dan_3294

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTCCGCCACGAGCTGATGAACCGCGAAGCCAACTTCTTCGAGTCCACCAGGTATGTAAAGTCTATCATCGCTATTGGACTTCGGTTGCCAACAGAAGCCGCCTCATCATCGTCTGGGGGAGATTAGGTTTTCTTCGTATTTCTGCCCGTTGGACTGCCCGTGGGTAGTCCGTGTTGGATCATCTCATAATTCTTTCGCGGCTGTGGTTAAATATAGAGGCGTAGCACACACACACACCCCATGCTGATGGC ************************************************(((((..(((((((..........)))))))(((((.........)))))(((((........)))))((((........)))))))))..((((((..(((.....))).)))))).(((((..(((............)))..))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V055 head	V105 male body	V039 embryo	V106 head
..........................AGCCAACTTCTTCGAGTCCACC...........................................................................................................................................................................................................	22	0	1	2.00	2	1	0	0	0	0	1
..........................AGCCAACTTCTTCGAGTCCACCAGCT.......................................................................................................................................................................................................	26	1	1	2.00	2	1	1	0	0	0	0
.............................CAACTTCTTCGAGTCCACCAGCT.......................................................................................................................................................................................................	23	1	1	1.00	1	0	1	0	0	0	0
........CGAGCTGATGAACCGCGAAG...............................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
........................GAAGCCAACTTCTTCGAGTCCACCAGC........................................................................................................................................................................................................	27	1	1	1.00	1	1	0	0	0	0	0
........CGAGCTGATGAACCGCGAAGCC.............................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	1	0	0
..........................ATCCAACTTCTTCGAGTCCACCAGC........................................................................................................................................................................................................	25	2	1	1.00	1	1	0	0	0	0	0
..CCGCCACGAGCTGATGAACC.....................................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0
......CACGGGCTGATGAACCGCGAGGCG.............................................................................................................................................................................................................................	24	3	1	1.00	1	0	0	1	0	0	0
........................GAAGCCAACTTCTTCGAGTCCAC............................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0
.................GAACCGCGAAGCCAACTT........................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................GTGTAGCACACCCAAACACCCC...........	22	3	3	0.33	1	1	0	0	0	0	0
....................................................................................................................................................................................................................ATAGAGGCATAGCACACCA....................	19	3	9	0.11	1	0	0	1	0	0	0
....................................................................................................................................................................................................GCGGTTGTGGTTAATTAT.....................................	18	2	10	0.10	1	0	0	0	1	0	0
.......................................................................TATTAGACTTCGGTTGCG..................................................................................................................................................................	18	2	18	0.06	1	0	0	1	0	0	0

AAGGCGGTGCTCGACTACTTGGCGCTTCGGTTGAAGAAGCTCAGGTGGTCCATACATTTCAGATAGTAGCGATAACCTGAAGCCAACGGTTGTCTTCGGCGGAGTAGTAGCAGACCCCCTCTAATCCAAAAGAAGCATAAAGACGGGCAACCTGACGGGCACCCATCAGGCACAACCTAGTAGAGTATTAAGAAAGCGCCGACACCAATTTATATCTCCGCATCGTGTGTGTGTGTGGGGTACGACTACCG ************************************************(((((..(((((((..........)))))))(((((.........)))))(((((........)))))((((........)))))))))..((((((..(((.....))).)))))).(((((..(((............)))..))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	V055 head
...........CGACTACTTGGCGCTTCGGTT...........................................................................................................................................................................................................................	21	0	1	1.00	1	1	0
..............CTACATAGTGCTTCGGTTGAA........................................................................................................................................................................................................................	21	3	2	0.50	1	0	1
..................................................................................................................................................................CAATCAGGCACAACCTACC......................................................................	19	3	15	0.07	1	1	0
........................................................................................................................................................................................GGACTAAGAAAGCGCCGCC................................................	19	3	15	0.07	1	1	0
..............................................................................................................................................................................................................................TCGCGAGTGTGAGTGGGGT..........	19	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13417:1136892-1137142 +	dan_3294	TTCCGCCACGAGCTGATGAACCGCGAAGCCAACTTCTTCGAGTCCACCAGGTATGTAAAGTCT-----ATCATCGCTA---------------------------------------------------------TTGGACTTCGGTTGCCAACAGAAG----------------------------------------------CCGCCTCATCATCG--------------------------------------------TCTGGGGGAGAT-------TAGGTTT-------TCTTCGTATTTCTGCCCGTTGGACTGCC--------CGTGGGT-------------AGTC-----CGT--GTTGGATCATCTCATA----------ATTCTTTCGC------GG--C--TGTGGTTAAATATAGAGGCGTA--G------------------------------------------------------CA--------CA---------------CACACACA-CCCCAT---GCTGATGGC--
droBip1	scf7180000395529:236798-237079 -		TTCCGTCACGAGCTGATGAACCGTGAGGCCAACTTCTTCGAGTCCACCAGGTGAGTC----TTA----ATCAT-----------------------TTAA-----------------------------------TTGGACTTCGGTTGCCAACAGAGA----------------------------------------------GCGCT--ATCATCGCTACCCACC----------GATTGGGTGAATTGACAGTTTTTCGT-TCGGGGAGAT-------TAGGTTTTTGGTTTTT-------------TCGTTGGACTGCC--------TGTGG-----------------------------GTTGGATCATCTCATA----------AGTCTTTCGC------GG--C--TGTGGTTAAATATAGAGGCGTA---------------------------------------------------TGTATGTA--------CATACATCT-----TGCCACACACACCGCCTGGCCGCTGATGGC--
droKik1	scf7180000302696:439436-439492 +		TTCCGCCACGAGCTGATGAACCGCGAGGCCAACTTCTTCGAGTCCACCAGGTGAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454073:1781648-1781847 +		TTCCGACACGAGCTGATGAACCGTGAGGCCAACTTCTTCGAGTCCACCAGGTGAGGA----TTAGAACAGATTACCAAAGAT-----------TAGTGTT------------------------------------------CAGGCA--------AGGAATTAGGTATTTATGCT------------------------------------------------------------------------------------------AAGT------------------------------TATAA-------------------------------------------------------CTCTC-----GTTC-------GGTCGCAGTTGATTCTCATAATTCTTG-G--C--T----CTAAATATAGACGAGCACTTCTTTCCACATCGCCTGTG---------------------------------------------------------------------------------------GGT--
droEle1	scf7180000490751:1170724-1170966 +		TTCCGCCACGAGCTGATGAACCGCGAGGCCAACTTCTTCGAGTCCACCAGGTGAGGA----TTA----------------------------------------------------------CTTTATAAGCGATTCCGATTCCGGCT---AACTAAGGT-------------------------ATAAGTGTTTGATTTTGGAAGC-------CATTGCTATCCAGCGGTTCCCATAGAT----------G-----------C-TTAGGGATAGTGTAAAGA---------------------AAC------G-------------TGA----------------------------TT----CGCTTGGTTCATCTCATA----------GTTC---------TGGGG--C--T----CTAAATATAGAGGCGCACATCTTGCCACATCGCCTACT---------------------------------------------------------------------------------------GGT--
droRho1	scf7180000761121:137086-137332 -		TTCCGCCACGAGCTGATGAACCGCGAGGCAAACTTCTTCGAGTCCACCAGGTGAGGA----TTA-------------------------------GTGCTGC----GGCTA-----------CTTTGCAA---------ATACCGGCT---AACTAAGGAATAAGG-------------------ACAAGTGTTTGGTTATTGGAAC-------CAT--------AGCAGTTCCCATTCAT----------T-----------C-TGAGGAATAGTGTGAAGA---------------------ATC------G-------------T------------------------------TTCCCTC-----GGTG-------GGTC-----TGATTCTATTGATGCTTG-G--C--T----CTAAATATAGAGGCGCACATCTTGCCACATCGCCTACT---------------------------------------------------------------------------------------GGT--
droBia1	scf7180000302069:1105913-1106102 -		TTCCGCCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGGTGAGGC----CTG----------------------------------------------------------CCA---GAGT--------------------------------GGTATTTCAGCTGAGCGCGGGGCGAA-------------------------------------------------AG----------T-----------C-GGAGGGATAGGGCGAAGA---------------------AAC------------------------------------------------CC--ACCACC-----GCCC-------AGTC-----CGATTC---------GGGGATTCAAT----CTAAATATAG--GCGCACATCTTGCCACACTGCCTGCT---------------------------------------------------------------------------------------GGT--
droTak1	scf7180000415169:796710-796925 -		TTCCGCCACGAGCTGATGAACCGCGAGGCCAACTTCTTCGAGTCCACCAGGTGAGGA----TTAGGTGATGATAACGAT-----------------------------------------------------------GATTTCGGTTAGGAACTAAGG----------------------------------------------G-------------TTATCC----------ATAGAG----------GATAATTT----CTTGAGGGATAG-------A---------------------AAT------------------------------------------------CTATC----CGCTTGATTCATCCCACA----------GTTCTAATAGTTATAG-G--C--T----CTAAATATAGAGGAACACATCTTGCCACATCGCCTTCT---------------------------------------------------------------------------------------GGT--
droEug1	scf7180000409230:833598-833804 -		TTCCGCCACGAGCTGATGAATCGCGAGGCTAACTTCTTTGAGTCCACCAGGTGAGTA----A-------------CGATG--------------AGTGAT-----------------------------------TCAAACTTTGGG---------A-------GG-------------------ATAAATGTTAGTTTT------------------------------------------------------------------------------------------------TTTTTATATTTC---------------CCGCTGATTCGTAGGG-------------AACC-----CAT--ATATTCTCATTTCATA----------ATTC---------TTGGG--C--T----CTAAATATAG--GCACAAATCTTGCCACATCGG-----------------------------------------------------------------------------CGCCTA---ACTGTGGTC--
dm3	chrX:19499666-19499718 +		TTCCGTCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	x:18393002-18393062 +		TTCCGTCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGGTGAGCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--
droSec2	scaffold_8:1779961-1780012 +		TTCCGTCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	X:11837159-11837459 -		TTCCGTCACGAGCTGATGAACCGCGAGGCTAACTTCTTCGAGTCCACCAGGTGAGCGGG--TTA----------CCGATGATACCAGTGATACTAGTGATAGCAGTGGGTACAACTGTGGGT---------------------------------------------------------------------------TTT------------------------------------------------------------------------------------------------ACTG------C------C-------------TGATTCGCCGGGGTATAGAGCGATGGCACC--ACCAA--CTCCCTTCGTCGTCTG----------GTTG---------TGGGCATC--T----CTAAATATAG--GCGCACATCTTGCCACATCGCCCACTGGTCTGGAGCACTTCACTCACAGATTCGTACGTATGTACATATGTTTGTACA----TATGTACAACATACA-CACCAA---ACAGTGGGC--
droEre2	scaffold_4690:9727759-9728027 +		TTCCGTCACGAGCTGATGAACCGCGAGGCCAACTTCTTCGAGTCCACCAGGTGAGCGGA--TTG-------------------------------GTGATACCAGTGGGTACAACAGTGGGT---------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------GTTATATTTG---------------CCGGG------------TATAGTGCGATGGCCC-----CAA--CTCCCTTCATCGCCTA----------GTTG---------TGGGCTCC--T----CTAAATATAG--GCTCACATCTTGCCACATCGACCACTGGTCTGGAGCACTTCACTCACAGATTCGTACGTATGTA--------TGTACAGTTGTATGTACCACATACA-CACCAA---ACGGTGGGCTT
dp5	XL_group1a:5645726-5645777 +		TTCCGCCACGAGCTGATGAACCGGGAGGCAAACTTTTTCGAGTCCACAAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_63:301731-301782 -		TTCCGCCACGAGCTGATGAACCGGGAGGCAAACTTTTTCGAGTCCACAAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004909:6560127-6560178 -		TTCCGTCACGAATTGATGAATCGTGAGGCCAATTTCTTTGAATCAACCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13042:3602419-3602474 +		TTCCGTCACGAGCTGATGAACCGCGAGGCCAATTTCTTCGAGTCCACCAGGTAGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6308:827434-827486 +		TTCCGTCACGAGCTGATGAACCGCGAGGCGAATTTCTTCGAATCAACCAGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_14853:10129777-10129834 +		TTTCGTCACGAGCTGATGAACCGTGAGGCGAACTTCTTCGAGTCAACCAGGTAAGCA----A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TTCCGCCACGAGCTGATGAACCGCGAAGCCAACTTCTTCGAGTCCACCAGGTATGTAAAGTCT-----ATCATCGCTA---------------------------------------------------------TTGGACTTCGGTTGCCAACAGAAG----------------------------------------------CCGCCTCATCATCG--------------------------------------------TCTGGGGGAGAT-------TAGGTTT-------TCTTCGTATTTCTGCCCGTTGGACTGCC--------CGTGGGT-------------AGTC-----CGT--GTTGGATCATCTCATA----------ATTCTTTCGC------GG--C--TGTGGTTAAATATAGAGGCGTA--G------------------------------------------------------CA--------CA---------------CACACACA-CCCCAT---GCTGATGGC--	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................AGCCAACTTCTTCGAGTCCACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	1
........CGAGCTGATGAACCGCGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................GAAGCCAACTTCTTCGAGTCCACCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
........CGAGCTGATGAACCGCGAAGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..CCGCCACGAGCTGATGAACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................GAAGCCAACTTCTTCGAGTCCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.................GAACCGCGAAGCCAACTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0

droBip1

TTCCGTCACGAGCTGATGAACCGTGAGGCCAACTTCTTCGAGTCCACCAGGTGAGTC----TTA----ATCAT-----------------------TTAA-----------------------------------TTGGACTTCGGTTGCCAACAGAGA----------------------------------------------GCGCT--ATCATCGCTACCCACC----------GATTGGGTGAATTGACAGTTTTTCGT-TCGGGGAGAT-------TAGGTTTTTGGTTTTT-------------TCGTTGGACTGCC--------TGTGG-----------------------------GTTGGATCATCTCATA----------AGTCTTTCGC------GG--C--TGTGGTTAAATATAGAGGCGTA---------------------------------------------------TGTATGTA--------CATACATCT-----TGCCACACACACCGCCTGGCCGCTGATGGC--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTCCGCCACGAGCTGATGAACCGCGAGGCCAACTTCTTCGAGTCCACCAGGTGAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTCCGACACGAGCTGATGAACCGTGAGGCCAACTTCTTCGAGTCCACCAGGTGAGGA----TTAGAACAGATTACCAAAGAT-----------TAGTGTT------------------------------------------CAGGCA--------AGGAATTAGGTATTTATGCT------------------------------------------------------------------------------------------AAGT------------------------------TATAA-------------------------------------------------------CTCTC-----GTTC-------GGTCGCAGTTGATTCTCATAATTCTTG-G--C--T----CTAAATATAGACGAGCACTTCTTTCCACATCGCCTGTG---------------------------------------------------------------------------------------GGT--	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTCCGCCACGAGCTGATGAACCGCGAGGCCAACTTCTTCGAGTCCACCAGGTGAGGA----TTA----------------------------------------------------------CTTTATAAGCGATTCCGATTCCGGCT---AACTAAGGT-------------------------ATAAGTGTTTGATTTTGGAAGC-------CATTGCTATCCAGCGGTTCCCATAGAT----------G-----------C-TTAGGGATAGTGTAAAGA---------------------AAC------G-------------TGA----------------------------TT----CGCTTGGTTCATCTCATA----------GTTC---------TGGGG--C--T----CTAAATATAGAGGCGCACATCTTGCCACATCGCCTACT---------------------------------------------------------------------------------------GGT--	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTCCGCCACGAGCTGATGAACCGCGAGGCAAACTTCTTCGAGTCCACCAGGTGAGGA----TTA-------------------------------GTGCTGC----GGCTA-----------CTTTGCAA---------ATACCGGCT---AACTAAGGAATAAGG-------------------ACAAGTGTTTGGTTATTGGAAC-------CAT--------AGCAGTTCCCATTCAT----------T-----------C-TGAGGAATAGTGTGAAGA---------------------ATC------G-------------T------------------------------TTCCCTC-----GGTG-------GGTC-----TGATTCTATTGATGCTTG-G--C--T----CTAAATATAGAGGCGCACATCTTGCCACATCGCCTACT---------------------------------------------------------------------------------------GGT--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTCCGCCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGGTGAGGC----CTG----------------------------------------------------------CCA---GAGT--------------------------------GGTATTTCAGCTGAGCGCGGGGCGAA-------------------------------------------------AG----------T-----------C-GGAGGGATAGGGCGAAGA---------------------AAC------------------------------------------------CC--ACCACC-----GCCC-------AGTC-----CGATTC---------GGGGATTCAAT----CTAAATATAG--GCGCACATCTTGCCACACTGCCTGCT---------------------------------------------------------------------------------------GGT--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTCCGCCACGAGCTGATGAACCGCGAGGCCAACTTCTTCGAGTCCACCAGGTGAGGA----TTAGGTGATGATAACGAT-----------------------------------------------------------GATTTCGGTTAGGAACTAAGG----------------------------------------------G-------------TTATCC----------ATAGAG----------GATAATTT----CTTGAGGGATAG-------A---------------------AAT------------------------------------------------CTATC----CGCTTGATTCATCCCACA----------GTTCTAATAGTTATAG-G--C--T----CTAAATATAGAGGAACACATCTTGCCACATCGCCTTCT---------------------------------------------------------------------------------------GGT--	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTCCGCCACGAGCTGATGAATCGCGAGGCTAACTTCTTTGAGTCCACCAGGTGAGTA----A-------------CGATG--------------AGTGAT-----------------------------------TCAAACTTTGGG---------A-------GG-------------------ATAAATGTTAGTTTT------------------------------------------------------------------------------------------------TTTTTATATTTC---------------CCGCTGATTCGTAGGG-------------AACC-----CAT--ATATTCTCATTTCATA----------ATTC---------TTGGG--C--T----CTAAATATAG--GCACAAATCTTGCCACATCGG-----------------------------------------------------------------------------CGCCTA---ACTGTGGTC--	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTCCGTCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........CGAGCTGATGAACCGCGAGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................GCGAGGCGAACTTCTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTCACGAGCTGATGAACCGCGAGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GAGCTGATGAACCGCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CCGTCACGAGCTGATGAACCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GCTGATGAACCGCGAGGCGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CACGAGCTGATGAACCGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTCCGTCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGGTGAGCGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.TCCGTCACGAGCTGATGAACCGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CGAGCTGATGAACCGCGAGGCGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
......CACGAGCTGATGAACCGCGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GATGAACCGCGAGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........CGAGCTGATGAACCGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....GTCACGAGCTGATGAACCGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......CACGAGCTGATGAACCGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ATGAACCGCGAGGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTCCGTCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......CACGAGCTGATGAACCGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	1	0
....GTCACGAGCTGATGAACCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
TTCCGTCACGAGCTGATGAACCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1

droYak3

TTCCGTCACGAGCTGATGAACCGCGAGGCTAACTTCTTCGAGTCCACCAGGTGAGCGGG--TTA----------CCGATGATACCAGTGATACTAGTGATAGCAGTGGGTACAACTGTGGGT---------------------------------------------------------------------------TTT------------------------------------------------------------------------------------------------ACTG------C------C-------------TGATTCGCCGGGGTATAGAGCGATGGCACC--ACCAA--CTCCCTTCGTCGTCTG----------GTTG---------TGGGCATC--T----CTAAATATAG--GCGCACATCTTGCCACATCGCCCACTGGTCTGGAGCACTTCACTCACAGATTCGTACGTATGTACATATGTTTGTACA----TATGTACAACATACA-CACCAA---ACAGTGGGC--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................CGCGAGGCTAACTTCTTCGAGTCCACCAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	31	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3
..........................GGCTAACTTCTTCGAGTCCACCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................GAGGCTAACTTCTTCGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......CACGAGCTGATGAACCGCGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................CTAACTTCTTCGAGTCCACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GATTCGCCGGGGTATAGAGC..........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CCGGGGTATAGAGCGATGGCAC..................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................AACCGCGAGGCTAACTTCTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................A--CTCCCTTCGTCGTCTG----------GT............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TTCCGTCACGAGCTGATGAACCGCGAGGCCAACTTCTTCGAGTCCACCAGGTGAGCGGA--TTG-------------------------------GTGATACCAGTGGGTACAACAGTGGGT---------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------GTTATATTTG---------------CCGGG------------TATAGTGCGATGGCCC-----CAA--CTCCCTTCATCGCCTA----------GTTG---------TGGGCTCC--T----CTAAATATAG--GCTCACATCTTGCCACATCGACCACTGGTCTGGAGCACTTCACTCACAGATTCGTACGTATGTA--------TGTACAGTTGTATGTACCACATACA-CACCAA---ACGGTGGGCTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........CGAGCTGATGAACCGCGAGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	1	0	0
..........................GGCCAACTTCTTCGAGTCCACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.................GAACCGCGAGGCCAACTTCTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...............ATGAACCGCGAGGCCAACTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
TTCCGTCACGAGCTGATGAACCGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTTCACTCACAGATTCGTAC.............................................................	24	1	1.00	1	0	1	0	0	0	0	0
.TCCGTCACGAGCTGATGAACCGCGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0

dp5

TTCCGCCACGAGCTGATGAACCGGGAGGCAAACTTTTTCGAGTCCACAAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......CACGAGCTGATGAACCGGGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	2
.TCCGCCACGAGCTGATGAACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...CGCCACGAGCTGATGAACCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........AGCTGATGAACCGGGAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............CTGATGAACCGGGAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GAGCTGATGAACCGGGAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......ACGAGCTGATGAACCGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
TTCCGCCACGAGCTGATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......CACGAGCTGATGAACCGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GAGCTGATGAACCGGGAGGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............GATGAACCGGGAGGCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....GCCACGAGCTGATGAACCGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......ACGAGCTGATGAACCGGGAGGCAAACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....GCCACGAGCTGATGAACCGGGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......ACGAGCTGATGAACCGGGAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........CGAGCTGATGAACCGGGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................GAACCGGGAGGCAAACTTTTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...CGCCACGAGCTGATGAACCGGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TTCCGCCACGAGCTGATGAACCGGGAGGCAAACTTTTTCGAGTCCACAAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......CACGAGCTGATGAACCGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	2	0	1	0	0	0
..............GATGAACCGGGAGGCAAACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.......ACGAGCTGATGAACCGGGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0

droWil2

TTCCGTCACGAATTGATGAATCGTGAGGCCAATTTCTTTGAATCAACCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....GTCACGAATTGATGAATCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...................ATCGTGAGGCCAATTTCTTTGAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
.............TGATGAATCGTGAGGCCAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...........ATTGATGAATCGTGAGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1
........CGAATTGATGAATCGTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..................AATCGTGAGGCCAATTTCTTTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
............TTGATGAATCGTGAGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...............................ATTTCTTTGAATCAACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...........ATTGATGAATCGTGAGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0

droVir3

TTCCGTCACGAGCTGATGAACCGCGAGGCCAATTTCTTCGAGTCCACCAGGTAGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......CACGAGCTGATGAACCGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GCCAATTTCTTCGAGTCCACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AGGCCAATTTCTTCGAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CGAGCTGATGAACCGCGAGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GCGAGGCCAATTTCTTCGAGTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTCACGAGCTGATGAACCGCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........GAGCTGATGAACCGCGAGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ACGAGCTGATGAACCGCGAGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GATGAACCGCGAGGCCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAATTTCTTCGAGTCCACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACCGCGAGGCCAATTTCTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTCACGAGCTGATGAACCGCGAGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CACGAGCTGATGAACCGCGAGGCCAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GGCCAATTTCTTCGAGTCCACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GAACCGCGAGGCCAATTTCTTCGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CCGTCACGAGCTGATGAACCGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTCACGAGCTGATGAACCGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAATTTCTTCGAGTCCACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CACGAGCTGATGAACCGCGAGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TTCTTCGAGTCCACCAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTCCGTCACGAGCTGATGAACCGCGAGGCGAATTTCTTCGAATCAACCAGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............GATGAACCGCGAGGCGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	1	0	0	0	0	3
......................GCGAGGCGAATTTCTTCGAATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........CGAGCTGATGAACCGCGAGGCGAATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
............CTGATGAACCGCGAGGCGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droGri2

TTTCGTCACGAGCTGATGAACCGTGAGGCGAACTTCTTCGAGTCAACCAGGTAAGCA----A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_3294

scaffold_13417:1136942-1137092 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads