ID:

dan_3247

 Coordinate:

scaffold_13340:23200967-23201233 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.53 -35.53 -35.53

Flybase annnotation

exon [dana_GLEANR_17346:14]; CDS [Dana\GF16070-cds]; CDS [Dana\GF16070-cds]; exon [dana_GLEANR_17346:15]; intron [Dana\GF16070-in]

Repeatable elements

NameClassFamilyStrand
(ATTCG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_13117:3479502-3479520 -
  2. scaffold_13117:5636810-5636828 -
  3. scaffold_13266:1443164-1443182 -
  4. scaffold_13334:949234-949252 +
  5. scaffold_13337:14841234-14841252 -
  6. dan_3247  scaffold_13340:23201144-23201162 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCACGGACTGGCGACACTCCTGCAGCAACCTAGTCCGGTCATCCAGCGTGGTGAGTAGTCGTCACATCGACCCCGTCAGACATCCAGCTAGATTACATAACCCGTACTCACATATGCCAAGAAACACACACACACACAACAAACACACATTAGAGCGACTCCAGGTGATGGGTAGGACGCTTAGAACACTCAACACACTCACCCATCCAAGATACTCTCCACTCCAACCCCGTCTACTCCACTGTACTGTAAGCTAACCAAGTAACAACCCATTAACCATGCTGCTCCACTCGAATCGAATCGAATTGAATCGCTAGACGCTCCTGCCAGTAACTTCCTCCAGCATCCGCATCTCAATCCCGGCCAG
**************************************************(((((((((((......))))...(((((........)).)))...........))))))).........................................(((((....((((((((((((.(((((...................................................))))).......((((((............))).)))))))))).))).)).)))))....(((.((((......)))).)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
 V039
embryo
 V055
head
 V105
male body		 M044
female body
............................CCTAGTCCGGTCATCCAGCGTGGTAAT........................................................................................................................................................................................................................................................................................................................ 27 2 1 1.00 1 0 1 0 0 0 0
........TGGCGACACTCCTGCAGCAACCTAGTCC........................................................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................AACCCCGTCTACTCGACAGC.......................................................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0
.........................................................................................................................AAACACACACACACACAAC................................................................................................................................................................................................................................... 19 0 6 0.17 1 1 0 0 0 0 0
........................................ATCCCGTGTGGTGAGGAGT.................................................................................................................................................................................................................................................................................................................... 19 3 14 0.14 2 0 0 0 0 2 0
................................................................................................................................................................................................................................................................................................................................CTCCTGCGAGTAACCTGCTC........................... 20 3 8 0.13 1 0 0 0 1 0 0
...................................................................................................................................................................................................................................CCCCGTCCGATCCACTGTA......................................................................................................................... 19 3 14 0.07 1 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................................................................GCAGTATGTTCCTCCAGCA...................... 19 3 20 0.05 1 0 0 1 0 0 0
.......................................................................................................................................ACAACAAACGGACAGTAGAG.................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1
.....................................................................................................................................................................................TCGAACACTCAGGACACTC....................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GGTGCCTGACCGCTGTGAGGACGTCGTTGGATCAGGCCAGTAGGTCGCACCACTCATCAGCAGTGTAGCTGGGGCAGTCTGTAGGTCGATCTAATGTATTGGGCATGAGTGTATACGGTTCTTTGTGTGTGTGTGTGTTGTTTGTGTGTAATCTCGCTGAGGTCCACTACCCATCCTGCGAATCTTGTGAGTTGTGTGAGTGGGTAGGTTCTATGAGAGGTGAGGTTGGGGCAGATGAGGTGACATGACATTCGATTGGTTCATTGTTGGGTAATTGGTACGACGAGGTGAGCTTAGCTTAGCTTAACTTAGCGATCTGCGAGGACGGTCATTGAAGGAGGTCGTAGGCGTAGAGTTAGGGCCGGTC
**************************************************(((((((((((......))))...(((((........)).)))...........))))))).........................................(((((....((((((((((((.(((((...................................................))))).......((((((............))).)))))))))).))).)).)))))....(((.((((......)))).)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V055
head
 V105
male body		 V106
head
...............................................................................................................................................................................................TTGTGGGAATGGGTAGGT.............................................................................................................................................................. 18 2 2 4.00 8 8 0 0 0
.....................................................................................................GGCATGAGAGTGTACGGTTCG..................................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0
....................................................................................................GGGCATGAGAGTGTTCGGTTC...................................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0
.............................................................................................................................................................................................................ACGTTCGATGAGAGGTAAGGT............................................................................................................................................. 21 3 3 0.33 1 0 1 0 0
............................................................................................................................................................................GTCCTGCGAATCTAGTGAGTTA............................................................................................................................................................................. 22 3 4 0.25 1 0 1 0 0
.............................................................................................................................................................................................................AGGTTCGATGAGAGGGAAGGT............................................................................................................................................. 21 3 5 0.20 1 0 1 0 0
...................................................................................................................................................................................................................................................................................TGGTACGACGAGGAGAGCGTG....................................................................... 21 3 5 0.20 1 0 1 0 0
.......................................................................................................................................................................................................................................................................TTGTTCGGTCATCGGTACGAC................................................................................... 21 3 5 0.20 1 0 1 0 0
..............................................................................................................................................................................................................................................................................................CGTGTGCTTAGCTTAGCGTAAC........................................................... 22 3 5 0.20 1 0 1 0 0
........................................................................................................................................................................................................................................................................................CGACGAAGTGATCTTAGCTG................................................................... 20 3 6 0.17 1 0 0 1 0
..............................................................................................................................................................................................TTTGTGGGAATGGGTAGGT.............................................................................................................................................................. 19 3 20 0.15 3 1 0 2 0
.............................................................................................................................................................................................................................................................GATTGATTCATTGTTGTGGA.............................................................................................. 20 3 7 0.14 1 1 0 0 0
............................................................................................................................................................................................GAGTGGTGTAAGTGGGTA................................................................................................................................................................. 18 2 9 0.11 1 0 0 1 0
..................................................................................................................................................................................................................................................................................................................................GGAAGATCGTTGAAGGAGGT......................... 20 3 10 0.10 1 1 0 0 0
..............................................................................................................................................................................................................GGTTCGATGAGAGGTACGGT............................................................................................................................................. 20 3 10 0.10 1 0 1 0 0
..........................................................AGCAGTGAAGGTGGGGC.................................................................................................................................................................................................................................................................................................... 17 2 11 0.09 1 0 1 0 0
...............................................................................................................................................................................................TTGTGGGAATGGGTAGGTTA............................................................................................................................................................ 20 3 12 0.08 1 0 0 1 0
.........................................................................................................................................................................................................................................................................................................................................................AGGCGTAGGGTTAGGGCGGGA. 21 3 13 0.08 1 0 0 0 1
............................................................................................................................................................................................................GAGGTTCTAAGAGAGGTGAGCT............................................................................................................................................. 22 3 19 0.05 1 0 1 0 0
.................................................................................................................................................................................................GTGTGACTCGGTAGGTTCA........................................................................................................................................................... 19 3 19 0.05 1 0 1 0 0
....................................................................CCGGGGCAATCTTTAGGTC........................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0
............................................................................................................................................................................................GAGTTGTGTGGATGCGTAGG............................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0
..................................................................................................................................................................................................................................TGGGGCAGAGGAAGTGTCA.......................................................................................................................... 19 3 20 0.05 1 1 0 0 0
...........................................................................................................AGTGTATAGGGGTCCTTGT................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0
.............................................................................................................................................................................................................................................................................................................................................GAAGGAGGCCGTAGGGGTG............... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:23200917-23201283 - dan_3247 CCACGGACTGGCGACACTCCTGCAGCAACCTAGTCCGGTCATCCAGCGTGGTGAGTAGTCGTCA---------C-----AT---C-GACCC------CGTCAGACATCCAGCTAGATT-----ACATAACC-------CGTACTCACATATGCCAAGAAACACACAC--A----------------CAC------------ACAAC----AAACACACATTAGA--G-CG-ACTCCAGGTGATGGGTAGG-ACGCTTA-GAA--------------------------------------C--------ACTCA-----------------------------------ACACACTCAC----CCATCC--------------AAGATACTCT--------------------------------------CCACT----C---CAACCCCGTCTACTCCACTGTAC--------TGTAAGCTAACC--AAGTAAC----------------------AACCCATTA-----------ACCATGCTGCTCCA------CTCGAAT------------CGAATC-GAATTGAATCGC---------TAGACGCTCCTGCC------------AGTAACTTCCTCCAGCATCCG---------------------CATCTCAATCCCGGC------CAG
droBip1 scf7180000396395:205722-206075 - CCACGGACTGGCGACACTGCTGCAGCAACCTAGTCCGGTCATCCAGCGTGGTGAGTAACCGTCC---------C-----AT-CCTCA----------CGTCAGACGTCCAGCTAGATA-----ACATAACC-------CGTACACACATATGCCAAGAAACACACAC--A------------------C------------AC-------AAACACACATTAGA--G-CG-ACTCCAGGTGATGGGTAGG-ACGCTTA-GA---------------------------------------C--------ACTCC-----------------------------------ACACACTCTCTC-CACATCC--------------AAGACACTCA------------------C-------------------TA-AT----A---C----CCGTCTACTCCACTGTAC--------TGTAAGCTAACC--AAGTAAC----------------------AACCCATTA-----------CCCATGCTGCTCCG------CTCG-----------------AATC-GAACTGAATCGC---------TAGACGCCCCTGCC------------AGCAACTTCCTCCAGCATCCG---------------------CATCTTAGCTCCGGC------CAG
droKik1 scf7180000302634:695369-695678 - CCATGGATTGGCCACGCTGCTGCAGCAGCCCAGCCCCGTCATCCAGCGTGGTGAGTAGCTCCCTCCACTA-GGA---GA-GACC---------------------------------------------------------------------------ACA----C--A--------TACATATCTAT------------ACAAAAGCCACACATACATTAGA--G-CGAACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCACTCACTCATCC--------------AAGATACTCA------------------C-------------------TCACT----A---C-------TCCACTCTA----ACTTACGTTGCGTAAGCTAACC--AAGTAACCAA-GT----------------AACCCATCC-----------CCCATGCTGCTCCG------TC---------------------------------CGC---------TAGAGGCT------------------AGCAATTTTCTCCAGCATCTG---------------------AG------TCCGGGCCA---CCAG
droFic1 scf7180000453850:369904-370239 - CCACGGGCTGGCCACGCTGCTGCAGCAGCCCAGTCCGGTCATCCAGCGGGGTGAGTAGCTCCCG-----ACGGA------GCGCCCTT-----------TT-----------------TCC----------------------------------AC--ACA----C--A--------TACATATCAAT------------ACAG-----ACACACACATTAGA--G-CG-ACTCCAGGTGGTGGGTAGCTGCGCTAA-GAA--------------------------------------C--------CCTCG-----------------------------------ACTCACTCAC----TCATCC--------------AAGACAC----------------------ACTCCCCACTCGCCACTCTCCACTCTCCA---C-------TCTGCTCTACCGTTCTCACGTTGTGTAAGCTAACC--AAGTAACG---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG--C------------T-----------CGATCGC---------TAGAAGCCTCCCCC------------AGCAACTTCCTGCAGCACCCG---------------------AG------TGCTGGC------CAG
droEle1 scf7180000491104:2821168-2821523 - CCACGGGCTGGCGACGCTGCTGCAGCAGCCCAGCCCGGTCATCCAGCGTGGTGAGTAGCTCCCA-----ACGGA------GTTCACTA-----------T-----------------------ACATATCA-------CATAC----AT------AT--CCA----C--A--------TACATATCAAT------------ACAAA----AC--ACACATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAA----ACATCC--------------AAGATACTCA------------------C-------------------CCACT----A---C-------TCTACTCTTCCGTACTCACGTTGTGTAAGCTAACC--AAGTAACAAA-GTAACCAACCAACCCATCAACCCATCC-----------CCCATGCTGCTCCA------CTCG-CT------------GCAATC-G-CTCCAATCGC---------TAGAAGCTTCTCCC------------AGCAATTTTCTGCAACATCTG---------------------AG------TCCTGGC------CAG
droRho1 scf7180000779573:30641-30951 + CCACGGGCTGGCGACGCTGCTGCAGCAGCCTAGCCCAGTCATCCAGCGTGGTGAGTAGCTCCCA-----ACGGA------GTCCACTA-----------TT------------------------------------------------------AG--ACA----C--A--------TACATATCAAT------------ACAAC----ACACACACATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAA----TCATCC--------------AAGATACTCA------------------C-------------------CCACT----A---C-------TCTACTATACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCA------CTCG----------------------------AATCGC---------TAGAAGCTTCCCCA------------AGCAACTTTCTCCAGCACCTG---------------------AA------TCCTGGC------CAG
droBia1 scf7180000302411:746187-746495 - CCATGGGCTGGCCACGCTACTGCAGCAGCCCAGCCCGGTCATCCAGCGTGGTGAGTAGCTCCCA-----AGGGA------GTGCATTA-----------TT------------------------------------------------------AG--ACA----C------------ACAATTCAAA------------ACAAA----ACACACACATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAG----TCATCC--------------AAGATACTTA------------------C-------------------CCACT----A---C-------TCTACTCTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCA------CTCG----------------------------AAACGC---------TAGAAGCTTCCCCC------------AGCAACTTTCTCCATCATCTG---------------------AA------TCCTGGC------CAG
droTak1 scf7180000415789:734105-734409 - CCACGGACTGGCTACCCTGCTGCAGCAGCCCAGCCCGGTCATCCAGCGTGGTGAGTAGCTCCCA-----ACGGA------GTGC-----------------------------------------------------------------------------A----C--A--------TACATATCAGT------------ACAAA----ACACACACATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAA----TCATCC--------------AAGATACTCA------------------C-------------------CCACT----A---C-------TCTACTCTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACCAA-CC----------------AACCCCTTC-----------CCCATGCTGCTCCA------CTCG----------------------------AATCGC---------TAGAAGCTTCTCCC------------AGCAACTTTCTGCAGCATCTG---------------------AA------TCCTGGC------CAG
droEug1 scf7180000409759:965546-965856 - TCACGGGCTAGCTACGCTGCTTCAGCAGCCCAGTCCGGTCATCCAGCGTGGTGAGTAGCTCCCA-----ACGGA------GCCCACTG-----------TT------------------------------------------------------AG--ACA----C--A--------TACATATCAAT------------ACAAA----ACACACACATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAG----TCATCC--------------AAGATACTCA------------------C-------------------CCACT----T---C-------TCTACTCTACCGTACTCACATTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG----------------------------AATCGC---------TAGAAGCTTCCCCC------------AGCAACTTTCTTCAGCATCTG---------------------AA------TCCTGGC------CAG
dm3 chr3R:1006510-1006828 - TCACGGGTTGGCTACACTACTTCAGCAGCCTAGTCCTGTGATCCAGCGTGGTGAGTAGCTCCCA-----ATTGA------GCCCACAA-----------TT------------------------------------------------------AG--ACA----C--A--------TACATATCAAT------------ACAAA----ACACACATATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-AAA--------------------------------------CAACTCACAACTCA-----------------------------------ACTCACTTAA----TCATCC--------------AAGATACTTA------------------C-------------------CCACT----A---C-------TCTACTGTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG----------------------------AATCGC---------TAGAAGCTTCCCCC------------AGCAACTTTCTGCAGCATCTG---------------------AA------TACTGGC------CAG
droSim2 3r:912318-912636 - TCACGGGCTGGCTACGCTGCTCCAGCAGCCTAGTCCGGTGATCCAGCGTGGTGAGTAGCTCCCA-----ATGGA------GCCCACAA-----------TT------------------------------------------------------AG--ACA----C--A--------TACATATCAAT------------ACAAA----ACACACATATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-AAA--------------------------------------CAACTCACAACTCA-----------------------------------ACTCACTCAA----TCATCC--------------AAGATACTTA------------------C-------------------CCACT----A---C-------TCTACTCTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG----------------------------AATCGC---------TAGAAGCTTCCCCC------------AGCAACTTTCTGCAGCATCTG---------------------AA------TACTGGC------CAG
droSec2 scaffold_6:1129569-1129887 - TCACGGGCTGGCTACGCTGCTCCAGCAGCCTAGTCCGGTGATCCAGCGTGGTGAGTAGCTCCCA-----ATGGA------GCCCACAA-----------TT------------------------------------------------------AG--ACA----C--A--------TATATATCAAT------------ACAAA----ACACACATATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-AAA--------------------------------------CAACTCACAACTCA-----------------------------------ACTCACTCAA----TCATCC--------------AAGATACTTA------------------C-------------------CCACT----A---C-------TCTACTCTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG----------------------------AATCGC---------TAGAAGCTTCCCCC------------AGCAACTTTCTGCAGCATCTG---------------------AA------TACTGGC------CAG
droYak3 3R:1366287-1366597 - TCATGGGCTGGCTACGCTACTGCAGCAACCTAGTCCGGTCATTCAGCGTGGTGAGTAGCTCCCA-----AAGGA------GCCCATAC-----------GT------------------------------------------------------AG--AGA----C--A--------CACATATCAAA------------ACAAA----ACACACATATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAG-AAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAA----ACAACC--------------AAGATATTTA------------------C-------------------CCACT----A---C-------TCTACTCTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACA---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG----------------------------AATCGC---------TAGAAGCCTCCCCC------------AGCAACTTTCTGCAGCCTCTA---------------------AA------TACTGGC------CAG
droEre2 scaffold_4770:1281348-1281658 - TCACGGGCTGGCTACACTGCTGCAGCAGCCTAGTCCGGTCATCCAGCGTGGTGAGTAGCTCCCA-----AAGGA------GCCCACAA-----------TT------------------------------------------------------AG--ACA----C--A--------TACATATCAAT------------ACAAA----ACACACATATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAA----TCATCC--------------AAGATACTTA------------------C-------------------CCACT----A---C-------TCTACTCTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG----------------------------AATCGC---------TAGAAGCCTCTCCC------------AGCAACTTTCTGCAGCATCTG---------------------AA------TACTGGC------CAG
dp5 2:21791291-21791687 + dps_699 CCATGGACTGGCGACGCTGCTCCAGCAGCCCAGTCCCGTCATCCAGCGTGGTGAGTAGCATCCGCC-CTA-GGATCCGC-GCCTACAC-----------AT------------------------------------------------------AG--A-----------------------------------------------------TACACATTAGAGAG-CT-ACGCCAGGTGTTGGGTAGA-ACGCTAA-GAA--------------------------------------GAACAC---ACTCATTCACAGA--CACTCAGATACTCAAACACCCAAACACTCACACAC----TCAACCGAAAGATACTCACAAAGATACTCACACACTCAAAGATAC----ATTCCACACTC-----------------------------TCCAGTCAG--------TCGTTGTGTAAGCTAACA-AAAGTAACCAAAGG------------------TCCTTCCCCCCACCCAAATCCATGCTGCTCCT------CTA--CT------------CCGATCTG-CTCTGATCTCTGCTCTGCATAGAAGCCTCCTCG------------AGCAACTTCCTCCAGCAACTG---------------------CA------GCCGAAC------CAG
droPer2 scaffold_3:4575193-4575589 + CCATGGACTGGCGACGCTGCTCCAGCAGCCCAGTCCCGTCATCCAGCGTGGTGAGTAGCATCCGCC-CTA-GGATCCGC-GCCTACAC-----------AT------------------------------------------------------AG--A-----------------------------------------------------TACACATTAGAGAG-CT-ACGCCAGGTGTTGGGTAGA-ACGCTAA-GAA--------------------------------------GAACAC---ACTCATTCACAGA--CACCCAAACACTCAAACACCCAAACACTCACACAC----TCAACCGAAAGATACTCACAAAGATACTCACACACTCAAAGATAC----ATTCCACACCC-----------------------------TCCAGTCAG--------TCGTTATGTAAGCTAACA-AAAGTAACCAAAGG------------------TCCTTCCCCCCACCCAAATCCATGCTGCTCCT------CTA--CT------------GCGATCTG-CTCTGATCTCTGCTCTGCATAGAAGCCTCCTCG------------AGCAACTTCCTCCAGCAACTG---------------------CA------GCCGAAC------CAG
droWil2 scf2_1100000004943:12923867-12924195 + TCATGGCCTGGCCACGCTGCTTCAACAACCAAGCCCAGTTATTCAGCGTGGTGAGTAGGC-----------GAA------GCCAAC-GCTAATTCTTTGCCAGGTGTTTGGGTACAAG-----ACTAAGA-ACTCACACAC------------------ACTCACACACATACATATTTATTCACTGACATATTCACACATAT-------AAACACACA---GA--G-AG-ATAC-------------------------A--------------------------------------------------------------------------------------------------------------------ATCATAAACACACACACA----------------------------------------------------------------CACTGAACAAAAGTTGTGTAAGCTAACC--AAGTAACA---------------------AGTATAAAC-----------CC-TCGACTC--CCAATT----CC-C-ATTTAACATGCT-------------AACCGC---------TAGAAGCTCCAATGAGC---------AACAACTTTCTGCAGCAACAT---------------------CA------GCAGCCA------CAA
droVir3 scaffold_12855:7894734-7895112 + dvi_4424 TCACGGTCTGGCAACGCTGCTGCAGCAGCCCAGTCCGGTTATACAGCGTGGTGAGTAGTT-----------GGA------GCTCC-GGCCA------C-------GCCCAGCCAA--T-----ACACAACCACACACACACAC------------AC--ACA----C--A--------CACACATAGAT------------AC-------ACACTCACATTAGACAC-AC-AGAAATGGTGCTGGGTAGC--TGCTAA-A------------------------------------------------------------------------------------------------------------CGAAAGTAAATAACAATAATAAATACACACACACACACAC----ATGC---------------AC-------ACACAGA-----TCTTG----TCGAGC---TGTTGTGTAAGCTAATCCAAAGTAACT---------------------GAATT---C-----------CCCCTAACCC--CGCATTCGCTC----TTTGAACATGCCG--------------CCGC---------AAAAAGATGCAACTAGCAGCAGCAGTAGCAATTATTTGCA---ACTGCAGCAACAACAACAGCAACAA---------------CATCTGCAA
droMoj3 scaffold_6540:23125175-23125592 + TCATGGGCTGGCAACGCTGCTGCAGCAGCCCAGTCCCGTTATACAGCGTGGTGAGTAGCT-----------GGA------GCTCA-GGCCA------C-------ACCCAACCAA--T-----A------------------CAAAC--------ACAAACACACAC--A--------TGCA-----------------------------TACATACATTAGTCACACT-AAACAAGGTGCTGGGTAGC--TGCTAAAGAAACAGTATATAATATAATATAATATAAATAAAGAGTACAC--------ACTCG---ACAAACACACACGTATACTCA--CACACATACACAGACACAC----TCGA---------ATACATAGAGACACTCATACACA---AGATAGAGA-ATTTGAT---------------------------------TCTCGCTCAC--------TGTTGTGTAAGCTAA---------------------------------------TCC-----------CCCCTATTCCTACGCATTCGCTC----TTTAAACATGCTGCCA---------------------------AAGAACCAACTAGTAGCAGC---AGCAACTATTTGCA---ACTGCAACAACAACAACAACAACAC---------------CAACTGCAA
droGri2 scaffold_15074:4476897-4477070 + TCATGGTCTGGCAACGTTGCTGCAACAGCCCAGTCCCGTTATACAGCGTGGTGAGTAGTAGTTG---------C-----AA-CTACAGTTA------C-------GCCCAGCTAA--TACTACACACAACA-------TGCACAC--------------ACA----C--A--------CACACACAGACACACTCACACATTTAAC----ACACACACACACTT--A-CT---ACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG------TGCCGGG------TAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CCACGGACTGGCGACACTCCTGCAGCAACCTAGTCCGGTCATCCAGCGTGGTGAGTAGTCGTCA---------C-----AT---C-GACCC------CGTCAGACATCCAGCTAGATT-----ACATAACC-------CGTACTCACATATGCCAAGAAACACACAC--A----------------CAC------------ACAAC----AAACACACATTAGA--G-CG-ACTCCAGGTGATGGGTAGG-ACGCTTA-GAA--------------------------------------C--------ACTCA-----------------------------------ACACACTCAC----CCATCC--------------AAGATACTCT--------------------------------------CCACT----C---CAACCCCGTCTACTCCACTGTAC--------TGTAAGCTAACC--AAGTAAC----------------------AACCCATTA-----------ACCATGCTGCTCCA------CTCGAAT------------CGAATC-GAATTGAATCGC---------TAGACGCTCCTGCC------------AGTAACTTCCTCCAGCATCCG---------------------CATCTCAATCCCGGC------CAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........TGGCGACACTCCTGCAGCAACCTAGTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.............................................................................................................................................................AAACACACAC--A----------------CAC------------ACAAC----.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.171010000
droBip1
CCACGGACTGGCGACACTGCTGCAGCAACCTAGTCCGGTCATCCAGCGTGGTGAGTAACCGTCC---------C-----AT-CCTCA----------CGTCAGACGTCCAGCTAGATA-----ACATAACC-------CGTACACACATATGCCAAGAAACACACAC--A------------------C------------AC-------AAACACACATTAGA--G-CG-ACTCCAGGTGATGGGTAGG-ACGCTTA-GA---------------------------------------C--------ACTCC-----------------------------------ACACACTCTCTC-CACATCC--------------AAGACACTCA------------------C-------------------TA-AT----A---C----CCGTCTACTCCACTGTAC--------TGTAAGCTAACC--AAGTAAC----------------------AACCCATTA-----------CCCATGCTGCTCCG------CTCG-----------------AATC-GAACTGAATCGC---------TAGACGCCCCTGCC------------AGCAACTTCCTCCAGCATCCG---------------------CATCTTAGCTCCGGC------CAGSizeHit CountTotal NormTotal
No Reads
droKik1
CCATGGATTGGCCACGCTGCTGCAGCAGCCCAGCCCCGTCATCCAGCGTGGTGAGTAGCTCCCTCCACTA-GGA---GA-GACC---------------------------------------------------------------------------ACA----C--A--------TACATATCTAT------------ACAAAAGCCACACATACATTAGA--G-CGAACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCACTCACTCATCC--------------AAGATACTCA------------------C-------------------TCACT----A---C-------TCCACTCTA----ACTTACGTTGCGTAAGCTAACC--AAGTAACCAA-GT----------------AACCCATCC-----------CCCATGCTGCTCCG------TC---------------------------------CGC---------TAGAGGCT------------------AGCAATTTTCTCCAGCATCTG---------------------AG------TCCGGGCCA---CCAGSizeHit CountTotal NormTotal
No Reads
droFic1
CCACGGGCTGGCCACGCTGCTGCAGCAGCCCAGTCCGGTCATCCAGCGGGGTGAGTAGCTCCCG-----ACGGA------GCGCCCTT-----------TT-----------------TCC----------------------------------AC--ACA----C--A--------TACATATCAAT------------ACAG-----ACACACACATTAGA--G-CG-ACTCCAGGTGGTGGGTAGCTGCGCTAA-GAA--------------------------------------C--------CCTCG-----------------------------------ACTCACTCAC----TCATCC--------------AAGACAC----------------------ACTCCCCACTCGCCACTCTCCACTCTCCA---C-------TCTGCTCTACCGTTCTCACGTTGTGTAAGCTAACC--AAGTAACG---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG--C------------T-----------CGATCGC---------TAGAAGCCTCCCCC------------AGCAACTTCCTGCAGCACCCG---------------------AG------TGCTGGC------CAGSizeHit CountTotal NormTotal
No Reads
droEle1
CCACGGGCTGGCGACGCTGCTGCAGCAGCCCAGCCCGGTCATCCAGCGTGGTGAGTAGCTCCCA-----ACGGA------GTTCACTA-----------T-----------------------ACATATCA-------CATAC----AT------AT--CCA----C--A--------TACATATCAAT------------ACAAA----AC--ACACATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAA----ACATCC--------------AAGATACTCA------------------C-------------------CCACT----A---C-------TCTACTCTTCCGTACTCACGTTGTGTAAGCTAACC--AAGTAACAAA-GTAACCAACCAACCCATCAACCCATCC-----------CCCATGCTGCTCCA------CTCG-CT------------GCAATC-G-CTCCAATCGC---------TAGAAGCTTCTCCC------------AGCAATTTTCTGCAACATCTG---------------------AG------TCCTGGC------CAGSizeHit CountTotal NormTotal
No Reads
droRho1
CCACGGGCTGGCGACGCTGCTGCAGCAGCCTAGCCCAGTCATCCAGCGTGGTGAGTAGCTCCCA-----ACGGA------GTCCACTA-----------TT------------------------------------------------------AG--ACA----C--A--------TACATATCAAT------------ACAAC----ACACACACATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAA----TCATCC--------------AAGATACTCA------------------C-------------------CCACT----A---C-------TCTACTATACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCA------CTCG----------------------------AATCGC---------TAGAAGCTTCCCCA------------AGCAACTTTCTCCAGCACCTG---------------------AA------TCCTGGC------CAGSizeHit CountTotal NormTotal
No Reads
droBia1
CCATGGGCTGGCCACGCTACTGCAGCAGCCCAGCCCGGTCATCCAGCGTGGTGAGTAGCTCCCA-----AGGGA------GTGCATTA-----------TT------------------------------------------------------AG--ACA----C------------ACAATTCAAA------------ACAAA----ACACACACATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAG----TCATCC--------------AAGATACTTA------------------C-------------------CCACT----A---C-------TCTACTCTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCA------CTCG----------------------------AAACGC---------TAGAAGCTTCCCCC------------AGCAACTTTCTCCATCATCTG---------------------AA------TCCTGGC------CAGSizeHit CountTotal NormTotal
No Reads
droTak1
CCACGGACTGGCTACCCTGCTGCAGCAGCCCAGCCCGGTCATCCAGCGTGGTGAGTAGCTCCCA-----ACGGA------GTGC-----------------------------------------------------------------------------A----C--A--------TACATATCAGT------------ACAAA----ACACACACATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAA----TCATCC--------------AAGATACTCA------------------C-------------------CCACT----A---C-------TCTACTCTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACCAA-CC----------------AACCCCTTC-----------CCCATGCTGCTCCA------CTCG----------------------------AATCGC---------TAGAAGCTTCTCCC------------AGCAACTTTCTGCAGCATCTG---------------------AA------TCCTGGC------CAGSizeHit CountTotal NormTotal
No Reads
droEug1
TCACGGGCTAGCTACGCTGCTTCAGCAGCCCAGTCCGGTCATCCAGCGTGGTGAGTAGCTCCCA-----ACGGA------GCCCACTG-----------TT------------------------------------------------------AG--ACA----C--A--------TACATATCAAT------------ACAAA----ACACACACATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAG----TCATCC--------------AAGATACTCA------------------C-------------------CCACT----T---C-------TCTACTCTACCGTACTCACATTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG----------------------------AATCGC---------TAGAAGCTTCCCCC------------AGCAACTTTCTTCAGCATCTG---------------------AA------TCCTGGC------CAGSizeHit CountTotal NormTotal
No Reads
dm3
TCACGGGTTGGCTACACTACTTCAGCAGCCTAGTCCTGTGATCCAGCGTGGTGAGTAGCTCCCA-----ATTGA------GCCCACAA-----------TT------------------------------------------------------AG--ACA----C--A--------TACATATCAAT------------ACAAA----ACACACATATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-AAA--------------------------------------CAACTCACAACTCA-----------------------------------ACTCACTTAA----TCATCC--------------AAGATACTTA------------------C-------------------CCACT----A---C-------TCTACTGTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG----------------------------AATCGC---------TAGAAGCTTCCCCC------------AGCAACTTTCTGCAGCATCTG---------------------AA------TACTGGC------CAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................GTCCTGTGATCCAGCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000002000000000000000000000000000000000000000000
..........................AGCCTAGTCCTGTGATCCAGCGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
...............................AGTCCTGTGATCCAGCGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000
..............................TAGTCCTGTGATCCAGCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................CTAGTCCTGTGATCCAGCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CCTGTGATCCAGCGTGGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................ACACATATTAGA--G-CG-ACTCCAGGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................ACTCA-----------------------------------ACTCACTTAA----TCATCC--------------AAGA......................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACCGTACTCACGTTGTGTAAGCTAA....................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TGATCCAGCGTGGTGAGTAGCTCCCA-----AT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CTAGTCCTGTGATCCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................AGCGTGGTGAGTAGCTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................CAGGTGCTGGGTAGG-ACGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCC------------AGCAACTTTCTGCAGCATCTG---------------------AA------................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GCCTAGTCCTGTGATCCAGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTGTGTAAGCTAACC--................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................CTAGTCCTGTGATCCAGCGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TCCTGTGATCCAGCGTGGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..........................AGCCTAGTCCTGTGATCCAGCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................TCCTGTGATCCAGCGTGGTGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................CTAA-AAA--------------------------------------CAACTCACAACTCA-----------------------------------............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GCCTAGTCCTGTGATCCAGCGTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................TCCTGTGATCCAGCGTGGTGAGTAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................TCAGCAGCCTAGTCCTGTGATCCAGCGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG----------------------------AATCGC---------TAGAAGCTTCCCCC------------AGCAAC............................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................AGCCTAGTCCTGTGATCCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TCCTGTGATCCAGCGTGGTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
..........................AGCCTAGTCCTGTGATCCAGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................TTAGA--G-CG-ACTCCAGGTGCTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................AGTCCTGTGATCCAGCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................CAGCAGCCTAGTCCTGTGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TCCTGTGATCCAGCGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCAGCATCTG---------------------AA------TACTGGC------C..2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................CACATATTAGA--G-CG-ACTCCAGGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....................TCAGCAGCCTAGTCCTGTGATCCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTACCGTACTCACGTTGTGTAAGCT......................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTGCAGCATCTG---------------------AA------TACT............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ACTACTTCAGCAGCCTAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................GATCCAGCGTGGTGAGTAGCTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................ATATTAGA--G-CG-ACTCCAGGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................CTACTTCAGCAGCCTAGTCCTGTGATCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........CTACACTACTTCAGCACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCACGGGCTGGCTACGCTGCTCCAGCAGCCTAGTCCGGTGATCCAGCGTGGTGAGTAGCTCCCA-----ATGGA------GCCCACAA-----------TT------------------------------------------------------AG--ACA----C--A--------TACATATCAAT------------ACAAA----ACACACATATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-AAA--------------------------------------CAACTCACAACTCA-----------------------------------ACTCACTCAA----TCATCC--------------AAGATACTTA------------------C-------------------CCACT----A---C-------TCTACTCTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG----------------------------AATCGC---------TAGAAGCTTCCCCC------------AGCAACTTTCTGCAGCATCTG---------------------AA------TACTGGC------CAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGCATCTG---------------------AA------TACTGGC------CT.2411.00100000000000001000
droSec2
TCACGGGCTGGCTACGCTGCTCCAGCAGCCTAGTCCGGTGATCCAGCGTGGTGAGTAGCTCCCA-----ATGGA------GCCCACAA-----------TT------------------------------------------------------AG--ACA----C--A--------TATATATCAAT------------ACAAA----ACACACATATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-AAA--------------------------------------CAACTCACAACTCA-----------------------------------ACTCACTCAA----TCATCC--------------AAGATACTTA------------------C-------------------CCACT----A---C-------TCTACTCTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG----------------------------AATCGC---------TAGAAGCTTCCCCC------------AGCAACTTTCTGCAGCATCTG---------------------AA------TACTGGC------CAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................GCCTAGTCCGGTGATCCAGCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
droYak3
TCATGGGCTGGCTACGCTACTGCAGCAACCTAGTCCGGTCATTCAGCGTGGTGAGTAGCTCCCA-----AAGGA------GCCCATAC-----------GT------------------------------------------------------AG--AGA----C--A--------CACATATCAAA------------ACAAA----ACACACATATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAG-AAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAA----ACAACC--------------AAGATATTTA------------------C-------------------CCACT----A---C-------TCTACTCTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACA---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG----------------------------AATCGC---------TAGAAGCCTCCCCC------------AGCAACTTTCTGCAGCCTCTA---------------------AA------TACTGGC------CAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................GCCCATAC-----------GT------------------------------------------------------AG--AGA----C--A--------CAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...........................ACCTAGTCCGGTCATTCAGCGTGGTGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
droEre2
TCACGGGCTGGCTACACTGCTGCAGCAGCCTAGTCCGGTCATCCAGCGTGGTGAGTAGCTCCCA-----AAGGA------GCCCACAA-----------TT------------------------------------------------------AG--ACA----C--A--------TACATATCAAT------------ACAAA----ACACACATATTAGA--G-CG-ACTCCAGGTGCTGGGTAGG-ACGCTAA-GAA--------------------------------------C--------ACTCA-----------------------------------ACTCACTCAA----TCATCC--------------AAGATACTTA------------------C-------------------CCACT----A---C-------TCTACTCTACCGTACTCACGTTGTGTAAGCTAACC--AAGTAACC---------------------AACCCATCC-----------CCCATGCTGCTCCG------CTCG----------------------------AATCGC---------TAGAAGCCTCTCCC------------AGCAACTTTCTGCAGCATCTG---------------------AA------TACTGGC------CAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCG------CTCG----------------------------AATCGC---------TAG.........................................................................................1911.0010000010
...................CTGCAGCAGCCTAGTCCGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000
..............CACTGCTGCAGCAGCCTAGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
..................................CCGGTCATCCAGCGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
dp5
CCATGGACTGGCGACGCTGCTCCAGCAGCCCAGTCCCGTCATCCAGCGTGGTGAGTAGCATCCGCC-CTA-GGATCCGC-GCCTACAC-----------AT------------------------------------------------------AG--A-----------------------------------------------------TACACATTAGAGAG-CT-ACGCCAGGTGTTGGGTAGA-ACGCTAA-GAA--------------------------------------GAACAC---ACTCATTCACAGA--CACTCAGATACTCAAACACCCAAACACTCACACAC----TCAACCGAAAGATACTCACAAAGATACTCACACACTCAAAGATAC----ATTCCACACTC-----------------------------TCCAGTCAG--------TCGTTGTGTAAGCTAACA-AAAGTAACCAAAGG------------------TCCTTCCCCCCACCCAAATCCATGCTGCTCCT------CTA--CT------------CCGATCTG-CTCTGATCTCTGCTCTGCATAGAAGCCTCCTCG------------AGCAACTTCCTCCAGCAACTG---------------------CA------GCCGAAC------CAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.CATGGACTGGCGACGCTGCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................ACGCCAGGTGTTGGGTAGA-AC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..ATGGACTGGCGACGCTGCTCCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
droPer2
CCATGGACTGGCGACGCTGCTCCAGCAGCCCAGTCCCGTCATCCAGCGTGGTGAGTAGCATCCGCC-CTA-GGATCCGC-GCCTACAC-----------AT------------------------------------------------------AG--A-----------------------------------------------------TACACATTAGAGAG-CT-ACGCCAGGTGTTGGGTAGA-ACGCTAA-GAA--------------------------------------GAACAC---ACTCATTCACAGA--CACCCAAACACTCAAACACCCAAACACTCACACAC----TCAACCGAAAGATACTCACAAAGATACTCACACACTCAAAGATAC----ATTCCACACCC-----------------------------TCCAGTCAG--------TCGTTATGTAAGCTAACA-AAAGTAACCAAAGG------------------TCCTTCCCCCCACCCAAATCCATGCTGCTCCT------CTA--CT------------GCGATCTG-CTCTGATCTCTGCTCTGCATAGAAGCCTCCTCG------------AGCAACTTCCTCCAGCAACTG---------------------CA------GCCGAAC------CAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCATGGCCTGGCCACGCTGCTTCAACAACCAAGCCCAGTTATTCAGCGTGGTGAGTAGGC-----------GAA------GCCAAC-GCTAATTCTTTGCCAGGTGTTTGGGTACAAG-----ACTAAGA-ACTCACACAC------------------ACTCACACACATACATATTTATTCACTGACATATTCACACATAT-------AAACACACA---GA--G-AG-ATAC-------------------------A--------------------------------------------------------------------------------------------------------------------ATCATAAACACACACACA----------------------------------------------------------------CACTGAACAAAAGTTGTGTAAGCTAACC--AAGTAACA---------------------AGTATAAAC-----------CC-TCGACTC--CCAATT----CC-C-ATTTAACATGCT-------------AACCGC---------TAGAAGCTCCAATGAGC---------AACAACTTTCTGCAGCAACAT---------------------CA------GCAGCCA------CAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TCACGGTCTGGCAACGCTGCTGCAGCAGCCCAGTCCGGTTATACAGCGTGGTGAGTAGTT-----------GGA------GCTCC-GGCCA------C-------GCCCAGCCAA--T-----ACACAACCACACACACACAC------------AC--ACA----C--A--------CACACATAGAT------------AC-------ACACTCACATTAGACAC-AC-AGAAATGGTGCTGGGTAGC--TGCTAA-A------------------------------------------------------------------------------------------------------------CGAAAGTAAATAACAATAATAAATACACACACACACACAC----ATGC---------------AC-------ACACAGA-----TCTTG----TCGAGC---TGTTGTGTAAGCTAATCCAAAGTAACT---------------------GAATT---C-----------CCCCTAACCC--CGCATTCGCTC----TTTGAACATGCCG--------------CCGC---------AAAAAGATGCAACTAGCAGCAGCAGTAGCAATTATTTGCA---ACTGCAGCAACAACAACAGCAACAA---------------CATCTGCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..ACGGTCTGGCAACGCTGCTGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000000000000000000000000000000000000000000000000000000000000
....GGTCTGGCAACGCTGCTGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000001000000000000000000000000000
TCACGGTCTGGCAACGCTGCTGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--CGCATTCGCTC----TTTGAACA............................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
...............GCTGCTGCAGCAGCCCAGTCCGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...........CAACGCTGCTGCAGCAGCCCAGTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AAATACACACACACACACAC----A............................................................................................................................................................................................................................................................................................21200.60120012000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAA---------------CATCT....1970.141000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACTGCAGCAACAACAAC................................19200.051000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAACAGCAAC..........................20200.051000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAACAA---------------CAT......19200.051000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACAC----ATGC---------------..........................................................................................................................................................................................................................................................................19200.051000100000000000000000000000000000000000000000000000000000000000
droMoj3
TCATGGGCTGGCAACGCTGCTGCAGCAGCCCAGTCCCGTTATACAGCGTGGTGAGTAGCT-----------GGA------GCTCA-GGCCA------C-------ACCCAACCAA--T-----A------------------CAAAC--------ACAAACACACAC--A--------TGCA-----------------------------TACATACATTAGTCACACT-AAACAAGGTGCTGGGTAGC--TGCTAAAGAAACAGTATATAATATAATATAATATAAATAAAGAGTACAC--------ACTCG---ACAAACACACACGTATACTCA--CACACATACACAGACACAC----TCGA---------ATACATAGAGACACTCATACACA---AGATAGAGA-ATTTGAT---------------------------------TCTCGCTCAC--------TGTTGTGTAAGCTAA---------------------------------------TCC-----------CCCCTATTCCTACGCATTCGCTC----TTTAAACATGCTGCCA---------------------------AAGAACCAACTAGTAGCAGC---AGCAACTATTTGCA---ACTGCAACAACAACAACAACAACAC---------------CAACTGCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACTGCAACAACAACAACAAC.............................22200.051000010
droGri2
TCATGGTCTGGCAACGTTGCTGCAACAGCCCAGTCCCGTTATACAGCGTGGTGAGTAGTAGTTG---------C-----AA-CTACAGTTA------C-------GCCCAGCTAA--TACTACACACAACA-------TGCACAC--------------ACA----C--A--------CACACACAGACACACTCACACATTTAAC----ACACACACACACTT--A-CT---ACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG------TGCCGGG------TAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:48 AM