ID:

dan_3306

 Coordinate:

scaffold_13417:1886276-1886426 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.2 -14.2

Flybase annnotation

intron [Dana\GF20457-in]; CDS [Dana\GF20457-cds]; exon [dana_GLEANR_2863:5]; intron [Dana\GF20457-in]

Repeatable elements

NameClassFamilyStrand
Hoana8DNAhAT-hobo-
mature
  1. scaffold_5368:223-245 +
  2. scaffold_5368:733-755 +
  3. scaffold_8054:2749-2771 +
  4. scaffold_12576:12280-12302 +
  5. scaffold_12576:12815-12837 +
  6. scaffold_12606:165419-165441 +
  7. scaffold_12984:145951-145973 +
  8. scaffold_12984:342256-342278 +
  9. scaffold_13043:504586-504608 +
  10. scaffold_13076:130593-130615 +
  11. dan_3970  scaffold_13077:148765-148787 +
  12. scaffold_13112:32696-32718 +
  13. scaffold_13335:3158119-3158141 +
  14. scaffold_13337:11729564-11729586 +
  15. scaffold_13337:21494843-21494865 +
  16. scaffold_13340:11963700-11963722 +
  17. scaffold_13340:15657000-15657022 +
  18. scaffold_13499:1215068-1215090 +
  19. scaffold_13499:1323385-1323407 +
  20. scaffold_13767:2555-2577 +
  21. scaffold_3985:4875-4897 +
  22. scaffold_5086:4964-4986 +
  23. scaffold_5678:498-520 +
  24. scaffold_12158:1488-1510 +
  25. scaffold_12179:7337-7359 +
  26. scaffold_12276:12787-12809 +
  27. scaffold_12422:123335-123357 +
  28. scaffold_12555:12755-12777 +
  29. scaffold_12869:3475-3497 +
  30. scaffold_13082:316103-316125 +
  31. scaffold_13082:3416205-3416227 +
  32. scaffold_13230:2537332-2537354 +
  33. scaffold_13230:2798494-2798516 +
  34. scaffold_13248:3985576-3985598 +
  35. scaffold_13339:3290622-3290644 +
  36. scaffold_13339:3668021-3668043 +
  37. dan_3306  scaffold_13417:1886319-1886341 +
  38. scaffold_13417:2566602-2566624 +
  39. scaffold_13417:2888715-2888737 +
  40. scaffold_13767:1322368-1322390 +
star
  1. scaffold_3886:3103-3129 +
  2. scaffold_12902:6786-6812 +
  3. scaffold_12911:1965428-1965454 +
  4. scaffold_12911:1968225-1968251 +
  5. scaffold_12916:15582486-15582512 +
  6. scaffold_12933:43160-43186 +
  7. scaffold_12933:114650-114676 +
  8. scaffold_12944:43748-43774 +
  9. scaffold_12944:194613-194639 +
  10. scaffold_13021:184739-184765 +
  11. scaffold_13082:664745-664771 +
  12. scaffold_13088:48212-48238 +
  13. scaffold_13099:2402371-2402397 +
  14. scaffold_13230:3431755-3431781 +
  15. scaffold_13239:104093-104119 +
  16. scaffold_13250:1217557-1217583 +
  17. scaffold_13333:514917-514943 +
  18. scaffold_13337:20399888-20399914 +
  19. scaffold_13417:6539584-6539610 +
  20. scaffold_13499:527040-527066 +
  21. scaffold_5086:5000-5026 +
  22. scaffold_5678:534-560 +
  23. scaffold_12179:7373-7399 +
  24. scaffold_12555:12791-12817 +
  25. scaffold_13034:2052563-2052589 +
  26. scaffold_13045:232566-232592 +
  27. scaffold_13045:801055-801081 +
  28. scaffold_13099:2970233-2970259 +
  29. scaffold_13116:1596-1622 +
  30. scaffold_13228:620719-620745 +
  31. scaffold_13228:849746-849772 +
  32. scaffold_13230:3137365-3137391 +
  33. scaffold_13250:3248332-3248358 +
  34. scaffold_13250:3339266-3339292 +
  35. scaffold_13260:903426-903452 +
  36. scaffold_13266:16870154-16870180 +
  37. scaffold_13280:46961-46987 +
  38. dan_3306  scaffold_13417:1886355-1886381 +
  39. scaffold_13417:2888751-2888777 +
  40. scaffold_13767:1322404-1322430 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################--
ACTGTTATGTCAAGTAAAAATGTCAAATAAAAACAAGAAAGGAAAGCTAACGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTCAGTCGCAGTCCGCTAGGTGGCGCCACGCATCTTATATTATTAGATATATAGCGGATCGTATATAGTCGGCCGATCCTTATGAAATTTGGCAGATCAGATTGCTTTTCCCAAAATAGAATCTGTACCAAATCCCATCTTTCTAACTTAAAAAACACCAAAGTTATGT
*********************************************************************************************.((((((....(((...(((....((((((....))))))..)))...)))...))).)))..*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V105
male body		 V039
embryo
.............................................................................................TCCGCTAGGTGGCGCCACGCATC....................................................................................................................................... 23 0 20 0.65 13 13 0 0 0 0
.................................................................................................................................TATATAGCGGATCGTATATAGTCGGCC............................................................................................... 27 0 20 0.65 13 13 0 0 0 0
.........................................................................CCCTTGCAGTTCAGTCGCAGTCCGCTAG...................................................................................................................................................... 28 0 20 0.50 10 0 10 0 0 0
......................................................CGGAGCCGAAGTTGATATACCCTTG............................................................................................................................................................................ 25 0 20 0.35 7 0 7 0 0 0
...........................................................................................................................................................................................................TCTGTACCAAATCCCATCTTTC.......................... 22 0 20 0.35 7 7 0 0 0 0
......................................................................................................................................................................................................TAGAATCTGTACCAAATCCCATCTTT........................... 26 0 20 0.30 6 6 0 0 0 0
.......................................AAGGAAGCTAACGGGCGG.................................................................................................................................................................................................. 18 2 8 0.25 2 0 2 0 0 0
.......................................................................................TCGCAGTCCGCTAGGTGGC................................................................................................................................................. 19 0 20 0.20 4 4 0 0 0 0
.............................................................................TGCAGTTCAGTCGCAGTCCGCTAG...................................................................................................................................................... 24 0 20 0.10 2 0 0 2 0 0
......................................................................ATACCCTTGCAGTTCAGTCG................................................................................................................................................................. 20 0 20 0.10 2 0 2 0 0 0
..............................................................................GCAGTTCAGTCGCAGTCCGCTAGGTGG.................................................................................................................................................. 27 0 20 0.10 2 0 2 0 0 0
..............................................................................................................................................GTATATAGTCGGCCGATCCTT........................................................................................ 21 0 20 0.10 2 0 0 0 2 0
............................................................................TTGCAGTTCAGTCGCAGTCCGC......................................................................................................................................................... 22 0 20 0.10 2 0 0 2 0 0
...........................................................................................AGTCCGCTAGGTGGCGCCACG........................................................................................................................................... 21 0 20 0.10 2 0 0 0 2 0
.......................................................................................................................................................................................................AGAATCTGTACCAAATCCCAT............................... 21 0 20 0.10 2 0 2 0 0 0
......................................................................................................................................................................................................TAGAATCTGTACCAAATCCCATC.............................. 23 0 20 0.05 1 0 1 0 0 0
..................................................................................TTCAGTCGCAGTCCGCTAGGAGGCGC............................................................................................................................................... 26 1 20 0.05 1 0 0 0 1 0
.......................................................................................................................TATTATTAGATATATAGCGGATC............................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................TATAGCGGATCGTATATAGTCGGCCG.............................................................................................. 26 0 20 0.05 1 0 0 1 0 0
.............................................................................TGCAGTTCAGTCGCAGTCCG.......................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0
................................................................................................................................................ATATAGTCGGCCGATCCTTATGAAAT................................................................................. 26 0 20 0.05 1 0 1 0 0 0
..................................................................................TTCAGTCGCAGTCCGCTAGGTGGCGC............................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0
..........................................................................................................................................................................................................ATCTGTACCAAATCCCATCTTTCTA........................ 25 0 20 0.05 1 0 0 0 0 1
.............................................................................TGCAGTTCAGTCGCAGTCCGCTAGGTG................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
...........................................................................CTTGCAGTTCAGTCGCAGTCCGCTAGG..................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................GTATATAGTCGGCCGATCCTTATG..................................................................................... 24 0 20 0.05 1 0 0 0 0 1
...........................................................................CTTGCAGTTCAGTCGCAGTCC........................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0
....................................................GGCGGAGCCGAAGTTGATATACCC............................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
.................................................................TTGATATACCCTTGCAGTTCAGTCGCAG.............................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0
.......................................................................TACCCTTGCAGTTCAGTCGCAGTCCGC......................................................................................................................................................... 27 0 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TGACAATACAGTTCATTTTTACAGTTTATTTTTGTTCTTTCCTTTCGATTGCCCGCCTCGGCTTCAACTATATGGGAACGTCAAGTCAGCGTCAGGCGATCCACCGCGGTGCGTAGAATATAATAATCTATATATCGCCTAGCATATATCAGCCGGCTAGGAATACTTTAAACCGTCTAGTCTAACGAAAAGGGTTTTATCTTAGACATGGTTTAGGGTAGAAAGATTGAATTTTTTGTGGTTTCAATACA
***********************************************************************************************.((((((....(((...(((....((((((....))))))..)))...)))...))).)))..********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V105
male body		 V106
head
 V039
embryo
 V055
head
..........................................................................................GTCAGGCGATCCACCGCGGTGCGTAG....................................................................................................................................... 26 0 20 0.75 15 15 0 0 0 0 0
................................................TTGCCCGCCTCGGCTTCAACTA..................................................................................................................................................................................... 22 0 7 0.29 2 1 0 0 1 0 0
................................................TTGCCCGCCTCGGCTTCAACTAT.................................................................................................................................................................................... 23 0 7 0.29 2 1 1 0 0 0 0
................................................TTGCCCGCCTCGGCTTCAACTATAT.................................................................................................................................................................................. 25 0 5 0.20 1 0 1 0 0 0 0
................................................TTGCCCGCCTCGGCTTAAACTATAT.................................................................................................................................................................................. 25 1 5 0.20 1 1 0 0 0 0 0
.................................................TGCCCGCCTCGGCTTCAACTATATGGG............................................................................................................................................................................... 27 0 6 0.17 1 0 1 0 0 0 0
.................................................TGCCCGCCTCGGCTTCAACTA..................................................................................................................................................................................... 21 0 10 0.10 1 1 0 0 0 0 0
....................................................................................................CCACCGCGGTGCGTAGAATATAA................................................................................................................................ 23 0 20 0.10 2 0 2 0 0 0 0
...............................................TTTGCCCGCCTCGGCTTCAACTAT.................................................................................................................................................................................... 24 1 10 0.10 1 0 1 0 0 0 0
..........................................................................GGAACGTCAAGTCAGCGTCAGG........................................................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0
......................................................GCCTCGGCTTCAACTATATGGGAA............................................................................................................................................................................. 24 0 20 0.10 2 0 2 0 0 0 0
................................................TTCCCCGCCTCGACTTCAACTAT.................................................................................................................................................................................... 23 2 13 0.08 1 0 0 0 0 1 0
...............................................TTTGCCCGCTTCGGCTTCAACTATAT.................................................................................................................................................................................. 26 2 13 0.08 1 1 0 0 0 0 0
.................................................TGCGCGCCTCGGCTTCAACTAT.................................................................................................................................................................................... 22 1 16 0.06 1 0 1 0 0 0 0
................................................CTGCCCGCCTCGGCTTCAACTAT.................................................................................................................................................................................... 23 1 17 0.06 1 0 1 0 0 0 0
...................................................................................................................................................................................GTCTAACGAAAAGGGTTTTAT................................................... 21 0 17 0.06 1 0 0 1 0 0 0
...................................................................................................................................................................................GTCTAACGAAGAGGGTTTTAT................................................... 21 1 19 0.05 1 0 0 1 0 0 0
............................................................................................................................AATCTATATATCGCCTAGCATATATC..................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
TGACAATAAAGCTCATTTC........................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0
...................................................................CTATAAGGGAACGTCAAGTCAGCGT............................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................................................................................................GTTTAGGGTAGAAAGATTGAATTTT................ 25 0 20 0.05 1 1 0 0 0 0 0
.................................................TGACCGCCTCGGCTTCAACTATAT.................................................................................................................................................................................. 24 1 20 0.05 1 0 1 0 0 0 0
...CAATACACATCATTTTCAC..................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1
....................................................................................GTCAGCGTCAGGCGATCCACCG................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................ACATGGTTTAGGGTAGAAAGATTGAA.................... 26 0 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................AGAAAGATTGAATTTTTTGTG........... 21 0 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13417:1886226-1886476 + dan_3306 ACTGT--TATGTCAA----G--TAA---------AAA--TGT-CAAA---TAAAAACAAGAAAGGAAAGCTAACGG-GCG--------------GAGCCGAAGT-TGATATACCCTTGCAGTTCAG-TC------GC----AG----------------------TCCGCTA--------------------------------------------------GG--TGGCGCCACGCATCTTATA----TTATT-----------------------------------------------------AGATATATAGCGG--ATCGTATATAGTCGGCCGATCCTTATGAAATTTGGCAG------------------------------------------------------------------------------A------T-CAGA------------------TTGCTTTTCCCAAAATAGAATCTGTACCAAATCCCATC--TTT-CT----------AACTTAAAAA-------ACA-----CCAAA-----------------GTTATGT
droBip1 scf7180000396615:55680-55916 - ACTGT--ATG-GTAT----G-GTAA---------AAA--T---TAAA---AAAAAACAAGAAAGTAAAGCTAACTTCGGG------------CGGAGCCGAAGT-TGATATACCCTTGCAGTTGA-AACCGCATAT-----ACAA----------------------------CTAAT-----------------------------------------------------------------------------------------------------------------------------GTCAACATATATCGCAGACATCGGATATAGTTGGCCGATCCTTATGAAATTTGGTAG------------------------------------------------------------------------------G------T-TGGA------------------TCAACTGACCAAAAATAGAATCTGTATTAAATTCCAGC--TTT-CT----------ATTTTTAAAA-------ACA-----CGAAA-----------------GTTGGGT
droKik1 scf7180000302353:2069-2314 - ATTTT--TGTTTTAA----A-------TAATAAC-----------GATCGTAAAAACAAGAAAGGAA-GCTAACTTCGGC--------------ACGCCGAAGT-TTGTATACCCTTGCAGATTGC--A-----ATT----GG----------------------ATCATTAA--------------------------------------------------GAATCGAGCCATTCTTGTTAAA----TAATT-----------------------------------------------------A--------AA----AAA-----------------------AATATAAAAAAT-ATATTTAAAAGTTGTATATTTATACATAGCATGAATACATAACATTTTACCTATAGTTATTATGTTTACAG------T------T-TG-----------------------A------------------------CAGTCACAGT--TTC-TC-------------------------------------ATT-----------------GCTAGCT
droFic1 scf7180000453932:315597-315877 - AATAT--TAGTCAAA----------AATACGGAA-----------AATTAATGGAACAAGAAAGGAA-GCTAGCTTCGGC--------------AAGCCGAAGC-TTATATACCCTTGCAGTCAT--TA-----AAT----ATAA----------------------------TATGTCGAAGCTATGACGATTCTTCTATT----------------------------------CATT----------------------------------------------------------TTCCATATTGTTCATATGACAGCTATATAATATAGTCGTCCGATTTTGATGAAATTTAA--------------------------------------------------------------------------------TTTTAAACTC-AGGACTCATTAGAAAACTCTAT-ATTCCAA-------------------AAATCATAAT--TGT-CTGATG-----------AAAAA--------CC-----ACGATGCTATAATTTTATTTCCGTTATTT
droEle1 scf7180000491054:79739-79978 - TTAAA--AAA------------------------C-A--ACGCAATT---TAAAAAAAAGAAAGGAA-GCAAACTTCGGC--------------AAGCCGAAGT-TCATATACCCTTGCAGATGT--TC-----AA-----------AAGCATT-------------------------GAATCTATGATAATTC---------------------------------------------------------------------------------------------GCAGATCAATTATTTGATAGTTCTTATCACAGCTATATGATATTGTT-TCCGATTTTAATAAAATTAAAAAC-GTA-------------------------------------------------------------------------TTTCAAATTA-ATAATTAGTCAAAAA---------------------GAATTTCTAAA--A---------------------------------AAAATTACGAAAT------AAAAA-----------------GTTATAT
droRho1 scf7180000774318:41735-42011 - ACTGT--TATTTAAAAAACG-GAAA---------GAA--TTG-AAAT---AAAAAACAAGAAAGGAAAGCTAACTTCGGG------------CGGAGCCGAAGT-TGAAATACCCTTGCAGAATA-TTCTGCAAATTATATTCTCCAAAATTATTCATATGATGCATTCTTAATAATC-----------------------------------------------------------------------------------------------------------------------------GTTCAGTTATATGGCAGCTATAGAATATAGTCGGCCGATCCTTATGAAATTTGATAT------------------------------------------------------------------------------G------T-CGGA------------------TTGATTGGCCAAAAATTAAACCCATAGAAAATCCCAAC--TTC-CT----------AACTTAACAA-------ACA-----CCAAA-----------------GTTACGG
droBia1 scf7180000301304:6831-7079 - AATAT--CAATTAAA---------------------A--TTT-AAAA---AAAAAACAAGAAAGGAA-GTTAACTTCGGC--------------AAGCCGAAGT-TTGTATACCCTTGCAGCTAT--AA-----AAA----ATAATCAATAATTTTATT-----------------------------------------------------------------------------AAATTGAATAATTTTATTAAAAATATAAAAATG-------------------------------------------------------------TATATTCCCAATATT-ATAAGA------------------------------------------------------------------TAATATGTCAAAAATTGAATTCGAAATTC-AGAACTAATTAAAAAATGTTAT-TTTC-------------------------------AAGCTC----ATA---AAAATGTTAAAAA-------ACA-----CGAAA-----------------GATATAT
droTak1 scf7180000414572:16517-16797 + GTTTTGTAAC----------TAAAAAGG--------A--CTA-AAAA---AAATTACAAGAAAGGAA-GCTAGCTTCGGC--------------CAGCCGAAGC-TTATATACCCTTGCAGATCA-TTCCTATTAA-----TTAA----------------------------CAAATCGCA---------------------------------------------------------------------------------AAAATGTTCAATTTTCTAATATTTCTC--ATTAACTTTCCGATCGTTCCTATGGCAGCTATATGATATAGTCGTCCGATTTTTTAAATAATTAA--------------------------------------------------------------------------------TTCGAAATTC-AGAAATATTTAAAAA---------------------TAACATCCTTA--AAAGTAGAAG--TTA-AT----------ATTTCAAAAA-------ACA-----CCAAAGCTAGA------------ATTTTT
droEug1 scf7180000409111:41118-41200 - ATAGC--TAG----------TAATAATA--------T--TTT-AACA---ACAAAATAATTAAAGAA-GCTAACTTCGGC--------------AAGCCAAAGT-TTATATACCCCTGCAGCTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3L:22752009-22752080 + TGAA--------------------A-----------ATGCTT-CGTA---TAAAGGCAAGAAGGGAA-GCTAACTTTGGC--------------AAGCCGATGC-TTATATACCCTTGCAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3l:22473055-22473132 + ACTGT--CGTACCAA----G----------------G--CAT-AAAT---TAAAAACAGGAAAGGAA-GCTGGTCACGAG--------------AATCCGACGC-ATGTATACCTTTACAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_41:12697-12774 + ACTGT--CGTACCAA----G----------------G--TAT-AAAT---TAAAAACAGGAAAGGAA-GCTGGTCACGAG--------------AATCCGACGC-ATGTATACCCTTGCAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:15130832-15131057 + TTA------------------------------------------AA---TAAAAACATGAAAGGAA-ACTAGTTGCGGC--------------AAGCCGAAGC-TTACATACCCTTGCAGTAATT--A-----CAT----AT----------------------ATGCTTAA--------------------------------------------------GAACTTA-------TTTTTAAT-----------------------------------------------------------------AAATTAAC----GAATGATACAGTTGTCCGATTTTGACCAAATTAAAACC-GAAATTCAATGTTGTAAA------------------------------------------------------------------A-TAAC------------------TGGCTTGTACCAAATTAAAACAATTATTAATCGA-ATT--ACTTC-------------T---------TC-----ATTA--AGATA----GT-----------CATTTTC
droEre2 scaffold_4644:304227-304297 + GTGT-------------------AA-----------A--TAG-CAAT---TTAAGCCGAGAAAGGAA-GATAACTGCGGC--------------CAGCCGAAGT-TTATGTACCTTTGCTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:9324292-9324379 + TTAT-GTCAG----------TGTTATTTTGTCAT-----------AA---TCATAACAAGAAAGGATTCCTAGCTT-GGG---------------GGCCGAAGCCTTAAATACCCTTGCAGATCCATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_35:401462-401549 - TTAT-GTCAG----------TGTTATTTTGTCAT-----------AA---TCATAACAAGAAAGGATTCCTAGCTT-GGG---------------GGCCGAAGCCTTAAATACCCTTGCAGATCCATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:6777585-6777849 - AATTT--CAATTAAA----T--------GGGGAA-----------A------AATACGAAAAAAAAACCCGAGGTC-CGGGATTAACTTAATTCGCTCCGAAGT-TTGTATACCCTTGCAAGTTTT--T-----TA------T----------------------------------------------------------TCGTTAATTTTCCCTTTTCTATG--AGGAGACAGACTTC-------------------------------------------------------AA------ATTTGTTTATGTGACAGCTGTATAATTTAGTTAACCGATTTTAATCAAACTTAGCACAGTCATTTAAA-------------------------------------------------------------------------------------------GCTTTTGTTAAACTAAGAA---GTG----------------TACATGTTT----ATGA------------CAATTGC-----G-----TCAAAGGTAAA-----------AGTTTGT
droVir3 scaffold_12855:7934484-7934712 + AGGT-------------------AA---------GCA--TCT-CAAA---AATAAACGAGGGAGAAGCGTTCTCTTCGGC--------------ACGCCGAACA-TTTAATACCCTTGCAGACCCA--A-----CAT----TTTCCTAAGTTTTCCATC-----------------------------------------------------------------------------CAACTTAAT--------------------------------------------------------------------TTTTGCGCTATATGATATAGTAGTCCGATGTTAATAGGATTTTTCAAATATTTTAGGA-------------------------------------------------------------------G------C-ATAG------------------TAAATCTAATAAATGACGAG--------------------TTC----GTTTCAGATATCTTAATAT-------TCG-----AGAAA-----------------GTTTTTC
droMoj3 scaffold_1960:17472-17580 + TCTTT--TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGACATACGACCCTAATGAAACTTGCAGA------------------------------------------------------------------------------G------C-GTAA------------------TCATATGACTAAAATATGTGTACATTCCAAAGCACAAC--TCT-CT----------AGTACCTGAA-------A-------TGCAA-----------------ATTGTGC
droGri2 scaffold_15116:1278350-1278418 + ATCA------------------------------------------------------------------------------------------------GATT-TCTTGTCCCTATGTAGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTATCAAATGT-AGC--TTTGC-------------T---------AC-----ATCAATAGCAA-----------------AATATAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACTGT--TATGTCAA----G--TAA---------AAA--TGT-CAAA---TAAAAACAAGAAAGGAAAGCTAACGG-GCG--------------GAGCCGAAGT-TGATATACCCTTGCAGTTCAG-TC------GC----AG----------------------TCCGCTA--------------------------------------------------GG--TGGCGCCACGCATCTTATA----TTATT-----------------------------------------------------AGATATATAGCGG--ATCGTATATAGTCGGCCGATCCTTATGAAATTTGGCAG------------------------------------------------------------------------------A------T-CAGA------------------TTGCTTTTCCCAAAATAGAATCTGTACCAAATCCCATC--TTT-CT----------AACTTAAAAA-------ACA-----CCAAA-----------------GTTATGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................TCCGCTA--------------------------------------------------GG--TGGCGCCACGCATC...................................................................................................................................................................................................................................................................................................................................................23200.65130130000
......................................................................................................................................................................................................................................................................................................................TATATAGCGG--ATCGTATATAGTCGGCC................................................................................................................................................................................................................................................27200.65130130000
................................................................................................................CCCTTGCAGTTCAG-TC------GC----AG----------------------TCCGCTA--------------------------------------------------G....................................................................................................................................................................................................................................................................................................................................................................28200.50101000000
..............................................................................CG--------------GAGCCGAAGT-TGATATACCCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.357700000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTACCAAATCCCATC--TTT-C.................................................................22200.357070000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATCTGTACCAAATCCCATC--TTT-..................................................................26200.306060000
...............................................................................................................................TC------GC----AG----------------------TCCGCTA--------------------------------------------------GG--TGGC.............................................................................................................................................................................................................................................................................................................................................................19200.204040000
....................................................................................................................TGCAGTTCAG-TC------GC----AG----------------------TCCGCTA--------------------------------------------------G....................................................................................................................................................................................................................................................................................................................................................................24200.102000002
.............................................................................................................ATACCCTTGCAGTTCAG-TC------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
.....................................................................................................................GCAGTTCAG-TC------GC----AG----------------------TCCGCTA--------------------------------------------------GG--TGG..............................................................................................................................................................................................................................................................................................................................................................27200.102200000
.....................................................................................................................................................................................................................................................................................................................................GTATATAGTCGGCCGATCCTT.........................................................................................................................................................................................................................................21200.102000020
...................................................................................................................TTGCAGTTCAG-TC------GC----AG----------------------TCCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000002
.............................................................................................................................................AG----------------------TCCGCTA--------------------------------------------------GG--TGGCGCCACG.......................................................................................................................................................................................................................................................................................................................................................21200.102000020
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCTGTACCAAATCCCAT.........................................................................21200.102200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATCTGTACCAAATCCCATC--......................................................................23200.051100000
...................................................................................................................................................................................................................................................TA----TTATT-----------------------------------------------------AGATATATAGCGG--ATC..............................................................................................................................................................................................................................................................23200.051010000
........................................................................................................................................................................................................................................................................................................................TATAGCGG--ATCGTATATAGTCGGCCG...............................................................................................................................................................................................................................................26200.051000001
....................................................................................................................TGCAGTTCAG-TC------GC----AG----------------------TCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
.......................................................................................................................................................................................................................................................................................................................................ATATAGTCGGCCGATCCTTATGAAAT..................................................................................................................................................................................................................................26200.051100000
.........................................................................................................................TTCAG-TC------GC----AG----------------------TCCGCTA--------------------------------------------------GG--TGGCGC...........................................................................................................................................................................................................................................................................................................................................................26200.051000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTACCAAATCCCATC--TTT-CT----------A.....................................................25200.051001000
....................................................................................................................TGCAGTTCAG-TC------GC----AG----------------------TCCGCTA--------------------------------------------------GG--TG...............................................................................................................................................................................................................................................................................................................................................................27200.051010000
..................................................................................................................CTTGCAGTTCAG-TC------GC----AG----------------------TCCGCTA--------------------------------------------------GG--.................................................................................................................................................................................................................................................................................................................................................................27200.051010000
.....................................................................................................................................................................................................................................................................................................................................GTATATAGTCGGCCGATCCTTATG......................................................................................................................................................................................................................................24200.051001000
..................................................................................................................CTTGCAGTTCAG-TC------GC----AG----------------------TCC...........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
...........................................................................G-GCG--------------GAGCCGAAGT-TGATATACCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.......................................................................................................T-TGATATACCCTTGCAGTTCAG-TC------GC----AG----------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
..............................................................................................................TACCCTTGCAGTTCAG-TC------GC----AG----------------------TCCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000001
droBip1
ACTGT--ATG-GTAT----G-GTAA---------AAA--T---TAAA---AAAAAACAAGAAAGTAAAGCTAACTTCGGG------------CGGAGCCGAAGT-TGATATACCCTTGCAGTTGA-AACCGCATAT-----ACAA----------------------------CTAAT-----------------------------------------------------------------------------------------------------------------------------GTCAACATATATCGCAGACATCGGATATAGTTGGCCGATCCTTATGAAATTTGGTAG------------------------------------------------------------------------------G------T-TGGA------------------TCAACTGACCAAAAATAGAATCTGTATTAAATTCCAGC--TTT-CT----------ATTTTTAAAA-------ACA-----CGAAA-----------------GTTGGGTSizeHit CountTotal NormTotal
No Reads
droKik1
ATTTT--TGTTTTAA----A-------TAATAAC-----------GATCGTAAAAACAAGAAAGGAA-GCTAACTTCGGC--------------ACGCCGAAGT-TTGTATACCCTTGCAGATTGC--A-----ATT----GG----------------------ATCATTAA--------------------------------------------------GAATCGAGCCATTCTTGTTAAA----TAATT-----------------------------------------------------A--------AA----AAA-----------------------AATATAAAAAAT-ATATTTAAAAGTTGTATATTTATACATAGCATGAATACATAACATTTTACCTATAGTTATTATGTTTACAG------T------T-TG-----------------------A------------------------CAGTCACAGT--TTC-TC-------------------------------------ATT-----------------GCTAGCTSizeHit CountTotal NormTotal
No Reads
droFic1
AATAT--TAGTCAAA----------AATACGGAA-----------AATTAATGGAACAAGAAAGGAA-GCTAGCTTCGGC--------------AAGCCGAAGC-TTATATACCCTTGCAGTCAT--TA-----AAT----ATAA----------------------------TATGTCGAAGCTATGACGATTCTTCTATT----------------------------------CATT----------------------------------------------------------TTCCATATTGTTCATATGACAGCTATATAATATAGTCGTCCGATTTTGATGAAATTTAA--------------------------------------------------------------------------------TTTTAAACTC-AGGACTCATTAGAAAACTCTAT-ATTCCAA-------------------AAATCATAAT--TGT-CTGATG-----------AAAAA--------CC-----ACGATGCTATAATTTTATTTCCGTTATTTSizeHit CountTotal NormTotal
No Reads
droEle1
TTAAA--AAA------------------------C-A--ACGCAATT---TAAAAAAAAGAAAGGAA-GCAAACTTCGGC--------------AAGCCGAAGT-TCATATACCCTTGCAGATGT--TC-----AA-----------AAGCATT-------------------------GAATCTATGATAATTC---------------------------------------------------------------------------------------------GCAGATCAATTATTTGATAGTTCTTATCACAGCTATATGATATTGTT-TCCGATTTTAATAAAATTAAAAAC-GTA-------------------------------------------------------------------------TTTCAAATTA-ATAATTAGTCAAAAA---------------------GAATTTCTAAA--A---------------------------------AAAATTACGAAAT------AAAAA-----------------GTTATATSizeHit CountTotal NormTotal
No Reads
droRho1
ACTGT--TATTTAAAAAACG-GAAA---------GAA--TTG-AAAT---AAAAAACAAGAAAGGAAAGCTAACTTCGGG------------CGGAGCCGAAGT-TGAAATACCCTTGCAGAATA-TTCTGCAAATTATATTCTCCAAAATTATTCATATGATGCATTCTTAATAATC-----------------------------------------------------------------------------------------------------------------------------GTTCAGTTATATGGCAGCTATAGAATATAGTCGGCCGATCCTTATGAAATTTGATAT------------------------------------------------------------------------------G------T-CGGA------------------TTGATTGGCCAAAAATTAAACCCATAGAAAATCCCAAC--TTC-CT----------AACTTAACAA-------ACA-----CCAAA-----------------GTTACGGSizeHit CountTotal NormTotal
No Reads
droBia1
AATAT--CAATTAAA---------------------A--TTT-AAAA---AAAAAACAAGAAAGGAA-GTTAACTTCGGC--------------AAGCCGAAGT-TTGTATACCCTTGCAGCTAT--AA-----AAA----ATAATCAATAATTTTATT-----------------------------------------------------------------------------AAATTGAATAATTTTATTAAAAATATAAAAATG-------------------------------------------------------------TATATTCCCAATATT-ATAAGA------------------------------------------------------------------TAATATGTCAAAAATTGAATTCGAAATTC-AGAACTAATTAAAAAATGTTAT-TTTC-------------------------------AAGCTC----ATA---AAAATGTTAAAAA-------ACA-----CGAAA-----------------GATATATSizeHit CountTotal NormTotal
No Reads
droTak1
GTTTTGTAAC----------TAAAAAGG--------A--CTA-AAAA---AAATTACAAGAAAGGAA-GCTAGCTTCGGC--------------CAGCCGAAGC-TTATATACCCTTGCAGATCA-TTCCTATTAA-----TTAA----------------------------CAAATCGCA---------------------------------------------------------------------------------AAAATGTTCAATTTTCTAATATTTCTC--ATTAACTTTCCGATCGTTCCTATGGCAGCTATATGATATAGTCGTCCGATTTTTTAAATAATTAA--------------------------------------------------------------------------------TTCGAAATTC-AGAAATATTTAAAAA---------------------TAACATCCTTA--AAAGTAGAAG--TTA-AT----------ATTTCAAAAA-------ACA-----CCAAAGCTAGA------------ATTTTTSizeHit CountTotal NormTotal
No Reads
droEug1
ATAGC--TAG----------TAATAATA--------T--TTT-AACA---ACAAAATAATTAAAGAA-GCTAACTTCGGC--------------AAGCCAAAGT-TTATATACCCCTGCAGCTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGAA--------------------A-----------ATGCTT-CGTA---TAAAGGCAAGAAGGGAA-GCTAACTTTGGC--------------AAGCCGATGC-TTATATACCCTTGCAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................GAAGGGAA-GCTAACTTTGGC--------------AAGCCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2719.0090000000000000000000000000000000000000000000000000000000000000000000000000000032400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TT-CGTA---TAAAGGCAAGAAGGGAA-GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000500000
..................................................TAAAGGCAAGAAGGGAA-GCTAACTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000300000
..................................................TAAAGGCAAGAAGGGAA-GCTAACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
........................................TT-CGTA---TAAAGGCAAGAAGGGAA-GCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.........................................T-CGTA---TAAAGGCAAGAAGGGAA-GCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
................................................................GAA-GCTAACTTTGGC--------------AAGCCGATGC-T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................T-CGTA---TAAAGGCAAGAAGGGAA-GCTAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TA---TAAAGGCAAGAAGGGAA-GCTAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TA---TAAAGGCAAGAAGGGAA-GCTAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................AGAAGGGAA-GCTAACTTTGGC--------------AAGCCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AACTTTGGC--------------AAGCCGATGC-TTATATACCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TGCTT-CGTA---TAAAGGCAAGAAGGGAA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................A---TAAAGGCAAGAAGGGAA-GCTAACTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................TTTGGC--------------AAGCCGATGC-TTATATACCCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CTT-CGTA---TAAAGGCAAGAAGGGAA-GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................TAAAGGCAAGAAGGGAA-GCTAACTTTGGC--------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................AAGAAGGGAA-GCTAACTTTGGC--------------AAGCCGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................A---TAAAGGCAAGAAGGGAA-GCTAACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................AAGGGAA-GCTAACTTTGGC--------------AAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................TAAAGGCAAGAAGGGAA-GCTAACTTTGGC--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................A-GCTAACTTTGGC--------------AAGCCGATGC-TTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TAACTTTGGC--------------AAGCCGATGC-TT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GCTAACTTTGGC--------------AAGCCGATGC-TTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AAGGCAAGAAGGGAA-GCTAACTTTGGC--------------AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TAACTTTGGC--------------AAGCCGATGC-TTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................AAGAAGGGAA-GCTAACTTTGGC--------------AAGCCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CGTA---TAAAGGCAAGAAGGGAA-GCTAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................TA---TAAAGGCAAGAAGGGAA-GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GCAAGAAGGGAA-GCTAACTTTGGC--------------AAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AAAGGCAAGAAGGGAA-GCTAACTTTGGC--------------AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CTTTGGC--------------AAGCCGATGC-TTATATACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TTTGGC--------------AAGCCGATGC-TTATATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AAAGGCAAGAAGGGAA-CG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
droSim2
ACTGT--CGTACCAA----G----------------G--CAT-AAAT---TAAAAACAGGAAAGGAA-GCTGGTCACGAG--------------AATCCGACGC-ATGTATACCTTTACAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
ACTGT--CGTACCAA----G----------------G--TAT-AAAT---TAAAAACAGGAAAGGAA-GCTGGTCACGAG--------------AATCCGACGC-ATGTATACCCTTGCAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTA------------------------------------------AA---TAAAAACATGAAAGGAA-ACTAGTTGCGGC--------------AAGCCGAAGC-TTACATACCCTTGCAGTAATT--A-----CAT----AT----------------------ATGCTTAA--------------------------------------------------GAACTTA-------TTTTTAAT-----------------------------------------------------------------AAATTAAC----GAATGATACAGTTGTCCGATTTTGACCAAATTAAAACC-GAAATTCAATGTTGTAAA------------------------------------------------------------------A-TAAC------------------TGGCTTGTACCAAATTAAAACAATTATTAATCGA-ATT--ACTTC-------------T---------TC-----ATTA--AGATA----GT-----------CATTTTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GTGT-------------------AA-----------A--TAG-CAAT---TTAAGCCGAGAAAGGAA-GATAACTGCGGC--------------CAGCCGAAGT-TTATGTACCTTTGCTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
TTAT-GTCAG----------TGTTATTTTGTCAT-----------AA---TCATAACAAGAAAGGATTCCTAGCTT-GGG---------------GGCCGAAGCCTTAAATACCCTTGCAGATCCATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTAT-GTCAG----------TGTTATTTTGTCAT-----------AA---TCATAACAAGAAAGGATTCCTAGCTT-GGG---------------GGCCGAAGCCTTAAATACCCTTGCAGATCCATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AATTT--CAATTAAA----T--------GGGGAA-----------A------AATACGAAAAAAAAACCCGAGGTC-CGGGATTAACTTAATTCGCTCCGAAGT-TTGTATACCCTTGCAAGTTTT--T-----TA------T----------------------------------------------------------TCGTTAATTTTCCCTTTTCTATG--AGGAGACAGACTTC-------------------------------------------------------AA------ATTTGTTTATGTGACAGCTGTATAATTTAGTTAACCGATTTTAATCAAACTTAGCACAGTCATTTAAA-------------------------------------------------------------------------------------------GCTTTTGTTAAACTAAGAA---GTG----------------TACATGTTT----ATGA------------CAATTGC-----G-----TCAAAGGTAAA-----------AGTTTGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................AAGT-TTGTATACCCTTGCAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
droVir3
AGGT-------------------AA---------GCA--TCT-CAAA---AATAAACGAGGGAGAAGCGTTCTCTTCGGC--------------ACGCCGAACA-TTTAATACCCTTGCAGACCCA--A-----CAT----TTTCCTAAGTTTTCCATC-----------------------------------------------------------------------------CAACTTAAT--------------------------------------------------------------------TTTTGCGCTATATGATATAGTAGTCCGATGTTAATAGGATTTTTCAAATATTTTAGGA-------------------------------------------------------------------G------C-ATAG------------------TAAATCTAATAAATGACGAG--------------------TTC----GTTTCAGATATCTTAATAT-------TCG-----AGAAA-----------------GTTTTTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................TATATGATATAGTAGTCCGATGTTAA........................................................................................................................................................................................................................................26140.071000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................ATAGTAGTCCGATGTTAA........................................................................................................................................................................................................................................18200.051000000000000000000000000000000001000000000000000000000000000000
droMoj3
TCTTT--TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGACATACGACCCTAATGAAACTTGCAGA------------------------------------------------------------------------------G------C-GTAA------------------TCATATGACTAAAATATGTGTACATTCCAAAGCACAAC--TCT-CT----------AGTACCTGAA-------A-------TGCAA-----------------ATTGTGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AGTACCTGAA-------A-------TGCAA-----------------ATTGTGC2411.001100000
......................................................................................................................................................................................................................................................................................................................................................CCTAATGAAACTTGCAGA------------------------------------------------------------------------------G------C-GTAA------------------T.............................................................................................................2530.331000001
..TTT--TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGACATACGACCCTAATGAAAC..................................................................................................................................................................................................................................2830.331100000
..TTT--TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGACATACGACCCTAATGAAACT.................................................................................................................................................................................................................................2930.331000010
TCTTT--TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGACATACGACCC...........................................................................................................................................................................................................................................2130.331100000
.CTTT--TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGACATACGACCCTAATGAATA..................................................................................................................................................................................................................................2930.331100000
droGri2
ATCA------------------------------------------------------------------------------------------------GATT-TCTTGTCCCTATGTAGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTATCAAATGT-AGC--TTTGC-------------T---------AC-----ATCAATAGCAA-----------------AATATAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:59 AM