGAGTGAGTTGTCTTTG-----------------------T-TTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------TGTA----------------------------------------------TT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTCGATTTTTTT-TGG------TA---------------------------------------------A------------------------TTA-------TATTT--TT-T---TATTATAA-A------------------------CAAAACA--------------ATACA------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------AATATAATTTTTAAAGTTTATTTTTGTCATAAAAAAATTT-T-TT------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------TT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCCAGCACTCCT-GCGC--CGGGAGATCGATCTTTCGCCGAGGAGA---G-TACCACGTGAGTTTGGTTTT-----------------------T-CTAAT-----A--TTT---------------------T---G-TAATGTTTACGAGA-----------------------------------------------------------------------------------------------------------------------------TAA--------------------------------------------------------------------------------------------------------------------------GCATGTACCTATAGTT----------------------------------CTTTTACAACTTAGCCTTACTTTAATTCTTTATTTACATTCTA--CTTCTTACC---------------------------------------------ATCTGCTTTAAACTCCATATGT-TAT--ATT----------------------------------------------TT	Size	Hit Count	Total Norm	Total
No Reads

dm3

T-CAGCTCATCT-GCGC--CGGGAGATCGATCTTTCGCCGAGGAGTGAA-AAGTTGAGTGAGTTTCATTTA-----------------------T-AAAA------C--TTTTTTTATTATTGGAA-ATATTCG---G-TA----------------AA--------------GTACG------------------------------------------------------------------------------------------------ACGATAAAATTTTACGGGAGGTCATCATTTTGATGGCGTAC-------------------------------------------------------------------------------------------------------------------------------AAAA-TTTCATT-----------------------------------------------------------------------------------------------------------------------------TATTT------------------------------------------TTATA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................................TTACGGGAGGTCATCATTTTGATGGC................................................................................................................................................................................................................................................................................................................................	26	1	203.00	203	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44	0	2	13	0	25	2	0	1	2	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	2	2	95	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................TCATTTTGATGGCGTAC-------------------------------------------------------------------------------------------------------------------------------AA...........................................................................................................................................................................................	19	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TTTTGATGGCGTAC-------------------------------------------------------------------------------------------------------------------------------AAAA-........................................................................................................................................................................................	18	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................ATCTTTCGCCGAGGAGTGAA-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	1.35	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................................................................................................TAAAATTTTACGGGAGGTCATC...........................................................................................................................................................................................................................................................................................................................................	22	6	1.33	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................................CATCATTTTGATGGCGTAC-------------------------------------------------------------------------------------------------------------------------------AAAA-........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTCG---G-TA----------------AA--------------GTACG------------------------------------------------------------------------------------------------ACGATAAAATT..........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................A-ATATTCG---G-TA----------------AA--------------GTACG------------------------------------------------------------------------------------------------ACGATAAAAT...........................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................ACGATAAAATTTTACGGGAGGTC..............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTCG---G-TA----------------AA--------------GTACG------------------------------------------------------------------------------------------------ACGATAAAATTT.........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CATTTTGATGGCGTAC-------------------------------------------------------------------------------------------------------------------------------AAAA-TTTCATT-----------------------------------------------------------------------------------------------------------------------------T...................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TTGATGGCGTAC-------------------------------------------------------------------------------------------------------------------------------AAAA-TTTCATT-----------------------------------------------------------------------------------------------------------------------------TATTT------------------------------------------.....	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TGGCGTAC-------------------------------------------------------------------------------------------------------------------------------AAAA-TTTCATT-----------------------------------------------------------------------------------------------------------------------------TATT................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AATTTTACGGGAGGTCATCATTTTGA....................................................................................................................................................................................................................................................................................................................................	26	8	1.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0

droSim2

T-CAGCTCATCT-GCGC--CGGAAGATCGATCTTTCGCCGAGGAGTGAA-AA--TTTGTGAGTTTTATTTA-----------------------C-AAAA------A--TTTT-T---TATTGAAA-ATATTCC---A-CG----------------AA--------------ATACA------------------------------------------------------------------------------------------------CTGAGAAAAATTTAC-GGAGGTCATCATTTTGATGGTGAAC-------------------------------------------------------------------------------------------------------------------------------AAAA-TTAAATTT------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------TA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................................................................................TGAGAAAAATTTAC-GGAGGTCATCATT........................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0
.........................ATCGATCTTTCGCCGAGGAGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	14	3.07	43	0	0	0	0	0	0	0	24	1	18	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TTTAC-GGAGGTCATCATTTTGATGGT................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
..........................TCGATCTTTCGCCGAGGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	19	2.05	39	0	0	0	0	0	0	1	0	0	0	38	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TTTAC-GGAGGTCATCATTTTGATGG.................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
........................GATCGATCTTTCGCCGAGGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	14	1.29	18	0	0	0	0	0	11	0	0	0	1	6	0	0	0	0	0	0
..........................TCGATCTTTCGCCGAGGAGTGAA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	19	1.05	20	0	0	0	1	0	15	1	0	2	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................AAAATTTAC-GGAGGTCATCATTTTGA....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................CGGAAGATCGATCTTTCGCCGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................AAAAATTTAC-GGAGGTCATCATTTTGA....................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGAGAAAAATTTAC-GGAGGTCATCA..........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGAGAAAAATTTAC-GGAGGTCATCATTT.......................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................TCGATCTTTCGCCGAGGAGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	19	0.74	14	0	0	0	1	0	0	5	0	3	2	3	0	0	0	0	0	0
.........................ATCGATCTTTCGCCGAGGAGTGAA-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	14	0.50	7	0	0	0	1	0	0	0	2	0	2	2	0	0	0	0	0	0
.........................ATCGATCTTTCGCCGAGGAGTGAA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.50	7	0	0	0	0	0	0	0	6	0	1	0	0	0	0	0	0	0
..........................TCGATCTTTCGCCGAGGAGTGAA-AA--T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.50	3	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0
..........................TCGATCTTTCGCCGAGGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.40	8	0	0	0	0	0	0	0	1	2	0	5	0	0	0	0	0	0
.........................ATCGATCTTTCGCCGAGGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.35	7	0	0	0	0	0	0	0	2	0	4	1	0	0	0	0	0	0
........................GATCGATCTTTCGCCGAGGAGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.29	4	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0
..........................TCGATCTTTCGCCGAGGAGTGAA-AA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	19	0.26	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.....................................................................................................................................C---A-CG----------------AA--------------ATACA------------------------------------------------------------------------------------------------CTGAGAAAAATT.........................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................ATCGATCTTTCGCCGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0
..........................TCGATCTTTCGCCGAGGAGTGAA-AA--TT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................C---A-CG----------------AA--------------ATACA------------------------------------------------------------------------------------------------CTGAGA...............................................................................................................................................................................................................................................................................................................................................................	17	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................TCGATCTTTCGCCGAGGAGTGAA-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	19	0.16	3	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0
.................................TTCGCCGAGGAGTGAA-AA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
....................................GCCGAGGAGTGAA-AA--TT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................GCCGAGGAGTGAA-AA--T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................CCGAGGAGTGAA-AA--TT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................CGCCGAGGAGTGAA-AA--T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................ATCGATCTTTCGCCGAGGAGTGAA-TT--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	14	0.14	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..........................TCGATCTTTCGCCGAGGAGTGAT-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	19	0.11	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................GCCGAGGAGTGAA-AA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................TCTTTCGCCGAGGAGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................GATCGATCTTTCGCCGAGGAGTGAA-AA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	14	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................ATCGATCTTTCGCCGAGGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................ATCGATCTTTCGCCGAGGAGTGAA-AA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................GATCGATCTTTCGCCGAGGAGTGAA-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................TCGATCTTTCGCCGAGGAGTGAA-AT--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	19	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................AGATCGATCTTTCGCCGAGGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	19	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................GATCGATCTTTCGCCGAGGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	19	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................TCGATCTTTCGCCGAGGAGTGAA-TT--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	19	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................GATCGATCTTTCGCCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................CGCCGAGGAGTGAA-AA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................GATCTTTCGCCGAGGAGTGAA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................GATCTTTCGCCGAGGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................TCTTTCGCCGAGGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................TCGCCGAGGAGTGAA-AA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................TCGATCTTTCGCCGAGGAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................CTTTCGCCGAGGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................TCGATCTTTCGCCGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................TCTTTCGCCGAGGAGTGAA-AA--CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................TCGCCGAGGAGTGAA-AA--A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................GATCGATCTTTCGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTCAGCTCATCT-GCGC--CGGGAGATCGATCTTTCGCCGAGGAGTGAA-AAGTTGAGTGAGTTTCATTTA-----------------------C-AAAA------T--TTTTTTT---ATTGAAACATATTCT---G-TA----------------AC--------------ATACA------------------------------------------------------------------------------------------------CCGATA-AATTTTACAGGAGGTCATCATTTCGATGGCGTAC-------------------------------------------------------------------------------------------------------------------------------AATA-TTTCGTT-----------------------------------------------------------------------------------------------------------------------------TATT----------------------------------------------TT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................A-AAGTTGAGTGAGTTTCATTTA-----------------------C-AAAA------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	2.50	5	1	0	4	0
............................................................................................................................................................................................................................................................................................TTTACAGGAGGTCATCATTTCGATGGC................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	1	0	1	0
................................................A-AAGTTGAGTGAGTTTCATTTA-----------------------C-A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	1.50	3	1	1	1	0
................................................A-AAGTTGAGTGAGTTTCATTTA-----------------------C-AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	1.50	3	0	0	3	0
................................................A-AAGTTGAGTGAGTTTCATTTA-----------------------C-AAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	2	0
...........................................................................................................................................................................................................................................................................................TTTTACAGGAGGTCATCATTTCGA....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................TTACAGGAGGTCATCATTTCGATGGCGT..............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1
......................................................TGAGTGAGTTTCATTTA-----------------------C-AAAA------T--T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
......................................................TGAGTGAGTTTCATTTA-----------------------C-AAAA------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0
..........................TCGATCTTTCGCCGAGGAGTGAA-AAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.30	6	3	2	0	1
................................................A-AAGTTGAGTGAGTTTCATTTA-----------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	11	0.27	3	0	0	3	0
..........................TCGATCTTTCGCCGAGGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	3	1
TTCAGCTCATCT-GCGC--CGGGAGATCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	2	0	1	0
TTCAGCTCATCT-GCGC--CGGGAGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	2	0	0	0
......TCATCT-GCGC--CGGGAGATCGATCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0
................................TTTCGCCGAGGAGTGAA-AAGTTGAGTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0
................................TTTCGCCGAGGAGTGAA-AAGTTGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
..............CGC--CGGGAGATCGATCTTTCGCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0
.........................ATCGATCTTTCGCCGAGGAGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1
.........TCT-GCGC--CGGGAGATCGATCTTTCGCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0
.........................ATCGATCTTTCGCCGAGGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0
TTCAGCTCATCT-GCGC--CGGGAGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1
.......CATCT-GCGC--CGGGAGATCGATCTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0
...........T-GCGC--CGGGAGATCGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0
..........................TCGATCTTTCGCCGAGGAGTGAA-AAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0
..........................TCGATCTTTCGCCGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0
...AGCTCATCT-GCGC--CGGGAGATCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0
........ATCT-GCGC--CGGGAGATCGATCTTTCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1
.TCAGCTCATCT-GCGC--CGGGAGATCGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0
.....CTCATCT-GCGC--CGGGAGATCGATCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
............................GATCTTTCGCCGAGGAGTGAA-AAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
........................GATCGATCTTTCGCCGAGGAGTGAA-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0
...........T-GCGC--CGGGAGATCGATCTTTCGCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1
...........................CGATCTTTCGCCGAGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0
......TCATCT-GCGC--CGGGAGATCGATCTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
..........................TCGATCTTTCGCCGAGGAGTGAA-AAGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0

droYak3

TTCAGCACACCT-TCG---AGGGAGATCGATCTTTCGCCGATGGAT---A-AAATGCGTGAGTTTATATAA-----------------------C-TTTGTTTTTAAGT----------GCTAA--CC-----CAAACTTA----------------AGAGACATTTATTAAATGGCAATGATATAAAAGAAATTAAGAAACGAA--TTAAATGCCGCAACAACCAAAATTTGGCTATCGCTTAAATATTTTT---TTTTTAAATTTGTCGTGAATTAAAA---------------------------------------------------------------------------------------------------------TGAAGTTTAATTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATTAAAAGAAATTTCACAATGGAGAAGTTGTCTACCAT-----TA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......ACACCT-TCG---AGGGAGATCGATCTTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AACGAA--TTAAATGCCGCAACAACC......................................................................................................................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..........CT-TCG---AGGGAGATCGATCTTTCGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............G---AGGGAGATCGATCTTTCGCCGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.TCAGCACACCT-TCG---AGGGAGATCGATCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......ACACCT-TCG---AGGGAGATCGATCTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......ACACCT-TCG---AGGGAGATCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......ACACCT-TCG---AGGGAGATCGATCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
TTCAGCACACCT-TCG---AGGGAGATCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......CACCT-TCG---AGGGAGATCGATCTTTCGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

dan_331

scaffold_12276:6519-6669 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads