ID:

dan_330

 Coordinate:

scaffold_10376:3206-3356 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.1 -40.0 -40.0

Flybase annnotation

exon [dana_GLEANR_4966:1]; CDS [Dana\GF21549-cds]; intron [Dana\GF21549-in]

No Repeatable elements found

mature
  1. scaffold_7969:4603-4627 +
  2. dan_330  scaffold_10376:3264-3288 +
  3. dan_1086  scaffold_13016:1064-1088 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCAAGGCCAGGGGCAGCAAGGTCAAGGACAAGGTTTGGAAGGTCCTGGAGTAGGTGGTGCTGGTAAAAACGATAGCGGCAGAGGCGGTGGCGGCGGCTCCAACCAAGGTGGTGGCGGAGGAGGTGGTGGTGGAAACCAACAACATATTTAACCAACAGCGTGAAAACAGAAACCGTGGCCAAAGTTCAGGTGGCCCTGGTGGCCCCAATGACACTATGGAAGAACGGGACGGAGGTGGCAGTGGTTCCCG
**************************************************........(((((.((.......)).)))))..(((..((((.((((((((.((((...))))...))))....((.((((....)))).))..................((....)).....)))).))))..)))((((....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 V105
male body		 M044
female body
 V055
head
 M058
embryo
 V039
embryo
................................................GAGTGGGTGGTGCTGGTGGAAA..................................................................................................................................................................................... 22 3 9 118.56 1067 1034 24 5 2 1 1
................................................GAGTGGGTGGTGCTGGTGGAAAC.................................................................................................................................................................................... 23 3 3 45.67 137 131 2 2 0 2 0
...............................................GGAGTGGGTGGTGCTGGTGGAAA..................................................................................................................................................................................... 23 3 3 3.00 9 6 1 1 0 1 0
................................................GAGTGGGTGGTGCTGGTGTAAA..................................................................................................................................................................................... 22 3 4 2.00 8 8 0 0 0 0 0
.................................................AGTGGGTGGTGCTGGTGGAAAC.................................................................................................................................................................................... 22 3 7 2.00 14 14 0 0 0 0 0
............................................................................................................GTGGTGGCGGAGGAGGTGGTGGTGG...................................................................................................................... 25 0 3 1.67 5 3 2 0 0 0 0
............................................................................................................GTGGTGGCGGAGGAGGTGGTGGTGGA..................................................................................................................... 26 0 3 1.33 4 1 3 0 0 0 0
................................................GAGTGGGTGGTGCTGGTTGAAA..................................................................................................................................................................................... 22 3 4 1.25 5 5 0 0 0 0 0
............................................................................CGGCAGAGGCGGTGCCGGCCG.......................................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0
................................................GAGTGGGTGGTGCTGGTTGAA...................................................................................................................................................................................... 21 3 14 0.93 13 13 0 0 0 0 0
............................................................................................................GTGGTGGCGGAGGAGGTGGTGGTGGAT.................................................................................................................... 27 1 3 0.67 2 0 2 0 0 0 0
.........................................................................................................AAGGTGGTGGCGGAGGAGGTGGTGGT........................................................................................................................ 26 0 3 0.67 2 1 1 0 0 0 0
...........................................................................................................GGTGGTGGCGGAGGAGGTGGTGGT........................................................................................................................ 24 0 3 0.67 2 0 2 0 0 0 0
................................................GAGTTGGTGGTGCTGGTGGAAA..................................................................................................................................................................................... 22 3 19 0.58 11 11 0 0 0 0 0
................................................GAGTGGGTGGTGCTGGTGTAA...................................................................................................................................................................................... 21 3 15 0.53 8 8 0 0 0 0 0
................................................GAGTGGGTGGTGCTGGTGAA....................................................................................................................................................................................... 20 2 10 0.40 4 4 0 0 0 0 0
..............................................................................................................GGTGGCGGAGGAGGTGGCGGTGGA..................................................................................................................... 24 1 5 0.40 2 2 0 0 0 0 0
................................................GAGTGGGTGGTGCTGGTAGAA...................................................................................................................................................................................... 21 2 5 0.40 2 2 0 0 0 0 0
................................................GAGTGGGTGGTGCTGGTGAAAA..................................................................................................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0
................................................GAGTGGGTGGTGCTGGTCGAAA..................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
............................................................................................................GTGGTGGCGGAGGAGATGGTGGTGGA..................................................................................................................... 26 1 3 0.33 1 0 1 0 0 0 0
............................................................................................................GTGGTGGCGGAGGAGGTGG............................................................................................................................ 19 0 3 0.33 1 0 0 1 0 0 0
................................................GAGTGGGTGGTGCTGGTAAA....................................................................................................................................................................................... 20 1 3 0.33 1 1 0 0 0 0 0
........................................................................................................CAAGGTGGTGGCGGAGGAGGTGGT........................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0
................................................GAGTGGGTGGTGCTGGTAGAAA..................................................................................................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0
............................................................................................................GTGGTGGCGGAGGAGGTGGTGG......................................................................................................................... 22 0 3 0.33 1 0 1 0 0 0 0
..............................................................................................................GGTGGCGGAGGAGGTGGTGGTGGA..................................................................................................................... 24 0 3 0.33 1 0 1 0 0 0 0
............................................................................................................GTGGTGGCGGAGGAGGTGGTGGTGGAA.................................................................................................................... 27 0 3 0.33 1 0 1 0 0 0 0
............................................................................................................GTGGTGGCGGAGGAGGTGGTGGTGGAAA................................................................................................................... 28 0 3 0.33 1 0 1 0 0 0 0
................................................GAGTAGGTGGTGCTGGTGGAAA..................................................................................................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0
.........................................................................................................AAGGTGGTGGCGGAGGAGGTGGTGG......................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0
............................................................................................................GTGGTGGCGGAGCAGGTGGTGGTGGA..................................................................................................................... 26 1 3 0.33 1 0 1 0 0 0 0
................................................GAGTGGGTGGTGCTGGGAAA....................................................................................................................................................................................... 20 2 7 0.29 2 2 0 0 0 0 0
.................................................AGTGGGTGGTGCTGGTTGAAA..................................................................................................................................................................................... 21 3 11 0.27 3 3 0 0 0 0 0
............................................................................................................GTGGTGGCGGAGGAGAGGGTGGTGG...................................................................................................................... 25 2 4 0.25 1 1 0 0 0 0 0
.................................................AGTGGGTGGTGCTGGTGAAAA..................................................................................................................................................................................... 21 2 4 0.25 1 1 0 0 0 0 0
..........GGGGCAGCAAGGTCAAGGACAAGGT........................................................................................................................................................................................................................ 25 0 4 0.25 1 0 0 1 0 0 0
............................................................................................................GTGGTGGCGGAGGAGGTGGGGGTGG...................................................................................................................... 25 1 4 0.25 1 0 1 0 0 0 0
................................................GAGTGGGTGGTGCTGGTGAAA...................................................................................................................................................................................... 21 2 4 0.25 1 1 0 0 0 0 0
.....GGCCAGGGGCAGCAAGGTCAAGGA.............................................................................................................................................................................................................................. 24 0 4 0.25 1 0 0 1 0 0 0
................................................GAGTAGGTGGTGCTGGTGGAA...................................................................................................................................................................................... 21 2 4 0.25 1 1 0 0 0 0 0
................................................GAGTAGGTGGTGCTGGTGGAAAT.................................................................................................................................................................................... 23 3 4 0.25 1 1 0 0 0 0 0
............................................................................................................GTGGTGGCGGAGGGGGTGGTGG......................................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0
.................................................AGTGGGTGGTGCTGGTTGAAAC.................................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0
............................................................................................................GTGGTGGCGGAGGAGGGGGTGGTGG...................................................................................................................... 25 1 4 0.25 1 1 0 0 0 0 0
...............................................GGAGTGGGTGGTGCTGGTGGAA...................................................................................................................................................................................... 22 3 17 0.24 4 4 0 0 0 0 0
............................................................................................................GTGGTGGCGGACGAGGTG............................................................................................................................. 18 1 5 0.20 1 0 0 1 0 0 0
.........................................................................................................AAGGTGAGGGCGGAGGAGGTG............................................................................................................................. 21 2 5 0.20 1 1 0 0 0 0 0
..........................................................................................................AGGTGGAGGCGGAGGAGGTGGGGGT........................................................................................................................ 25 2 5 0.20 1 0 0 0 1 0 0
................................................GAGTTGGTGGTGCTGGTGGAAAC.................................................................................................................................................................................... 23 3 5 0.20 1 1 0 0 0 0 0
.................................................AGTAGGTGGTGCTGGTGGAA...................................................................................................................................................................................... 20 2 6 0.17 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................ACGGAGGTGGCATTGGTTCC.. 20 1 6 0.17 1 0 1 0 0 0 0
....................................................................................................................GGAGGAGGTGGTGGTGGA..................................................................................................................... 18 0 6 0.17 1 0 0 1 0 0 0
.................................................AGTGGGTGGTGCTGGTGCAAAC.................................................................................................................................................................................... 22 3 8 0.13 1 0 0 1 0 0 0
..............................................................................................................GGTGGCGGAGGTGGTGGTGGTGGA..................................................................................................................... 24 1 8 0.13 1 1 0 0 0 0 0
..............................................................................................................GGTGGCGGAGGAGGTGGTGGTGGTT.................................................................................................................... 25 2 8 0.13 1 1 0 0 0 0 0
..............................................TGGAGCAGGTGGTGCAGGGAAA....................................................................................................................................................................................... 22 3 9 0.11 1 0 0 1 0 0 0
.................................................AGTGGGTGGTGCTGGTGAA....................................................................................................................................................................................... 19 2 18 0.11 2 2 0 0 0 0 0
..............................................................................................................GGTGGCGGAGGAGGAGGTGGTGGA..................................................................................................................... 24 1 10 0.10 1 1 0 0 0 0 0
................................................GAGTGGGTGGTGCTGGTGCAAA..................................................................................................................................................................................... 22 3 10 0.10 1 0 1 0 0 0 0
..............................................................................................................GGTGGAGGAGGAGGTGGTGGTGGA..................................................................................................................... 24 1 11 0.09 1 1 0 0 0 0 0
...............................................................................................................GTGGAGGAGGAGGTGGTGGTGGA..................................................................................................................... 23 1 11 0.09 1 1 0 0 0 0 0
................................................GAGTGGGTGGTGCTGGTCGAA...................................................................................................................................................................................... 21 3 13 0.08 1 1 0 0 0 0 0
............................................................................CGGCAGGGGCGATGGCGGC............................................................................................................................................................ 19 2 14 0.07 1 0 0 0 1 0 0
................................................................................................................................................................................................................................ACGGTACGGAGGTGGCAGTGGT..... 22 1 14 0.07 1 0 0 1 0 0 0
................................................GAGTAGGTGGTGCTGGTGGAAC..................................................................................................................................................................................... 22 3 15 0.07 1 1 0 0 0 0 0
............................................................................................................GTGGTGGCGGAGGAGGTGGAGA......................................................................................................................... 22 2 15 0.07 1 0 0 1 0 0 0
...............................................................................................................................................................................................................................ACCGGCACGGAGTTGGCAGT........ 20 3 15 0.07 1 0 0 0 0 0 1
................................................................................................................TAGCGGAGGAGGTGGTGGTGGC..................................................................................................................... 22 2 16 0.06 1 0 0 0 1 0 0
........................................................................................................................................................................................................................ATGGAAGACCGGGACAGA................. 18 2 16 0.06 1 0 0 0 1 0 0
................................................GAGTGGGTGGTGCTGGGAA........................................................................................................................................................................................ 19 2 17 0.06 1 1 0 0 0 0 0
.............................................................................................................................................................................................GGTGGCCCTGTTGACCCC............................................ 18 2 17 0.06 1 0 0 0 0 1 0
................................................GAGTGGGTGGTGCTGGCGAAA...................................................................................................................................................................................... 21 3 17 0.06 1 1 0 0 0 0 0
.............................................................................................................TGGTGGCGGACGAGGTGA............................................................................................................................ 18 2 18 0.06 1 0 0 1 0 0 0
..........................................................................................................................................................................................................................GGAAGAACGGGACGACGG............... 18 2 18 0.06 1 0 0 1 0 0 0
...........................................................................GCGGCAGAGGGGGGGGCGG............................................................................................................................................................. 19 2 20 0.05 1 0 0 1 0 0 0
.......................................AAGGTCCGGGAGTAAGTGA................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0
....................GGTCAGGGACAATGTATGG.................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0
................................................GAGTGGGTGGTGCTGGTGAAC...................................................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
....................................................................................................................GGAGGAGGGGGTGGTGGAAAT.................................................................................................................. 21 2 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

CGGTTCCGGTCCCCGTCGTTCCAGTTCCTGTTCCAAACCTTCCAGGACCTCATCCACCACGACCATTTTTGCTATCGCCGTCTCCGCCACCGCCGCCGAGGTTGGTTCCACCACCGCCTCCTCCACCACCACCTTTGGTTGTTGTATAAATTGGTTGTCGCACTTTTGTCTTTGGCACCGGTTTCAAGTCCACCGGGACCACCGGGGTTACTGTGATACCTTCTTGCCCTGCCTCCACCGTCACCAAGGGC
**************************************************........(((((.((.......)).)))))..(((..((((.((((((((.((((...))))...))))....((.((((....)))).))..................((....)).....)))).))))..)))((((....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V106
head
 M058
embryo
 V055
head
 V039
embryo
 V105
male body
...........................................................................................................................................................................TTGGCCCGGGTTTCAAGT.............................................................. 18 2 9 17.00 153 138 11 3 0 1 0
..........................................................................................................................................................................GTTGGCCCGGGTTTCAAGT.............................................................. 19 3 20 0.60 12 11 0 0 0 0 1
................................CCACACCTTCCAGGACAT......................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0
..................................................................................................AGGTTGGTTCCATCACGGCG..................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0
...........................................................................................................................................................................TTGGCCCGGGTTTCAAG............................................................... 17 2 18 0.17 3 0 0 0 3 0 0
...........................................................................................................................................................................CTGGCCCCGGTTTCAAGT.............................................................. 18 2 9 0.11 1 0 0 0 1 0 0
................................................................................................................................................TATAAATTGGCTGTCGGAGT....................................................................................... 20 3 9 0.11 1 0 0 0 1 0 0
...........................................................................................................................................................................TTGGCCCGGGTTTCAAGTCTA........................................................... 21 3 9 0.11 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................GGATATCTGCTTGCCCTG.................... 18 3 20 0.10 2 0 0 0 1 0 1
..........................................................................................................................................................................GTTGGCCCCGGTTTCAAG............................................................... 18 2 12 0.08 1 1 0 0 0 0 0
.............................................................................................................................CCACCCCCTTTTGTTGTTATA......................................................................................................... 21 3 14 0.07 1 0 0 1 0 0 0
...........................................................................................................................................................................TTGGCCCTGGTTTCAAGT.............................................................. 18 2 15 0.07 1 0 1 0 0 0 0
.............................................................................................................................................................................................CCACCAGGACGACCGTGGTTA......................................... 21 3 17 0.06 1 0 0 1 0 0 0
...............................................CCTCACCCACCACGACCACCTT...................................................................................................................................................................................... 22 3 17 0.06 1 0 0 1 0 0 0
...........................................................................................................CCACCACCCCCTCCTCCAC............................................................................................................................. 19 1 18 0.06 1 0 0 1 0 0 0
............................................................................................................................................................................TGGCCCCGGTTTCAAGTTGA........................................................... 20 3 19 0.05 1 1 0 0 0 0 0
..........................................................................................................................CCACCACCACCTTTGGAAGG............................................................................................................. 20 3 19 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_10376:3156-3406 + dan_330 GC-CAAGGCCAG------------GGGCAG---------------------------CAAGGTCAAGGACAA------G------GTTTGGAAGGTCCTGGAGTA---GGTGGTGCTG------------------------------------------------GTA--------------------------------------AAAACGATAGCGGCAGAGGCGGTGGCGGCGGCTCCAACCAAGGTGGTG------------------------------GCG------GAGGAGGTGGTGGT------------------------------GGAAACCAACAACATATTT-------------------------------------------------------------------------------AACCAACAGCGTGAAAACAGAAACCGT---GGC------------------CAAAGTTCAG---GTGGCCCTGGTGGCCC---CAATGACACT---ATGGAAGAACGG---GACGGAGGTGGCAGTGGTTCCCG
droBip1 scf7180000395125:7515-7770 - GT-CAAGGTCAG------------GGGCAG---------------------------CAAGGTCAAGTCCAA------G------GTTTCCGAGGCCGTGGAGGA---GGCGGTGCTG------------------------------------------------GTA--------------------------------------AT---------------------------------AACGTTAGCGGGGGAGGCGGCGGTGGTGTTGGCTCCAATCAAGGTGGCGGCGGA---GTT---GGT------------------------------GGAAACCAGCTACATCATCAACAGCAG-----------------------------------------------------------------------CAGCAGCAGCGGGAAAACAGAAATCGT---GGA------------------CAACGTTCAG---GTGGCCCTGGCGGACC---TAATAACACCA---TGTGCGGGCGG---GATGGAGGTGGCGGTGGTTCCCG
droKik1 scf7180000302385:46956-47111 + AG-GA-------------------------------------------------------------------------------------------------GGA---GGCGGT------------------------------------------------------A--------------------------------------CGAACAATAACGGTGGGGGTGGTGGCAACGGCAACAACGGAGGCGGCG---------------------------------------GAGGAGGC---GGT------------------------------GATCATCAC---------CAACAGCAG-----------------------------------------------------------------------CAGCAGCAGCAAGGC---------GGC---------------------------GGACTGG---GAGGCCTCGG------------CAATAATGGAAGGGG------------CGGAGGACCCGGTGG------
droFic1 scf7180000453495:522727-523000 + AT-CAACGCCAA------------GGGCAGGATCAGGGCCAGAACAAG------------------------------GATCACGGAAA------TCAAGGA---GGTCAG---------GGAAATCAGGGCGGGCAAGGGAATCAAACTGGC---------CAAGGAA--------------------------------------ATGGACAGGGCTTCCGCGGTCGCG------------------------------------------------------GTG------GA---CCG---GGT------------------------------GGACCCCAGAACCAAC------AACAA--------------------------------------------------CAGCAGCAGCAACAACAACACAACCAGCAGGGGAATAGTAGAAACCGC---GGC------------------CAGCGACCCA---GTGGTATTGGCCCTAA---TAATAATTCCAATATGGGTGG---------CGGCGGAGGCGGAGGTGCACG
droEle1 scf7180000491242:14830-15109 + TG-CAAGGCCA------------AGAACAGGACCAGGGCCCGGGACAG------------------GGACAGGGACAGGGTCAT------------------------------------------------------GGAAATCAAGGAGGT---------CAAGGAA--------------------------------------ATAACCAAGGCTTCAGAGGTCGTGGCGCTGGCCACAACCAAAGTGGCGGTGGCGGTGGCGGCGGCGGCG---------CTA------GT---GCT---GGA------------------------------GGACCCCAGCATCAACAGCAACAACAA-----------------------------------------------------------------------CATCAGCAGCGCGACAACAGAAACCGC---GGT------------------CCCCGCGCGG---GAGGTCCAGGAGGCAT---GAACAGCTCCAACATTGGTGG---------CGGCGGAGGCGGTGGGCCGCG
droRho1 scf7180000779395:23542-23791 + AT-CAAGACCA------------AGGACAGGGT------------CAG------------------------------GGTCATGGAAA------TCAAGGA---GG---------------------------------------------T---------CCGGGAA--------------------------------------ATAATCAAGGATTCAGGGGTCGTGGCGTTGGCTACAACCAAGGTGGAAATGTTGGCG---------------------GTG------GT---GGC---GGA------------------------------GGACTCCAGCACCAAC------ACCAG--------------------------------------------------CAGCAGCAACAA---------TATCAGCAGCGCGACAACAGAAACCGG---GGT------------------CCACGCTCGG---GAGGTCCAGGAGGTAT---GAACAGCTCCAACATGGGTGG---------CGGCGGAGGCGGTGGTCCGCG
droBia1 scf7180000302126:750838-751063 - AT-GGAGGACAG------------GGGATG---------------------------C------------------------AAGGAAA------TCAAGGA---GGTCAG---------------------------GGAAATCAAGGCGGA---------CAGGGAA--------------------------------------ATGGCCAAGGCTTCAGAGGTCGCGTCGCTGGCAACAACCAAGGCGGAGGTG---------------------------GTG------GC---GGC---GGA------------------------------GGACCCCAG-----------------------------------------------------------------------------------------AACCAGCAACGGGACAACAGGAACCGT---GGT------------------CCACGCCCTG---GTGGTCCTGGCGGCAT---GAATAACTCCAACATGGGC------------GGCGGAGGCGGCGGTCCCCG
droTak1 scf7180000413933:22129-22390 - AC-CAAAACCA------------AAACCAAAATCAGGTGCAAGGTCAA------------------GGACA------------AGGACA------ACAAGGA---GGCCTA---------GGAAATCAA---------GGAAATCATGGAGGC---------CAAGGAA--------------------------------------ATGGGCCAGGCTTTAGAGGACGCAACGTTGGTAACAACCAAAGTGCTA------------------------------GCG------GT---GGC---GGA------------------------------GGACCCCTG-----------------------------------------------------------------------------------------AACCAGCAGCGGGACAACAGGAACCGG---GGT------------------CAACGACCTG---GCGGTCCTGGGGGCAT---GAACAGCTCCAACATGGGCGGCAGC---GGCGGCGGAGGCGGGGGTCCGCG
droEug1 scf7180000409008:1360801-1361068 - GT-CAAAACCA------------AAATCAGATT------------CAC------------------------------GGTCAAGGAAA------TCAAGGA---GGACAA---------GGAAACCAGGGAGGACATGGCAATCAAGGAGGACAGGGAAATCAAGGAA--------------------------------------ATGGGCATGGTTTCCGAGGACGCAACATTGGTAACAACCAAAGTGGAGGTGGTGGTG---------------------GCG------GT---CCT---GGT------------------------------GGACCCCAG-----------------------------------------------------------------------------------------AATCAGCAGCGTGACAACAGAAACCGA---GGT------------------CAACGCTCTAGCGGCGGTCCAGGTGGTAT---GAACAACTCCAATATGGGTGG---------C------GGCGGTGGTCAACG
droSim2 2l:259640-259763 - TA-GA-------------------------------------------------------------------------------------------------GGC---GGTGG--------------------------------------------------------------------------------------------------------CGGAGGAGGCGGTGGCGGCGGC------------GGAGGAG---------GCGGTG------------GCG------GAGGAGGT---GGTGGTTGGGGCGGCC--------------------------------------------------------------------------------------------------------------------------------GGAGAGGGAACCGC---GGC------------------AGAGATTCTA---ATAGGCGTGGTGGTCG---TAACAAC--------------------------------------------
droSec2 scaffold_17:75037-75340 + GA-CAAAACCA------------AAATCAAAATC------AAGTCCAT------------------------------GGCCAAGGAAA------TCAAGGA---GGACCA---------GGAAATCAAGGAGGAGCAGGCAATCAAGGAGGCCAAGGAAATCAAG--------------------GAGGAGCCGGAAATCAGGGAAATGGTCAGGGATTCAGAGGTCGCAATGCTGGTAACCATCAAGGTGGCG------------------------------GTT------TC---TCC---GGA------------------------------GGTCCGCAG-----------------------------------------------------------------------------------------AACCAGCAGCGTGACAACCGAAACCGTAGTGGT------------------CCACGCCCTGGCGGAGGTGCAGGTGGCACGATGAACAGCACCAATATGGGTGGTGGTGGTGGCGGTGGAGGCGGTGGTCCGCG
droYak3 X:10378296-10378623 + AT-CAACGGCAAGGGCAAAACCAAAATC------------AAGTCCAT------------------------------GGTCAAGGAAA------TCAAGGA---GGACCTGGCAATCAAGGAAATCAAGGAGGAGCAGGCAATCAAGGAGGCCAAGGAAATCAAGG--AGGCCAAGGAAATCAAGGAGGACCAGGAAATCAGGGAAATGGTCAAGGATTTAGAGGTCGCAACGTTGGTAACAATCAAGGTGGCG------------------------------GTT------TC---TCC---GGA------------------------------GGTCCGCAG-----------------------------------------------------------------------------------------AACCAGCAGCGTGACAACAGAAACCGTGGTGGT------------------CCACGGCCTAGCGGAGGTCCTGGTGGTATGATGAACAACACCAATATGGGTGG---------TGGAGGTGGTGGTGGTCCGCG
droEre2 scaffold_4690:10839546-10839807 - AT-CAACGGCAGGGGCAAAACCAAAATC------------AAGTCCAT------------------------------GGTCAAGGAAA------TCAAGGA---GGGCCT---------------------------GGCAATCAAGGAGGT---------CAAGGAA--------------------------------------ATGGTCAAGGATTTAGAGGTCGCAATGCTGGTAACAATCAGGGTGGCG------------------------------GTT------TC---CCC---GGA------------------------------GGTCCACAG-----------------------------------------------------------------------------------------AACCAGCAGCGTGACAACAGAAACCGAGGTGGT------------------CCACGCCCTGGTGGAGGCCCAGGTGGTATGATGAACAGCACCAATATGGGTGGTGGT---GGCAATGGAGGTGGTGGTCCGCG
droWil2 scf2_1100000004909:9137087-9137331 - CA---AGGACA------------ACAACAG---------------CAA------------------------------GGACAAGGATT------CCGTGGT---GGTCGTGGTGGTG------------------------------------------------GCA--------------------------------------ATAGTCAAGGAGGAGGTGGTGGTGGCGGTAACCATAACCAAGGAGGAGGTGGTGGTG---------------------GCG------GC---G------------------GCCAAGGAGGAGGAGGTGGCGGACATCAA-----------------------------------------------------------------------------------------CATCAGCAACAACGTGACCGAAACCGTGGACCT------------------CGTGGACTTG---GTGGTCATGGGGGTGG---ACAAAAT---AAT---GGAGGTGGC---GGTGGAGGTGGTGGTGGTGGTGG
droGri2 scaffold_15203:6990787-6991057 + GCTCAAGCCCAA------------GCTCAGGCTCAAGCTCAGGTCCATGCGCACTCTCAAGCTCAAAACCAA------G------CATTTAGAGTTCGCGGAGGC---GGTGGTGGTG------------------------------------------------G-----------------------------------------------------------------------------TGGAAGTGGCGGCGGCGGTGGTGGTGGCGGCG---------GAG------GC---G------------------GACAAGGCGGT---------GGACGCGAT------------------AGAAATCGCGGATCCCGTGGTGGTGGAGGCGGCGGCGGACCTAACTCTGGCGGCGGTAACAA--------------------------CACACAGCGC---GGCGATGATTTCTTTATAGCCCAACGTC------------TTCGCAGCAT---TAG---------------------------------------TGG-CCCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GC-CAAGGCCAG------------GGGCAG---------------------------CAAGGTCAAGGACAA------G------GTTTGGAAGGTCCTGGAGTA---GGTGGTGCTG------------------------------------------------GTA--------------------------------------AAAACGATAGCGGCAGAGGCGGTGGCGGCGGCTCCAACCAAGGTGGTG------------------------------GCG------GAGGAGGTGGTGGT------------------------------GGAAACCAACAACATATTT-------------------------------------------------------------------------------AACCAACAGCGTGAAAACAGAAACCGT---GGC------------------CAAAGTTCAG---GTGGCCCTGGTGGCCC---CAATGACACT---ATGGAAGAACGG---GACGGAGGTGGCAGTGGTTCCCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................GTGGTG------------------------------GCG------GAGGAGGTGGTGGT------------------------------GG......................................................................................................................................................................................................................................2531.675000023
.........................................................................................................................................................................................................................................................GTGGTG------------------------------GCG------GAGGAGGTGGTGGT------------------------------GGA.....................................................................................................................................................................................................................................2631.334000031
.........................................................................................................................................................................................................................................................GTGGTG------------------------------GCG------GAGGAGGTGGTGGT------------------------------GGAT....................................................................................................................................................................................................................................2730.672000020
......................................................................................................................................................................................................................................................AAGGTGGTG------------------------------GCG------GAGGAGGTGGTGGT------------------------------........................................................................................................................................................................................................................................2630.672000011
........................................................................................................................................................................................................................................................GGTGGTG------------------------------GCG------GAGGAGGTGGTGGT------------------------------........................................................................................................................................................................................................................................2430.672000020
.........................................................................................................................................................................................................................................................GTGGTG------------------------------GCG------GAGGAGGTGG..........................................................................................................................................................................................................................................................................1930.331100000
.....................................................................................................................................................................................................................................................CAAGGTGGTG------------------------------GCG------GAGGAGGTGGT.........................................................................................................................................................................................................................................................................2430.331000001
.........................................................................................................................................................................................................................................................GTGGTG------------------------------GCG------GAGGAGGTGGTGG.......................................................................................................................................................................................................................................................................2230.331000010
...........................................................................................................................................................................................................................................................GGTG------------------------------GCG------GAGGAGGTGGTGGT------------------------------GGA.....................................................................................................................................................................................................................................2430.331000010
.........................................................................................................................................................................................................................................................GTGGTG------------------------------GCG------GAGGAGGTGGTGGT------------------------------GGAA....................................................................................................................................................................................................................................2730.331000010
.........................................................................................................................................................................................................................................................GTGGTG------------------------------GCG------GAGGAGGTGGTGGT------------------------------GGAAA...................................................................................................................................................................................................................................2830.331000010
......................................................................................................................................................................................................................................................AAGGTGGTG------------------------------GCG------GAGGAGGTGGTGG.......................................................................................................................................................................................................................................................................2530.331000010
...........G------------GGGCAG---------------------------CAAGGTCAAGGACAA------G------GT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.251100000
......GGCCAG------------GGGCAG---------------------------CAAGGTCAAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.251100000
...............................................................................................................................................................................................................................................................................................G------GAGGAGGTGGTGGT------------------------------GGA.....................................................................................................................................................................................................................................1860.171100000
...........................................................................................................................................................................................................................................................GGTG------------------------------GCG------GAGGAGGTGGTGGT------------------------------GGTT....................................................................................................................................................................................................................................2580.131000001
droBip1
GT-CAAGGTCAG------------GGGCAG---------------------------CAAGGTCAAGTCCAA------G------GTTTCCGAGGCCGTGGAGGA---GGCGGTGCTG------------------------------------------------GTA--------------------------------------AT---------------------------------AACGTTAGCGGGGGAGGCGGCGGTGGTGTTGGCTCCAATCAAGGTGGCGGCGGA---GTT---GGT------------------------------GGAAACCAGCTACATCATCAACAGCAG-----------------------------------------------------------------------CAGCAGCAGCGGGAAAACAGAAATCGT---GGA------------------CAACGTTCAG---GTGGCCCTGGCGGACC---TAATAACACCA---TGTGCGGGCGG---GATGGAGGTGGCGGTGGTTCCCGSizeHit CountTotal NormTotal
No Reads
droKik1
AG-GA-------------------------------------------------------------------------------------------------GGA---GGCGGT------------------------------------------------------A--------------------------------------CGAACAATAACGGTGGGGGTGGTGGCAACGGCAACAACGGAGGCGGCG---------------------------------------GAGGAGGC---GGT------------------------------GATCATCAC---------CAACAGCAG-----------------------------------------------------------------------CAGCAGCAGCAAGGC---------GGC---------------------------GGACTGG---GAGGCCTCGG------------CAATAATGGAAGGGG------------CGGAGGACCCGGTGG------SizeHit CountTotal NormTotal
No Reads
droFic1
AT-CAACGCCAA------------GGGCAGGATCAGGGCCAGAACAAG------------------------------GATCACGGAAA------TCAAGGA---GGTCAG---------GGAAATCAGGGCGGGCAAGGGAATCAAACTGGC---------CAAGGAA--------------------------------------ATGGACAGGGCTTCCGCGGTCGCG------------------------------------------------------GTG------GA---CCG---GGT------------------------------GGACCCCAGAACCAAC------AACAA--------------------------------------------------CAGCAGCAGCAACAACAACACAACCAGCAGGGGAATAGTAGAAACCGC---GGC------------------CAGCGACCCA---GTGGTATTGGCCCTAA---TAATAATTCCAATATGGGTGG---------CGGCGGAGGCGGAGGTGCACGSizeHit CountTotal NormTotal
No Reads
droEle1
TG-CAAGGCCA------------AGAACAGGACCAGGGCCCGGGACAG------------------GGACAGGGACAGGGTCAT------------------------------------------------------GGAAATCAAGGAGGT---------CAAGGAA--------------------------------------ATAACCAAGGCTTCAGAGGTCGTGGCGCTGGCCACAACCAAAGTGGCGGTGGCGGTGGCGGCGGCGGCG---------CTA------GT---GCT---GGA------------------------------GGACCCCAGCATCAACAGCAACAACAA-----------------------------------------------------------------------CATCAGCAGCGCGACAACAGAAACCGC---GGT------------------CCCCGCGCGG---GAGGTCCAGGAGGCAT---GAACAGCTCCAACATTGGTGG---------CGGCGGAGGCGGTGGGCCGCGSizeHit CountTotal NormTotal
No Reads
droRho1
AT-CAAGACCA------------AGGACAGGGT------------CAG------------------------------GGTCATGGAAA------TCAAGGA---GG---------------------------------------------T---------CCGGGAA--------------------------------------ATAATCAAGGATTCAGGGGTCGTGGCGTTGGCTACAACCAAGGTGGAAATGTTGGCG---------------------GTG------GT---GGC---GGA------------------------------GGACTCCAGCACCAAC------ACCAG--------------------------------------------------CAGCAGCAACAA---------TATCAGCAGCGCGACAACAGAAACCGG---GGT------------------CCACGCTCGG---GAGGTCCAGGAGGTAT---GAACAGCTCCAACATGGGTGG---------CGGCGGAGGCGGTGGTCCGCGSizeHit CountTotal NormTotal
No Reads
droBia1
AT-GGAGGACAG------------GGGATG---------------------------C------------------------AAGGAAA------TCAAGGA---GGTCAG---------------------------GGAAATCAAGGCGGA---------CAGGGAA--------------------------------------ATGGCCAAGGCTTCAGAGGTCGCGTCGCTGGCAACAACCAAGGCGGAGGTG---------------------------GTG------GC---GGC---GGA------------------------------GGACCCCAG-----------------------------------------------------------------------------------------AACCAGCAACGGGACAACAGGAACCGT---GGT------------------CCACGCCCTG---GTGGTCCTGGCGGCAT---GAATAACTCCAACATGGGC------------GGCGGAGGCGGCGGTCCCCGSizeHit CountTotal NormTotal
No Reads
droTak1
AC-CAAAACCA------------AAACCAAAATCAGGTGCAAGGTCAA------------------GGACA------------AGGACA------ACAAGGA---GGCCTA---------GGAAATCAA---------GGAAATCATGGAGGC---------CAAGGAA--------------------------------------ATGGGCCAGGCTTTAGAGGACGCAACGTTGGTAACAACCAAAGTGCTA------------------------------GCG------GT---GGC---GGA------------------------------GGACCCCTG-----------------------------------------------------------------------------------------AACCAGCAGCGGGACAACAGGAACCGG---GGT------------------CAACGACCTG---GCGGTCCTGGGGGCAT---GAACAGCTCCAACATGGGCGGCAGC---GGCGGCGGAGGCGGGGGTCCGCGSizeHit CountTotal NormTotal
No Reads
droEug1
GT-CAAAACCA------------AAATCAGATT------------CAC------------------------------GGTCAAGGAAA------TCAAGGA---GGACAA---------GGAAACCAGGGAGGACATGGCAATCAAGGAGGACAGGGAAATCAAGGAA--------------------------------------ATGGGCATGGTTTCCGAGGACGCAACATTGGTAACAACCAAAGTGGAGGTGGTGGTG---------------------GCG------GT---CCT---GGT------------------------------GGACCCCAG-----------------------------------------------------------------------------------------AATCAGCAGCGTGACAACAGAAACCGA---GGT------------------CAACGCTCTAGCGGCGGTCCAGGTGGTAT---GAACAACTCCAATATGGGTGG---------C------GGCGGTGGTCAACGSizeHit CountTotal NormTotal
No Reads
droSim2
TA-GA-------------------------------------------------------------------------------------------------GGC---GGTGG--------------------------------------------------------------------------------------------------------CGGAGGAGGCGGTGGCGGCGGC------------GGAGGAG---------GCGGTG------------GCG------GAGGAGGT---GGTGGTTGGGGCGGCC--------------------------------------------------------------------------------------------------------------------------------GGAGAGGGAACCGC---GGC------------------AGAGATTCTA---ATAGGCGTGGTGGTCG---TAACAAC--------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................GC---GGTGG--------------------------------------------------------------------------------------------------------CGGAGGAGGCGGTGGCGGT..............................................................................................................................................................................................................................................................................................................................................2612.00200000000000002000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCGC---GGC------------------AGAGA..............................................................................1511.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ATAGGCGTGGTGGTCG---TAAC...............................................2111.00100000010000000000
............................................................................................................................................................................................................................AGGAGGCGGTGGCGGCGGC------------...............................................................................................................................................................................................................................................................................................................................1930.33100000000000100000
.........................................................................................................................................................................................................................CGGAGGAGGCGGTGGCGGCG.............................................................................................................................................................................................................................................................................................................................................2030.33100000000000001000
.............................................................................................................................................................................................................................GGAGGCGGTGGCGGCGGC------------G..............................................................................................................................................................................................................................................................................................................................1930.33100010000000000000
................................................................................................................................................................................................................................GGCGGTGGCGGCGGC------------...............................................................................................................................................................................................................................................................................................................................15200.30600000000600000000
......................................................................................................................................................................................................................................GGCGGCGGC------------GGAGGAG---------G..............................................................................................................................................................................................................................................................................................................17200.05100000000000010000
droSec2
GA-CAAAACCA------------AAATCAAAATC------AAGTCCAT------------------------------GGCCAAGGAAA------TCAAGGA---GGACCA---------GGAAATCAAGGAGGAGCAGGCAATCAAGGAGGCCAAGGAAATCAAG--------------------GAGGAGCCGGAAATCAGGGAAATGGTCAGGGATTCAGAGGTCGCAATGCTGGTAACCATCAAGGTGGCG------------------------------GTT------TC---TCC---GGA------------------------------GGTCCGCAG-----------------------------------------------------------------------------------------AACCAGCAGCGTGACAACCGAAACCGTAGTGGT------------------CCACGCCCTGGCGGAGGTGCAGGTGGCACGATGAACAGCACCAATATGGGTGGTGGTGGTGGCGGTGGAGGCGGTGGTCCGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGTGGCGGTGGAGGCGGTGGTC....2713.0030300
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGGTGGTGGTGGCGGTGGAGG............2511.0011000
......................................................................................................................................AGCAGGCAATCAAGGAGGCCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGCGGTGGAGGCGGTGGT.....2411.0010100
............................................................................................................................................................................................GGAGCCGGAAATCAGGGAAA..........................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGCCCTGGCGGAGGTGCAGGT...........................................................2411.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGCGGAGGTGCAGGTGGCACG.....................................................2411.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGGTGGTGGTGGCGGTGGAGGC...........2611.0010001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGTGGCGGTGGAGGC...........2411.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGTGGCGGTGGAGGCGGTGGT.....2511.0010001
.................................................................................................................................................................TCAAG--------------------GAGGAGCCGGAAATCAGGGA............................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGCGGTGGAGGCGGT........2111.0011000
.....................................................................................................................................................................................................AATCAGGGAAATGGTCAGGGATT..............................................................................................................................................................................................................................................................................................................................................................2311.0011000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGTGGAGGCGGTGGTC....1911.0010100
................................................................................................................................................CAAGGAGGCCAAGGAAATCAAG--------------------G...............................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGTGGTGGCGGTGGAGGCGGTG.......2711.0010100
........................................................................................................................................................................................................CAGGGAAATGGTCAGGGA................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGCGGAGGTGCAGGTGGCAC......................................................2311.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGTGGTGGCGGTGGAGGCGG.........2511.0010100
.............................................................................................................................................................................................................................................................................................GTT------TC---TCC---GGA------------------------------GGTCCGCAG-----------------------------------------------------------------------------------------AACC..................................................................................................................................2411.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGTGGCGGTGGAGGT...........2440.2510100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGTGGCGGT.................18120.0811000
droYak3
AT-CAACGGCAAGGGCAAAACCAAAATC------------AAGTCCAT------------------------------GGTCAAGGAAA------TCAAGGA---GGACCTGGCAATCAAGGAAATCAAGGAGGAGCAGGCAATCAAGGAGGCCAAGGAAATCAAGG--AGGCCAAGGAAATCAAGGAGGACCAGGAAATCAGGGAAATGGTCAAGGATTTAGAGGTCGCAACGTTGGTAACAATCAAGGTGGCG------------------------------GTT------TC---TCC---GGA------------------------------GGTCCGCAG-----------------------------------------------------------------------------------------AACCAGCAGCGTGACAACAGAAACCGTGGTGGT------------------CCACGGCCTAGCGGAGGTCCTGGTGGTATGATGAACAACACCAATATGGGTGG---------TGGAGGTGGTGGTGGTCCGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................CGTTGGTAACAATCAAGGTGGCG------------------------------GT...........................................................................................................................................................................................................................................................................................2511.00100000010000
......................AAAATC------------AAGTCCAT------------------------------GGTCAAGGAAA------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
....................................................................................................................................................................................................................CAAGGATTTAGAGGTCGCAAC.................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................C---TCC---GGA------------------------------GGTCCGCAG-----------------------------------------------------------------------------------------AACCAGCAGC............................................................................................................................2611.00110000000000
.T-CAACGGCAAGGGCAAAACCAAAATC------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
.............................................................................................................................................................................................................................................GTAACAATCAAGGTGGCG------------------------------GT...........................................................................................................................................................................................................................................................................................2011.00100000010000
......................................................................................................................................................................................CAAGGAGGACCAGGAAATCAGG..............................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................................................................................................................CAAGGAGGACCAGGAAATCA................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
........................................................................................................................................................................................................................................................GGTGGCG------------------------------GTT------TC---TCC---GGT------------------------------........................................................................................................................................................................................................................................1820.50101000000000
droEre2
AT-CAACGGCAGGGGCAAAACCAAAATC------------AAGTCCAT------------------------------GGTCAAGGAAA------TCAAGGA---GGGCCT---------------------------GGCAATCAAGGAGGT---------CAAGGAA--------------------------------------ATGGTCAAGGATTTAGAGGTCGCAATGCTGGTAACAATCAGGGTGGCG------------------------------GTT------TC---CCC---GGA------------------------------GGTCCACAG-----------------------------------------------------------------------------------------AACCAGCAGCGTGACAACAGAAACCGAGGTGGT------------------CCACGCCCTGGTGGAGGCCCAGGTGGTATGATGAACAGCACCAATATGGGTGGTGGT---GGCAATGGAGGTGGTGGTCCGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGT------------------CCACGCCCTGGTGGAGGCCCA..............................................................2714.0040000004
.........................................................................................................................................................................................................................ATTTAGAGGTCGCAATGCTG.............................................................................................................................................................................................................................................................................................................................................2012.0020000110
.........................................................................................................................................................................................................................ATTTAGAGGTCGCAATGCTGGTAAC........................................................................................................................................................................................................................................................................................................................................2511.0011000000
............................................................................................................CCT---------------------------GGCAATCAAGGAGGT---------CAAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
........................................................................................................................................................................................................................................................................................................................................................CAG-----------------------------------------------------------------------------------------AACCAGCAGCGTGACAACA...................................................................................................................2211.0010000100
droWil2
CA---AGGACA------------ACAACAG---------------CAA------------------------------GGACAAGGATT------CCGTGGT---GGTCGTGGTGGTG------------------------------------------------GCA--------------------------------------ATAGTCAAGGAGGAGGTGGTGGTGGCGGTAACCATAACCAAGGAGGAGGTGGTGGTG---------------------GCG------GC---G------------------GCCAAGGAGGAGGAGGTGGCGGACATCAA-----------------------------------------------------------------------------------------CATCAGCAACAACGTGACCGAAACCGTGGACCT------------------CGTGGACTTG---GTGGTCATGGGGGTGG---ACAAAAT---AAT---GGAGGTGGC---GGTGGAGGTGGTGGTGGTGGTGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................CCAAGGAGGAGGTGGTGGTG---------------------G............................................................................................................................................................................................................................................................................................2117.00700007
....................................................................................................................................................................................................................................................CCAAGGAGGAGGTGGTGG....................................................................................................................................................................................................................................................................................................................1815.00500113
....................................................................................................................................................................................................................................................CCAAGGAGGAGGTGGTGGTG---------------------GCG------....................................................................................................................................................................................................................................................................................2313.00300012
...............................................................................................................................................................................................................................................................................................................................CCAAGGAGGAGGAGGTGGC........................................................................................................................................................................................................................................1913.00300102
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGGC---GGTGGAGGTGGTGGTGG......2513.00300012
....................................................................................................................................................................................................................................................CCAAGGAGGAGGTGGTGGTG---------------------.............................................................................................................................................................................................................................................................................................2013.00301002
....................................................................................................................................................................................................................CAAGGAGGAGGTGGTGGTGG..................................................................................................................................................................................................................................................................................................................................................2022.50500005
....................................................................................................................................................................................................................CAAGGAGGAGGTGGTGGT....................................................................................................................................................................................................................................................................................................................................................1822.50500005
.....................................................................................................................................................................................................................................................CAAGGAGGAGGTGGTGGTG---------------------G............................................................................................................................................................................................................................................................................................2022.50500005
.....................................................................................................................................................................................................................................................CAAGGAGGAGGTGGTGGT...................................................................................................................................................................................................................................................................................................................1822.50500005
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---GGAGGTGGC---GGTGGAGGTGGTGGTG.......2712.00200110
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACCT------------------CGTGGACTTG---GTGGT.................................................................2312.00200110
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---GGAGGTGGC---GGTGGAGGTGGTGGT........2612.00200110
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGGC---GGTGGAGGTGGTGGTG.......2412.00200002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---GGAGGTGGC---GGTGGAGGTGGTGG.........2512.00200002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT---GGAGGTGGC---GGTGGAGGTGGTG..........2512.00200002
....................................................................................................................................................................................................................................................CCAAGGAGGAGGTGGTGGT...................................................................................................................................................................................................................................................................................................................1912.00200011
....................................................................................................................................................................................................................................................CCAAGGAGGAGGTGGTGGTG---------------------GC...........................................................................................................................................................................................................................................................................................2212.00200002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---GGAGGTGGC---GGTGGAGGTG.............2111.00100001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTG---GTGGTCATGGGGGTGG---ACA................................................2311.00100001
....................................................................................................................................................................................................................................................CCAAGGAGGAGGTGGTGGTG---------------------GCG------G...................................................................................................................................................................................................................................................................................2411.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCGTGGACCT------------------CGTGGA.............................................................................1911.00100010
.....................................................................................................................................................................................................................................................CAAGGAGGAGGTGGTGGTG---------------------GCG------....................................................................................................................................................................................................................................................................................2221.00201001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT---GGAGGTGGC---GGTGGAGG...............2011.00101000
............................................................................................................................................................................................................................................AACCATAACCAAGGAGGAGGT.........................................................................................................................................................................................................................................................................................................................2111.00100010
.............................................................................................................................................................................................................................................................................................................................................GTGGCGGACATCAA-----------------------------------------------------------------------------------------CATCAGC...............................................................................................................................2111.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---GGAGGTGGC---GGTGGAGGTGG............2211.00101000
....................................................................................................................................................................................................................CAAGGAGGAGGTGGTGGTGGCGGTA.............................................................................................................................................................................................................................................................................................................................................2511.00100010
.......................................................................................TT------CCGTGGT---GGTCGTGGTGGTG------------------------------------------------GCA--------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................2511.00101000
.....................................................................................................................................................................................................................................................................................................................................................CATCAA-----------------------------------------------------------------------------------------CATCAGCAACAACGT.......................................................................................................................2111.00100100
................................................................................................CGTGGT---GGTCGTGGTGGTG------------------------------------------------G...................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...................................................................................................................................................................................................................................................................................................................................GGAGGAGGAGGTGGCGGAC....................................................................................................................................................................................................................................1911.00110000
.....................................................................................................................................................................................................................AAGGAGGAGGTGGTGGTGG..................................................................................................................................................................................................................................................................................................................................................1951.00500014
..................................................................................................................GGTG------------------------------------------------GCA--------------------------------------ATAGTCAAGGAGGAGG...........................................................................................................................................................................................................................................................................................................................................................2311.00101000
....................................................................................................................................................................................................................CAAGGAGGAGGTGGTGGTGGCG................................................................................................................................................................................................................................................................................................................................................2221.00201001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACCT------------------CGTGGACTTG---GTGGTC................................................................2411.00100010
...................................................................................................................................................................................................................TCAAGGAGGAGGTGGTGGTGG..................................................................................................................................................................................................................................................................................................................................................2111.00101000
....................................................................................................................................................................................................................................................CCAAGGAGGAGGTGGTGGTG---------------------GCG------GC---A------------------............................................................................................................................................................................................................................................................2611.00101000
...............................................................................................CCGTGGT---GGTCGTGGTGGTG------------------------------------------------G...................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
................................................................................................CGTGGT---GGTCGTGGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
......................................................................................................................................................................................................................................................AAGGAGGAGGTGGTGGTG---------------------GCG------GC---G------------------GC..........................................................................................................................................................................................................................................................2611.00101000
..............................................................................................................................................................................................................................................................................................................................GCCAAGGAGGAGGAGGTGGCGGACA...................................................................................................................................................................................................................................2511.00101000
...................................................................................................................................................................................................................................................ACCAAGGAGGAGGTGGTGGTG---------------------G............................................................................................................................................................................................................................................................................................2211.00100001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGC---GGTGGAGGTGGTGGTGGTGG...2511.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTG---GTGGTCATGGGGGTGG---ACAAA..............................................2511.00100010
........................................................................................................................................................................A--------------------------------------ATAGTCAAGGAGGAGGT..........................................................................................................................................................................................................................................................................................................................................................1811.00100100
..........A------------ACAACAG---------------CAA------------------------------GGACAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGGC---GGTGGAGGTGGTG..........2111.00100001
..................................................................................AAGGATT------CCGTGGT---GGTCGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---ACAAAAT---AAT---GGAGGTGGC---G......................2111.00100100
................................................................................................................................................................................................................................................................................................................................CAAGGAGGAGGAGGTGGCGGAC....................................................................................................................................................................................................................................2211.00100010
......................................................................................ATT------CCGTGGT---GGTCGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
................................................................................................CGTGGT---GGTCGTGGTGGTG------------------------------------------------GCA--------------------------------------A..........................................................................................................................................................................................................................................................................................................................................................................2311.00100001
................................................................................................................................................................................................................................................ATAACCAAGGAGGAGGTGGT......................................................................................................................................................................................................................................................................................................................2011.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---GGAGGTGGC---GGTGGAGGTGGTG..........2411.00101000
......................................................................................................................................................................................................................................................AAGGAGGAGGTGGTGGTG---------------------G............................................................................................................................................................................................................................................................................................1951.00500014
...................................................................................................................................................................................................................................................ACCAAGGAGGAGGTGGTGG....................................................................................................................................................................................................................................................................................................................1911.00101000
.......................................................................................................................................................................................................................GGAGGAGGTGGTGGTGGCGGTAA............................................................................................................................................................................................................................................................................................................................................2311.00101000
.....................................................................................................................................................................................................................AAGGAGGAGGTGGTGGTGGCG................................................................................................................................................................................................................................................................................................................................................2130.67201001
......................................................................................................................................................................................................................................................AAGGAGGAGGTGGTGGTG---------------------GCG------....................................................................................................................................................................................................................................................................................2130.67201001
.............................................................................................................................................................................................................................................................AGGTGGTGGTG---------------------GCG------GC---G------------------GCC.........................................................................................................................................................................................................................................................2020.50100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGC---GGTGGAGGTGGTGGTGGTG....2420.50101000
..................................................................................................................................................................................................................................................................................................................................AGGAGGAGGAGGTGGCGGACT...................................................................................................................................................................................................................................2120.50110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGC---GGTGGAGGTGGTGGTGGTG....2620.50100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---GGTGGAGGTGGTGGTGGTGGT..2320.50101000
........................................................................................................................................................................................................................GAGGAGGTGGTGGTGGCGGT..............................................................................................................................................................................................................................................................................................................................................2020.50101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGC---GGTGGAGGTGGTGGTG.......2120.50101000
...............................................................................................................................................................................................................................................................GTGGTGGTG---------------------GCG------GC---G------------------GCC.........................................................................................................................................................................................................................................................1830.33100010
........................................................................................................................................................................................................................................................GGAGGAGGTGGTGGTG---------------------GCG------GC---G------------------GC..........................................................................................................................................................................................................................................................2430.33101000
..........................................................................................................................................................................................................................GGAGGTGGTGGTGGCGGT..............................................................................................................................................................................................................................................................................................................................................1850.20101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC---GGTGGAGGTGGTGGT........1860.17101000
...........................................................................................................................................................................................................................................................GGAGGTGGTGGTG---------------------GCG------GC---...............................................................................................................................................................................................................................................................................1870.14101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGGTGGTGGTGGTGGTGG2370.14100001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGTGGTGGTGGTGGTGG2280.13101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGGTGGTGGTGGTGGTG.22100.10100001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGGTGGTGGTGGT.....18180.06100100
droGri2
GCTCAAGCCCAA------------GCTCAGGCTCAAGCTCAGGTCCATGCGCACTCTCAAGCTCAAAACCAA------G------CATTTAGAGTTCGCGGAGGC---GGTGGTGGTG------------------------------------------------G-----------------------------------------------------------------------------TGGAAGTGGCGGCGGCGGTGGTGGTGGCGGCG---------GAG------GC---G------------------GACAAGGCGGT---------GGACGCGAT------------------AGAAATCGCGGATCCCGTGGTGGTGGAGGCGGCGGCGGACCTAACTCTGGCGGCGGTAACAA--------------------------CACACAGCGC---GGCGATGATTTCTTTATAGCCCAACGTC------------TTCGCAGCAT---TAG---------------------------------------TGG-CCCCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCCCAACGTC------------TTCGCA..........................................................2011.00110
............................................................................................................................................................................................................................................................................................................................................................................................CGTGGTGGTGGAGGCGGC............................................................................................................................................................................1811.00101
...............................................................CAAAACCAA------G------CATTTAGAGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
....................................................................................................................................................................................................................................................................GGTGGTGGTGGCGGCG---------GAG------GC---...............................................................................................................................................................................................................................................................................2120.50110
......................................................................................................GGC---GGTGGTGGTG------------------------------------------------G-----------------------------------------------------------------------------TGGA..................................................................................................................................................................................................................................................................................................................................1870.14110

Generated: 05/17/2015 at 10:05 PM