ID:

dan_3281

 Coordinate:

scaffold_13417:770526-770676 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.7 -6.7 -6.7

Flybase annnotation

CDS [Dana\GF20382-cds]; exon [dana_GLEANR_2791:3]; intron [Dana\GF20382-in]

No Repeatable elements found

mature
  1. scaffold_12943:973293-973317 +
  2. scaffold_13099:1020983-1021007 -
  3. dan_3281  scaffold_13417:770580-770604 +
star
  1. scaffold_745:974-999 +
  2. scaffold_3825:7888-7913 +
  3. scaffold_3889:7266-7291 +
  4. scaffold_12943:973245-973270 +
  5. scaffold_13045:1354643-1354668 +
  6. scaffold_13082:1519683-1519708 +
  7. scaffold_13082:2242348-2242373 +
  8. scaffold_13099:1357691-1357716 +
  9. scaffold_13248:4452703-4452728 +
  10. scaffold_13250:1200832-1200857 +
  11. scaffold_13250:2474484-2474509 +
  12. scaffold_13260:1887897-1887922 +
  13. scaffold_13271:21982-22007 +
  14. scaffold_13271:28080-28105 +
  15. scaffold_13335:2608944-2608969 +
  16. scaffold_13337:1892893-1892918 +
  17. scaffold_13337:17041343-17041368 +
  18. scaffold_13339:118087-118112 +
  19. dan_3281  scaffold_13417:770532-770557 +
  20. scaffold_13417:3404450-3404475 +
  21. scaffold_13099:2065743-2065768 +
  22. scaffold_13266:12144889-12144914 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCTCACTAAATTTTCACCGGATCATTTCAAAATTTTGTGGACACATTTCTAAATGTATATACTTTAAGAAAATGCAAAAAAAAAAATTCGATTTTTTGAAATTTACAAGTGCGCATGCCCCCTTAATGTGCGTCTGATAATCGGGGTATATAAACCGAACCCCAATCGCAAAAGTCTCTAGTATTTTAATCGCTGTTCCAGAATGTGGCTGTCTCCGTGTAATTCCTTTGCAATTTCCGCAATATTCGGAT
********************************************************....((.(((((...((((.......(((.(((((....))))).)))........)))).....))))).))************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V039
embryo
.....................TCATTTCAAAATTTTGTGGACACATT............................................................................................................................................................................................................ 26 0 20 2.65 53 36 17 0 0
TCTCACTAAATTTTCACCGGATCAT.................................................................................................................................................................................................................................. 25 0 5 0.60 3 2 1 0 0
........................................................................................................................................................................................................GAATGTGGCTGTCTCCGTGTAATTCC......................... 26 0 2 0.50 1 0 0 1 0
........................................................................................................ACAAGTGCGCATGCCCCCTTAATGT.......................................................................................................................... 25 0 3 0.33 1 0 1 0 0
....................................................................................................................................................................................................................CTCCATGTTATTCCTTTGC.................... 19 2 3 0.33 1 0 0 0 1
..............................................................................................TTTGAAATTTACAAGTGCGCATGCCC................................................................................................................................... 26 0 20 0.30 6 5 1 0 0
.....................TCATTTCAAAATTTTGTGGACACATTTC.......................................................................................................................................................................................................... 28 0 20 0.25 5 5 0 0 0
.....................TCATTTCAAAATTTTGTGGACACAT............................................................................................................................................................................................................. 25 0 20 0.20 4 4 0 0 0
.......AAATTTTCACCGGATCATTTCAAAAT.......................................................................................................................................................................................................................... 26 0 5 0.20 1 1 0 0 0
..TCACTAAATTTTCACCGGA...................................................................................................................................................................................................................................... 19 0 5 0.20 1 1 0 0 0
TCTCACTAAATTTTCACCGGATCAC.................................................................................................................................................................................................................................. 25 1 5 0.20 1 1 0 0 0
.....................TCATTTCAAAATTTTGTGGACACATC............................................................................................................................................................................................................ 26 1 20 0.20 4 4 0 0 0
.....................TGATTTCAAAATTTTGTGGACACATT............................................................................................................................................................................................................ 26 1 20 0.20 4 4 0 0 0
................................................................................................TGAAATTTACAAGTGCGCATGCCCCCT................................................................................................................................ 27 0 20 0.20 4 1 3 0 0
TCTCACTAAATTTTCACCGGATCATT................................................................................................................................................................................................................................. 26 0 5 0.20 1 1 0 0 0
...CACTAAATTTTCACCGGATCATTTC............................................................................................................................................................................................................................... 25 0 5 0.20 1 1 0 0 0
..TGACTAAATTTTCACCGGATT.................................................................................................................................................................................................................................... 21 2 5 0.20 1 1 0 0 0
.......................................................................................................TACAAGTGCGCATGCCCCCTTAATG........................................................................................................................... 25 0 16 0.19 3 0 3 0 0
......................................................................................................TTACAAGTGCGCATGCCCCCTTAATG........................................................................................................................... 26 0 16 0.19 3 0 3 0 0
.......AAATTTTCACCGGATCATTTCAAAA........................................................................................................................................................................................................................... 25 0 6 0.17 1 1 0 0 0
......TAAATTTTCACCGGATCATTTCAAAA........................................................................................................................................................................................................................... 26 0 6 0.17 1 1 0 0 0
.............TCACCGGATCATTTCAAAATTTTGTGGA.................................................................................................................................................................................................................. 28 0 20 0.15 3 3 0 0 0
.................CGGATCATTTCAAAATTTTGTGGAC................................................................................................................................................................................................................. 25 0 20 0.10 2 2 0 0 0
..............................................................................................TTTGAAATTTACAAGTGCGCATGCCCCCT................................................................................................................................ 29 0 20 0.10 2 1 1 0 0
............................................................................................TTTGTGAAATTTACAAGTGCGCATGCC.................................................................................................................................... 27 1 20 0.10 2 2 0 0 0
........................................................ATATACTTTAAGAAAATGCAAAAAAA......................................................................................................................................................................... 26 0 20 0.10 2 1 1 0 0
.............TCACCGGATCATTTCAAAATTTTGTG.................................................................................................................................................................................................................... 26 0 20 0.10 2 0 2 0 0
.............................................................................................TTTTGAAATTTACAAGTGCGCATGCC.................................................................................................................................... 26 0 20 0.10 2 2 0 0 0
..............................................................................................TTTGAAATTTACAAGTGCGCATGCCCCC................................................................................................................................. 28 0 20 0.10 2 1 1 0 0
.....................................................................................................TTTACAAGTGCGCATGCCCCCTTAATG........................................................................................................................... 27 0 10 0.10 1 0 1 0 0
......................................................................................TTCGATTTTTTGAAATTTACAAGTGC........................................................................................................................................... 26 0 20 0.10 2 2 0 0 0
..............................................................................................TTTGAAATTTACAAGTGCGCATGCCCC.................................................................................................................................. 27 0 20 0.10 2 2 0 0 0
....................ATCTTTTCAAAATTTTGTGGACACATTT........................................................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0
......................CATTTCAAAATTTTGTGGACACATTTCT......................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0
.............TCACCGGATCATTTCAAAATTTTG...................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
..............................................................................................TTTGAAATTTCCAAGTGCGCATGCCCCC................................................................................................................................. 28 1 20 0.05 1 1 0 0 0
..............................................................................................TGTGAAATTTACAAGTGCGCATGCCCCCT................................................................................................................................ 29 1 20 0.05 1 1 0 0 0
..................................................................................................AAATTTACAAGTGCGCATGCCCCCTTA.............................................................................................................................. 27 0 20 0.05 1 0 1 0 0
...................................................................................................AATTTACAAGTGCGCATGCCCCCT................................................................................................................................ 24 0 20 0.05 1 0 1 0 0
.............................................................................................TTTTGAAATTTACAAGTGCGC......................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
...............................................................................................TTGAAATTTACAAGTGCGCATGCCCCCT................................................................................................................................ 28 0 20 0.05 1 0 1 0 0
..................................................................................................AGATTTACAAGTGCGCATGCCC................................................................................................................................... 22 1 20 0.05 1 1 0 0 0
..............................................................................................TTTGAAATTTACCAGTGCGCATGCC.................................................................................................................................... 25 1 20 0.05 1 1 0 0 0
............................AAAATTTTGTGGACACATTTCTAAATG.................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
.............................................................................................TGTTGAAATTTACAAGTGCGCATGCC.................................................................................................................................... 26 1 20 0.05 1 1 0 0 0
.......................................................................................TCGATTTTTTGAAATTTACAAGTGCGCA........................................................................................................................................ 28 0 20 0.05 1 1 0 0 0
...............................................................................................TTGTAATTTACAAGTGCGCATGCCCCCT................................................................................................................................ 28 1 20 0.05 1 1 0 0 0
............................................................................................GTTTTGAAATTTACAAGTGCGCATGCC.................................................................................................................................... 27 1 20 0.05 1 1 0 0 0
.............................................................................................TTTTGAAATTTACAAGTGCGCATGCT.................................................................................................................................... 26 1 20 0.05 1 1 0 0 0
......................CATTTCAAAATTTTGTGGACACATTTC.......................................................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0
.................CGGATCATTTCAAAATTTTGTGGACAC............................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
..................................................................................................AAATTTACAAGTGCGCATGCC.................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
......................................................................................................TTACAAGTTCGCATGCCCCCTTAAT............................................................................................................................ 25 1 20 0.05 1 0 1 0 0
..............................................................................................TGTGAAATTTACAAGTGCGCATGCCCCC................................................................................................................................. 28 1 20 0.05 1 1 0 0 0
.................CTGATCATTTCAAAATTTTGTGGA.................................................................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0
..............................................................................................TTCGAAATTTACAAGTGCGCATGCCCCC................................................................................................................................. 28 1 20 0.05 1 1 0 0 0
............................................................................................TTTTTGAAATTTACAAGTGCGCATGC..................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
...............................................................................................TTCAAATTTACAAGTGCGCATGCC.................................................................................................................................... 24 1 20 0.05 1 1 0 0 0
.................................................................................................GAAATTTACAAGTGCGCATGC..................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
...............................................................................................TTGAAATTTACAAGTGCGCATGCCCC.................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
................................................................................................TGAAATTTACAAGTGCGCATGCCCCCC................................................................................................................................ 27 1 20 0.05 1 1 0 0 0
.................................................................................................GAAATTTACAAGTGCGCATG...................................................................................................................................... 20 0 20 0.05 1 1 0 0 0
..........................TCAAAATTTTGTGGACACATTT........................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
.................................................................................................GAAATTTACAAGTGCGCATGCCCCCTTA.............................................................................................................................. 28 0 20 0.05 1 0 1 0 0
.................................................................................................GAAATTTACAAGTGCGCATGCCCCC................................................................................................................................. 25 0 20 0.05 1 1 0 0 0
...............................................................................................TTGAAATTTACAAGTGCGCATGCCCCCTT............................................................................................................................... 29 0 20 0.05 1 0 1 0 0
...........................................................................................TTTTTTGAAATTTACAAGTGCGCATGC..................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
............................................................................................TTTTTGAAATTTACAAGTGCGCATGCCCC.................................................................................................................................. 29 0 20 0.05 1 0 1 0 0
...............................................................................................TGGAAATTTACAAGTGCGCATGCCCCC................................................................................................................................. 27 1 20 0.05 1 1 0 0 0
..............................................................................................TTTGAAATTTACAAGTGCGCATG...................................................................................................................................... 23 0 20 0.05 1 1 0 0 0
................................................................................................TGATATTTACAAGTGCGCATGCCC................................................................................................................................... 24 1 20 0.05 1 1 0 0 0
..............CACCGGATCATTTCAAAATTTTGTG.................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
................................................................................................TGAAATTTACAAGTGCGCATGCCCCC................................................................................................................................. 26 0 20 0.05 1 0 1 0 0
............................................................................................TTTTTGAAATTTACAAGTGCGC......................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
......................CATTTCAAAATTTTGTGGACA................................................................................................................................................................................................................ 21 0 20 0.05 1 0 1 0 0
...................................................................................................AATTTACAAGTGCGCATGCCC................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
........................................................ATATACTTTAAGAAAATGCAAAAA........................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
..............................................................................................TTTGAAATTTACAAGCGCGCATGCCCCCT................................................................................................................................ 29 1 20 0.05 1 1 0 0 0
.....................TCATTTCAGAATTTTGTGGACACATT............................................................................................................................................................................................................ 26 1 20 0.05 1 0 1 0 0
............................................................................................TTTTTGAAATTTACAAGTGCGCATGCC.................................................................................................................................... 27 0 20 0.05 1 0 1 0 0
............................AAAATTTTGTGGACACATT............................................................................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0
............................................................................................TTTTTGAAATTTACAAGTGCGCATGCCC................................................................................................................................... 28 0 20 0.05 1 1 0 0 0
....................ATCATTTCAAAATTTTGAGGAC................................................................................................................................................................................................................. 22 1 20 0.05 1 1 0 0 0
..................................................................................................AAATTTACAAGTGCGCATGCCC................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
......................................................................................................TTACAAGTGCGCATGCCCCCTTAATT........................................................................................................................... 26 1 20 0.05 1 0 0 0 1

Anti-sense strand reads

AGAGTGATTTAAAAGTGGCCTAGTAAAGTTTTAAAACACCTGTGTAAAGATTTACATATATGAAATTCTTTTACGTTTTTTTTTTTAAGCTAAAAAACTTTAAATGTTCACGCGTACGGGGGAATTACACGCAGACTATTAGCCCCATATATTTGGCTTGGGGTTAGCGTTTTCAGAGATCATAAAATTAGCGACAAGGTCTTACACCGACAGAGGCACATTAAGGAAACGTTAAAGGCGTTATAAGCCTA
**************************************************************************************************************************....((.(((((...((((.......(((.(((((....))))).)))........)))).....))))).))******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V055
head
 V039
embryo
 V106
head
 V105
male body
............................................................................................................................................................CTTGGGGTTAGCGTTTTCA............................................................................ 19 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................GGGGCAATTACACCCAGAGTAT................................................................................................................ 22 3 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................GGGGAAATTACACCCACACTAT................................................................................................................ 22 3 2 0.50 1 0 0 1 0 0 0
.......................................................................................................................................................................................................TCTTACACCGACAGAGGCACA............................... 21 0 2 0.50 1 0 0 0 0 1 0
.....GATTTAAAAGTGGCCTAGTAAAGTTT............................................................................................................................................................................................................................ 26 0 5 0.40 2 0 0 0 2 0 0
....TGATTTAAAAGTGGCCTAGTAAAGTTT............................................................................................................................................................................................................................ 27 0 5 0.40 2 1 0 0 1 0 0
.GAGTGATTTAAAAGTGGCCTAGTAAAG............................................................................................................................................................................................................................... 27 0 5 0.20 1 0 0 0 0 0 1
AGAGTGATTTAAAAGTGGCCTAGTAAA................................................................................................................................................................................................................................ 27 0 5 0.20 1 0 1 0 0 0 0
...................................................................................TTTAAGCTAAAAAACTTTAAATGTTCACG........................................................................................................................................... 29 0 20 0.20 4 4 0 0 0 0 0
.CAGTGATTTAAAAGTGGCCTAGTAAAG............................................................................................................................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0
..AGTGATTTAAAAGTGGCCTAGTAAAGT.............................................................................................................................................................................................................................. 27 0 5 0.20 1 1 0 0 0 0 0
AGAGTGATTTAAAAGTGGTCTAGTAAAGT.............................................................................................................................................................................................................................. 29 1 5 0.20 1 1 0 0 0 0 0
....TGATTTAAAAGTGGCCTACTAAAGTTT............................................................................................................................................................................................................................ 27 1 5 0.20 1 1 0 0 0 0 0
......ATTTAAAAGTGGCCTAGTAAAGTTT............................................................................................................................................................................................................................ 25 0 6 0.17 1 0 1 0 0 0 0
...........................................................................................................................................................GCTTGGGGTTAGAGTTCT.............................................................................. 18 2 6 0.17 1 0 0 0 0 0 1
.......................................CTGTGTAAAGATTTACATATATGAAAT......................................................................................................................................................................................... 27 0 20 0.15 3 3 0 0 0 0 0
...................................................................................................................................................................................................AAGGTCTTACATCGTCAG...................................... 18 2 7 0.14 1 0 0 0 1 0 0
....................................................................................TTAAGCTAAAAAACTTTAAATGTTCACG........................................................................................................................................... 28 0 20 0.10 2 2 0 0 0 0 0
..................CCTAGTAAAGTTTTAAAACACCTGTGT.............................................................................................................................................................................................................. 27 0 20 0.10 2 2 0 0 0 0 0
...................................................TTACATATATGAAATTCTTTTACGTGT............................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................CTAAAAAACTTTAAATGTTCACGCGG........................................................................................................................................ 26 1 20 0.05 1 1 0 0 0 0 0
...............TGGCCTAGTAAAGTTTTAAAACGC.................................................................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
.......................................CTGTGTAAAGATTTACATATATGTAAT......................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
...................................................................................TTTAAGCTAAAAAACTTTAAATGTTTACG........................................................................................................................................... 29 1 20 0.05 1 1 0 0 0 0 0
......................................................................................AAGCTAAAAAACTTTAAATGTTCACG........................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................AAACTTTAAATGTTCACGCGTACGGGG.................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0
....................................................................................TTAAGCTAAAAAACTTTAAATATTCACG........................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
..............GTGGCCTAGTAAAGTTTTAAAACACC................................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
...............................................................................TTTTTTTAAGCTAAAAACCTTTAAATGT................................................................................................................................................ 28 1 20 0.05 1 1 0 0 0 0 0
...................CTAGTAAAGTTTTAAAACACCTGTGTA............................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0
.............AGTGGCCTAGTAAAGTTTTAAAACAC.................................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
......................................................................................CAGCTAAAAAACTTTAAATGTTTACG........................................................................................................................................... 26 2 20 0.05 1 1 0 0 0 0 0
...............TGGCCTAGTAAAGTTTTAAAACAACT.................................................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
......................................................................................CAGCTAAAAAACTTTAAATGTTCAGG........................................................................................................................................... 26 2 20 0.05 1 1 0 0 0 0 0
..................................................................................TTTTAAGCTAAAAAACTTTAAACGT................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................ATTGTTGGCCCCATATATTT................................................................................................. 20 3 20 0.05 1 0 0 0 1 0 0
...................................................................................TTTAAGCTAAAAAACTTTAAATGTTC.............................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13417:770476-770726 + dan_3281 TCTC--ACTAAATTT----------TCACCGGATC--ATTTC-----AAAATTTTGTGGACACATTTCTAAATGTATATACTTTAAGAAAATGCAAAAAAAAAAATTCGATTTTTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCTTAATGT-G--CGTCTGATAATCGGGGTATATAAACCGAACCCCAATCGCAAAAGTCTCTAGTATTTTAATCGCTGTTCCAGAATGTGGCTGTCTCCGTGTAATTCCTTTGCAATTTCCGCAATATTCGGAT
droBip1 scf7180000396570:631575-631818 + TATCTTTAAGAGTTT------------TTGAAATTTTTACTT-----GAAATTTTCAGGGAACATTCTTGAATAGTTACAAGTTCGAATTAAATTAAAAAAAAAAATCGATTTTTT-----AAAAC---------------------------------------------------------------------------------------------------CGAGAATGGGGGGGGTCCCCTTAAATGATTTGTAATCGCATTTATAATCATTCTGTACCAAATTCTAAGAACAAAATATTTTTTAGATTTTTTGTCAAATTTTC--------------------------------------------------------------------------------------------------------------TAGGGGATCCCCTTTAAAATTTCAAAATATGCATAG
droKik1 scf7180000300428:42146-42314 + AT--------------------------------C--GTTAT-----GAATTTTTGTGAGAGTATTCTCAACAGTATATACTTGAAGAATATGCAATAAAAAAAAGTCGATTTTTT-----TATCA---------------------------------------------------------------------------------------------------TCACAACTG--------------------------------------------------------------------------------------------------TATATAACCCCTTAAATGAGGA----------TATGCAGATTTGCACTGTATCTCAAACGAAAGGGAATTCATTTCTTTAATTTCTAT-------------------------------------------------------
droFic1 scf7180000454040:218426-218647 - CCTA--TCGAACTAT----------TATTCGGATC--TCTTC-----AAAAATTTGGGAAAATGTTCTCTAGGGGATATACTTTAGGATTCAGCAAAAAAAATTT-TCTTTTTTTT-----TAAA-------------------------------------------------------------------------------------------------------AAAAGG--------------------------------------------------------------------------------------------------TATATAACCCCTTAAGGGGTTA----------TATCCAG--TTGCAATTT---TGAAAAAATCGAAAATTTTTTTG--------CCTATTTTGAATGTATATATATTTAAGAATATTGTCTGCAAATTTCAAAGTATTC----
droEle1 scf7180000486688:11720-11919 + TGTC--TCCAAAAAT----------AATTCGAGTC----T------------TGAAAAATTATGTTTTTGAATGTCTAAACTTTCAAAATATGGAGAGAGAAAAAAAAACCTCTTTAATTTGAAGTTACCTAGGCTGTACGTTGAGTTCGCTGCCT------------------TTAATATTTTAGTATTCGCAAAAACTTGGCTGAAACCGGAGAT-------TTCCA-ACTC--------------------------------------------------------------------------------------------------CA-------------------------------------------------------------AAGTTTTTAACACTTTA-------------------------------------------------------A-------
droRho1 scf7180000777836:17353-17537 - TCTT--CAAAAGTTT------------TTAAAATC--ACT-T-----GAAATTTTTAAGGAACATTCTTGAATAGTTATAGGTTCAAATTAAATTAA---AAAAA-TCCATTTTTT-----GAAAC---CGA------------AAAACGTTGCTTTGAACCATTTTATGCCGTTTGATAGTT---------------------TAAATACGAAGCTTTCAAACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTTTAATCTCCGTTTCCAA---------------------------------------ATG-------
droBia1 scf7180000302132:152236-152367 - ACGT--CAGTTCTAA----------AGGTCCGATT--GTTTTAAAATGAA--AATAAGGAAACATTATTTAGGGAAAGTACATTGAAAAAACGCAAACAAATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAATTTTTCGACTTAATTAAGTGGATATAACCGCTTAA--------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000412433:14528-14722 + CATA--GCTACAACTTCGGTTCTAATGCTCCGATC--GTTCT-----GAATTTTTGTAAGAGTATTCTCAAAAGTGTATACTTCAAGAATATGCAATAAAAAATA-ACATTTTTTT-----ATCTA---------------------------------------------------------------------------------------------------TCACAACTG--------------------------------------------------------------------------------------------------TATATAACCCCTTAAATATACTCATAAGGTAGCTAAAGTTTGAAAATTAAACCTACCCTGTA-------------------------------------------------------------AAAATTAATAATA-------
droSim2 node_94561:245-368 + TCTT--TGTGAGTTT----------TGCTCCGATT--GACTT-----CCTATTTACAGACAACAATCTTGAGTTACTATACTTTCATAATATGCAATTAAAAAAAATCACTTTTTT-----TGAAC---------------------------------------------------------------------------------------------------CCTCAAAACCC------------------------------------------------------------------------------------------------TAC--CCCCCCCT----------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_30:71777-71911 + GCCG--AAATAATTA-CCGAAATAATCTACATTTC--GGCAT-----GAAAATTTCAGGAAATATTCGGAAGAGTGTATACTATTCGATAAAACAAAAAAAAAAA-CGATTTTTTT-----TAAAT--------------------------------------------------------------------------------------------------TTCAC-ACTG--------------------------------------------------------------------------------------------------GAAA-GCTCCCTTAACG------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chr3h_random_002:677516-677709 - TCTT--TGTGTGTTT----------TGCTCCGATT--GACTT-----CCTATTTACAGACAACAATCTTGAGTTACTAAACTTTCATAATATGCAATTAAAAAAAATCACTTTTTT-----TGAAC---------------------------------------------------------------------------------------------------CCCCAT---------------------------------------------------CCCACTTCTACTAGCTGAGTA-------------------------------------------AC---GGGTATCAAATAGTCGGG------------GAACTCGACTATAGCGTTCTCTCTTGTTTTAATCTTTTC---TAC---------------------------------------AAA-------
droWil2 scf2_1100000004943:674077-674202 + ACTT--CATAAATAA----------TCGTCGGATT--GAT-T-----GAAATTTTTAGAGTGTATACATAAATACATGTACATTACAAAAAAGGAAAAAAAAAAATTCGATTTTTT-----GAAAA---------------------------------------------------------------------------------------------------TTCTAACTA--------------------------------------------------------------------------------------------------GATGTAACCCCTTAAT-------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCTC--ACTAAATTT----------TCACCGGATC--ATTTC-----AAAATTTTGTGGACACATTTCTAAATGTATATACTTTAAGAAAATGCAAAAAAAAAAATTCGATTTTTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCTTAATGT-G--CGTCTGATAATCGGGGTATATAAACCGAACCCCAATCGCAAAAGTCTCTAGTATTTTAATCGCTGTTCCAGAATGTGGCTGTCTCCGTGTAATTCCTTTGCAATTTCCGCAATATTCGGATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................TC--ATTTC-----AAAATTTTGTGGACACATT.........................................................................................................................................................................................................................................................................................................................................................................................................................26202.655317360000
TCTC--ACTAAATTT----------TCACCGGATC--AT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.603120000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGCTGTCTCCGTGTAATTCC.........................2620.501000001
...................................................................................................................................................................................................................................ACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCTTAATGT-............................................................................................................................2530.331100000
.................................................................................................................TTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCC......................................................................................................................................26200.306150000
.................................TC--ATTTC-----AAAATTTTGTGGACACATTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................28200.255050000
.................................TC--ATTTC-----AAAATTTTGTGGACACAT..........................................................................................................................................................................................................................................................................................................................................................................................................................25200.204040000
.........AAATTT----------TCACCGGATC--ATTTC-----AAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2650.201010000
..TC--ACTAAATTT----------TCACCGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.201010000
TCTC--ACTAAATTT----------TCACCGGATC--AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.201010000
.................................TC--ATTTC-----AAAATTTTGTGGACACATC.........................................................................................................................................................................................................................................................................................................................................................................................................................26200.204040000
...................................................................................................................T-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCT...................................................................................................................................27200.204310000
TCTC--ACTAAATTT----------TCACCGGATC--ATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.201010000
...C--ACTAAATTT----------TCACCGGATC--ATTTC-----............................................................................................................................................................................................................................................................................................................................................................................................................................................2550.201010000
..................................................................................................................................................................................................................................TACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCTTAATG..............................................................................................................................25160.193300000
.................................................................................................................................................................................................................................TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCTTAATG..............................................................................................................................26160.193300000
.........AAATTT----------TCACCGGATC--ATTTC-----AAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................2560.171010000
........TAAATTT----------TCACCGGATC--ATTTC-----AAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................2660.171010000
.........................TCACCGGATC--ATTTC-----AAAATTTTGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................28200.153030000
.............................CGGATC--ATTTC-----AAAATTTTGTGGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................25200.102020000
.................................................................................................................TTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCT...................................................................................................................................29200.102110000
...........................................................................ATATACTTTAAGAAAATGCAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................26200.102110000
.........................TCACCGGATC--ATTTC-----AAAATTTTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102200000
................................................................................................................TTTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCC.......................................................................................................................................26200.102020000
.................................................................................................................TTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCC....................................................................................................................................28200.102110000
.............................................................................................................................T---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCTTAATG..............................................................................................................................27100.101100000
.........................................................................................................TTCGATTTTTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------C..............................................................................................................................................26200.102020000
.................................................................................................................TTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCC.....................................................................................................................................27200.102020000
..................................C--ATTTC-----AAAATTTTGTGGACACATTTCT......................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
.........................TCACCGGATC--ATTTC-----AAAATTTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
..........................................................................................................................AAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCTTA.................................................................................................................................27200.051100000
...........................................................................................................................AAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCT...................................................................................................................................24200.051100000
................................................................................................................TTTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGC............................................................................................................................................21200.051010000
..................................................................................................................TT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCT...................................................................................................................................28200.051100000
...............................................AAAATTTTGTGGACACATTTCTAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
..........................................................................................................TCGATTTTTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCA...........................................................................................................................................28200.051010000
................................................................................................................TTTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCT.......................................................................................................................................26200.051010000
..................................C--ATTTC-----AAAATTTTGTGGACACATTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.............................CGGATC--ATTTC-----AAAATTTTGTGGACAC............................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
..........................................................................................................................AAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCC.......................................................................................................................................21200.051010000
...............................................................................................................TTTTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGC........................................................................................................................................26200.051010000
.........................................................................................................................GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGC........................................................................................................................................21200.051010000
..................................................................................................................TT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCC.....................................................................................................................................26200.051010000
...................................................................................................................T-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCC...................................................................................................................................27200.051010000
.........................................................................................................................GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATG.........................................................................................................................................20200.051010000
........................................TC-----AAAATTTTGTGGACACATTT........................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.........................................................................................................................GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCTTA.................................................................................................................................28200.051100000
.........................................................................................................................GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCC....................................................................................................................................25200.051010000
..................................................................................................................TT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCTT..................................................................................................................................29200.051100000
..............................................................................................................TTTTTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGC........................................................................................................................................27200.051010000
...............................................................................................................TTTTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCC.....................................................................................................................................29200.051100000
.................................................................................................................TTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATG.........................................................................................................................................23200.051010000
..........................CACCGGATC--ATTTC-----AAAATTTTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
...................................................................................................................T-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCC....................................................................................................................................26200.051100000
...............................................................................................................TTTTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGC............................................................................................................................................22200.051010000
..................................C--ATTTC-----AAAATTTTGTGGACA.............................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
...........................................................................................................................AAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCC......................................................................................................................................21200.051010000
...........................................................................ATATACTTTAAGAAAATGCAAAAA........................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
...............................................................................................................TTTTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCC.......................................................................................................................................27200.051100000
...............................................AAAATTTTGTGGACACATT.........................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
...............................................................................................................TTTTT-----GAAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCC......................................................................................................................................28200.051010000
..........................................................................................................................AAAT---------------------------------------------------------------------------------------------------TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCC......................................................................................................................................22200.051010000
.................................................................................................................................................................................................................................TTACAAGTG--------------------------------------------------------------------------------------------------CGCATGCCCCCTTAATT..............................................................................................................................26200.051001000
droBip1
TATCTTTAAGAGTTT------------TTGAAATTTTTACTT-----GAAATTTTCAGGGAACATTCTTGAATAGTTACAAGTTCGAATTAAATTAAAAAAAAAAATCGATTTTTT-----AAAAC---------------------------------------------------------------------------------------------------CGAGAATGGGGGGGGTCCCCTTAAATGATTTGTAATCGCATTTATAATCATTCTGTACCAAATTCTAAGAACAAAATATTTTTTAGATTTTTTGTCAAATTTTC--------------------------------------------------------------------------------------------------------------TAGGGGATCCCCTTTAAAATTTCAAAATATGCATAGSizeHit CountTotal NormTotal
No Reads
droKik1
AT--------------------------------C--GTTAT-----GAATTTTTGTGAGAGTATTCTCAACAGTATATACTTGAAGAATATGCAATAAAAAAAAGTCGATTTTTT-----TATCA---------------------------------------------------------------------------------------------------TCACAACTG--------------------------------------------------------------------------------------------------TATATAACCCCTTAAATGAGGA----------TATGCAGATTTGCACTGTATCTCAAACGAAAGGGAATTCATTTCTTTAATTTCTAT-------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CCTA--TCGAACTAT----------TATTCGGATC--TCTTC-----AAAAATTTGGGAAAATGTTCTCTAGGGGATATACTTTAGGATTCAGCAAAAAAAATTT-TCTTTTTTTT-----TAAA-------------------------------------------------------------------------------------------------------AAAAGG--------------------------------------------------------------------------------------------------TATATAACCCCTTAAGGGGTTA----------TATCCAG--TTGCAATTT---TGAAAAAATCGAAAATTTTTTTG--------CCTATTTTGAATGTATATATATTTAAGAATATTGTCTGCAAATTTCAAAGTATTC----SizeHit CountTotal NormTotal
No Reads
droEle1
TGTC--TCCAAAAAT----------AATTCGAGTC----T------------TGAAAAATTATGTTTTTGAATGTCTAAACTTTCAAAATATGGAGAGAGAAAAAAAAACCTCTTTAATTTGAAGTTACCTAGGCTGTACGTTGAGTTCGCTGCCT------------------TTAATATTTTAGTATTCGCAAAAACTTGGCTGAAACCGGAGAT-------TTCCA-ACTC--------------------------------------------------------------------------------------------------CA-------------------------------------------------------------AAGTTTTTAACACTTTA-------------------------------------------------------A-------SizeHit CountTotal NormTotal
No Reads
droRho1
TCTT--CAAAAGTTT------------TTAAAATC--ACT-T-----GAAATTTTTAAGGAACATTCTTGAATAGTTATAGGTTCAAATTAAATTAA---AAAAA-TCCATTTTTT-----GAAAC---CGA------------AAAACGTTGCTTTGAACCATTTTATGCCGTTTGATAGTT---------------------TAAATACGAAGCTTTCAAACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTTTAATCTCCGTTTCCAA---------------------------------------ATG-------SizeHit CountTotal NormTotal
No Reads
droBia1
ACGT--CAGTTCTAA----------AGGTCCGATT--GTTTTAAAATGAA--AATAAGGAAACATTATTTAGGGAAAGTACATTGAAAAAACGCAAACAAATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAATTTTTCGACTTAATTAAGTGGATATAACCGCTTAA--------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CATA--GCTACAACTTCGGTTCTAATGCTCCGATC--GTTCT-----GAATTTTTGTAAGAGTATTCTCAAAAGTGTATACTTCAAGAATATGCAATAAAAAATA-ACATTTTTTT-----ATCTA---------------------------------------------------------------------------------------------------TCACAACTG--------------------------------------------------------------------------------------------------TATATAACCCCTTAAATATACTCATAAGGTAGCTAAAGTTTGAAAATTAAACCTACCCTGTA-------------------------------------------------------------AAAATTAATAATA-------SizeHit CountTotal NormTotal
No Reads
droSim2
TCTT--TGTGAGTTT----------TGCTCCGATT--GACTT-----CCTATTTACAGACAACAATCTTGAGTTACTATACTTTCATAATATGCAATTAAAAAAAATCACTTTTTT-----TGAAC---------------------------------------------------------------------------------------------------CCTCAAAACCC------------------------------------------------------------------------------------------------TAC--CCCCCCCT----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GCCG--AAATAATTA-CCGAAATAATCTACATTTC--GGCAT-----GAAAATTTCAGGAAATATTCGGAAGAGTGTATACTATTCGATAAAACAAAAAAAAAAA-CGATTTTTTT-----TAAAT--------------------------------------------------------------------------------------------------TTCAC-ACTG--------------------------------------------------------------------------------------------------GAAA-GCTCCCTTAACG------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TCTT--TGTGTGTTT----------TGCTCCGATT--GACTT-----CCTATTTACAGACAACAATCTTGAGTTACTAAACTTTCATAATATGCAATTAAAAAAAATCACTTTTTT-----TGAAC---------------------------------------------------------------------------------------------------CCCCAT---------------------------------------------------CCCACTTCTACTAGCTGAGTA-------------------------------------------AC---GGGTATCAAATAGTCGGG------------GAACTCGACTATAGCGTTCTCTCTTGTTTTAATCTTTTC---TAC---------------------------------------AAA-------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................TAAAAAAAATCACTTTTTT-----TGAAC---------------------------------------------------------------------------------------------------CC........................................................................................................................................................................................................................................................26202.0541004100000000
.................................................................................................TAAAAAAAATCACTTTTTT-----TGAAC---------------------------------------------------------------------------------------------------CCC.......................................................................................................................................................................................................................................................2722.00400400000000
......................................................................................................................................................................................................................................................................................................................................................................................................TATAGCGTTCTCTCTTGTTTTAATCT...........................................................26100.80807100000000
......................................................................................................................................................................................................................................................................................................................................................................................................TATAGCGTTCTCTCTTGTTTTAATCTT..........................................................2780.75606000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GACTATAGCGTTCTCTCTTGTTTTAATCT...........................................................29100.70702500000000
................................................................................................TTAAAAAAAATCACTTTTTT-----TGAAC---------------------------------------------------------------------------------------------------CC........................................................................................................................................................................................................................................................27200.501002800000000
...................................................................................................................................................................................................................................................................................................................................................................................................GACTATAGCGTTCTCTCTTGTTTTAATC............................................................28130.38500310010000
......................................................................................................................................................................................................................................................................................................................................................................................................TATAGCGTTCTCTCTTGTTTTAATC............................................................25190.32602400000000
........................................................................................................................................................................................................................................................................................................................................................................................................TAGCGTTCTCTCTTGTTTTAATCT...........................................................24100.30302100000000
........................................TT-----CCTATTTACAGACAACAATCTTGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................28200.20400400000000
.........................................T-----CCTATTTACAGACAACAATCTTGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................27200.15300300000000
...................................................................................................................................................................................................................................................................................................................................................................................................GACTATAGCGTTCTCTCTTGTTTTAA..............................................................26200.15303000000000
....................................................................................................................................................................................................................................................................................................................................................................................................ACTATAGCGTTCTCTCTTGTTTTAATC............................................................27170.12201000010000
.........................................T-----CCTATTTACAGACAACAATCTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................26200.10201100000000
.........................................T-----CCTATTTACAGACAACAATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................22200.10202000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTCTCTCTTGTTTTAATCT...........................................................23100.10100100000000
............TTT----------TGCTCCGATT--GACTT-----CCTATC......................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10200200000000
........................................TT-----CCTATTTACAGACAACAATCTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................27200.10202000000000
..................................................................................................AAAAAAAATCACTTTTTT-----TGAAC---------------------------------------------------------------------------------------------------CC........................................................................................................................................................................................................................................................25200.10201100000000
.....................................GACTT-----CCTATTTACAGACAACAATC........................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
..................................T--GACTT-----CCTATTTACAGACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
...............................................................................................ATTAAAAAAAATCACTTTTTT-----TGAAC---------------------------------------------------------------------------------------------------CC........................................................................................................................................................................................................................................................28200.05100100000000
.......................................CTT-----CCTATTTACAGACAACAATCTTGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................29200.05100100000000
................................................................................CTTTCATAATATGCAATTAA.......................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
........................................TT-----CCTATTTACAGACAACAATCTTGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100000000
...........................................................................................TGCAATTAAAAAAAATCACTTTTTT-----..................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
....................................................................................................................................................................................................................................................................................................CTAGCTGAGTA-------------------------------------------AC---GGGTATCAAATAGTC.............................................................................................................28200.05100000010000
......................................................................................TAATATGCAATTAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................18200.05101000000000
...............................................CCTATTTACAGACAACAATC........................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
..............................................................................................AATTAAAAAAAATCACTTTTTT-----TGAAC---------------------------------------------------------------------------------------------------CC........................................................................................................................................................................................................................................................29200.05101000000000
....................................................TTACAGACAACAATCTTGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
.................................................................................................TAAAAAAAATCACTTTTTT-----..................................................................................................................................................................................................................................................................................................................................................................19200.05100100000000
.........................................T-----CCTATTTACAGACAACAATCTTGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000000000
...........GTTT----------TGCTCCGATT--GACTT-----C...........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100000000
.................................................................................................TAAAAAAAATCACTTTTTT-----TGAAC---------------------------------------------------------------------------------------------------C.........................................................................................................................................................................................................................................................25200.05101000000000
..................................T--GACTT-----CCTATTTACAGACAACAATCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................29200.05101000000000
...............................................CCTATTTACAGACAACAATCTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
.........................................T-----CCTATTTACAGACAACAATCTTGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
..................................T--GACTT-----CCTATTTACAGACAACAATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
.........................................................................................................ATCACTTTTTT-----TGAAC---------------------------------------------------------------------------------------------------CC........................................................................................................................................................................................................................................................18200.05101000000000
............TTT----------TGCTCCGATT--GACTT-----CCTATT......................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
droWil2
ACTT--CATAAATAA----------TCGTCGGATT--GAT-T-----GAAATTTTTAGAGTGTATACATAAATACATGTACATTACAAAAAAGGAAAAAAAAAAATTCGATTTTTT-----GAAAA---------------------------------------------------------------------------------------------------TTCTAACTA--------------------------------------------------------------------------------------------------GATGTAACCCCTTAAT-------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................AAA---------------------------------------------------------------------------------------------------TTCTAACTA--------------------------------------------------------------------------------------------------GATGTAACC......................................................................................................................................21120.08101000
.......................................................................................AAAAAGGAAAAAAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
......................................................................................AAAAAAGGAAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................18200.05100010

Generated: 05/18/2015 at 06:55 AM