ID:

dan_3272

 Coordinate:

scaffold_13417:537349-537499 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.8 -10.7 -10.7

Flybase annnotation

exon [dana_GLEANR_2777:4]; CDS [Dana\GF20367-cds]; intron [Dana\GF20367-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCTGGCCAGAGAGGGAGAATGGGGGGCCTCTTAACTGTGACTGTTCCTCAATGGCTTTATCTAATCAGTTTTGGAGGGGAATCGGGCGAGCTGCAGTATCGTCCCAGCCATGGGCGTTCAGTCTTGCCCAGAATTTTGTGCTGAGCGGTTCGATTATTTTTTGGTTTTCCGGCGCAAGGAATGAGTTTGTTGCGAACGAAGCACCGTCCTGGTGGCGGGGGGGAGGAGGAGTGGCCAGCTGGCGGCCGGGG
**********************************************************************************************************************************...((((((((((......((((.......)))).....))))))))))...........************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M044
female body
 M058
embryo
 V055
head
 V106
head
 V039
embryo
..................................................................................................................................GAATTTTGTGCTGAGCGGTT..................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0
....................................................................................................................................ATTTTGTGCTGAGCGGTTC.................................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0
...................................................................................................................................................................GTTTTCCGGCGCAAGGAATGAGTTTGT............................................................. 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................AAGGAATGAGTTTGTTGCGAACGA.................................................... 24 0 1 1.00 1 0 0 1 0 0 0
........................................................................................................................................................................................GTTTGTTGCGAACGAAGCACCGT............................................ 23 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................GGAGGAGGAGTGGCCAGCTGGCGGCC.... 26 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................AGGAGGAGTGGCCAGCTGGC........ 20 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................TGCGAACGAAGCACCGTCCTGGT...................................... 23 0 1 1.00 1 0 1 0 0 0 0
................................................................................ATCGGCCAAGCTGCAGCATCGT..................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0
.............................................................................................................................................................................GCAAGGAATGAGTTTGTTGC.......................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................TTTGGTTTTCCGGCGCAAGGA....................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................GTCCTGGTGGCGGGGGGGA........................... 19 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................AATGAGTTTGTTGCGAACGAAGCAC............................................... 25 0 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................................GGTTCGATTATTTTTTGGT...................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................AATTTTGTGCTGAGCGGTT..................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................ATTTTGTGCTGAGCGGTTCGATTAT.............................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................ATTTTGTGCTGAGCGGTTCG................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................TTTTTGGTTTTCCGGCGCAAGG........................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................GAATTTTGTGCTGAGCGGT...................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................ATTTTTTGGTTTTCCGGCGCAAGGA....................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................................................GGAGGAGGAGTGGCCAGCTGGG........ 22 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................GTTTTCCGGCGCAAGGAATGA................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................AATTTCCTGCTGAGCGGTTC.................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 1
.................................................................................................................................................................TGGTTTTCCGGCGCAAGG........................................................................ 18 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................CGGGGGGGAGGAGGAGTG.................. 18 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................AGAATTTTGTGCTGAGCGG....................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
....................................................................................................................................................................................ATGAGTTTGTTGCGAACGAAGCACC.............................................. 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................TTTTTGGTTTTCCGGCGCAAG......................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................ATTTTGTGCTGAGCGGTTCGATTA............................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................GGGGGGAGGAGGAGTGGCCATCTGGC........ 26 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................TGTCCGGCGCAAGGAATGAGTTTGTTGC.......................................................... 28 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................................................ATTTTGTGCTAAGCGGTTC.................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..TGGCTTGAGAGGGAGTATGGGG................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0
...............................................................................................................................................................................................................................AGGAGGAGTGGCTATCTGGCT....... 21 3 2 0.50 1 0 0 0 1 0 0
..........................................................................AGTGGAATCGCGCGAGCTG.............................................................................................................................................................. 19 2 2 0.50 1 0 1 0 0 0 0
........................................................................................................CAGCCATGGGCATTCGGTC................................................................................................................................ 19 2 3 0.33 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................AGGAGGAGTGGTTAGCTGG......... 19 2 4 0.25 1 0 0 0 1 0 0
..............................................................AATTAGTTTGGGTGGGGAATC........................................................................................................................................................................ 21 3 6 0.17 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................AGGCGGAGTGGTTAGCTGGC........ 20 3 6 0.17 1 0 0 0 1 0 0
........................................................................................................................................................................................................................GGGGGGGTGAAGGAGTGGGCAG............. 22 3 8 0.13 1 0 0 0 1 0 0
..........................CCTCTTAAGTGTGACGGGT.............................................................................................................................................................................................................. 19 3 8 0.13 1 0 0 0 1 0 0
.........AGAGGCAGAATGGGGGCC................................................................................................................................................................................................................................ 18 2 9 0.11 1 0 0 0 1 0 0
...........................................................................................................................................................TTTTTTTGGTTTTCCGGC.............................................................................. 18 1 10 0.10 1 0 0 0 0 1 0
..............................................................................................................................................................................CAAGGAATGGGTCTGTTCC.......................................................... 19 3 20 0.10 2 0 2 0 0 0 0
...............................................................................................................................................................................................................................AGGTGGAGTGGCCAGCAGG......... 19 2 10 0.10 1 0 0 0 1 0 0
..................................................................................................................................................................................................AACCAAGCACCGTGCCGGT...................................... 19 3 11 0.09 1 0 0 0 0 0 1
.................................................................................................................................................CGGTTGAATTATTTTGTGGTT..................................................................................... 21 3 18 0.06 1 0 0 0 1 0 0
...............................................................................................................................................................................................................................AGGCGGTGTGGCTAGCTGGC........ 20 3 20 0.05 1 0 0 0 1 0 0
........TAGAGGGAGAATGGGGGTA................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 1 0 0
...............................................................................................................................................................................................................................AGCAGGTGTGGCTAGCTGG......... 19 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

AGACCGGTCTCTCCCTCTTACCCCCCGGAGAATTGACACTGACAAGGAGTTACCGAAATAGATTAGTCAAAACCTCCCCTTAGCCCGCTCGACGTCATAGCAGGGTCGGTACCCGCAAGTCAGAACGGGTCTTAAAACACGACTCGCCAAGCTAATAAAAAACCAAAAGGCCGCGTTCCTTACTCAAACAACGCTTGCTTCGTGGCAGGACCACCGCCCCCCCTCCTCCTCACCGGTCGACCGCCGGCCCC
*************************************************************...((((((((((......((((.......)))).....))))))))))...........********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 V055
head
 M058
embryo
 V039
embryo
................................................................................TAGCCGGTTCGACGTCGTAG....................................................................................................................................................... 20 3 15 2.53 38 38 0 0 0
...............................................................................TTAGCCGGTTCGACGTCGTAG....................................................................................................................................................... 21 3 7 1.43 10 9 0 1 0
....................................................................................................................................TGAATCACGACTCGCCAA..................................................................................................... 18 2 2 1.00 2 0 2 0 0
................................................................................TAGCCGGTTCGACGTCGTAGC...................................................................................................................................................... 21 3 2 1.00 2 2 0 0 0
..............................................................................CTTAGCCGGTTCGACGTCGTAG....................................................................................................................................................... 22 3 4 1.00 4 3 0 1 0
............CCCTCTTATCCCCCGGTGCA........................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 1
......................................................................................................................................AAACACCACACGCCAAGC................................................................................................... 18 2 9 0.11 1 0 0 1 0
.................................................................................................................................................................................CCTTCCTCAAACTAAGCTTG...................................................... 20 3 18 0.06 1 1 0 0 0
.................................................................................................................................................................................................................ACCACCGCCCCCCCTACTAA...................... 20 3 19 0.05 1 0 0 1 0
....................................................................................................................................CAAAACACCACACGCCAAGC................................................................................................... 20 3 19 0.05 1 0 0 1 0
.........................................................................................................................................................AAAAAAAAACCAAAAGGC................................................................................ 18 1 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13417:537299-537549 + dan_3272 TC--------TGGC-CAGAGAGGGAGAATGGGG------------------------------------------------------------------------------GGCCTCTTA--ACTGTGACTGTTCCTCAATGGC-TTTATCTAATCAGTTTTGGAGGG--GAATCGGG--------------C-------GA------------GCTGCAGTATCGT--------CCCAGCCATGG-------------------------------------------GCGTTCAGTCTTGCCCAGAATTTTGTGCTGAGCGGTTCGATTATTTTT-----TGGTTTTCCGG--CGCAAG----GAATGA---GTTTGTTGCGAACGAAGCACCGTCCTGGTGG---CGGGGGGGAGGAGGAGTGG-------------C--CAGCTG---GCG-GCCGGG---G
droBip1 scf7180000396362:594234-594484 - TCG--------GCC-AAGAGAGGG------------------------------------------------------------------GTGGGGG-------------GGGCCTGTTA--ACTGTGACTGTTCCTCAATGGC-TTTATCTAATCAGT--TGGAG-G--GAATCGGG--------------C-------GA------------GTTGCAGTAT--------CGTCCCAGCCGGTG-------------------------------------------GCGTTCAGTCTTGCCCAGAATTTTCTGTTGAGCGGTTCGATTATTTTT-TGTTTGGTTTTCCGGCGGCCG------GAATGA---GTTTGTTGCGAACGAAGAACCGTCCAGGAGG---CGGGGGCGAGGAGGAGTGG-------------C--CAGCAG---GCGGGGCCAG----
droKik1 scf7180000302610:1507865-1508110 - GAGGGTGGGGTG----------------TTGTT------------------------------------------------GTTGT----TTTGGTT-------------TTTTTTTTTTGAGTAGTGACTACTCCTCAATGGC-TTTATCTAATCAGA--------G---CAACGAC--------------G-------G-----------------AGCAACAGAG-CAACTGCGCCGCCCAGA----------GTCG-----------------ATAGATGGATGGGCGTCCAGTCTTGGCAATAGCTCGCTGTGGATCGCATCGCA----A-----------ATTACG---GCCGGAATAGAAATGA---GTTTGCTGAGAGTGAAAAACAGAGAG-GGGG---CGGTGG---------------------------C-CAATGATGG----GTCAGG----
droFic1 scf7180000454072:1407979-1408221 - GG--------TGGCCG----------AGTGGGTATATGT------------------------------------------AT-G-----TTTTGAG-------------TTGGCTGTTA----GGTGACTGCTCCTCAATGGC-TTTATCTAATCGGC--------G--GCGCCGAG--------------C-------GAT-------GAACGCTGAACGATGAACCTAACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAACGCGCTGTGGAGCACATCGCC----C-------------TGCG---GCCGGA----ACATGA---GTTTGTTGCGTGTGAGGAACGGAGGAGGAGG---AGGAGT-----------GGGAAAAGGGGGGGA-CG--GGG----------AGGG----
droEle1 scf7180000490141:662555-662795 + TC--------TG--------------ACTG-GTATATGT----------------------------------------GTAT-T--ATTTTTCGAG-------------CTGACTCTTC----TGTGACTGCTCCTCAATGGC-TTTATCTAATCGGA--------G--GCGTCGGC--------------C-------GATGAACGGTGAACGGTGAACGATGAACCATACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGCCCGCTGGGAAACAGATCGCA----T-------------TTTGGGGGCCGGA----AAATGA---GTTTGCTGCGCGTGAAGAACGGTGGGGGAGG---AGA------------------------------CG--GGGAGGG----GTCAGG----
droRho1 scf7180000778072:144407-144626 + GG--------TG--------------G----GTATAC--------------------------------------------AC-ATTTGTGTTCGAG-------------TTGACTGTTC----TGTGACTGCTCCTCAATGGC-TTTATCTAATCGGA--------G--GCGTCGGC--------------C-------G--------------ATGAGCGAGTAACCAAACTGCGCCACCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAACCCGCTGGGGAATAGATCGCA----T------------TTGGG---GCCGGA----GAATGA---GTTTGCTGCGCGTGAAGAACGGAGAAGTGGG---TGG------------------------------CG--GGGAGGG----GTCAAG----
droBia1 scf7180000302421:714434-714661 + GG--------TG--------------GTCGGGC------------------------------------------------AC-AT----TTTCGAG-------------TTGACTGTTC----TGCGACTACTCCTCAATGGC-TTTATCTAATCGGC--------G--GCGTCGGG--------------C-------GGT-------GAGCGATGAGCGGTGAACCCAACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGCTCGTTGCGGAATAGATCGCA----C-------------CACG---GCCGGA----AAATGA---GTTTGCTGCGGGTGAAGAACGGCGGAGCTGG---CGGAGCAGG------------------------GG--GCGAGGG----GTCGGG----
droTak1 scf7180000415769:477609-477857 - GG--------TG--------------GTTGGGC------------------------------------------------AT-AT--TTTTTCGAGTTGAGTTGACTGGCTGACTGTTC----AGTGACTACTCCTCAATGGC-TTTATCTAATCGGC--------A--CCGTCGGC--------------C-------GAT-------GAACGGTGAACGATGAACCCAGCTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGAAGAGAATTCGCTGGGGAATAGATCGCA----T-------------TACG---GCCGGA----AAATGA---GTTTGTTGCGGGTGAAAAACGGGAGAGGAGG---CGGAGGAGG-----------GGAAGG-------CG--GGGAGGG----GTCAGG----
droEug1 scf7180000409033:278467-278687 + AAG-GTGGGGTT--------------ACTGGGT------------------------------------------------AT-T-----TTTCGAG-------------TTGACTGTTC----TGTGACTACTCCTCAATGGC-TTTATCTAATCAGA--------G--GCGTCGGC--------------C-------G--------------ATGAGCGATGAACCAAACTGCGCCACCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAACTCTCTAGAGAGTAGATCACA----C-------------TGTG---AACGGA----AAATGA---GTTTGCTGCGCGTAAAAAAAGA-GAAGGAGT---TGG------------------------------TG--GGGAGGG----ATCAGA---G
dm3 chrX:5956984-5957211 + CAG-GTGGGGTG--------------AATGGGT------------------------------------------------AT-AT----TTTGGGG-------------CTGACTGTTCAGTCAGTGACTACCCCTCAATGGC-CTTATCTAATCGAC--------GAGACGTCGGC--------------C-------G--------------ATGAACGATGAACCAAACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGCTCGCTGGCGGATAGATCGCT----T-------------TACG---GCCGGG----AAATGA---GTTTGCTGCGCGTGAAAAACGGTGGATCGGG---TGG------------------------------CG--GGGAGGG----GTCGGG----
droSim2 x:5592839-5593062 + CAG-GTGGGGTG--------------AATGGGT------------------------------------------------AT-AT----TTTGGGG-------------CTGACTGTTC----AGTGACTACCCCTCAATGGC-CTTATCTAATCGAC--------GAGACGTCGGC--------------C-------G--------------ATGAACGATGAACCAAACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGCTCGCTGGCGGATAGATCGCT----T-------------TACG---GCCGGG----AAATGA---GTTTGCTGCGCGTGAAAAACGGTGGATCGGG---TGG------------------------------CG--GGGAGGG----GTCAGG----
droSec2 scaffold_4:808212-808438 - CAG-GTGGGGTG--------------AATGGGT------------------------------------------------AT-AT----TTTGGGC-------------CTGACTGTTC----AGTGACTACCCCTCAATGGC-CTTATCTAATCGAC--------GAGACGTCGGC--------------C-------G--------------ATGAACGATGAACCAAACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGCTCGCTGGCGGATAGATCGCT----T-------------TACG---GCCGGG----AAATGA---GTTTGCTGCGCGTGAAAAACGGTGGATCGGG---TGGTGG---------------------------GG--GTGAGGG----GTCAGG----
droYak3 X:14815933-14816183 + GT----GGGGTG--------------AATGGGT------------------------------------------------AT-AT----TTTGGAG-------------CTGACTGTTC----AGTGACTACCCCTCAATGGC-TTTATCTAATCGAC--------GAGTCGTC--CCGTCGTCCGTCGGCC-------GCT-------GAACGATGAACGATGAACCAAACTGCGTCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGTTCGCTGGCGGATAGATCACA----T-------------TACG---GCCGGA--GGAAATGA---GTTTGCTGCGCGTGAAAAACGGTGGAGCGGTTGGCGGTGGTGG------------------------CG--GGGAGGG----ATCAGG----
droEre2 scaffold_4690:3291724-3291972 + TG--------TG--------------AATGGGT------------------------------------------------GT-AT----TTTGGAG-------------CTGACTGTTC----AGTGACTACCCCTCAATGGC-TTTATCTAATCGAC--------GAGACGCCGACCGTAGAA-------CGTTGAACGGTGAACGGTGAACGATGAACGATGAACCAAACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGTGCGCTGGTGGAAAGATCACA----T-------------TACG---GCCGGA----AAATGA---GTTTGCTGCGCGTGAAAAGCGGTGGAGCGGG---TGG------------------------------CG--GGGAGGG----GTCAGGTGGC
dp5 XL_group1e:5418749-5419038 - TG--------TG--------------C-AGAGC-----------AAAGTTAGGGGACGGGGCGGGGGAGTGGCGCGGGGCAATGAT----TGTGATT-------------CTGATTGTG-----AGT-ACTCCTCCTCAATGGT-TTTATCTAATCGGG--------G-GGCGCCGAC-----------------------------------------GCGATGAG-CGAACTGCGTCGCCAAAGAGCGCCCAGAGTCAGAGCCAGGTCGGGAGGCATCGGACAGCGGGCGCCCAGTCTTGCTGCCAGCTAGCAGCCGAACAGATTG-A----T-------------TGTG---GCCCAAAGAGAAATGAGTAGTCTGCTACGTGTGAAGAACGGAGCG-GGGC---AAG-----------------------------------CGG---AGGGCAGCAA----
droPer2 scaffold_21:330205-330322 - GCGGGTACCGAG--------------AGAGAGT--GTGCAGAGCAGAGTTAGGGGACGGGGCGGGGCAGTGGCGCGGGGCAATGAT----TGTGATT-------------CTGATTGTG-----AGT-ACTCCTCCTCAATGGT-TTTATCTAATCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004963:1847374-1847558 - T----------------------------------------------------------------------------------------------------------------------------------ACTCCTCAATGGCCCTTATCTAATCACA--------G-TACAGCGGG--------------C-------G---AATTGTGT---GCGACCGACAAGCCGAG-------------A----------GTGT-----------------GTTGA---GT-GGCGTCCAGTCTTGCTAGCAGCCTGCCTTTGAACAGATTGATTTGATTTGGGTGTGAACTCACG---GG--GAAACGTTATGA---GTTTGCTGCGTACGAAGAATGGGCAT-----------------------------------------------------------GAG----
droVir3 scaffold_12928:620005-620061 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGA---GTTTGCTACGTCCCAAAAATGTGGGCGGCAA---CAG------------------------------CA--ATGAGGGGCGTGCCAGC----
droMoj3 scaffold_6328:1579895-1579959 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGA---GTTTGCTACGTACCAAAAAAGGGGGCGGCAG---CAGCAGC----------GG-------------C--G-ACAGTGGGCGTGCCAGC---G
droGri2 scaffold_14853:7860435-7860497 + G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGA---GTTTGCTACGTGCCAAAAATGGTGGCGCTGC---CGGCGGCA-----------------------------ACGATGGGCGTGCCAGC----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TC--------TGGC-CAGAGAGGGAGAATGGGG------------------------------------------------------------------------------GGCCTCTTA--ACTGTGACTGTTCCTCAATGGC-TTTATCTAATCAGTTTTGGAGGG--GAATCGGG--------------C-------GA------------GCTGCAGTATCGT--------CCCAGCCATGG-------------------------------------------GCGTTCAGTCTTGCCCAGAATTTTGTGCTGAGCGGTTCGATTATTTTT-----TGGTTTTCCGG--CGCAAG----GAATGA---GTTTGTTGCGAACGAAGCACCGTCCTGGTGG---CGGGGGGGAGGAGGAGTGG-------------C--CAGCTG---GCG-GCCGGG---GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................GAATTTTGTGCTGAGCGGTT............................................................................................................................................2012.002000020
....................................................................................................................................................................................................................................................................................................................ATTTTGTGCTGAGCGGTTC...........................................................................................................................................1912.002200000
........................................................................................................................................................................................................................................................................................................................................................GTTTTCCGG--CGCAAG----GAATGA---GTTTGT......................................................................................2711.001000010
......................................................................................................................................................................................................................................................................................................................................................................AAG----GAATGA---GTTTGTTGCGAACGA.............................................................................2411.001010000
......................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTGCGAACGAAGCACCGT.....................................................................2311.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGGAGTGG-------------C--CAGCTG---GCG-GCC.......2611.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAGTGG-------------C--CAGCTG---GC............2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................TGCGAACGAAGCACCGTCCTGGT...............................................................2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................GCAAG----GAATGA---GTTTGTTGC...................................................................................2011.001000010
...............................................................................................................................................................................................................................................................................................................................................TT-----TGGTTTTCCGG--CGCAAG----GA...................................................................................................2111.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGGTGG---CGGGGGGGA.................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................AATGA---GTTTGTTGCGAACGAAGCAC........................................................................2511.001010000
..................................................................................................................................................................................................................................................................................................................................GGTTCGATTATTTTT-----TGGT........................................................................................................................1911.001000010
...................................................................................................................................................................................................................................................................................................................AATTTTGTGCTGAGCGGTT............................................................................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................................ATTTTGTGCTGAGCGGTTCGATTAT.....................................................................................................................................2511.001000010
....................................................................................................................................................................................................................................................................................................................ATTTTGTGCTGAGCGGTTCG..........................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................TTTT-----TGGTTTTCCGG--CGCAAG----G....................................................................................................2211.001000010
..................................................................................................................................................................................................................................................................................................................GAATTTTGTGCTGAGCGGT.............................................................................................................................................1911.001000010
...........................................................................................................................................................................................................................................................................................................................................ATTTTT-----TGGTTTTCCGG--CGCAAG----GA...................................................................................................2511.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGGAGTGG-------------C--CAGCTG---GG............2211.001100000
........................................................................................................................................................................................................................................................................................................................................................GTTTTCCGG--CGCAAG----GAATGA---............................................................................................2111.001000010
......................................................................................................................................................................................................................................................................................................................................................TGGTTTTCCGG--CGCAAG----G....................................................................................................1811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................CGGGGGGGAGGAGGAGTG........................................1811.001000010
.................................................................................................................................................................................................................................................................................................................AGAATTTTGTGCTGAGCGG..............................................................................................................................................1911.001010000
...............................................................................................................................................................................................................................................................................................................................................................................ATGA---GTTTGTTGCGAACGAAGCACC.......................................................................2511.001000010
.............................................................................................................................................................................................................................................................................................................................................TTTT-----TGGTTTTCCGG--CGCAAG----.....................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................ATTTTGTGCTGAGCGGTTCGATTA......................................................................................................................................2411.001100000
droBip1
TCG--------GCC-AAGAGAGGG------------------------------------------------------------------GTGGGGG-------------GGGCCTGTTA--ACTGTGACTGTTCCTCAATGGC-TTTATCTAATCAGT--TGGAG-G--GAATCGGG--------------C-------GA------------GTTGCAGTAT--------CGTCCCAGCCGGTG-------------------------------------------GCGTTCAGTCTTGCCCAGAATTTTCTGTTGAGCGGTTCGATTATTTTT-TGTTTGGTTTTCCGGCGGCCG------GAATGA---GTTTGTTGCGAACGAAGAACCGTCCAGGAGG---CGGGGGCGAGGAGGAGTGG-------------C--CAGCAG---GCGGGGCCAG----SizeHit CountTotal NormTotal
No Reads
droKik1
GAGGGTGGGGTG----------------TTGTT------------------------------------------------GTTGT----TTTGGTT-------------TTTTTTTTTTGAGTAGTGACTACTCCTCAATGGC-TTTATCTAATCAGA--------G---CAACGAC--------------G-------G-----------------AGCAACAGAG-CAACTGCGCCGCCCAGA----------GTCG-----------------ATAGATGGATGGGCGTCCAGTCTTGGCAATAGCTCGCTGTGGATCGCATCGCA----A-----------ATTACG---GCCGGAATAGAAATGA---GTTTGCTGAGAGTGAAAAACAGAGAG-GGGG---CGGTGG---------------------------C-CAATGATGG----GTCAGG----SizeHit CountTotal NormTotal
No Reads
droFic1
GG--------TGGCCG----------AGTGGGTATATGT------------------------------------------AT-G-----TTTTGAG-------------TTGGCTGTTA----GGTGACTGCTCCTCAATGGC-TTTATCTAATCGGC--------G--GCGCCGAG--------------C-------GAT-------GAACGCTGAACGATGAACCTAACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAACGCGCTGTGGAGCACATCGCC----C-------------TGCG---GCCGGA----ACATGA---GTTTGTTGCGTGTGAGGAACGGAGGAGGAGG---AGGAGT-----------GGGAAAAGGGGGGGA-CG--GGG----------AGGG----SizeHit CountTotal NormTotal
No Reads
droEle1
TC--------TG--------------ACTG-GTATATGT----------------------------------------GTAT-T--ATTTTTCGAG-------------CTGACTCTTC----TGTGACTGCTCCTCAATGGC-TTTATCTAATCGGA--------G--GCGTCGGC--------------C-------GATGAACGGTGAACGGTGAACGATGAACCATACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGCCCGCTGGGAAACAGATCGCA----T-------------TTTGGGGGCCGGA----AAATGA---GTTTGCTGCGCGTGAAGAACGGTGGGGGAGG---AGA------------------------------CG--GGGAGGG----GTCAGG----SizeHit CountTotal NormTotal
No Reads
droRho1
GG--------TG--------------G----GTATAC--------------------------------------------AC-ATTTGTGTTCGAG-------------TTGACTGTTC----TGTGACTGCTCCTCAATGGC-TTTATCTAATCGGA--------G--GCGTCGGC--------------C-------G--------------ATGAGCGAGTAACCAAACTGCGCCACCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAACCCGCTGGGGAATAGATCGCA----T------------TTGGG---GCCGGA----GAATGA---GTTTGCTGCGCGTGAAGAACGGAGAAGTGGG---TGG------------------------------CG--GGGAGGG----GTCAAG----SizeHit CountTotal NormTotal
No Reads
droBia1
GG--------TG--------------GTCGGGC------------------------------------------------AC-AT----TTTCGAG-------------TTGACTGTTC----TGCGACTACTCCTCAATGGC-TTTATCTAATCGGC--------G--GCGTCGGG--------------C-------GGT-------GAGCGATGAGCGGTGAACCCAACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGCTCGTTGCGGAATAGATCGCA----C-------------CACG---GCCGGA----AAATGA---GTTTGCTGCGGGTGAAGAACGGCGGAGCTGG---CGGAGCAGG------------------------GG--GCGAGGG----GTCGGG----SizeHit CountTotal NormTotal
No Reads
droTak1
GG--------TG--------------GTTGGGC------------------------------------------------AT-AT--TTTTTCGAGTTGAGTTGACTGGCTGACTGTTC----AGTGACTACTCCTCAATGGC-TTTATCTAATCGGC--------A--CCGTCGGC--------------C-------GAT-------GAACGGTGAACGATGAACCCAGCTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGAAGAGAATTCGCTGGGGAATAGATCGCA----T-------------TACG---GCCGGA----AAATGA---GTTTGTTGCGGGTGAAAAACGGGAGAGGAGG---CGGAGGAGG-----------GGAAGG-------CG--GGGAGGG----GTCAGG----SizeHit CountTotal NormTotal
No Reads
droEug1
AAG-GTGGGGTT--------------ACTGGGT------------------------------------------------AT-T-----TTTCGAG-------------TTGACTGTTC----TGTGACTACTCCTCAATGGC-TTTATCTAATCAGA--------G--GCGTCGGC--------------C-------G--------------ATGAGCGATGAACCAAACTGCGCCACCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAACTCTCTAGAGAGTAGATCACA----C-------------TGTG---AACGGA----AAATGA---GTTTGCTGCGCGTAAAAAAAGA-GAAGGAGT---TGG------------------------------TG--GGGAGGG----ATCAGA---GSizeHit CountTotal NormTotal
No Reads
dm3
CAG-GTGGGGTG--------------AATGGGT------------------------------------------------AT-AT----TTTGGGG-------------CTGACTGTTCAGTCAGTGACTACCCCTCAATGGC-CTTATCTAATCGAC--------GAGACGTCGGC--------------C-------G--------------ATGAACGATGAACCAAACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGCTCGCTGGCGGATAGATCGCT----T-------------TACG---GCCGGG----AAATGA---GTTTGCTGCGCGTGAAAAACGGTGGATCGGG---TGG------------------------------CG--GGGAGGG----GTCGGG----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG---TGG------------------------------CG--GGGAGGG----GT........1918.0080000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000002000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CGGG---TGG------------------------------CG--GGGAGGG----GT........1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100110000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AACGGTGGATCGGG---TGG------------------------------C........................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
........................................................................................................................................................................................................................................................................................................................................................................G----AAATGA---GTTTGCTGCGCGT...............................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG---TGG------------------------------CG--GGGAGGG----G.........1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................ATGA---GTTTGCTGCGCGTGAAA...........................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG---TGG------------------------------CG--GGGAGGG----GTC.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................AAACGGTGGATCGGG---TGG------------------------------CG--GGGAG................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG---TGG------------------------------CG--GGGAGGG----GTCGGG----2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................CT----T-------------TACG---GCCGGG----AAATG................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AGTCTTGGCAAGAGCTCG.........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GAAAAACGGTGGATCGGG---TGG------------------------------.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................CCGCCGAAG-------------------------------------------TTGTCCAGTCTT.....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................G---GCCGGG----AAATGA---GTTTGC......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGCGTGAAAAACGGTG....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................................................................AGATCGCT----T-------------TACG---GCCGGG----AAAT.................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................AGTGACTACCCCTCAATGGC-CTTATCTAATCGAC--------G..........................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG---TGG------------------------------CG--GGGAGGG----GTT.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AATGA---GTTTGCTGCGCGTG..............................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CCGGG----AAATGA---GTTTGCT.....................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CGGG---TGG------------------------------CG--GGGAGGG----GTCGGG----2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TGA---GTTTGCTGCGCGTGAA............................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG---TGG------------------------------CG--GGGAGGG----GTA.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AAAACGGTGGATCGGG---TGG------------------------------C........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GG---TGG------------------------------CG--GGGAGGG----GTCGGG----2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................ACGGTGGATCGGG---TGG------------------------------CG--.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................A---GTTTGCTGCGCGTGAAA...........................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................T-------------TACG---GCCGGG----AAATGA---GTTTGCTGCGC.................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................CGCTGGCGGATAGATCGC.........................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGATCGGG---TGG------------------------------CG--GGGAG................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GGTGGATCGGG---TGG------------------------------CG--GGGAGG...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
............................................................................................................................................TGGC-CTTATCTAATCGAC--------GAG........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................G---GCCGGG----AAATGA---GTTTGCTG....................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................G----AAATGA---GTTTGCTGCGC.................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TG--------------AATGGGT------------------------------------------------AT-AT----TTTGA...................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
droSim2
CAG-GTGGGGTG--------------AATGGGT------------------------------------------------AT-AT----TTTGGGG-------------CTGACTGTTC----AGTGACTACCCCTCAATGGC-CTTATCTAATCGAC--------GAGACGTCGGC--------------C-------G--------------ATGAACGATGAACCAAACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGCTCGCTGGCGGATAGATCGCT----T-------------TACG---GCCGGG----AAATGA---GTTTGCTGCGCGTGAAAAACGGTGGATCGGG---TGG------------------------------CG--GGGAGGG----GTCAGG----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG---TGG------------------------------CG--GGGAGGG----G.........1813.00300000100002000000
.............................................................................................................................................................................................................................................................................................................GGCAAGAGCTCGCTGGCGGATAG..............................................................................................................................................2311.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................GGATAGATCGCT----T-------------TACG---GCC............................................................................................................2011.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGATCGGG---TGG------------------------------CG--GGGA.................1911.00100000000000001000
..........................................................................................................................................................................................................................................................................................................CTTGGCAAGAGCTCGCTGGC....................................................................................................................................................2011.00101000000000000000
................................................................................................................................................................................................................................................................................................................AAGAGCTCGCTGGCGGATAGATCGG.........................................................................................................................................2511.00101000000000000000
..........................................................................................................................................................................................................................................................................................................CTTGGCAAGAGCTCGCTGGCGGATAGAT............................................................................................................................................2811.00101000000000000000
...............................................................................................................................................................................................................................................................................................................CAAGAGCTCGCTGGCGGATAGATCGCT----....................................................................................................................................2711.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................G----AAATGA---GTTTGCTGCGCGT...............................................................................2011.00100010000000000000
....................................................................................................................................................................................................................................................................................................................GCTCGCTGGCGGATAGATCGCT----T-------------TAC...................................................................................................................2611.00101000000000000000
....................................................................................................................................................................................................................................................................................................................GCTCGCTGGCGGATAGATCGC.........................................................................................................................................2111.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATCGGG---TGG------------------------------CG--GGGAGGG----..........1811.00100010000000000000
droSec2
CAG-GTGGGGTG--------------AATGGGT------------------------------------------------AT-AT----TTTGGGC-------------CTGACTGTTC----AGTGACTACCCCTCAATGGC-CTTATCTAATCGAC--------GAGACGTCGGC--------------C-------G--------------ATGAACGATGAACCAAACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGCTCGCTGGCGGATAGATCGCT----T-------------TACG---GCCGGG----AAATGA---GTTTGCTGCGCGTGAAAAACGGTGGATCGGG---TGGTGG---------------------------GG--GTGAGGG----GTCAGG----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................GAAAAACGGTGGATCGGG---TGGT......................................................2212.0020200
..........................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCGTGAAAAACGGTGG...................................................................2112.0020020
.......................................................................................................................................................................................................................................................................................................................CGCTGGCGGATAGATCGCT----....................................................................................................................................1912.0020020
....................................................................................................................................................................................................................................................................................................................GCTCGCTGGCGGATAGATCGCT----....................................................................................................................................2212.0020110
.................................................................................................................................................................................................................................................................................................................................................................................................................CGGG---TGGTGG---------------------------GG--GTGAGGG----G.........2011.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................AACGGTGGATCGGG---TGGT......................................................1811.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................................AAAACGGTGGATCGGG---TGGT......................................................2011.0010100
.......................................................................................................................................................................................................................................................................................................................CGCTGGCGGATAGATCGC.........................................................................................................................................1811.0010010
..........................................................................................................................................................................................................................................................................................................CTTGGCAAGAGCTCGCTGGC....................................................................................................................................................2011.0010010
....................................................................................................................................................................................................................................................................................................................GCTCGCTGGCGGATAGATCGC.........................................................................................................................................2111.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG---TGGTGG---------------------------GG--GTGAGGG----..........2011.0011000
....................................................................................................................................................................................................................................................................................................................GCTCGCTGGCGGATAGATCG..........................................................................................................................................2011.0011000
droYak3
GT----GGGGTG--------------AATGGGT------------------------------------------------AT-AT----TTTGGAG-------------CTGACTGTTC----AGTGACTACCCCTCAATGGC-TTTATCTAATCGAC--------GAGTCGTC--CCGTCGTCCGTCGGCC-------GCT-------GAACGATGAACGATGAACCAAACTGCGTCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGTTCGCTGGCGGATAGATCACA----T-------------TACG---GCCGGA--GGAAATGA---GTTTGCTGCGCGTGAAAAACGGTGGAGCGGTTGGCGGTGGTGG------------------------CG--GGGAGGG----ATCAGG----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................AAGAGTTCGCTGGCGGATA...............................................................................................................................................1913.00300000120000
............................................................................................................................................................................................................................................................................................................................................................................................TGCGCGTGAAAAACGGTGGAGC................................................................2213.00300000030000
.............................................................................................................................................................................................................................................................................................................GGCAAGAGTTCGCTGGCGG..................................................................................................................................................1912.00202000000000
..........................................................................................................................................................................................................................................................................................................CTTGGCAAGAGTTCGCTGGC....................................................................................................................................................2012.00202000000000
...................................................................................................................................................................................................................................................................................................................................GATCACA----T-------------TACG---GCCGGA--GG.....................................................................................................2012.00201100000000
......................................................................................................................................................................................................................................................................................................................................CACA----T-------------TACG---GCCGGA--GGAAATGA---GTTTGC......................................................................................2911.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAACGGTGGAGCGGTT............................................................2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................CACA----T-------------TACG---GCCGGA--GGAAAT.................................................................................................2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................GGA--GGAAATGA---GTTTGCTGCG..................................................................................2111.00101000000000
...........................................................................................................................................................................................................................................................................................................TTGGCAAGAGTTCGCTGGCGGATA...............................................................................................................................................2411.00101000000000
.......................................................................................................................................................................................................................................................................................................................CGCTGGCGGATAGATCACA----T-------------......................................................................................................................2011.00100001000000
.............................................................................................................................................................................................................................................................................................................GGCAAGAGTTCGCTGGCGGATAGATCAC.........................................................................................................................................2811.00110000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAACGGTGGAGCGGTTGGC.........................................................2411.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................CGTGAAAAACGGTGGAGCG...............................................................1911.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCGTGAAAAACGGTGG...................................................................2111.00101000000000
..................................................................................................................................................................................................................................................................................................................................AGATCACA----T-------------TACG---GCCGGA--GGA....................................................................................................2211.00101000000000
................................................................................................................................................................................................................................................................................................................AAGAGTTCGCTGGCGGATAG..............................................................................................................................................2011.00101000000000
......................................................................................................................................................................................GTCCGTCGGCC-------GCT-------GAACGATGAACG....................................................................................................................................................................................................................................................2611.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................GA--GGAAATGA---GTTTGCTGCGCGTGA.............................................................................2511.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCGGTGGTGG------------------------CG--GGGAGGG----..........2311.00101000000000
................................................................................................................................................................................................................................................................................................................................ATAGATCACA----T-------------TACG---GCC............................................................................................................1811.00110000000000
.............................................................................................................................................................................................................................................................................................................................................................................AAATGA---GTTTGCTGCGCGTGA.............................................................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................AATGA---GTTTGCTGCGCGTGAA............................................................................2111.00101000000000
...................................................................................................................................................................................................................................................................................................................AGTTCGCTGGCGGATAGAT............................................................................................................................................1911.00100000100000
.........................................................................................................................................................................................................................................................................................................................................A----T-------------TACG---GCCGGA--GGAAATGA---GTTTGC......................................................................................2611.00100000010000
.............................................................................................................................................................................................................................................................................................................GGCAAGAGTTCGCTGGCGGATAG..............................................................................................................................................2311.00100000010000
.......................................................................................................................................................................................................................................................................................................................CGCTGGCGGATAGATCACA----T-------------TACG---GCC............................................................................................................2711.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AACGGTGGAGCGGTTGGC.........................................................1811.00101000000000
...............................................................................................................................................................................................CC-------GCT-------GAACGATGAACGATGA................................................................................................................................................................................................................................................2111.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................AATGA---GTTTGCTGCGCGTGAAAAACGGTG....................................................................2911.00100000010000
...............................................................................................................................................................................................................................................................................................................................GATAGATCACA----T-------------TACG---GCC............................................................................................................1911.00110000000000
.................................................................................................................................................................................................................................................................................................................................TAGATCACA----T-------------TACG---GCCGGA--GGA....................................................................................................2311.00101000000000
droEre2
TG--------TG--------------AATGGGT------------------------------------------------GT-AT----TTTGGAG-------------CTGACTGTTC----AGTGACTACCCCTCAATGGC-TTTATCTAATCGAC--------GAGACGCCGACCGTAGAA-------CGTTGAACGGTGAACGGTGAACGATGAACGATGAACCAAACTGCGCCGCCGAAG-------------------------------------------TTGTCCAGTCTTGGCAAGAGTGCGCTGGTGGAAAGATCACA----T-------------TACG---GCCGGA----AAATGA---GTTTGCTGCGCGTGAAAAGCGGTGGAGCGGG---TGG------------------------------CG--GGGAGGG----GTCAGGTGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................T-------------TACG---GCCGGA----AAATGA---G...........................................................................................1811.0010000010
...................................................................................................................................................................................................................................................................................................................AGTGCGCTGGTGGAAAGAT............................................................................................................................................1911.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................AATGA---GTTTGCTGCGCGT...............................................................................1811.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................GCGGG---TGG------------------------------CG--GGGAGGG----G.........1811.0010000010
.........................................................................................................................................................................................................................................................................................................................................A----T-------------TACG---GCCGGA----AAATGA---GTTTGC......................................................................................2411.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGCGGG---TGG------------------------------CG--GGGAGGG----..........2211.0010000100
....................................................................................................................................................................................................................................................................................................................GTGCGCTGGTGGAAAGATCA..........................................................................................................................................2011.0010000100
....................................................................................................................................................................................................................................................................................................................GTGCGCTGGTGGAAAGATCAC.........................................................................................................................................2111.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................TTGCTGCGCGTGAAAAGCG.......................................................................1911.0010000100
..........................................................................................................................................................................................................................................................................................................CTTGGCAAGAGTGCGCTGGTGG..................................................................................................................................................2211.0010000010
..............................................................................................................................................................................................................................................................................................................................GGAAAGATCACA----T-------------TACG---GC.............................................................................................................1911.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................GA---GTTTGCTGCGCGTGAAAAGCGGTGGA..................................................................2811.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................TGCGCGTGAAAAGCGGTGGAGCGGG---T.........................................................2611.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................GGAGCGGG---TGG------------------------------CG--GGGAGG...............1911.0010000100
................................................................................................................................................................................................................................................................................................................AAGAGTGCGCTGGTGGAAAGATCAC.........................................................................................................................................2511.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................GCGGG---TGG------------------------------CG--GGGAGGG----GTCA......2111.0011000000
......................................................................................................................................................................................................................................................................................................................GCGCTGGTGGAAAGATCA..........................................................................................................................................1811.0010000100
dp5
TG--------TG--------------C-AGAGC-----------AAAGTTAGGGGACGGGGCGGGGGAGTGGCGCGGGGCAATGAT----TGTGATT-------------CTGATTGTG-----AGT-ACTCCTCCTCAATGGT-TTTATCTAATCGGG--------G-GGCGCCGAC-----------------------------------------GCGATGAG-CGAACTGCGTCGCCAAAGAGCGCCCAGAGTCAGAGCCAGGTCGGGAGGCATCGGACAGCGGGCGCCCAGTCTTGCTGCCAGCTAGCAGCCGAACAGATTG-A----T-------------TGTG---GCCCAAAGAGAAATGAGTAGTCTGCTACGTGTGAAGAACGGAGCG-GGGC---AAG-----------------------------------CGG---AGGGCAGCAA----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGCG-GGGC---AAG-----------------------------------C...................1812.0020200000000
...............................................................................................................................................................................................................................................................................GGAGGCATCGGACAGCGG.................................................................................................................................................................................1821.5030300000000
..........................................................................................................................................................................................................................................................................................................................AGCCGAACAGATTG-A----T-------------TGTG---GCCCA..........................................................................................................2511.0010100000000
...............................................................................................................................................................................................................................................................................................................TGCCAGCTAGCAGCCGAA.................................................................................................................................................1811.0010100000000
..............................................................................................................................................................................................................................................................................................................................GAACAGATTG-A----T-------------TGTG---GCC............................................................................................................1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................CTGCTACGTGTGAAGAACGGA.....................................................................2111.0010000100000
.......................................................................................................................................................................................................................................................................................................................................................................AAAGAGAAATGAGTAGTCTGC......................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................AGTCTGCTACGTGTGAAGAACGGAGCG-.................................................................2711.0010100000000
.................................................................................................................................................................................................................................................................................................................................CAGATTG-A----T-------------TGTG---GCCCAAAGAGA....................................................................................................2411.0010000001000
..............................................................................................................................................................................................................................................................................................................................................................................AATGAGTAGTCTGCTACGTGTGAAG...........................................................................2511.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................G-GGGC---AAG-----------------------------------CGG---AGGGCAGC......1911.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................CTACGTGTGAAGAACGGAGC...................................................................2011.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................................TACGTGTGAAGAACGGAGCG-GGGC---..........................................................2411.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CGGAGCG-GGGC---AAG-----------------------------------CGG---AG............1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................CCAAAGAGAAATGAGTAGTCT........................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................TGCCAGCTAGCAGCCGAACAG..............................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................AGCAGCCGAACAGATTG-A----....................................................................................................................................1811.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................AGTCTGCTACGTGTGAAGAACGGAGC...................................................................2611.0010100000000
droPer2
GCGGGTACCGAG--------------AGAGAGT--GTGCAGAGCAGAGTTAGGGGACGGGGCGGGGCAGTGGCGCGGGGCAATGAT----TGTGATT-------------CTGATTGTG-----AGT-ACTCCTCCTCAATGGT-TTTATCTAATCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
T----------------------------------------------------------------------------------------------------------------------------------ACTCCTCAATGGCCCTTATCTAATCACA--------G-TACAGCGGG--------------C-------G---AATTGTGT---GCGACCGACAAGCCGAG-------------A----------GTGT-----------------GTTGA---GT-GGCGTCCAGTCTTGCTAGCAGCCTGCCTTTGAACAGATTGATTTGATTTGGGTGTGAACTCACG---GG--GAAACGTTATGA---GTTTGCTGCGTACGAAGAATGGGCAT-----------------------------------------------------------GAG----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................AGATTGATTTGATTTGGGTGT...........................................................................................................................2113.00300120
...................................................................................................................................................................................................................................................................................................................................GATTGATTTGATTTGGGTGTGAACT......................................................................................................................2512.00200020
...................................................................................................................................................................................................................................................................................................................................GATTGATTTGATTTGGGTGT...........................................................................................................................2012.00200200
...................................................................................................................................................................................................................................................................................................................................GATTGATTTGATTTGGGTGTGAA........................................................................................................................2312.00200020
......................................................................................................................................................................................................................................................................................................................................................................................GTTTGCTGCGTACGAAGAATGGGC....................................................................2412.00220000
......................................................................................................................................................................................................................................................................................................................................................TGAACTCACG---GG--GAAACGTT...................................................................................................2012.00200200
.........................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGTACGAAGAATGGGC....................................................................2111.00100010
..........................................................................................................................................................................................................................................................................................................................CTTTGAACAGATTGATTTGATTTGGGT.............................................................................................................................2711.00100100
....................................................................................................................................................................................................................................................................................................................................ATTGATTTGATTTGGGTGT...........................................................................................................................1911.00100010
.......................................................................................................................................................................................................................................................................................................................................GATTTGATTTGGGTGTGAACTCACG---GG--GA.........................................................................................................2911.00100100
..............................................................................................................................................................................................................................................................................................................................GAACAGATTGATTTGATTTGGGTGT...........................................................................................................................2511.00100010
......................................................................................................................................................................................................................................................................................................................................................................................GTTTGCTGCGTACGAAGAATGGGCA...................................................................2511.00100010
............................................................................................................................................................................................................................................................................................................................................GATTTGGGTGTGAACTCACG---GG--GA.........................................................................................................2411.00100100
...................................................................................................................................................................................................................................................................................................................................GATTGATTTGATTTGGGTGTGAAC.......................................................................................................................2411.00100010
........................................................................................................................................................................................................................................................................................................................................................................AAACGTTATGA---GTTTGCTGC...................................................................................2011.00100010
...............................................................................................................................................................................................................................................................................................................................................................................ATGA---GTTTGCTGCGTACGAAGAATGGGC....................................................................2811.00100100
..........................................................................................................................................................................................................................................................................................................CTTGCTAGCAGCCTGCCTTTGAACA...............................................................................................................................................2511.00101000
......................................................................................................................................................................................................................................................................................................................................TGATTTGATTTGGGTGTGAACT......................................................................................................................2211.00100100
droVir3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGA---GTTTGCTACGTCCCAAAAATGTGGGCGGCAA---CAG------------------------------CA--ATGAGGGGCGTGCCAGC----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................GCAA---CAG------------------------------CA--ATGAGGGGC............1811.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AA---CAG------------------------------CA--ATGAGGGGCGTGCT.......2111.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................GGCAA---CAG------------------------------CA--ATGAGGGGCGT..........2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGA---GTTTGCTACGTACCAAAAAAGGGGGCGGCAG---CAGCAGC----------GG-------------C--G-ACAGTGGGCGTGCCAGC---GSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................CTACGTACCAAAAAAGGGGGC..................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAGGGGGCGGCAG---C.........................................................1911.001100000
droGri2
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGA---GTTTGCTACGTGCCAAAAATGGTGGCGCTGC---CGGCGGCA-----------------------------ACGATGGGCGTGCCAGC----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................ATGA---GTTTGCTACGTGCCAAAA..........................................................................2211.00110

Generated: 05/18/2015 at 06:46 AM