dan_3290

exon [dana_GLEANR_2706:1]; exon [dana_GLEANR_2706:2]; CDS [Dana\GF20294-cds]; CDS [Dana\GF20294-cds]; intron [Dana\GF20294-in]

##################################################-------------------------------------------------------------################################################## TGCGCTGCATCGAGAAACTGGATGACGTGAAGACCCAGAACGAGGATCAGGTGAGATGGGATTTTGGATAAAAGTATTCCATAGTTAGTAACTCCGATCTCCTTCTCTTAGAACCTTGGCGTGGAAATCGTGCGCCGTGCCCTGCGCATGCCCTGCATGAC ************************************************..(((((.(((((.((((.........)))).))........))).)))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V106 head	V105 male body	V039 embryo
..................................................GTGAGATGGGATTTTGGATAAA.........................................................................................	22	0	1	6.00	6	0	0	5	1	0
..................................................GTGAGATGGGATTTTGGATAAAAGTAT....................................................................................	27	0	1	4.00	4	1	0	0	2	1
..................................................GTGAGATGGGATTTTGGATAAAAG.......................................................................................	24	0	1	3.00	3	0	1	1	1	0
........................................................................................TAACTCCGATCTCCTTCTCTTAG..................................................	23	0	1	3.00	3	0	3	0	0	0
..............................................................................................................GAACCTTGGCGTGGAAATCGTGCGCC.........................	26	0	1	3.00	3	2	0	0	1	0
.................................................................................TAGTTAGTAACTCCGATCTCCTTCTC......................................................	26	0	1	3.00	3	3	0	0	0	0
........................................................................................TAACTCCGATCTCCTTCTCTT....................................................	21	0	1	2.00	2	0	1	0	0	1
............................................................................................................CAGAACCTTGGCGTGGAAATCGTGCGCC.........................	28	1	1	2.00	2	2	0	0	0	0
..................................................GTGAGATGGGATTTTGGATAAAAGTATT...................................................................................	28	0	1	2.00	2	0	0	2	0	0
.........................................................................................AACTCCGAACTCCTTCTCTTAGT.................................................	23	2	1	1.00	1	0	1	0	0	0
....................GATGACGTGAAGACCCAGAACGAGGAT..................................................................................................................	27	0	1	1.00	1	0	1	0	0	0
.GCGCTGCATCGAGAAACTGGATGACG......................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0
..........................................................................................ACTCCGATCTCCTTCTCTTAG..................................................	21	0	1	1.00	1	0	1	0	0	0
..............................................................................................................................ATCGTGCGCCGTGCCCTG.................	18	0	1	1.00	1	0	1	0	0	0
..................................................GTGAGATGGGATTTTGGAT............................................................................................	19	0	1	1.00	1	0	0	1	0	0
.........................................................................................................GATCAGAACCTTGGCGTGGAAAT.................................	23	3	1	1.00	1	0	1	0	0	0
.....................................................................................................CTTCTCTTAGAACCTTGGCGTG......................................	22	0	1	1.00	1	1	0	0	0	0
...................GGATGACGTGAAGACCCAGAAC........................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
..................................................GTGAGATGGGATTTTGGATACAAGTAT....................................................................................	27	1	1	1.00	1	0	0	0	1	0
..................TGGATGACGTGAAGACCCAGAACG.......................................................................................................................	24	0	1	1.00	1	0	0	0	1	0
..................................................GTGAGATGGGATTTTGGATA...........................................................................................	20	0	1	1.00	1	0	0	1	0	0
..............................................................................................................GAACCTTGGCGTGGAAATCGT..............................	21	0	1	1.00	1	0	0	0	1	0
............................................................................................................CAGAACCTTGGCGTGGAAATCGTGC............................	25	1	1	1.00	1	0	0	1	0	0
.............................................................................................................AGAACCTTGGCGTGGAAAT.................................	19	0	1	1.00	1	0	0	0	1	0
........................................................................................................................GTGGAAATCGTGCGCCGT.......................	18	0	1	1.00	1	1	0	0	0	0
.GCGCTGCATCGAGAAACTGGATGACGT.....................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
...............................................................................................................AACCTTGGCGTGGAAATCGTTCGCC.........................	25	1	1	1.00	1	1	0	0	0	0
....CTGCATCGAGAAACTGGAC..........................................................................................................................................	19	1	1	1.00	1	1	0	0	0	0
..................TGGATGACGTGAAGACCCA............................................................................................................................	19	0	1	1.00	1	0	1	0	0	0
..............................................................................................................GAACCTTGGCGTGGAAATCGTGCGC..........................	25	0	1	1.00	1	0	1	0	0	0
..................................................GTGAGATGGGATTTTGGAA............................................................................................	19	1	2	1.00	2	0	0	2	0	0
.............................................................................................................AAAACCTTGGCGTGGAAATCGTG.............................	23	1	1	1.00	1	1	0	0	0	0
........................................................................................TAACTCCGATCTCCTTCTCT.....................................................	20	0	1	1.00	1	0	0	1	0	0
........................................................................................TAACTCCGATCTCCTTCTCC.....................................................	20	1	1	1.00	1	1	0	0	0	0
...............AACTGGATGACGTGAAGACCC.............................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
..................................................GTGAGATGGGATTTTGGAAAAA.........................................................................................	22	1	1	1.00	1	0	0	0	1	0
..........CGAGAAACTGGATGACGTGAAGA................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
........................................................................................................................GTGGAAATCGTGCGCCGTGCCCTGCGCA.............	28	0	1	1.00	1	1	0	0	0	0
..................................................GTGAGATGGGATTTTGGATAA..........................................................................................	21	0	1	1.00	1	0	1	0	0	0
.............GAAACTGGATGACGTGAAGACCC.............................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
.........................................................................................................GATCAGAACCTTGGCGTGGAAATCGTGC............................	28	3	1	1.00	1	1	0	0	0	0
...........GAGAAACTGGATGACGTGAAGACCC.............................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
..................................................GTGAGATGGGATTTTGGATAAAAGT......................................................................................	25	0	1	1.00	1	0	0	0	1	0
.......................................................................................................................CGTGGAAATCGTGCGCCGTGCCCTGCGCA.............	29	0	1	1.00	1	1	0	0	0	0
.............GAAACTGGATGACGTGAA..................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
...................................................TGAGATGGGATTTTGGATAAA.........................................................................................	21	0	1	1.00	1	0	1	0	0	0
........................................................................................TAACTCCGATCTCCTTCTCTTAT..................................................	23	1	1	1.00	1	0	0	1	0	0
...............................GACCCAGAACGAGGATCAGA..............................................................................................................	20	1	1	1.00	1	0	1	0	0	0
..........................................................................................................AGCAGAACCTTGGCGTGGAAAT.................................	22	3	2	0.50	1	1	0	0	0	0
..........................................................................................................ATCAGAACCTTGGCGTGGA....................................	19	2	3	0.33	1	0	1	0	0	0
...............................................CTGGTGGGATGGGATTTTG...............................................................................................	19	2	4	0.25	1	0	1	0	0	0
..........................................AGGATCAGATGAGTTGGGAGT..................................................................................................	21	3	4	0.25	1	0	0	0	1	0
..............................................TCTGGTGGGATGGGATGTTG...............................................................................................	20	3	14	0.14	2	0	2	0	0	0
.............................AAGACCCGGAACGAGAAAC.................................................................................................................	19	3	20	0.05	1	0	1	0	0	0

ACGCGACGTAGCTCTTTGACCTACTGCACTTCTGGGTCTTGCTCCTAGTCCACTCTACCCTAAAACCTATTTTCATAAGGTATCAATCATTGAGGCTAGAGGAAGAGAATCTTGGAACCGCACCTTTAGCACGCGGCACGGGACGCGTACGGGACGTACTG ************************************************..(((((.(((((.((((.........)))).))........))).)))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	V039 embryo	V106 head
................................................TCCACAATACCCTACAACCTA............................................................................................	21	3	3	0.33	1	0	1	0
............................................................................................................ATCTGGGAACCGCACCAT...................................	18	2	5	0.20	1	1	0	0
..........................................................................................GGAGGCTAGACGAAGATAAT...................................................	20	3	7	0.14	1	1	0	0
..............................................................................................................................................GCGCGAACGGGACGTACTA	19	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13417:910128-910288 -	dan_3290	TGCGCTGCATCGAGAAACTGGATGACGTGAAGACCCAGAACGAGGATCAGGTGAGATGG-------------------G----------------ATT--TTGGATAAAAGTATTCCATAGTTAGTAACTCC-GATCTC-----------------------------------------------------------------------------------------CTTC-TCTTAGAACCTTGGCGTGGAAATCGTGCGCCGTGCCCTGCGCATGCCCTGCATGAC
droBip1	scf7180000396362:282289-282450 +		TGCGCTGCATCGAGAAGCTCGATGGCGTCGAGACCCAGAACGAGGACCAGGTGAGATGG-------------------G----------------ATT--TCAATGAAAATTGTACCATAGTTTCTAACTCTTGTTG---------------------------------------TC--------------------------------------------------CTCC-ACTTAGAACCTTGGCGTGGAGATCGTGCGCCGTGCCCTGCGCATGCCCTGCATGAC
droKik1	scf7180000302724:185125-185286 +		TGCGCTGCATTGAGAAGTTGGATGGCGTCCAGACCACCAACCAGGATCAGGTAAGATGAACTTGATCTCCTTAATGGCT----------------C--AGA---------------------------------------------------------------AT----------------------------AAGTGTTAA--------CCCTTTGA---------TCTT-GAACAGAACCTCGGCGTGGAGATTGTGCGCCGTGCCCTGCGCATGCCCTGCATGAC
droFic1	scf7180000453882:956783-956946 +		TGCGCTGCATCGAGAAGCTGGAGGCTGTGAAGACCAGCAACGAGGATCAGGTGAGGTCACC----------------------------------------------------------------------------TA--TACCCAGTTTCC-----TAG-GAGT-CTT--T------------------ACTAAGCTCTTC--------CCC--CTT---------CCTT-TGGTAGAACCTCGGTGTGGAGATCGTGCGCCGTGCCCTGCGCATGCCCTGCATGAC
droEle1	scf7180000491024:537105-537204 -		TGCGCTGCATCCAGAAGCTGAACGACCTCAAGGGCGCCAACGAGGACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAACCTGGGCATCGAGATCATCCGGCGTGCCCTGCGCATGCCCTGCCTCAC
droRho1	scf7180000776532:310968-311131 -		TGCGCTGCATCGAGAAGCTGGACTCCGTCAAGACCTCCAACGAGGATCAGGTAAGATCA-------------------G----------------ACG--CCTTCTAAAT-------------------------------TCTT-------T-----TCG-CAAA-CTT--T------------------ATTAACCCAACT-------------TAT---------TCCC-GCTCAGAACCTCGGCGTGGAGATTGTCCGTCGCGCCTTGCGCATGCCCTGCATGAC
droBia1	scf7180000302126:3997238-3997406 +		TGCGCTGCATCGAGAAGTTGGACGCCGTGAAGACCTCCAACGAGGATCAGGTAGGCTGAGG-----------------------------------CGAGGCT--------------------------------------TCTT--------TTGGTCTGACAAT-CTT--T------------------ACTGATTC----G-CTGTAAT-C--CCT---------TCCC-CCCCAGAACCTCGGCGTGGAGATCGTCCGCCGTGCCCTGCGCATGCCCTGCATGAC
droTak1	scf7180000415871:426425-426524 +		TGCGATGCATTCAGAAGCTGAACGACCTGAAGGGCGCCAACGAGGACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAACATGGGAATCGAAATCATCCGGCGAGCGCTGCGTATGCCCTGCCTCAC
droEug1	scf7180000409631:132489-132651 +		TACGTTGCATTGAAAAGCTCGACTCTGTTAAGACCACCAACGAGGATCAGGTAAGAGCA-------------------G----------------TC--GCTT--------------------------------------TCGT-------TCTGTTTAG-CAAT-CTA--T------------------ATTAAATTAACT--------T----CCA---------TCCC-TCACAGAACCTCGGCGTTGAGATTGTCCGTCGTGCCCTGCGCATGCCTTGCCTGAC
dm3	chrX:11005395-11005557 +		TGCGTTGCATTGAGAAGCTCGAGGGTGTCGAGACCACCAACGAGGATCAGGTACGATTATC----------------------------------------------------------------------------TA--TCTC-------TCTTTTCTG-TTAT-TCGTGT------------------ATTAATGT----CTAT-----------------GAAATCTCATAACAGAAACTCGGCGTGGAGATTGTGCGTCGTGCCCTGCGCATGCCATGCATGAC
droSim2	x:10453527-10453692 +		TGCGTTGCATTGAGAAGCTCGAGGGTGTCGAGACCACCAACGAGGATCAGGTACGATCATC----------------------------------------------------------------------------TA--TCTCTTA----TCTGTTCTG-TTAT-CCGTGT------------------ATTAATGT----GTAT-----------------GAAATCCCATAACAGAAACTCGGCGTGGAGATTGTGCGTCGTGCCCTGCGCATGCCATGCATGAC
droSec2	scaffold_15:1708749-1708911 +		TGCGTTGCATTGAGAAGCTCGAGGGTGTCGAGACCACCAACGAGGATCAGGTACGATTATC----------------------------------------------------------------------------AA--TCCC-------TCTGTTCTG-TTAT-CCGTGT------------------ATTAATGT----GTAT-----------------GAAATCCCATAACAGAAACTCGGCGTGGAGATTGTGCGTCGTGCTCTGCGCATGCCATGCATGAC
droYak3	X:11121515-11121678 -		TGCGTTGCATTGAGAAGCTGGAGGGTGTCCAGACCACCAATGAGGATCAGGTACGCACATC----------------------------------------------------------------------------TCTTTCC-CTC----TCTGTTCTG-TTAT-CCG--T------------------ATTAACCT----GTAT-----------------GAAATCCC-GCACAGAAACTCGGCGTGGAGATTGTGCGTCGTGCCCTGCGCATGCCATGCTTGAC
droEre2	scaffold_4690:4125862-4126023 -		TGCGTTGCATTGAGAAGCTGGAGGGTGTCCAGACCACCAATGAGGATCAGGTAAGAACATC----------------------------------------------------------------------------TCCTTCTC-------TCTGCTCTG-TTAT-TCG--T------------------ATTAATCT----GTAT-----------------GAAATCCC-TTACAGAAACTCGGCGTGGAGATTGTGCGTCGTGCCCTGCGCATGCCATGCATGAC
dp5	XL_group1a:5704472-5704633 -		TCCGCTGCATCGAGAAACTGGACACCGTGGCCGTCCAGAATGCCGATCAGGTAATTGGA-------------------T----------------C--AGAAT--------------------------------------TCTT-------CT-----TGA-GAA-C--------TCTTTCACTTAT---------------A-TTGTGAT----TAA---------TCTT-TTCCAGAGCCTTGGAGTGGACATCGTGCGCCGTGCCCTCCGCATGCCCTGCATGAC
droPer2	scaffold_63:240285-240445 +		TCCGCTGCATCGAGAAACTGGACACCGTGGCCGTCCAGAATGCCGATCAGGTAATTGGA-------------------T----------------C--AGAAT--------------------------------------TCTT-------TC-----TGA-GAA-C--------TCTTTCACTTAT---------------A-TTGTGAT-----TA---------TCTT-TTCCAGAGCCTTGGAGTGGACATCGTGCGCCGTGCCCTCCGCATGCCCTGCATGAC
droWil2	scf2_1100000004590:1548440-1548595 +		TCCGTTGCATCGAGAAATTGGACAGTGTTGGCACTCAGAACGAGGATCAGGTAAGAATAACAAG-------------CGAAGACAGAGAGATGCAATC--C------------------------------------T--------------C-------------------------------------------------------TAAT-C--CTG---------TTTC-TTGCAGAACTTGGGCGTTGAAATTGTGCGTCGTGCCCTTCGCATGCCTTGCATGAC
droVir3	scaffold_13042:3094483-3094641 -		TGCGCTGCATCGAGAAACTGGACAGCGTCGCCACCACCAACGAGGATCAGGTTAGTTGCTG--------------------------------------------------------------------------------TCCC-------TTTGTT--G-CAATTCCA--T------------------ATCCA---------------T----TAATATTTTACACTCC-AACCAGAACCTCGGCGTGGACATTGTGCGTCGCGCCCTTCGCATGCCCTGCATGAC
droMoj3	scaffold_6328:572703-572860 +		TGCGCTGCATCGAGAAACTGGACGCAGTCAGCACACAGAACGAGGATCAGGTAAGATAT-------------------G----------------ATA--ACGCT------------------------------------CATC-------CAAGCGCTG-TAAT----------------------CTCTTCAATCT------------------CT---------TCAT-CTATAGAAACTCGGCGTGGATATTGTGCGTCGTGCTCTGCGCATGCCCTGCATGAC
droGri2	scaffold_15081:3146955-3147123 +		TCCGCTGCATCGAGAAACTGGATGCCGTCGCCACTCAGAATGAGGATCAGGTACCCAACTC----------------------------------------------------------------------------GCATGG-CCATTCGCC-----TAG-TCCT-CCT--TAAT------------CTCATCAATCTCGTT--------T----CAC---------TTTC-TTACAGAACCTGGGCGTGGACATTGTGCGTCGAGCACTGCGCATGCCCTGCATGAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TGCGCTGCATCGAGAAACTGGATGACGTGAAGACCCAGAACGAGGATCAGGTGAGATGG-------------------G----------------ATT--TTGGATAAAAGTATTCCATAGTTAGTAACTCC-GATCTC-----------------------------------------------------------------------------------------CTTC-TCTTAGAACCTTGGCGTGGAAATCGTGCGCCGTGCCCTGCGCATGCCCTGCATGAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................GTGAGATGG-------------------G----------------ATT--TTGGATAAA....................................................................................................................................................................................	22	1	6.00	6	0	0	0	0	1	5
..................................................GTGAGATGG-------------------G----------------ATT--TTGGATAAAAGTAT...............................................................................................................................................................................	27	1	4.00	4	0	1	1	0	2	0
..................................................GTGAGATGG-------------------G----------------ATT--TTGGATAAAAG..................................................................................................................................................................................	24	1	3.00	3	1	0	0	0	1	1
.............................................................................................................................TAACTCC-GATCTC-----------------------------------------------------------------------------------------CTTC-TCTTAG..................................................	23	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................................................................................................................GAACCTTGGCGTGGAAATCGTGCGCC.........................	26	1	3.00	3	0	2	0	0	1	0
......................................................................................................................TAGTTAGTAACTCC-GATCTC-----------------------------------------------------------------------------------------CTTC-TC......................................................	26	1	3.00	3	0	3	0	0	0	0
.............................................................................................................................TAACTCC-GATCTC-----------------------------------------------------------------------------------------CTTC-TCTT....................................................	21	1	2.00	2	1	0	1	0	0	0
..................................................GTGAGATGG-------------------G----------------ATT--TTGGATAAAAGTATT..............................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	2
....................GATGACGTGAAGACCCAGAACGAGGAT..................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.GCGCTGCATCGAGAAACTGGATGACG......................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................ACTCC-GATCTC-----------------------------------------------------------------------------------------CTTC-TCTTAG..................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................ATCGTGCGCCGTGCCCTG.................	18	1	1.00	1	1	0	0	0	0	0
..................................................GTGAGATGG-------------------G----------------ATT--TTGGAT.......................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................CTTC-TCTTAGAACCTTGGCGTG......................................	22	1	1.00	1	0	1	0	0	0	0
...................GGATGACGTGAAGACCCAGAAC........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................TGGATGACGTGAAGACCCAGAACG.......................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
..................................................GTGAGATGG-------------------G----------------ATT--TTGGATA......................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................GAACCTTGGCGTGGAAATCGT..............................	21	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................AGAACCTTGGCGTGGAAAT.................................	19	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................GTGGAAATCGTGCGCCGT.......................	18	1	1.00	1	0	1	0	0	0	0
.GCGCTGCATCGAGAAACTGGATGACGT.....................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
....CTGCATCGAGAAACTGGAC..........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..................TGGATGACGTGAAGACCCA............................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................GAACCTTGGCGTGGAAATCGTGCGC..........................	25	1	1.00	1	1	0	0	0	0	0
..................................................GTGAGATGG-------------------G----------------ATT--TTGGAA.......................................................................................................................................................................................	19	2	1.00	2	0	0	0	0	0	2
.............................................................................................................................TAACTCC-GATCTC-----------------------------------------------------------------------------------------CTTC-TCT.....................................................	20	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................TAACTCC-GATCTC-----------------------------------------------------------------------------------------CTTC-TCC.....................................................	20	1	1.00	1	0	1	0	0	0	0
...............AACTGGATGACGTGAAGACCC.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..........CGAGAAACTGGATGACGTGAAGA................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................GTGGAAATCGTGCGCCGTGCCCTGCGCA.............	28	1	1.00	1	0	1	0	0	0	0
..................................................GTGAGATGG-------------------G----------------ATT--TTGGATAA.....................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............GAAACTGGATGACGTGAAGACCC.............................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...........GAGAAACTGGATGACGTGAAGACCC.............................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..................................................GTGAGATGG-------------------G----------------ATT--TTGGATAAAAGT.................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................CGTGGAAATCGTGCGCCGTGCCCTGCGCA.............	29	1	1.00	1	0	1	0	0	0	0
.............GAAACTGGATGACGTGAA..................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...................................................TGAGATGG-------------------G----------------ATT--TTGGATAAA....................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................TAACTCC-GATCTC-----------------------------------------------------------------------------------------CTTC-TCTTAT..................................................	23	1	1.00	1	0	0	0	0	0	1
...............................GACCCAGAACGAGGATCAGA..............................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droBip1

TGCGCTGCATCGAGAAGCTCGATGGCGTCGAGACCCAGAACGAGGACCAGGTGAGATGG-------------------G----------------ATT--TCAATGAAAATTGTACCATAGTTTCTAACTCTTGTTG---------------------------------------TC--------------------------------------------------CTCC-ACTTAGAACCTTGGCGTGGAGATCGTGCGCCGTGCCCTGCGCATGCCCTGCATGAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCGCTGCATTGAGAAGTTGGATGGCGTCCAGACCACCAACCAGGATCAGGTAAGATGAACTTGATCTCCTTAATGGCT----------------C--AGA---------------------------------------------------------------AT----------------------------AAGTGTTAA--------CCCTTTGA---------TCTT-GAACAGAACCTCGGCGTGGAGATTGTGCGCCGTGCCCTGCGCATGCCCTGCATGAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGCGCTGCATCGAGAAGCTGGAGGCTGTGAAGACCAGCAACGAGGATCAGGTGAGGTCACC----------------------------------------------------------------------------TA--TACCCAGTTTCC-----TAG-GAGT-CTT--T------------------ACTAAGCTCTTC--------CCC--CTT---------CCTT-TGGTAGAACCTCGGTGTGGAGATCGTGCGCCGTGCCCTGCGCATGCCCTGCATGAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGCGCTGCATCCAGAAGCTGAACGACCTCAAGGGCGCCAACGAGGACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAACCTGGGCATCGAGATCATCCGGCGTGCCCTGCGCATGCCCTGCCTCAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGCGCTGCATCGAGAAGCTGGACTCCGTCAAGACCTCCAACGAGGATCAGGTAAGATCA-------------------G----------------ACG--CCTTCTAAAT-------------------------------TCTT-------T-----TCG-CAAA-CTT--T------------------ATTAACCCAACT-------------TAT---------TCCC-GCTCAGAACCTCGGCGTGGAGATTGTCCGTCGCGCCTTGCGCATGCCCTGCATGAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGCGCTGCATCGAGAAGTTGGACGCCGTGAAGACCTCCAACGAGGATCAGGTAGGCTGAGG-----------------------------------CGAGGCT--------------------------------------TCTT--------TTGGTCTGACAAT-CTT--T------------------ACTGATTC----G-CTGTAAT-C--CCT---------TCCC-CCCCAGAACCTCGGCGTGGAGATCGTCCGCCGTGCCCTGCGCATGCCCTGCATGAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGCGATGCATTCAGAAGCTGAACGACCTGAAGGGCGCCAACGAGGACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAACATGGGAATCGAAATCATCCGGCGAGCGCTGCGTATGCCCTGCCTCAC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TACGTTGCATTGAAAAGCTCGACTCTGTTAAGACCACCAACGAGGATCAGGTAAGAGCA-------------------G----------------TC--GCTT--------------------------------------TCGT-------TCTGTTTAG-CAAT-CTA--T------------------ATTAAATTAACT--------T----CCA---------TCCC-TCACAGAACCTCGGCGTTGAGATTGTCCGTCGTGCCCTGCGCATGCCTTGCCTGAC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGCGTTGCATTGAGAAGCTCGAGGGTGTCGAGACCACCAACGAGGATCAGGTACGATTATC----------------------------------------------------------------------------TA--TCTC-------TCTTTTCTG-TTAT-TCGTGT------------------ATTAATGT----CTAT-----------------GAAATCTCATAACAGAAACTCGGCGTGGAGATTGTGCGTCGTGCCCTGCGCATGCCATGCATGAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........ATTGAGAAGCTCGAGGGTGTC....................................................................................................................................................................................................................................................................	21	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................GATTGTGCGTCGTGCCCTGCGCA.............	23	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	2	0	0	1	1	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	0	0	0
.....TGCATTGAGAAGCTCGAGGGTGTCGAG.................................................................................................................................................................................................................................................................	27	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	3	0	0	0	0	0
.GCGTTGCATTGAGAAGCTCGA...........................................................................................................................................................................................................................................................................	21	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................GAGATTGTGCGTCGTGCCCTGCGCA.............	25	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............GAAGCTCGAGGGTGTCGAGAC...............................................................................................................................................................................................................................................................	21	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................AGAAACTCGGCGTGGAGATTGTGC............................	24	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................AGAAACTCGGCGTGGAGATT................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GTTGCATTGAGAAGCTCGAG..........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CTCGAGGGTGTCGAGACCACCAA.........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TGCATTGAGAAGCTCGAGGG........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TGCATTGAGAAGCTCGAGGGTGTCGAGAC...............................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TGCGTTGCATTGAGAAGCTCGAGGGTGTCGAGACCACCAACGAGGATCAGGTACGATCATC----------------------------------------------------------------------------TA--TCTCTTA----TCTGTTCTG-TTAT-CCGTGT------------------ATTAATGT----GTAT-----------------GAAATCCCATAACAGAAACTCGGCGTGGAGATTGTGCGTCGTGCCCTGCGCATGCCATGCATGAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................GTCGAGACCACCAACGAGGAT..................................................................................................................................................................................................................................................	21	1	3.00	3	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................CGAGGGTGTCGAGACCACC...........................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GTCGAGACCACCAACGAGGATC.................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TTGAGAAGCTCGAGGGTGT.....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................ACTCGGCGTGGAGATTGTGCGTC.........................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GTCGAGACCACCAACGAGGATCAGA..............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TTGTGCGTCGTGCCCTGCG...............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GGAGATTGTGCGTCGTGC.....................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CGTGGAGATTGTGCGTC.........................	17	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........TGAGAAGCTCGAGGGTGTCGAGACCAC............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....TGCATTGAGAAGCTCGAGGGTGTC....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................CAGAAACTCGGCGTGGAGATTGTGCGTC.........................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AGAAACTCGGCGTGG.....................................	15	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........TGAGAAGCTCGAGGGTGTCGA..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GTGGAGATTGTGCGT..........................	15	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

TGCGTTGCATTGAGAAGCTCGAGGGTGTCGAGACCACCAACGAGGATCAGGTACGATTATC----------------------------------------------------------------------------AA--TCCC-------TCTGTTCTG-TTAT-CCGTGT------------------ATTAATGT----GTAT-----------------GAAATCCCATAACAGAAACTCGGCGTGGAGATTGTGCGTCGTGCTCTGCGCATGCCATGCATGAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................................................................GTGGAGATTGTGCGTCGT.......................	18	1	3.00	3	0	0	3	0
.............................................................................................................................................................................................................................................................GATTGTGCGTCGTGCTCTGC................	20	1	2.00	2	0	0	2	0
........................................................................................................................................................................................................................................................GTGGAGATTGTGCGTCGTG......................	19	1	2.00	2	0	0	2	0
.............................................................................................................................................................................................................................................................GATTGTGCGTCGTGCTCTGCGC..............	22	1	2.00	2	0	0	2	0
.....TGCATTGAGAAGCTCGAGGGT.......................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0
TGCGTTGCATTGAGAAGCTCG............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
..CGTTGCATTGAGAAGCTCGAGGGT.......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................CTCGGCGTGGAGATTGTGCGTC.........................	22	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................GTGGAGATTGTGCGTCGTGCTCTG.................	24	1	1.00	1	0	0	1	0
....................GAGGGTGTCGAGACCACCAACGAG.....................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
....................GAGGGTGTCGAGACCACCAACGAGGAT..................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................AACTCGGCGTGGAGATTGTGCGTCGTGC.....................	28	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................................CGGCGTGGAGATTGTGCGTC.........................	20	1	1.00	1	0	0	1	0
...GTTGCATTGAGAAGCTCGAG..........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................GAGATTGTGCGTCGTGCTCTGC................	22	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................GTGCGTCGTGCTCTGCGCATG...........	21	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................AAACTCGGCGTGGAGATTGTGC............................	22	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................................................GATTGTGCGTCGTGCTCT..................	18	1	1.00	1	0	0	1	0
...............AGCTCGAGGGTGTCGAGACCACCAACGA......................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................AGAAACTCGGCGTGGAGATTGTGC............................	24	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................AACTCGGCGTGGAGATTGTGCGTC.........................	24	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................ACTCGGCGTGGAGATTGTGCGT..........................	22	1	1.00	1	0	0	1	0
..........................GTCGAGACCACCAACGAGGAT..................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................GAGATTGTGCGTCGTGCTCTGCGC..............	24	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................GATTGTGCGTCGTGCTCTGCG...............	21	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................GTGGAGATTGTGCGTCGTGCTCTGCGC..............	27	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................TCGTGCTCTGCGCATGCCATG......	21	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................GAAACTCGGCGTGGAGAT.................................	18	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................AGAAACTCGGCGTGGAGA..................................	18	1	1.00	1	0	0	1	0
.........TTGAGAAGCTCGAGGGTGT.....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................CGTGGAGATTGTGCGTCGTG......................	20	1	1.00	1	0	0	1	0
.............GAAGCTCGAGGGTGTCGAGACCACCA..........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
TGCGTTGCATTGAGAAGCTCGAGGG........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
...GTTGCATTGAGAAGCTCGAGGG........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................CGTGGAGATTGTGCGTCGTGC.....................	21	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................AGAAACTCGGCGTGGAGATTGTGCGTC.........................	27	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................................................................................TTGTGCGTCGTGCTCTGCGCA.............	21	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................ATTGTGCGTCGTGCTCTGCGCA.............	22	1	1.00	1	1	0	0	0
.............GAAGCTCGAGGGTGTCGAGA................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0

droYak3

TGCGTTGCATTGAGAAGCTGGAGGGTGTCCAGACCACCAATGAGGATCAGGTACGCACATC----------------------------------------------------------------------------TCTTTCC-CTC----TCTGTTCTG-TTAT-CCG--T------------------ATTAACCT----GTAT-----------------GAAATCCC-GCACAGAAACTCGGCGTGGAGATTGTGCGTCGTGCCCTGCGCATGCCATGCTTGAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................................................................GGCGTGGAGATTGTGCGTC.........................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................ATTGTGCGTCGTGCCCTGCGC..............	21	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................GATTGTGCGTCGTGCCCTGCGCA.............	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........GAGAAGCTGGAGGGTGTCCAG.................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...GTTGCATTGAGAAGCTGGAGGGTGT.....................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................CAGAAACTCGGCGTGGAGATT................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....TGCATTGAGAAGCTGGAGGGC.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................AGATTGTGCGTCGTGCCCTGC................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...GTTGCATTGAGAAGCTGGAG..........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................GGAGATTGTGCGTCGTGCCCTGC................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................AACTCGGCGTGGAGATTGTGCGTCGTG......................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GTGGAGATTGTGCGTCGTGCCCTGCGC..............	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....TGCATTGAGAAGCTGGAGGGTGT.....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GATTGTGCGTCGTGCCCTGCGCATGC..........	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................GGAGATTGTGCGTCGTGCCCTGCGC..............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GATTGTGCGTCGTGCCCTGC................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....TGCATTGAGAAGCTGGAGGGTGTC....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................GTGGAGATTGTGCGTCGTGCCCTGCG...............	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....TGCATTGAGAAGCTGGAGGGT.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........ATTGAGAAGCTGGAGGGT.......................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................GTCCAGACCACCAATGAG.....................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..CGTTGCATTGAGAAGCTGGAGGGT.......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................TCGGCGTGGAGATTGTGCGTCGTGCC....................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

TGCGTTGCATTGAGAAGCTGGAGGGTGTCCAGACCACCAATGAGGATCAGGTAAGAACATC----------------------------------------------------------------------------TCCTTCTC-------TCTGCTCTG-TTAT-TCG--T------------------ATTAATCT----GTAT-----------------GAAATCCC-TTACAGAAACTCGGCGTGGAGATTGTGCGTCGTGCCCTGCGCATGCCATGCATGAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....TGCATTGAGAAGCTGGAGGGT.......................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	1	2	0
......GCATTGAGAAGCTGGAGGGT.......................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	1	1	0	0
.....TGCATTGAGAAGCTGGAGGGTGT.....................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0
........................................................................................................................................................................................................................................................GTGGAGATTGTGCGTCGTGCCCTGC................	25	1	2.00	2	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................CTCGGCGTGGAGATTGTGCGTC.........................	22	1	2.00	2	0	1	0	0	1	0	0
........................................................................................................................................................................................................................................................GTGGAGATTGTGCGTCGTGCC....................	21	1	2.00	2	0	0	0	1	1	0	0
.................................................................................................................................................................................................................................................ACTCGGCGTGGAGATTGTGCGTC.........................	23	1	2.00	2	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................CAGAAACTCGGCGTGGAGATTGTGC............................	25	1	2.00	2	0	0	0	0	0	2	0
...GTTGCATTGAGAAGCTGGAGGGTGTCCA..................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................CGTGCCCTGCGCATGCCATGCATGAC	26	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................CTCGGCGTGGAGATTGTGC............................	19	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................GTGGAGATTGTGCGTCGTGCCCTGCGC..............	27	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................GATTGTGCGTCGTGCCCTG.................	19	1	1.00	1	1	0	0	0	0	0	0
......GCATTGAGAAGCTGGAGGGTGT.....................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..CGTTGCATTGAGAAGCTGGAGGGT.......................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GGCGTGGAGATTGTGCGTC.........................	19	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................GATTGTGCGTCGTGCCCTGCGCATGC..........	26	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................AACTCGGCGTGGAGATTGTGC............................	21	1	1.00	1	0	1	0	0	0	0	0
...........GAGAAGCTGGAGGGTGTCCAGACCACC...........................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
......GCATTGAGAAGCTGGAGGGTGTCCAG.................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
..........TGAGAAGCTGGAGGGTGTCCA..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................CAGAAACTCGGCGTGGAGATTGTGCGT..........................	27	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................GGAGATTGTGCGTCGTGCCCTG.................	22	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................GTGGAGATTGTGCGTCGTGCCT...................	22	1	1.00	1	0	0	0	0	0	1	0
........ATTGAGAAGCTGGAGGGT.......................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................ATTGTGCGTCGTGCCCTGCGC..............	21	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................AGATTGTGCGTCGTGCCCTGC................	21	1	1.00	1	0	0	0	0	1	0	0

dp5

TCCGCTGCATCGAGAAACTGGACACCGTGGCCGTCCAGAATGCCGATCAGGTAATTGGA-------------------T----------------C--AGAAT--------------------------------------TCTT-------CT-----TGA-GAA-C--------TCTTTCACTTAT---------------A-TTGTGAT----TAA---------TCTT-TTCCAGAGCCTTGGAGTGGACATCGTGCGCCGTGCCCTCCGCATGCCCTGCATGAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................CACCGTGGCCGTCCAGAATGCCGATC.................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........ATCGAGAAACTGGACACCGTGGC..................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GGACATCGTGCGCCGTGCCCTCCGC..............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TTGGAGTGGACATCGTGCGCCGTGCC....................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........CGAGAAACTGGACACCGTGGCCGTCC.............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.....TGCATCGAGAAACTGGACACCGTGG...................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................TGGAGTGGACATCGTGCGCCGT.......................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................GAGTGGACATCGTGCGCCG........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AGCCTTGGAGTGGACATCGTGCGCC.........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GAGCCTTGGAGTGGACATCGTGC............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GCCTTGGAGTGGACATCGTGCGCC.........................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................CTTGGAGTGGACATCGTGCGCC.........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TGGAGTGGACATCGTGCGCCGTG......................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................CACCGTGGCCGTCCAGAATGCC.....................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GAGCCTTGGAGTGGACATC................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TGGACATCGTGCGCCGTGCC....................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................TTGGAGTGGACATCGTGCG...........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................GGACATCGTGCGCCGTGCC....................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GGACATCGTGCGCCGTGCCC...................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GGACATCGTGCGCCGTGCCCTC.................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................CACCGTGGCCGTCCAGAAT........................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................GAGTGGACATCGTGCGCC.........................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TGGACATCGTGCGCCGTGCCCTC.................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CGAGAAACTGGACACCGTGGC..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0

droPer2

TCCGCTGCATCGAGAAACTGGACACCGTGGCCGTCCAGAATGCCGATCAGGTAATTGGA-------------------T----------------C--AGAAT--------------------------------------TCTT-------TC-----TGA-GAA-C--------TCTTTCACTTAT---------------A-TTGTGAT-----TA---------TCTT-TTCCAGAGCCTTGGAGTGGACATCGTGCGCCGTGCCCTCCGCATGCCCTGCATGAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................................................................................CAGAGCCTTGGAGTGGAC...................................	18	1	5.00	5	5	0	0	0	0	0
..........CGAGAAACTGGACACCGT.....................................................................................................................................................................................................................................................................	18	1	5.00	5	5	0	0	0	0	0
.......CATCGAGAAACTGGACACCGT.....................................................................................................................................................................................................................................................................	21	1	3.00	3	2	0	1	0	0	0
............................GGCCGTCCAGAATGCCGATCAG...............................................................................................................................................................................................................................................	22	1	2.00	2	1	1	0	0	0	0
........ATCGAGAAACTGGACACCGT.....................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
...................GGACACCGTGGCCGTCCAGAATGCC.....................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
...............................CGTCCAGAATGCCGATCAG...............................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
........ATCGAGAAACTGGACACCGG.....................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
...GCTGCATCGAGAAACTGGACACC.......................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
........ATCGAGAAACTGGACACCGTGGCCGG...............................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................CTTGGAGTGGACATCGTGCGCCGTGCCC...................	28	1	1.00	1	0	1	0	0	0	0
.......CATCGAGAAACTGGACACCGG.....................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................ATCGTGCGCCGTGCCCTC.................	18	1	1.00	1	1	0	0	0	0	0
...........GAGAAACTGGACACCGTGGCCG................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............AAACTGGACACCGTGGCCGTCCAGA..........................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..........CGAGAAACTGGACACCGG.....................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................CTTGGAGTGGACATCGTGCGCCGTGC.....................	26	1	1.00	1	0	0	0	0	0	1
..........CGAGAAACTGGACACCGC.....................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........ATCGAGAAACTGGACACCGTGGCCGC...............................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........CGAGAAACTGGACACCGTGGCCGT...............................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................GGACATCGTGCGCCGTGC.....................	18	1	1.00	1	0	1	0	0	0	0

droWil2

TCCGTTGCATCGAGAAATTGGACAGTGTTGGCACTCAGAACGAGGATCAGGTAAGAATAACAAG-------------CGAAGACAGAGAGATGCAATC--C------------------------------------T--------------C-------------------------------------------------------TAAT-C--CTG---------TTTC-TTGCAGAACTTGGGCGTTGAAATTGTGCGTCGTGCCCTTCGCATGCCTTGCATGAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................................GTTGAAATTGTGCGTCGTGC.....................	20	1	5.00	5	1	1	0	2	1
................................................................................................................................................................................................................................................ACTTGGGCGTTGAAATTGTGCGTC.........................	24	1	5.00	5	0	0	1	4	0
.............................................................................................................................................................................................................................................AGAACTTGGGCGTTGAAATTGTGCGTC.........................	27	1	4.00	4	2	0	0	2	0
.....................................................................................................................................................................................................................................................GGCGTTGAAATTGTGCGTC.........................	19	1	3.00	3	0	0	0	3	0
...............AATTGGACAGTGTTGGCACTCAGAAC........................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................TGAAATTGTGCGTCGTGCC....................	19	1	2.00	2	0	0	0	2	0
...GTTGCATCGAGAAATTGGAC..........................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0
..........CGAGAAATTGGACAGTGTTGGC.................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0
.................................................................................................................................................................................................................................................CTTGGGCGTTGAAATTGTGCGTC.........................	23	1	2.00	2	0	0	0	2	0
...............AATTGGACAGTGTTGGCA................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
..............AAATTGGACAGTGTTGGCACTC.............................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0
..................................................................................................................................................................................................................................................TTGGGCGTTGAAATTGTGCGTC.........................	22	1	2.00	2	0	0	0	2	0
........................................................................................................................................................................................................................................................GTTGAAATTGTGCGTCGTGCCCTT.................	24	1	2.00	2	0	0	1	1	0
............................................................................................................................................................................................................................................CAGAACTTGGGCGTTGAAATTGTGC............................	25	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................CTTGGGCGTTGAAATTGTGC............................	20	1	1.00	1	0	0	0	1	0
..................................................GTAAGAATAACAAG-------------CGAAGACAGAG.........................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................AAATTGTGCGTCGTGCCC...................	18	1	1.00	1	1	0	0	0	0
................................ACTCAGAACGAGGATCAGA..............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
......................CAGTGTTGGCACTCAGAACGAGG....................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
......................CAGTGTTGGCACTCAGAACGAGGATC.................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................GGGCGTTGAAATTGTGCGTC.........................	20	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................GAACTTGGGCGTTGAAATTGTGCGTC.........................	26	1	1.00	1	0	0	1	0	0
..........................GTTGGCACTCAGAACGAGGAT..................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................AATTGTGCGTCGTGCCCTTCGCA.............	23	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................GAAATTGTGCGTCGTGCCCTTCGC..............	24	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................GCGTTGAAATTGTGCGTCGTGCCCT..................	25	1	1.00	1	0	0	1	0	0
..........................GTTGGCACTCAGAACGAGG....................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................GTTGAAATTGTGCGTCGTG......................	19	1	1.00	1	0	0	0	0	1
.............GAAATTGGACAGTGTTGGCA................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..........CGAGAAATTGGACAGTGTTGGCACTC.............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
...............AATTGGACAGTGTTGGCACTCAGAA.........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..........................................................AACAAG-------------CGAAGACAGAGAGATGCAATC--.............................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
..........CGAGAAATTGGACAGTGTTGGCACTCA............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
..........................GTTGGCACTCAGAACGAGGATCAGA..............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.....TGCATCGAGAAATTGGACAGTGTTGGC.................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.......CATCGAGAAATTGGACAGTGTTGGC.................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..........CGAGAAATTGGACAGTGTTGGCA................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.....TGCATCGAGAAATTGGACAGTGTTGG..................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................AACTTGGGCGTTGAAATTGTGCGTC.........................	25	1	1.00	1	0	0	0	1	0
.......................AGTGTTGGCACTCAGAACGAGGATCA................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................TGGGCGTTGAAATTGTGC............................	18	1	1.00	1	0	0	0	1	0
...GTTGCATCGAGAAATTGGA...........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...............AATTGGACAGTGTTGGCACT..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................TGAAATTGTGCGTCGTGCCCTT.................	22	1	1.00	1	0	0	0	1	0
..........CGAGAAATTGGACAGTGTTGGCACT..............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................TGAAATTGTGCGTCGTGCCC...................	20	1	1.00	1	0	0	1	0	0
........ATCGAGAAATTGGACAGTGTTGGC.................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
..........CGAGAAATTGGACAGTGTTGG..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...GTTGCATCGAGAAATTGGACA.........................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0

droVir3

TGCGCTGCATCGAGAAACTGGACAGCGTCGCCACCACCAACGAGGATCAGGTTAGTTGCTG--------------------------------------------------------------------------------TCCC-------TTTGTT--G-CAATTCCA--T------------------ATCCA---------------T----TAATATTTTACACTCC-AACCAGAACCTCGGCGTGGACATTGTGCGTCGCGCCCTTCGCATGCCCTGCATGAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....CTGCATCGAGAAACTGGACAG........................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TGTGCGTCGCGCCCTTCGCA.............	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
TGCGCTGCATCGAGAAACTGGACAGC.......................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GTGCGTCGCGCCCTTCGCATGC..........	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
..........................................................................................................................................................................................................................................................GGACATTGTGCGTCGCGCCCTTCGCAT............	27	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GGACATTGTGCGTCGCGCC....................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CGCCACCACCAACGAGGATCAGAAC............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GAACCTCGGCGTGGACATTGTGCGTC.........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........CGAGAAACTGGACAGCGTCGCCACC..............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GTGCGTCGCGCCCTTCGCATGCC.........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GTGGACATTGTGCGTCGCGCCCTTCGCA.............	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CGTCGCCACCACCAACGA......................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GAAACTGGACAGCGTCGCCACC..............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GAACCTCGGCGTGGACATTGTGC............................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................GACATTGTGCGTCGCGCCCTTCGCATGC..........	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................GTGCGTCGCGCCCTTCGCATGCCCTGCAC...	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................GCGTGGACATTGTGCGTC.........................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ATCGAGAAACTGGACAGCGT.....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TGCATCGAGAAACTGGACAGC.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AACCTCGGCGTGGACATTGTG.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CGGCGTGGACATTGTGCGTCGC.......................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AGAACCTCGGCGTGGACA..................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GTGGACATTGTGCGTCGCG......................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GCATCGAGAAACTGGACAGCGTC....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CGTGGACATTGTGCGTCGC.......................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........CGAGAAACTGGACAGCGTC....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CGGCGTGGACATTGTGCGTC.........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................CGGCGTGGACATTGTGCGTCGCG......................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGAGAAACTGGACAGCGTCGCCACCAC............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GCTGCATCGAGAAACTGGAC..........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GAAACTGGACAGCGTCGCCACCAC............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CCACCACCAACGAGGATCA................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........ATCGAGAAACTGGACAGC.......................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................CGGCGTGGACATTGTGCGT..........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GAGAAACTGGACAGCGTC....................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGCTGCATCGAGAAACTGGAC..........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ATCGAGAAACTGGACAGCGTC....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GACAGCGTCGCCACCACCAACGAGG....................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GGACATTGTGCGTCGCGCCCT..................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CGGCGTGGACATTGTGCGTCG........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GACAGCGTCGCCACCACCAACGAGGA...................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................CATTGTGCGTCGCGCCCTTCGCATGC..........	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCGCTGCATCGAGAAACTGGACAGC.......................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GTGGACATTGTGCGTCGCGCCCTTCGCAT............	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GGACATTGTGCGTCGCGCCCTTCGCATGCCCT.......	32	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...........GAGAAACTGGACAGCGTCGC..................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGAGAAACTGGACAGCGT.....................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................ATTGTGCGTCGCGCCCTTC................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TGTGCGTCGCGCCCTTCGCATGCCCT.......	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGCGCTGCATCGAGAAACTGGACGCAGTCAGCACACAGAACGAGGATCAGGTAAGATAT-------------------G----------------ATA--ACGCT------------------------------------CATC-------CAAGCGCTG-TAAT----------------------CTCTTCAATCT------------------CT---------TCAT-CTATAGAAACTCGGCGTGGATATTGTGCGTCGTGCTCTGCGCATGCCCTGCATGAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................................................................................................GTCGTGCTCTGCGCATGCC.........	19	1	1.00	1	1	0	0	0	0	0
..................TGGACGCAGTCAGCACAC.............................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................GTGCGTCGTGCTCTGCGCATGCCC........	24	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................AACTCGGCGTGGATATTGTGCGTC.........................	24	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................ATTGTGCGTCGTGCTCTGCGCATGCC.........	26	1	1.00	1	1	0	0	0	0	0
..........CGAGAAACTGGACGCAGTCA...................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........ATCGAGAAACTGGACGCAGT.....................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......GCATCGAGAAACTGGACGCA.......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................GTGCTCTGCGCATGCCCTG......	19	1	1.00	1	1	0	0	0	0	0

droGri2

TCCGCTGCATCGAGAAACTGGATGCCGTCGCCACTCAGAATGAGGATCAGGTACCCAACTC----------------------------------------------------------------------------GCATGG-CCATTCGCC-----TAG-TCCT-CCT--TAAT------------CTCATCAATCTCGTT--------T----CAC---------TTTC-TTACAGAACCTGGGCGTGGACATTGTGCGTCGAGCACTGCGCATGCCCTGCATGAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................................................................................................................................................................................GAACCTGGGCGTGGACATT................................	19	1	1.00	1	1	0

dan_3290

scaffold_13417:910178-910238 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-12.1	-12.0	-12.0