ID:

dan_3300

 Coordinate:

scaffold_13417:1465898-1466054 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dana\GF20435-cds]; exon [dana_GLEANR_2841:5]; CDS [Dana\GF20435-cds]; exon [dana_GLEANR_2841:4]; intron [Dana\GF20435-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGCATCCCGAGTATCGTCCCAAGCGTCCTACTAATCAGTTTGTTCCAAGGTGAGTATTATTTAGCGCCTTTAATTGAGAGCAAAATCATTTCAAGTATTTGTTTTTCTATTTTCAAATGAAAAATTAAAAACCAACCAAAAAAACCAACCACGAATCTGCATCGTCCTGACAACGACAACGACAACAACAACAACAACAACAACAGGCTGTATGGCTTTAAAATACACAGCTTAGCTTATCAAATTCAGCTGCAGG
**************************************************.((((.((.((((.((..(((.....))).)).)))).)))))).......((((((...(((((....)))))...))))))..................((((.......)))).........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V055
head
 V106
head
 M044
female body
 V039
embryo
 V105
male body
....AGCCCGAGTATCGTCCCAAGC........................................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
....AGCCCGAGTATCGTCCCAAG......................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..........AGTATCGTCCCAAGCGTCCT................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0
........................................................................................................................................................................................................................ATTTAAAATACACAGCTTAG..................... 20 1 1 1.00 1 0 1 0 0 0 0
..GCATCCCGAGTATCGTCCC............................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
....ATCCCGAGTATCGTCCCAAGC........................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
....ATCCCGAGTATCGTCCCAAGCGTC..................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.TGCATCCCGAGTATCGTC.............................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................TTTAAAATACACAGCTTAGCTTATC............... 25 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................TATGGCTTTAGAATACACA........................... 19 1 1 1.00 1 0 1 0 0 0 0
................GTCCCAAGCGTCCTACTAATCAGT......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................................AGAACCAACCAAAAAAACC.............................................................................................................. 19 1 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................TACCAAAAAAACCAACCAC........................................................................................................ 19 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................................................AACATTGAAAACCAACCAAAATAA................................................................................................................ 24 3 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................AAAAACCCACCAAAACAACCA............................................................................................................. 21 2 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................AAAAAACAACCAAAAAAACC.............................................................................................................. 20 1 3 0.33 1 1 0 0 0 0 0
...........................................................................................................................AAGTAAAAACCCACCAAAAAAA................................................................................................................ 22 2 3 0.33 1 1 0 0 0 0 0
........................................................................................................................ACAAAATAAAAACCACCCAAAAAAAC............................................................................................................... 26 3 3 0.33 1 1 0 0 0 0 0
.................................AATCAGTTTGTTCCAAGAC............................................................................................................................................................................................................. 19 2 3 0.33 1 1 0 0 0 0 0
........................................................................................................................AGAAATAAAAAACCGACCAAAAAAA................................................................................................................ 25 3 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................AAAATTTAACACCCACCAAAAAAA................................................................................................................ 24 3 5 0.20 1 0 0 0 0 1 0
............................................................................................................................ATTAAAACCCAACCACAAAACCC.............................................................................................................. 23 3 5 0.20 1 1 0 0 0 0 0
................................................................................................TATTTGTTTTTCTATCTCCACA........................................................................................................................................... 22 3 6 0.17 1 0 0 0 0 1 0
................................................................................................................................AAAACGAACCAAAAAAACC.............................................................................................................. 19 1 6 0.17 1 1 0 0 0 0 0
................................................................................................................................AAAACCAACAAAAAAAACC.............................................................................................................. 19 1 20 0.15 3 3 0 0 0 0 0
................................................................................................................................AGAACCAACCCAAAAAACCA............................................................................................................. 20 2 9 0.11 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................ATTAGCTTATCAGATTCA........ 18 2 9 0.11 1 0 0 0 1 0 0
...........................................................................................................................................................................................AACAACAACAACAACAACAGG................................................. 21 0 10 0.10 1 0 0 0 0 0 1
...............................................................................................................................AAAAAGCAAACAAAAAAACCAAC........................................................................................................... 23 2 10 0.10 1 1 0 0 0 0 0
...............................................................................................................................AAAAAACAACCAAAAAAACCAC............................................................................................................ 22 2 10 0.10 1 1 0 0 0 0 0
................................................................................................................................AAAACCCACCACAAAAACCA............................................................................................................. 20 2 11 0.09 1 1 0 0 0 0 0
................................................................................................................................AAGACCAACCCAAAAAACC.............................................................................................................. 19 2 11 0.09 1 0 0 0 0 1 0
............................................................................................................................AGAAAAAACCAACCAAAAAAAC............................................................................................................... 22 2 11 0.09 1 1 0 0 0 0 0
.....................................................................................................................................CAAACAAAAAAACCCACCAC........................................................................................................ 20 2 11 0.09 1 1 0 0 0 0 0
.................................................................................................................................AAACCAGCCAAAAAAAAGAACC.......................................................................................................... 22 3 13 0.08 1 1 0 0 0 0 0
................................................................................................................................AAAAACAACGAAAACAACCAACC.......................................................................................................... 23 3 14 0.07 1 1 0 0 0 0 0
........................................................................................................................AAAAATTACAACCCAACCA...................................................................................................................... 19 2 14 0.07 1 1 0 0 0 0 0
.......................................................................................................................GTAAAATTAAAAAGCAACC....................................................................................................................... 19 2 15 0.07 1 1 0 0 0 0 0
...............................................................................................................................AAAAACCAAACAAAAAAACC.............................................................................................................. 20 1 15 0.07 1 1 0 0 0 0 0
............................................................................................................................................................................AACGACGACGACAACAACAA................................................................. 20 1 15 0.07 1 0 1 0 0 0 0
............................................................................................................................................................................AAAGACAACGACAACAACCAC................................................................ 21 2 16 0.06 1 1 0 0 0 0 0
...........................................................................................................................................CAAAAACCAACCACCAATC................................................................................................... 19 2 16 0.06 1 1 0 0 0 0 0
.....................................................................................................................................AAACCCAAAAAACCAACCAC........................................................................................................ 20 2 17 0.06 1 0 0 0 0 1 0
................................................................................................................................AAAACCACCCAAAAACACCA............................................................................................................. 20 2 18 0.06 1 1 0 0 0 0 0
...............................................................................................................................AGAAACCAACCAAAAAAA................................................................................................................ 18 1 18 0.06 1 1 0 0 0 0 0
...............................................................................................................................AGAAACGAACCAAAAAGACC.............................................................................................................. 20 3 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................AACAACGAAAAAAACCCACCA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
................................................................................................................................AAAAGCACCCAAAAAAACC.............................................................................................................. 19 2 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................GAAATGTTAAAAACCCACCA...................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................AACCAAACAAAACACCCAACCA......................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................AAAAAAACCGAGCACGAATA................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
............................................................................................................................AATAAAACTCAACCAAAAAAACC.............................................................................................................. 23 3 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................CAATCACGGATCTGCATCAT........................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0
...............................................................................................................................AAAAACCAACCAAAAAAAA............................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................AACAAAACAAAAAAACCCACCAC........................................................................................................ 23 3 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................AAAAACCAACCTAAAAAA................................................................................................................ 18 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................GACCACAACAACAACAAGAACAAC.................................................... 24 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CACGTAGGGCTCATAGCAGGGTTCGCAGGATGATTAGTCAAACAAGGTTCCACTCATAATAAATCGCGGAAATTAACTCTCGTTTTAGTAAAGTTCATAAACAAAAAGATAAAAGTTTACTTTTTAATTTTTGGTTGGTTTTTTTGGTTGGTGCTTAGACGTAGCAGGACTGTTGCTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTCCGACATACCGAAATTTTATGTGTCGAATCGAATAGTTTAAGTCGACGTCC
**************************************************.((((.((.((((.((..(((.....))).)).)))).)))))).......((((((...(((((....)))))...))))))..................((((.......)))).........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13417:1465848-1466104 + dan_3300 GTGCATCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGAGTATTATTT------AGCG------------------------------CCT---TTAATTGAGA--GCAAAATCATT-------------TCAAGTAT-----------------------------------------------------TTGT-T-----------------------------------------TTTCTATTT-----TCA--AA-TG-AAAAATTAAAAACCAACC--AAAA--AAA-------------------------------------------------CCAACCACGAATCTGCATCGTC---CTGACAA------------CGACAACGACAACAACAACAACAAC-------------------------AACA---AC------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGG
droBip1 scf7180000396558:1718-1926 - GTGCATCCCGAATATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCACGGTGAGTTTG-----GTCTC-----TATT-----------TA-CCTTAATAT--ATT---T----------C------------------------AA--ATATT-----------------------------------------AAAAGTATTTTATTT-C-----------------------------------------TTTTT----------CA--AA-AA-AAAAA-----------CCACCAAC-------------------------------------------CAACGACAACTCGAATTAT---------------------------------------------------C----------------------------------TGCA---AC------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGG
droKik1 scf7180000302544:518936-519158 + GTGCATCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTTTGTCTT-----GA--------AATTTTCACCA-----C-CTCTTATTTAC--TTTTACTT----------------------------------AT--A-TCTTC-------------------------------------------TTCTTGTGTAT-----------------------------------------TTTTTATGT-----ACG-----------------------------------------------------------------------------ACGAATATCTATT-------------------------CAA------------------------------------CGACACCGCACGCCAATCATCGATACGACA---AA------------AGGCTGTATGGCTTTAAAATACACAGCCTAGCT----TATCAAATTCAGCTGCAGG
droFic1 scf7180000453277:154345-154563 + GTGCATCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTCAGTTTT-----GAAAT-----CAAT-----------TT-ACCCGATTTAC--TAATACTC----------------------------------AA--A-TACAC-------------------------------------------GTTCTATATCT-----------------------------------------TTTCTATGT-----TTGCG--TACAT---------------CC--GGCAC-------------------------------AAAAACAAATTCGACGGCGTCTTCAA-------------------------------------------------------C----------------------------------AACA---AC------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGG
droEle1 scf7180000491023:476135-476342 - GTGCATCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGACTTTTT----GAATA-----CATT-----------TT-CCTCGATATAC--TTATACTC----------------------------------AA--C-AT--C-------------------------------------------ATTTTATAC-------------------------------------------CTTCTATGT-----TTGCG--AATAT---------------CC--AACAC-------------------------------GAATC---------CTGCAACTTTAA-------------------------------------------------------C----------------------------------TACAA--AC------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGG
droRho1 scf7180000777255:23122-23339 + GTGCATCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGACTTTT-----GACTT-----AACT-----------TA-CGCCGATGTAC--TTATGCTC----------------------------------AA--C-TTCAC-------------------------------------------ATTCTGTAT-------------------------------------------CTTCTATGT-----TTGCA--AATAT---------------CC--AACAC-------------------------------GAATCCTGCTTCGACGGCAACTCGAA-------------------------------------------------------C----------------------------------TACAA--AC------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGG
droBia1 scf7180000298389:1490346-1490562 + GTGCATCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGAGATTCG-----GCTG----AGATTTGCTGCAAGT-TA-CCCCGATTTAA--TGATACAT----------------------------------GT--A-TTTAC-------------------------------------------ATTCT--TT-T-----------------------------------------ATTCTATGT-----TCG-G--CATAT---------------AC--GAAA-------------------------------------------CAACGACAACTTAAA-------------------------------------------------------C----------------------------------CACATGTGT------------AGGCTGTACGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGG
droTak1 scf7180000414375:195360-195577 - GTGCACCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGAGATTTA-----AATG----AGATTTGCAGGAGATGGA-CACCGATTTAA--TTACACTG----------------------------------AA--A-TCCAC-------------------------------------------ATTCTGTAT-------------------------------------------ATTCTATGT-----TTGCG--TATAT---------------CC--GAAT-------------------------------------------CGACGACAACTTGAA-------------------------------------------------------C----------------------------------TACAA--AC------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGG
droEug1 scf7180000409181:27471-27672 + GTGCACCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTAAGCTATTTTATGA--------AATT---------------CATATCAT--A-------------------------------------------------T-----------------------------------TTACACTGATA-ATTTTGTAT-T-----------------------------------------ATTCTATGT-----TCGCG--TGTAT---------------CT--ACAA-------------------------------------------TGATGACAACTTGAT-------------------------------------------------------G------AA---------------------------TTAA--CT------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGG
dm3 chrX:11688992-11689187 + GTGCATCCCGAATATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTAAGATTTATACCC--------AT--------------------TACTGT--AT--ATG----------C------------------------AC--ATTGT-----------------------------------------TAA--TATGCTCTTT-T-----------------------------------------GTTTTATGT---------------GC---------------CC--GATA-------------------------------------------CGACGTCAACTTGAT-------------------------------------------------------CATC--------------------------------ACATACAT------------AGGCTATATGGATTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGG
droSim2 x:11069051-11069249 + GTGCATCCCGAATATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTAAGATTTATTCCC--------AA--------------T-ACAGTACTAT--AG--ATG----------C------------------------AC--ATTGT-----------------------------------------TGATACATTCTCTTC-C-----------------------------------------GTTTTATGT---------------GC---------------CC--GATA-------------------------------------------CGACGACAACTTGAT-------------------------------------------------------C----------------------------------TACAC--AT------------AGGCTGTATGGATTCAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGG
droSec2 scaffold_36:362751-362949 + GTGCATCCCGAATATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTAAGATTTATTCCC--------AA--------------T-ACAGTACTAT--AG--ATG----------C------------------------AC--ATTGT-----------------------------------------TGATACATTCTCTTT-C-----------------------------------------GTTTTATGT---------------GC---------------CC--GATA-------------------------------------------CGACGACAACTTGAT-------------------------------------------------------C----------------------------------TACAC--AT------------AGGCTGTATGGATTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGG
droYak3 X:15009729-15009916 - GTGCATCCCGAATATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGAGTTTTATGCCG--------CT--------------------AACTGT--AG--ACA----------A------------------------TCAAATTTT-----------------------------------------TG--ACATTCTCTAT-------------------------------------------ATTTTATGT---------------AT---------------CC--CACA-------------------------------------------CGACGA--------A-------------------------------------------------------C------AAC-------------------------AACAA--AT------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGG
droEre2 scaffold_4690:3511900-3512103 - der_362 GTGCATCCCGAATATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGAGATTTATTTCG--------CT--------------------TATTGT--AG--ATA----------C------------------------ACAAATTGT-----------------------------------------TT--ACACTCTCTAT-------------------------------------------ATTTTATGTATT-TT------TGTAT---------------CC--AACA-------------------------------------------CGACGACAACTTAAA-------------------------------------------------------C------AAC-------------------------AACAA--AT------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGG
dp5 Unknown_singleton_1849:4591-4699 + C--CATCCAGGAGACCCATC-CCCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGACAACAACAACAA------------CGACGACAAC-------------------------AACA------------------ACTGTTCCGGCGGCCAAGTACACCACTACGTCCCGTCGGCCCATTCCGCTGCATG
droPer2 scaffold_0:634163-634271 + C--CATCCAGGAGACCCATC-CCCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGACAACAACAACAA------------CGACGACAAC-------------------------AACA------------------ACTGTTCCGGCGGCCAAGTACACCACCACGTCCCGTCGGCCCATTCCGCTGCATG
droWil2 scf2_1100000004902:6989990-6990167 - TTTAGCCCCTTT---CGAACAAAAGAG--CAACAAAAATTATTGTTATAAATTATATTTTTCAATGGCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------CTACGATTAAGCAACAACC--AAAACGAAACTAAAAA-----CAGGACAAAATCTAAAAGGCAAAATCCAAA-------------------------------------AGCAAATGCAATAACAA---C---------AGAAACAAC-------------------------ATCA---GC---AGCAGCAACAA----------------------------------------------------GC
droVir3 scaffold_12963:11911342-11911491 - GCTTT--T-------------------------------------------------------------------------------------------------AA-CCGTAAG-TAA--TTGCATAT----------------------------------AT--A-TTCAATTTATCGTATTCGAGAGAGTTCTTATCAAATTCAGAC-------------------------------------------------------------------------------------------------------CAAC-------------------------------------------AAAAGTGAGCCCCAAACACCTGCCCACAGCACATAGCTGATAA------------CGACAACAACTACAAC----------------------------------AACA-----------------------------------------------------------ACAACAACAACA--
droMoj3 scaffold_6500:25213923-25214114 - CAGTTCGCTAG---CTCATT----------------------------------------------------TTTATTT-----CAGCG------------------------------CCC---CCGGCTGGGATGACAAAATCGTAGCATGCTACATGTGA--GCAGC-----------------------------------------TTGTGCATTCCCTTT--------------------------------------------------------TCGT--AA-TA-AAATG--------------------------TCAAGTATTTGCTGGCAATAACAACAGAGGCAGAGGCAGCAGCACCATC----------------------------------------AACAACAAC------------AACAAC-------------------------AACAA---CAATTGCAACAGCAAACTGT-------------------------------------------------
droGri2 scaffold_15252:12742805-12742974 + GTTTGCGCTTC------------------------------------------------------ATTAAATATTATTG------AAAT------------------------------GTT---GCAATTAATA--GC------------------------------------------------------------------------------GTAA-TTGT-TATTTTATGTCACGACAACAACATCAACATCCAATGCACAACA--------AC-CCAAC--AG-TT-GAACT--------------------------TTAAGCACTTGGCA----------------------C----------------------------------------AACAACAACAACAGCAA---C---------AGTAACAAC-------------------------AATG---AC--------------------------------------------------------AACAACAAC-AG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GTGCATCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGAGTATTATTT------AGCG------------------------------CCT---TTAATTGAGA--GCAAAATCATT-------------TCAAGTAT-----------------------------------------------------TTGT-T-----------------------------------------TTTCTATTT-----TCA--AA-TG-AAAAATTAAAAACCAACC--AAAA--AAA-------------------------------------------------CCAACCACGAATCTGCATCGTC---CTGACAA------------CGACAACGACAACAACAACAACAAC-------------------------AACA---AC------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........AGTATCGTCC-CAAGCGTCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..GCATCCCGAGTATCGTCC-C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
....ATCCCGAGTATCGTCC-CAAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....ATCCCGAGTATCGTCC-CAAGCGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.TGCATCCCGAGTATCGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAATACACAGCTTAGCT----TATC...............2511.001010000
................GTCC-CAAGCGTCCTACTAATCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..................................AATCAGTTTGT---------------TCCAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAAC-------------------------AACA---AC------------AGG.....................................................21100.101000010
.............................................................................................................................................................................................................................................................................................................AAAAACCAACC--AAAA--AAA-------------------------------------------------A..........................................................................................................................................................................19200.051010000
droBip1
GTGCATCCCGAATATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCACGGTGAGTTTG-----GTCTC-----TATT-----------TA-CCTTAATAT--ATT---T----------C------------------------AA--ATATT-----------------------------------------AAAAGTATTTTATTT-C-----------------------------------------TTTTT----------CA--AA-AA-AAAAA-----------CCACCAAC-------------------------------------------CAACGACAACTCGAATTAT---------------------------------------------------C----------------------------------TGCA---AC------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotal
No Reads
droKik1
GTGCATCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTTTGTCTT-----GA--------AATTTTCACCA-----C-CTCTTATTTAC--TTTTACTT----------------------------------AT--A-TCTTC-------------------------------------------TTCTTGTGTAT-----------------------------------------TTTTTATGT-----ACG-----------------------------------------------------------------------------ACGAATATCTATT-------------------------CAA------------------------------------CGACACCGCACGCCAATCATCGATACGACA---AA------------AGGCTGTATGGCTTTAAAATACACAGCCTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotal
No Reads
droFic1
GTGCATCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTCAGTTTT-----GAAAT-----CAAT-----------TT-ACCCGATTTAC--TAATACTC----------------------------------AA--A-TACAC-------------------------------------------GTTCTATATCT-----------------------------------------TTTCTATGT-----TTGCG--TACAT---------------CC--GGCAC-------------------------------AAAAACAAATTCGACGGCGTCTTCAA-------------------------------------------------------C----------------------------------AACA---AC------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotal
No Reads
droEle1
GTGCATCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGACTTTTT----GAATA-----CATT-----------TT-CCTCGATATAC--TTATACTC----------------------------------AA--C-AT--C-------------------------------------------ATTTTATAC-------------------------------------------CTTCTATGT-----TTGCG--AATAT---------------CC--AACAC-------------------------------GAATC---------CTGCAACTTTAA-------------------------------------------------------C----------------------------------TACAA--AC------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotal
No Reads
droRho1
GTGCATCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGACTTTT-----GACTT-----AACT-----------TA-CGCCGATGTAC--TTATGCTC----------------------------------AA--C-TTCAC-------------------------------------------ATTCTGTAT-------------------------------------------CTTCTATGT-----TTGCA--AATAT---------------CC--AACAC-------------------------------GAATCCTGCTTCGACGGCAACTCGAA-------------------------------------------------------C----------------------------------TACAA--AC------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotal
No Reads
droBia1
GTGCATCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGAGATTCG-----GCTG----AGATTTGCTGCAAGT-TA-CCCCGATTTAA--TGATACAT----------------------------------GT--A-TTTAC-------------------------------------------ATTCT--TT-T-----------------------------------------ATTCTATGT-----TCG-G--CATAT---------------AC--GAAA-------------------------------------------CAACGACAACTTAAA-------------------------------------------------------C----------------------------------CACATGTGT------------AGGCTGTACGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotal
No Reads
droTak1
GTGCACCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGAGATTTA-----AATG----AGATTTGCAGGAGATGGA-CACCGATTTAA--TTACACTG----------------------------------AA--A-TCCAC-------------------------------------------ATTCTGTAT-------------------------------------------ATTCTATGT-----TTGCG--TATAT---------------CC--GAAT-------------------------------------------CGACGACAACTTGAA-------------------------------------------------------C----------------------------------TACAA--AC------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotal
No Reads
droEug1
GTGCACCCCGAGTATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTAAGCTATTTTATGA--------AATT---------------CATATCAT--A-------------------------------------------------T-----------------------------------TTACACTGATA-ATTTTGTAT-T-----------------------------------------ATTCTATGT-----TCGCG--TGTAT---------------CT--ACAA-------------------------------------------TGATGACAACTTGAT-------------------------------------------------------G------AA---------------------------TTAA--CT------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotal
No Reads
dm3
GTGCATCCCGAATATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTAAGATTTATACCC--------AT--------------------TACTGT--AT--ATG----------C------------------------AC--ATTGT-----------------------------------------TAA--TATGCTCTTT-T-----------------------------------------GTTTTATGT---------------GC---------------CC--GATA-------------------------------------------CGACGTCAACTTGAT-------------------------------------------------------CATC--------------------------------ACATACAT------------AGGCTATATGGATTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................GTCC-CAAGCGTCCTACTAATCAGTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TATCGTCC-CAAGCGTCCTACTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCT----TATCAAATTCAGCTGCAGG2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AAGCGTCCTACTAATCAGTTTGT---------------TCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATCGTCC-CAAGCGTCCTACTAATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TATCGTCC-CAAGCGTCCTACTAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................GTCC-CAAGCGTCCTACTAATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CGTCC-CAAGCGTCCTACTAATCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000
..............................TACTAATCAGTTTGT---------------TCCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........CGAATATCGTCC-CAAGCGTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
........................GCGTCCTACTAATCAGTTTGT---------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GTCC-CAAGCGTCCTACTAATCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATACACAGCTTAGCT----TAT................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCCCGAATATCGTCC-CAAGCGTCCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TCGTCC-CAAGCGTCCTACTAATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATCGTCC-CAAGCGTCCTACTAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GCATCCCGAATATCGTCC-CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CC-CAAGCGTCCTACTAATCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATTTAAAATACACAGCTTAGCT----TA.................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ATATCGTCC-CAAGCGTCCTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CGAATATCGTCC-CAAGCGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATCCCGAATATCGTCC-CAAGCGTCCTACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT----TATCAAATTCAGCTGC...1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATCGTCC-CAAGCGTCCTACTAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTATATGGATTTAAAATACACA...............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCC-CAAGCGTCCTACTAATCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....................CAAGCGTCCTACTAATCAGTTTGT---------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................................................................................................................................................................................................................................................................................................................ACGTCAACTTGAT-------------------------------------------------------CATC--------------------------------ACATACAT------------AG......................................................2711.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GTCCTACTAATCAGTTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATGGATTTAAAATACACAGCTT...........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACACAGCTTAGCT----TA.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGATTTAAAATACACAGCTTAG.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CGTCC-CAAGCGTCCTACTAATCAGTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAGCTTAGCT----TATCAAATTCAGC......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGATTTAAAATACACAGCTTAGCT----T..................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GTCC-CAAGCGTCCTACTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CC-CAAGCGTCCTACTAATCAGTTTGT---------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGCTTAGCT----TATCAAATTCAGC......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CTAATCAGTTTGT---------------TCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
...............................ACTAATCAGTTTGT---------------TCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGATTTAAAATACACAGCTTAGCT----...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TACCC--------AT--------------------TACTGT--AT--ATG----------C------------------------AC--ATTGT-----------------------------------------TAA--.......................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CGAATATCGTCC-CAAGCGTCCTACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CGTCAACTTGAT-------------------------------------------------------CATC--------------------------------ACATACAT------------AG......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCC-CAAGCGTCCTACTAATCAGTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TCGTCC-CAAGCGTCCTACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TCGTCC-CAAGCGTCCTACTAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGGATTTAAAATACACAGCTTA..........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCTTAGCT----TATCAAATTCAGCTGC...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AGCGTCCTACTAATCAGTTTGT---------------TCCAAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CCGAATATCGTCC-CAAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCCCGAATATCGTCC-CAAGCGTCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GCATCCCGAATATCGTCC-C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTTAGCT----TATCAAATTC.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GT---------------TCCAAGGTAAGATTTATACCC--------AT--------------------T...............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GTCCTACTAATCAGTTTGT---------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCCCGAATATCGTCC-CAAGCGTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TCGTCC-CAAGCGTCCTACTAATCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAGCTTAGCT----TATCAAATTC.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCT----TATCAAATTCAGCTG....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCC-CAAGCGTCCTACTAATCAGTTTGT---------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TTGAT-------------------------------------------------------CATC--------------------------------ACATACAT------------AG......................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACACAGCTTAGCT----TATC...............2011.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCC-CAAGCGTCCTACTAATCAGTTTGT---------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
..................CC-CAAGCGTCCTACTAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................C-CAAGCGTCCTACTAATCAGTTTGT---------------TC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................C-CAAGCGTCCTACTAATCAGTTTGT---------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CCGAATATCGTCC-CAAGCGTCCTACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AATATCGTCC-CAAGCGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............CGTCC-CAAGCGTCCTACTAATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAGCTTAGCT----TATCAAATTCAG.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTTAAAATACACAGCTTAGCT----TA.................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CC-CAAGCGTCCTACTAATCAGTTTGT---------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGGATTTAAAATACACAGCTTAGC........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................CAAGCGTCCTACTAATCAGTTTGT---------------TC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CCGAATATCGTCC-CAAGCGTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATACACAGCTTAGCT----...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.TGCATCCCGAATATCGTCC-CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GAATATCGTCC-CAAGCGTCCTACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCCCGAATATCGTCC-CAAGCGTCCTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
...................................ATCAGTTTGT---------------TCCAAGGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droSim2
GTGCATCCCGAATATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTAAGATTTATTCCC--------AA--------------T-ACAGTACTAT--AG--ATG----------C------------------------AC--ATTGT-----------------------------------------TGATACATTCTCTTC-C-----------------------------------------GTTTTATGT---------------GC---------------CC--GATA-------------------------------------------CGACGACAACTTGAT-------------------------------------------------------C----------------------------------TACAC--AT------------AGGCTGTATGGATTCAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTTAGCT----TATCAAATTCAGCTGC...2613.00300300000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGATTCAAAATACACAGCTTAGC........................2611.00100010000000000000
...........................TCCTACTAATCAGTTTGT---------------TCCAAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--AT------------AGGCTGTATGGATTCAAA......................................2311.00100100000000000000
..................................AATCAGTTTGT---------------TCCAAGGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50101000000000000000
droSec2
GTGCATCCCGAATATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTAAGATTTATTCCC--------AA--------------T-ACAGTACTAT--AG--ATG----------C------------------------AC--ATTGT-----------------------------------------TGATACATTCTCTTT-C-----------------------------------------GTTTTATGT---------------GC---------------CC--GATA-------------------------------------------CGACGACAACTTGAT-------------------------------------------------------C----------------------------------TACAC--AT------------AGGCTGTATGGATTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCT----TATCAAATTCAGCT.....2011.0010010
...............................ACTAATCAGTTTGT---------------TCCAAGGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
droYak3
GTGCATCCCGAATATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGAGTTTTATGCCG--------CT--------------------AACTGT--AG--ACA----------A------------------------TCAAATTTT-----------------------------------------TG--ACATTCTCTAT-------------------------------------------ATTTTATGT---------------AT---------------CC--CACA-------------------------------------------CGACGA--------A-------------------------------------------------------C------AAC-------------------------AACAA--AT------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....ATCCCGAATATCGTCC-CAAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00210100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGCT----TATCAAATTCAG.......1911.00100010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGCTTAGCT----TATCAAATTCA........2411.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACAGCTTAGCT----TATCAAATTCAGC......2811.00100000010000
....ATCCCGAATATCGTCC-CAAGCGTCCTACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACAGCTTAGCT----TATCAA.............2111.00101000000000
droEre2
GTGCATCCCGAATATCGTCC-CAAGCGTCCTACTAATCAGTTTGT---------------TCCAAGGTGAGATTTATTTCG--------CT--------------------TATTGT--AG--ATA----------C------------------------ACAAATTGT-----------------------------------------TT--ACACTCTCTAT-------------------------------------------ATTTTATGTATT-TT------TGTAT---------------CC--AACA-------------------------------------------CGACGACAACTTAAA-------------------------------------------------------C------AAC-------------------------AACAA--AT------------AGGCTGTATGGCTTTAAAATACACAGCTTAGCT----TATCAAATTCAGCTGCAGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGCTTAGCT----TATCAA.............1911.0010001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTATGGCTTTAAAATACACAG..............................2511.0011000000
.............ATCGTCC-CAAGCGTCCTACTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
........CGAATATCGTCC-CAAGCGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
dp5
C--CATCCAGGAGACCCATC-CCCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGACAACAACAACAA------------CGACGACAAC-------------------------AACA------------------ACTGTTCCGGCGGCCAAGTACACCACTACGTCCCGTCGGCCCATTCCGCTGCATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
C--CATCCAGGAGACCCATC-CCCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGACAACAACAACAA------------CGACGACAAC-------------------------AACA------------------ACTGTTCCGGCGGCCAAGTACACCACCACGTCCCGTCGGCCCATTCCGCTGCATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTTAGCCCCTTT---CGAACAAAAGAG--CAACAAAAATTATTGTTATAAATTATATTTTTCAATGGCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------CTACGATTAAGCAACAACC--AAAACGAAACTAAAAA-----CAGGACAAAATCTAAAAGGCAAAATCCAAA-------------------------------------AGCAAATGCAATAACAA---C---------AGAAACAAC-------------------------ATCA---GC---AGCAGCAACAA----------------------------------------------------GCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA---GC---AGCAGCAACAA----------------------------------------------------G.1840.25100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-------------------------ATCA---GC---AGCAGCAACA.......................................................18200.05100010
droVir3
GCTTT--T-------------------------------------------------------------------------------------------------AA-CCGTAAG-TAA--TTGCATAT----------------------------------AT--A-TTCAATTTATCGTATTCGAGAGAGTTCTTATCAAATTCAGAC-------------------------------------------------------------------------------------------------------CAAC-------------------------------------------AAAAGTGAGCCCCAAACACCTGCCCACAGCACATAGCTGATAA------------CGACAACAACTACAAC----------------------------------AACA-----------------------------------------------------------ACAACAACAACA--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................GTAAG-TAA--TTGCATAT----------------------------------AT--A-TTCAATTTA.............................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACAAC----------------------------------AACA-----------------------------------------------------------ACAACAAC......21200.153001200000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACAAC----------------------------------AACA-----------------------------------------------------------ACAACAACA.....21200.051000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACAAC----------------------------------AACA-----------------------------------------------------------ACAACAACAA....23200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CAGTTCGCTAG---CTCATT----------------------------------------------------TTTATTT-----CAGCG------------------------------CCC---CCGGCTGGGATGACAAAATCGTAGCATGCTACATGTGA--GCAGC-----------------------------------------TTGTGCATTCCCTTT--------------------------------------------------------TCGT--AA-TA-AAATG--------------------------TCAAGTATTTGCTGGCAATAACAACAGAGGCAGAGGCAGCAGCACCATC----------------------------------------AACAACAAC------------AACAAC-------------------------AACAA---CAATTGCAACAGCAAACTGT-------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTTTGCGCTTC------------------------------------------------------ATTAAATATTATTG------AAAT------------------------------GTT---GCAATTAATA--GC------------------------------------------------------------------------------GTAA-TTGT-TATTTTATGTCACGACAACAACATCAACATCCAATGCACAACA--------AC-CCAAC--AG-TT-GAACT--------------------------TTAAGCACTTGGCA----------------------C----------------------------------------AACAACAACAACAGCAA---C---------AGTAACAAC-------------------------AATG---AC--------------------------------------------------------AACAACAAC-AGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:51 AM