ID:

dan_3187

 Coordinate:

scaffold_13340:20121254-20121404 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.7 -9.4 -9.4 -9.3

Flybase annnotation

exon [dana_GLEANR_20011:6]; CDS [Dana\GF18754-cds]; intron [Dana\GF18754-in]

Repeatable elements

NameClassFamilyStrand
Hoana8DNAhAT-hobo+
mature
  1. scaffold_12947:250832-250851 +
  2. dan_3187  scaffold_13340:20121298-20121317 +
star
  1. scaffold_6569:216-238 +
  2. scaffold_8076:1320-1342 +
  3. scaffold_8612:4893-4915 +
  4. scaffold_12913:317724-317746 +
  5. scaffold_12947:642205-642227 +
  6. scaffold_12984:46877-46899 +
  7. scaffold_13045:1093821-1093843 +
  8. scaffold_13049:57355-57377 +
  9. scaffold_13082:1623187-1623209 +
  10. scaffold_13082:1961570-1961592 +
  11. scaffold_13111:1228408-1228430 +
  12. scaffold_13230:861009-861031 +
  13. scaffold_13266:4928871-4928893 +
  14. scaffold_13266:17332815-17332837 +
  15. scaffold_13340:10505495-10505517 +
  16. scaffold_13417:6237285-6237307 +
  17. scaffold_13417:6734459-6734481 +
  18. scaffold_13767:883218-883240 +
  19. scaffold_13767:1162861-1162883 +
  20. scaffold_13770:751676-751698 +
  21. scaffold_9246:5885-5907 +
  22. scaffold_12911:2057143-2057165 +
  23. scaffold_12913:14386-14408 +
  24. scaffold_12916:10016691-10016713 +
  25. scaffold_12919:4989-5011 +
  26. scaffold_12928:270735-270757 +
  27. scaffold_12935:74960-74982 +
  28. scaffold_12986:461-483 +
  29. scaffold_13082:812547-812569 +
  30. scaffold_13099:764382-764404 +
  31. scaffold_13165:559401-559423 +
  32. scaffold_13185:15387-15409 +
  33. scaffold_13228:872638-872660 +
  34. scaffold_13248:3637314-3637336 +
  35. scaffold_13250:2937682-2937704 +
  36. scaffold_13250:3185616-3185638 +
  37. scaffold_13266:11549723-11549745 +
  38. dan_3187  scaffold_13340:20121340-20121362 +
  39. scaffold_13417:5897418-5897440 +
  40. scaffold_13770:409119-409141 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACTTGGTACAGATTCTATTTTGGACAAAATAATCTGATTTGCCAAATTTCATTAGGATCGGCCGACTATATACGATCTTCTATATATCTAATAATCTAAGATGCGTGGCGCCACCTAGCGGACTGCGACTGAACTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTAGCTTTCCTGTCTTGTTTTATTCTTAATTAGTGATTGATTCCTGGGGCTCCATTCCCTCTGGTATTTTTACGGGGGATTCC
**********************************************************************************************.....((............(((.((((............)))).)))................))******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V106
head
 V055
head
......................................................................................................................................................................................................TAGTGATTGATTCCTTGGG.................................. 19 1 2 0.50 1 0 0 1 0 0
..............................................................................................TCTAAGATGCGTGGCGCCAC......................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0
........................................................................................................................................CAAGGGTATATCAACTTCGGCTC............................................................................................ 23 0 20 0.30 6 6 0 0 0 0
........................................................................................................GTGGCGCCACCTAGCGGACTGCG............................................................................................................................ 23 0 20 0.25 5 0 0 0 5 0
........................................................................................................GTGGCGCCACCTAGCGGACT............................................................................................................................... 20 0 20 0.20 4 0 0 0 4 0
...............................................................................................CTATGATGCGTGGCGCCACCTAGCGG.................................................................................................................................. 26 1 10 0.10 1 1 0 0 0 0
...TGGTACAGATTCTATTTTGGACAAA............................................................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
...................................................................................................................................................................CGAAGTTAGCTTTCCTGTCTTGT................................................................. 23 0 17 0.06 1 0 1 0 0 0
.......................................................................................................................................................................GTTAGCTTTCCTGTCTTGTTT............................................................... 21 0 17 0.06 1 1 0 0 0 0
....................................................................................................................................................................GAAGTTAGCTTTCCTGTCTTG.................................................................. 21 0 18 0.06 1 0 1 0 0 0
...............................................................................................CTATGATGCGAGGCGCCACCTAGCGG.................................................................................................................................. 26 2 19 0.05 1 1 0 0 0 0
...TGGTACAGATTCTATTTTGGACAAAATAA........................................................................................................................................................................................................................... 29 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................GAACTGCAAGGGTATATCAACTT.................................................................................................. 23 0 20 0.05 1 0 0 1 0 0
...........................................................................................................................TGCGACTGAACTGCAAGGGTA........................................................................................................... 21 0 20 0.05 1 0 0 1 0 0
............................................................GCCGACTATATACGATCTTCTATAT...................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
.......ACAGATTCTATTTTGGACA................................................................................................................................................................................................................................. 19 0 20 0.05 1 0 1 0 0 0
....GGTACAGATTCTATTTTGGACAAA............................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................GTATATCAACTTCGGCTCCGC......................................................................................... 21 0 20 0.05 1 0 0 0 0 1
......................................................................................................GCGTGGCGCCACCTAGCGGACTGCGACT......................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................CGGCTCCGCCCGAAGTTAGC.............................................................................. 20 0 20 0.05 1 1 0 0 0 0
...................................................................................................................TAGCGGACTGCGACTGAACTGC.................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0
........................................................................................................GTGGCGCCACCTAGCGGACTGC............................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
..................................................................................................................CTAGCGGACTGCGACTGAACTGCA................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0
........................................................................................................................GACTGCGACTGAACTGCAAGGGTAT.......................................................................................................... 25 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TGAACCATGTCTAAGATAAAACCTGTTTTATTAGACTAAACGGTTTAAAGTAATCCTAGCCGGCTGATATATGCTAGAAGATATATAGATTATTAGATTCTACGCACCGCGGTGGATCGCCTGACGCTGACTTGACGTTCCCATATAGTTGAAGCCGAGGCGGGCTTCAATCGAAAGGACAGAACAAAATAAGAATTAATCACTAACTAAGGACCCCGAGGTAAGGGAGACCATAAAAATGCCCCCTAAGG
********************************************************************************************.....((............(((.((((............)))).)))................))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body
....................................................................................................................................................................CTTCAATCGAAAGGACAGAACAAAAT............................................................. 26 0 1 1.00 1 1 0 0
...........................................................................................................................................................................CGAAAGGACAGAACAAAAT............................................................. 19 0 1 1.00 1 1 0 0
..............................................................................................................................................................................ATGGACAGAACAAAAGAAGAA........................................................ 21 2 1 1.00 1 1 0 0
.........................................................................................................................................................................................AAAATAAGAATCAAGCACTA.............................................. 20 2 3 0.33 1 0 1 0
...........................................................................................................................................................................CCACAGGACAGAACAAAACAAGA......................................................... 23 3 6 0.17 1 1 0 0
......................................................................................................................................................GAAGCCGAGGCGGGCTTCAATCGAAAGG......................................................................... 28 0 20 0.10 2 2 0 0
...............................................................CTGATATATGCTAGAAGAT......................................................................................................................................................................... 19 0 20 0.10 2 2 0 0
...............................................................................................................................................................................AGGACGGAAGAAAATAAG.......................................................... 18 2 12 0.08 1 1 0 0
........................................................................................................................................................................................................................CCAGTTAAGCGAGACCATA................ 19 3 17 0.06 1 1 0 0
.......................................................................................................................................................................CAATCGAAAGGACAGAACAA................................................................ 20 0 18 0.06 1 1 0 0
...........................................TTTAAAGTAATCCTAGCCGGCTGATA...................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0
...............................................................................................................................................................GCGGGCTTCAATCGAAAGGAC....................................................................... 21 0 20 0.05 1 0 1 0
.........................................................................................................ACCGCGGTGGATCGCCTGACGCTGAC........................................................................................................................ 26 0 20 0.05 1 0 1 0
......................................................................................................................................ACGTTCCCATATAGTTGAAGC................................................................................................ 21 0 20 0.05 1 0 0 1
...............................................AAGTAATCCTAGCCGGCTGATATAT................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:20121204-20121454 + dan_3187 ACTT--GGTACAGATTCTATTTT-----GGACAAAATAATCTGA----TTTGCC----------------------------------------------AAATTTCATT-AGGATCGG--------------------CCGACTATATACGAT-------------CTTCT-------ATATAT-------------------------------------CTAATAATC--------------------------TAAGA---TGCGTGGCGCCACC---------------------------------TAGCGGACTG------CGA---CTGAACTGCAAGGGTATATCAACTTCGGCTCCGCCC-GAAGTTAGCTTTCCT-GTCTTGTTTTATTCTTAAT---------------------T-AGTG-------ATTGATTCCTGGGGCTCCATTCCCTCTGGTATTTT------------------------------------------TACGGG--------------GG---ATTCC
droBip1 scf7180000395506:36669-36897 + ACTT--AGTACATATTCTATTTT-----TGGTCAGCTAATCCAA----CCTGCC----------------------------------------------AAATTTCATT-AGAATCGG--------------------CCGACTATATCCTAT-----------AGCTGCC-------ATAGAACTGAACGATCGG----------------------------------------------------AAATGGTTT----------------------TTCGGTTTGCA--------------ATATA----------------AATCCGATTTTAACTGCAAGGGTATATCAACTTCGGCTCCGCCC-GAAGTTAGCTTTTCT-TTCTTGTTTAATTTTGATT---------------------T-TG-------------TTTCCTAGAGCTC-----------G-------------------------------------------TATTT---------------------------TTA
droKik1 scf7180000301838:1982-2193 - ACTG---TA-ACTGTCA-A----A-CTGTA-----------------------------------------------------------------------AACATAATA-AGTATAGGTAAAATGTAATGAAACTCTGCTTTGTGAGTG-----------TTTTC-----AGCATT--------------------------------------------------------------------------------------------------------TAAATCTATA--------------ATATAAACATCGA-----------AA---CCAATCTGCAAGGGTATATAAACTTCGGC--TTGCC-GAAGTTAGCTT-CCT-TTCTTGTTTTTTGTTATCT---------------------T---CT-------AATGT-----------------TT-----------CC----------TCGTTCTTTTTATACCCTTGCAGGGT-------------------------------ATT
droFic1 scf7180000453932:748897-749149 - ATTTTTGGA-ATATATA-G----TTTTCTTAC-GACT--C----TTGAATTAC-----------GA------------------------------ATT-AAACTTGATC-AAAATTGG--------------------ACAACTATATCATAT-----------AGCTCCC-------ATATGA-------------------------------------TGAAAAATCGTTATAGC-TTCGATGTTGCCT--TT----------------------ATGCATTTTGTT--------------CGACA----------------TATTTGA---TGACTGCAAGGGTATATAAGCTTCGGT--TTGCC-GAAGCTAGCTT-CCT-TTCTTGTTATGATTGCTGT---------------------T-ATTC-------AGACT-----------------AA-----------CT----------------------------------------TTTGGCTGCACTCCGCTTTTTA---ATTCC
droEle1 scf7180000490727:147489-147723 - AAAT--AGC-TATATAA--------------------AATTTGA----GCTGCAAAACATCATAGCTTCATGTTTTTGAACATATACGCAAGTAAATTATAA------------------------------------------------------------TTTT-----A-------ATAT------------------------------------------------------------------------TTTTAAA-AATG----------------------TT--------------T-----------A---ATT--CTTGCAA---TAGCTGCAAAGGTATATGAACTTCGGC--TTGCC-GAAGTTTGCTT-TCT-TTCTTGTTTCGTATATGTTTTTAAACATTGAAGCATTGATTTTAAG-------CTC----------------------------------AATTTTTCGATCGTTTTTTTCAT--------GGGAT-------------------------------TGT
droRho1 scf7180000760683:371-567 - TATG--------GGTTTTATTTT-----TGGCCAATCAATCTGA----CCTGCC----------------------------------------------AAATTTCATA-AGGATCGG--------------------CCGACTATATCCTAT-----------AGCTGCC-------ATATAACTGAACGATTG--------------------------------------------------------------GAAA---TGC----------------------------------CA----TAACTAGCA------------GA---ATATTCTGCAAGGGTATATCAACTTCGGCTCCGCCTAAAGGTTAGCTTTCCT-TTCTTCTTTTTTA-TGATT---------------------T-AGAG-------TTCAA---------------------------------------------------------------------------------------------------TTC
droBia1 scf7180000301211:4601-4854 + ACTT--GGA-AATAACA-T----T-TTTTAAC-ATTT--T----ACAAATTTC-----------GA------------------------------ATA-CAATTTAATA-AAAATCGG--------------------TCTAAAAAAAAATTAAATAATTT---ATTTGTA-------ATATCACTGAAG--TCA--------------------------GCAAGAATCCTTAAAAA-TTT---------------CACA---TGG----TGTTACT--AA------------------------------AGTTGATTT----TTTCTTA---TAACTGCAAGGGTATACAAACTTCGGC--TTGCC-GAAGTTAACTT-CCC-TTCTTGTTTCTTGTATTAA---------------------T-TGTG-------CAT----------------------------------ACTTTTTAGCA-----------------------------CATTTA--------------TG---GGTCC
droTak1 scf7180000412936:18183-18443 - ACTCTT--T-TT--------------------AAATATTT----TCGAATTTC-----------AA------------------------------TTTTAATTTTGATCAAAAATCGG--------------------ACGACTATATCATAT-----------AGCTGCC-------ATAGG----AACGATCGGAAAATTAATGAGAAATATTAGAAAATT------------------G-A----ACAT--TTT----------------------TGCGATTTGTT--------------A---------------ATTAATAGGA---ATGATCTGCAAGGGTATATAAGCTTCGGC--TGGCC-GAAGCTAGCTT-CCT-TTCTTGTTTTCCCATTAAT---------------------T-TCCA-------TTT----------------------------------AATTTTTCGACCGTTCCTATGGCAGCTATATGA--TATAG---------------------------TGA
droEug1 scf7180000409111:41118-41182 + TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAGGGGTATATAAACTTTGGC--TTGCC-GAAGTTAGCTT-CTT-TAATTATTTTGTTGT----------------------------------------------------------------------------------------------------------------------------------------------TAA
dm3 chrX:19477991-19478081 + TCAACT--T-TG--------------------ATGCCATTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGT--TT----------------------ATCCCTTCTATG--------------CGAAG----------------T---------------------------------------------------------------------------------------------------------G-------CTCGACGCGTGGGGCACCATTCCATCGGGATATCT------------------------------------------CATTGG--------------CA---ACCGC
droSim2 2l:20806916-20807131 + TCAT--GGT-TTTGATA-G----T-TTTTAGACAAAATAT-------ATTTTT-----------GA------------------------------TTC-GAATTTGATC-AAAATTGG--------------------ACGACAATATCATAA-----------AGCGAAC-------ATGGGA----ATATTTG------------------------------------ATTTTGTTTTTGATCATAAAT--TG----------------------TTTCGTTTTTTT--------------TCATA----------------AATTAAA---TTTTTGCAAGGGTACATAAGCTTCGGC--TTGCC-GAAGCTAGCTT-CCT-TCCTTGTTTTTTTTATAAC---------------------C-TGTC-------G-------------------------------------------------------------------------------------------------------TTG
droSec2 scaffold_12:2037292-2037378 + AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAAGGGTATACTAGCTTCGGC--TCGAC-GAAGTAAGTTT-T-----CTTGTTTTATTGTTTAT---------------------T-TGCC-------AATGT-----------------AC-----------CC----------------------------------------CCCTGC--------------TG---CGTTC
droYak3 3L:21795842-21795909 + A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAAGGGTATATAAGCTTCGGC--ATGCC-AAGTCTGGCTT-CTT-TCCTTTTTTTTT--TAAAT---------------------T-TGT----------------------------------------------------------------------------------------------------------------TAT
droEre2 scaffold_4820:153891-153954 - A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAAGGGTATATTAGCTTCGGC--TTGCC-AAAACTAGCCT-TCT-TTCTTGTTCTTCGTTAAAT---------------------T-----------------------------------------------------------------------------------------------------------------------
dp5 4_group4:2744417-2744486 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAAAGGTACTAAAACTTTCTG--CACTC-GACGCTAGCTTTCCT-GTCTAGTTTTATTTAGATT---------------------T-ATTG----------------------------------------------------------------------------------------------------------------AT
droPer2 scaffold_2:2314015-2314083 + CGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCCGCAAGGGTATTTCAACTTCGCC--GC-TTGAAGGGTATTTT-TT---GTTTGTTTTTTGTTTGGT--------------------------------------------------------------------------------------------------------------------------------------------T
droWil2 scf2_1100000004909:10791942-10792190 + GTAT-------ATATCTCAGTTT-----AACATAGCTATTAATG----ACTGCT----------------------------------------------AAATTTGATC-AAGATCGG--------------------ATGCCT-TATTATAT-----------AGCTGCC-------ATAAGACAAAG------------------------------------------------------------CCT--TTTTTCAAGTC-GACGGCTATACG--------TAGGGTAGGAAGAGTAA-----------CAA-----------AA---AAAACTTGCAAGGGTATACAAACTTCGGCG-CAGTC-GAAGTTAGTCCCGATCCTCTGGTTTTCTCTTAGTT---------------------T---TTAGTTTCTAGTTT-----------------TT-----------TC----------TAG------------------------------------TTTCTCCTTTCTAGTTTTTCC
droVir3 scaffold_12967:90529-90743 + TCGTAT--G-AA--------------------AAAACATTTTGA----TTATCA------------------------------------------AGA-TATCTTGAAC-AAACTCGG--------------------CATATACTATT-----------TTTCC-----GGTACTTCTTAGA----TAGGAGCAGAGCA---------------------------------------------------------------------------------------------CTATGAGCAT-----------TAT---GAA--AAGGT---TGGGTCTGCAAGGGTATTAGATCTTTGGC--GTGCC-GAAGATAGCCCTTCT-TTCTCGTTTTGTTTTGGTT---------------------T-CGAT-------AATAT-----------------TC-----------CC----------TTT-----------------------------------TATTTTTTTTATTG---TTTTT
droMoj3 scaffold_6482:2029061-2029150 - GCTT--GAG-AATGTAA-A----C-TTTTAACCATATGATCACG----TTCTGA----------------------------------------------AAGTTTCATA-AAGATAGT--------------------CCAACTACAAGAGAT---------------ATT-------ATATAA-------------------------------------CTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA
droGri2 scaffold_14978:942129-942341 + ACAGTT--G-TGCGTGTTATTAT-----GCTCCAAACATTTGGA----T------------------------------------------------T--AAAATTTAAC-GAGATCGC--------------------ATCACTATATCATCA-----------ATCATTT-------TTGGA----AACAATCAGTCCC------------------------------------T-----------------TTTCAGA---TGC----------------------------------CTTC-----------A---ATT--AATTTT---CCGTCTAGAAGGGTATGGCATCTTTGGC--TTTCC-CAAAATAGACGCGCT-TTCCTGTTTGGTTTTTCTT---------------------T-TGTT-------AGTTT-TCCTG------------------------------------GC-------------------ATTCT-------------------------------ATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACTT--GGTACAGATTCTATTTT-----GGACAAAATAATCTGA----TTTGCC----------------------------------------------AAATTTCATT-AGGATCGG--------------------CCGACTATATACGAT-------------CTTCT-------ATATAT-------------------------------------CTAATAATC--------------------------TAAGA---TGCGTGGCGCCACC---------------------------------TAGCGGACTG------CGA---CTGAACTGCAAGGGTATATCAACTTCGGCTCCGCCC-GAAGTTAGCTTTCCT-GTCTTGTTTTATTCTTAAT---------------------T-AGTG-------ATTGATTCCTGGGGCTCCATTCCCTCTGGTATTTT------------------------------------------TACGGG--------------GG---ATTCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................TC--------------------------TAAGA---TGCGTGGCGCCAC.............................................................................................................................................................................................................................................................................2020.501100000
......................................................................................................................................................................................................................................................................................................................................................CAAGGGTATATCAACTTCGGCTC......................................................................................................................................................................................23200.306060000
............................................................................................................................................................................................................................................................................GTGGCGCCACC---------------------------------TAGCGGACTG------CG.........................................................................................................................................................................................................................23200.255000005
............................................................................................................................................................................................................................................................................GTGGCGCCACC---------------------------------TAGCGGACT..................................................................................................................................................................................................................................20200.204000004
...T--GGTACAGATTCTATTTT-----GGACAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102020000
.................................................................................................................................................................................................................................................................................................................................................................................C-GAAGTTAGCTTTCCT-GTCTTGT.........................................................................................................................................................23170.061100000
......................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTCCT-GTCTTGTTT.......................................................................................................................................................21170.061010000
...................................................................................................................................................................................................................................................................................................................................................................................GAAGTTAGCTTTCCT-GTCTTG..........................................................................................................................................................21180.061100000
...T--GGTACAGATTCTATTTT-----GGACAAAATAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051100000
................................................................................................................................................................................................................................................................................................................................................GAACTGCAAGGGTATATCAACTT............................................................................................................................................................................................23200.051001000
................................................................................................................................................................................................................................................................................................................................TG------CGA---CTGAACTGCAAGGGTA.....................................................................................................................................................................................................21200.051001000
......................................................................................................................G--------------------CCGACTATATACGAT-------------CTTCT-------ATAT............................................................................................................................................................................................................................................................................................................................................................................25200.051010000
.........ACAGATTCTATTTT-----GGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
......GGTACAGATTCTATTTT-----GGACAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
...........................................................................................................................................................................................................................................................................................................................................................GTATATCAACTTCGGCTCCGC...................................................................................................................................................................................21200.051000100
..........................................................................................................................................................................................................................................................................GCGTGGCGCCACC---------------------------------TAGCGGACTG------CGA---CT...................................................................................................................................................................................................................28200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................CGGCTCCGCCC-GAAGTTAGC.......................................................................................................................................................................20200.051010000
........................................................................................................................................................................................................................................................................................................................TAGCGGACTG------CGA---CTGAACTGC............................................................................................................................................................................................................22200.051100000
............................................................................................................................................................................................................................................................................GTGGCGCCACC---------------------------------TAGCGGACTG------C..........................................................................................................................................................................................................................22200.051010000
......................................................................................................................................................................................................................................................................................C---------------------------------TAGCGGACTG------CGA---CTGAACTGCA...........................................................................................................................................................................................................24200.051100000
.............................................................................................................................................................................................................................................................................................................................GACTG------CGA---CTGAACTGCAAGGGTAT....................................................................................................................................................................................................25200.051010000
droBip1
ACTT--AGTACATATTCTATTTT-----TGGTCAGCTAATCCAA----CCTGCC----------------------------------------------AAATTTCATT-AGAATCGG--------------------CCGACTATATCCTAT-----------AGCTGCC-------ATAGAACTGAACGATCGG----------------------------------------------------AAATGGTTT----------------------TTCGGTTTGCA--------------ATATA----------------AATCCGATTTTAACTGCAAGGGTATATCAACTTCGGCTCCGCCC-GAAGTTAGCTTTTCT-TTCTTGTTTAATTTTGATT---------------------T-TG-------------TTTCCTAGAGCTC-----------G-------------------------------------------TATTT---------------------------TTASizeHit CountTotal NormTotal
No Reads
droKik1
ACTG---TA-ACTGTCA-A----A-CTGTA-----------------------------------------------------------------------AACATAATA-AGTATAGGTAAAATGTAATGAAACTCTGCTTTGTGAGTG-----------TTTTC-----AGCATT--------------------------------------------------------------------------------------------------------TAAATCTATA--------------ATATAAACATCGA-----------AA---CCAATCTGCAAGGGTATATAAACTTCGGC--TTGCC-GAAGTTAGCTT-CCT-TTCTTGTTTTTTGTTATCT---------------------T---CT-------AATGT-----------------TT-----------CC----------TCGTTCTTTTTATACCCTTGCAGGGT-------------------------------ATTSizeHit CountTotal NormTotal
No Reads
droFic1
ATTTTTGGA-ATATATA-G----TTTTCTTAC-GACT--C----TTGAATTAC-----------GA------------------------------ATT-AAACTTGATC-AAAATTGG--------------------ACAACTATATCATAT-----------AGCTCCC-------ATATGA-------------------------------------TGAAAAATCGTTATAGC-TTCGATGTTGCCT--TT----------------------ATGCATTTTGTT--------------CGACA----------------TATTTGA---TGACTGCAAGGGTATATAAGCTTCGGT--TTGCC-GAAGCTAGCTT-CCT-TTCTTGTTATGATTGCTGT---------------------T-ATTC-------AGACT-----------------AA-----------CT----------------------------------------TTTGGCTGCACTCCGCTTTTTA---ATTCCSizeHit CountTotal NormTotal
No Reads
droEle1
AAAT--AGC-TATATAA--------------------AATTTGA----GCTGCAAAACATCATAGCTTCATGTTTTTGAACATATACGCAAGTAAATTATAA------------------------------------------------------------TTTT-----A-------ATAT------------------------------------------------------------------------TTTTAAA-AATG----------------------TT--------------T-----------A---ATT--CTTGCAA---TAGCTGCAAAGGTATATGAACTTCGGC--TTGCC-GAAGTTTGCTT-TCT-TTCTTGTTTCGTATATGTTTTTAAACATTGAAGCATTGATTTTAAG-------CTC----------------------------------AATTTTTCGATCGTTTTTTTCAT--------GGGAT-------------------------------TGTSizeHit CountTotal NormTotal
No Reads
droRho1
TATG--------GGTTTTATTTT-----TGGCCAATCAATCTGA----CCTGCC----------------------------------------------AAATTTCATA-AGGATCGG--------------------CCGACTATATCCTAT-----------AGCTGCC-------ATATAACTGAACGATTG--------------------------------------------------------------GAAA---TGC----------------------------------CA----TAACTAGCA------------GA---ATATTCTGCAAGGGTATATCAACTTCGGCTCCGCCTAAAGGTTAGCTTTCCT-TTCTTCTTTTTTA-TGATT---------------------T-AGAG-------TTCAA---------------------------------------------------------------------------------------------------TTCSizeHit CountTotal NormTotal
No Reads
droBia1
ACTT--GGA-AATAACA-T----T-TTTTAAC-ATTT--T----ACAAATTTC-----------GA------------------------------ATA-CAATTTAATA-AAAATCGG--------------------TCTAAAAAAAAATTAAATAATTT---ATTTGTA-------ATATCACTGAAG--TCA--------------------------GCAAGAATCCTTAAAAA-TTT---------------CACA---TGG----TGTTACT--AA------------------------------AGTTGATTT----TTTCTTA---TAACTGCAAGGGTATACAAACTTCGGC--TTGCC-GAAGTTAACTT-CCC-TTCTTGTTTCTTGTATTAA---------------------T-TGTG-------CAT----------------------------------ACTTTTTAGCA-----------------------------CATTTA--------------TG---GGTCCSizeHit CountTotal NormTotal
No Reads
droTak1
ACTCTT--T-TT--------------------AAATATTT----TCGAATTTC-----------AA------------------------------TTTTAATTTTGATCAAAAATCGG--------------------ACGACTATATCATAT-----------AGCTGCC-------ATAGG----AACGATCGGAAAATTAATGAGAAATATTAGAAAATT------------------G-A----ACAT--TTT----------------------TGCGATTTGTT--------------A---------------ATTAATAGGA---ATGATCTGCAAGGGTATATAAGCTTCGGC--TGGCC-GAAGCTAGCTT-CCT-TTCTTGTTTTCCCATTAAT---------------------T-TCCA-------TTT----------------------------------AATTTTTCGACCGTTCCTATGGCAGCTATATGA--TATAG---------------------------TGASizeHit CountTotal NormTotal
No Reads
droEug1
TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAGGGGTATATAAACTTTGGC--TTGCC-GAAGTTAGCTT-CTT-TAATTATTTTGTTGT----------------------------------------------------------------------------------------------------------------------------------------------TAASizeHit CountTotal NormTotal
No Reads
dm3
TCAACT--T-TG--------------------ATGCCATTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGT--TT----------------------ATCCCTTCTATG--------------CGAAG----------------T---------------------------------------------------------------------------------------------------------G-------CTCGACGCGTGGGGCACCATTCCATCGGGATATCT------------------------------------------CATTGG--------------CA---ACCGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
TCAT--GGT-TTTGATA-G----T-TTTTAGACAAAATAT-------ATTTTT-----------GA------------------------------TTC-GAATTTGATC-AAAATTGG--------------------ACGACAATATCATAA-----------AGCGAAC-------ATGGGA----ATATTTG------------------------------------ATTTTGTTTTTGATCATAAAT--TG----------------------TTTCGTTTTTTT--------------TCATA----------------AATTAAA---TTTTTGCAAGGGTACATAAGCTTCGGC--TTGCC-GAAGCTAGCTT-CCT-TCCTTGTTTTTTTTATAAC---------------------C-TGTC-------G-------------------------------------------------------------------------------------------------------TTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................TG------------------------------------ATTTTGTTTTTGAT.............................................................................................................................................................................................................................................................................................................1622.50500000000005000000
.................................................................................................................................................................................................TTG------------------------------------ATTTTGTTTTTGAT.............................................................................................................................................................................................................................................................................................................1721.50300000010002000000
....................................................................................................................TGG--------------------ACGACAATATCATAA-----------AGCG..........................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000000000
.........................................................................................................TGATC-AAAATTGG--------------------ACGACAATATCAT...........................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
...................................................................................................................TTGG--------------------ACGACAATATCATAA-----------AGCGAAC-------................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
........................................................................................................................................................................................A----ATATTTG------------------------------------ATTTTGTT...................................................................................................................................................................................................................................................................................................................16100.80800000000008000000
.......................................................................................................................................................................................GA----ATATTTG------------------------------------ATTTTGTT...................................................................................................................................................................................................................................................................................................................1730.67200000000002000000
.................................................................................................................................................................................................TTG------------------------------------ATTTTGTTTTTGA..............................................................................................................................................................................................................................................................................................................1630.33100000001000000000
........................................................................................................................................................................................A----ATATTTG------------------------------------ATTTTGT....................................................................................................................................................................................................................................................................................................................15110.27300000000003000000
..................................................................................................................................................................................................TG------------------------------------ATTTTGTTTTTGA..............................................................................................................................................................................................................................................................................................................1550.20100000000001000000
.............................................................................................................................................................................................ATATTTG------------------------------------ATTTTGTT...................................................................................................................................................................................................................................................................................................................15140.07100000000001000000
.................................................................................................................................................................................................TTG------------------------------------ATTTTGTTTTTG...............................................................................................................................................................................................................................................................................................................15190.05100000000001000000
droSec2
AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAAGGGTATACTAGCTTCGGC--TCGAC-GAAGTAAGTTT-T-----CTTGTTTTATTGTTTAT---------------------T-TGCC-------AATGT-----------------AC-----------CC----------------------------------------CCCTGC--------------TG---CGTTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................GTTT-T-----CTTGTTTTATTGTTTC..............................................................................................................................................2120.5011000
droYak3
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAAGGGTATATAAGCTTCGGC--ATGCC-AAGTCTGGCTT-CTT-TCCTTTTTTTTT--TAAAT---------------------T-TGT----------------------------------------------------------------------------------------------------------------TATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAAGGGTATATTAGCTTCGGC--TTGCC-AAAACTAGCCT-TCT-TTCTTGTTCTTCGTTAAAT---------------------T-----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAAAGGTACTAAAACTTTCTG--CACTC-GACGCTAGCTTTCCT-GTCTAGTTTTATTTAGATT---------------------T-ATTG----------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCCGCAAGGGTATTTCAACTTCGCC--GC-TTGAAGGGTATTTT-TT---GTTTGTTTTTTGTTTGGT--------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GTAT-------ATATCTCAGTTT-----AACATAGCTATTAATG----ACTGCT----------------------------------------------AAATTTGATC-AAGATCGG--------------------ATGCCT-TATTATAT-----------AGCTGCC-------ATAAGACAAAG------------------------------------------------------------CCT--TTTTTCAAGTC-GACGGCTATACG--------TAGGGTAGGAAGAGTAA-----------CAA-----------AA---AAAACTTGCAAGGGTATACAAACTTCGGCG-CAGTC-GAAGTTAGTCCCGATCCTCTGGTTTTCTCTTAGTT---------------------T---TTAGTTTCTAGTTT-----------------TT-----------TC----------TAG------------------------------------TTTCTCCTTTCTAGTTTTTCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................AGATCGG--------------------ATGCCT-TATTATAT-----------AGC...........................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
............................................................................................................................................................................................AG------------------------------------------------------------CCT--TTTTTCAAGTC-GACGGC..................................................................................................................................................................................................................................................................................2211.00100010
......................................................................................................ATTTGATC-AAGATCGG--------------------ATGCCT-TATTAT...........................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
.............................................................................................................................................................................................................................................................................................................................................................ATACAAACTTCGGCG-CAGTC-GAA.............................................................................................................................................................................2311.00100100
.........................................................................................................................................................................................................................................................................C-GACGGCTATACG--------TAGGGTAT............................................................................................................................................................................................................................................................2111.00100010
......................................................................................................................................................................................................................................................................AGTC-GACGGCTATACG--------TAGGGTAGGA..........................................................................................................................................................................................................................................................2611.00110000
.................................................................................................................................................................................................................................................................................TATACG--------TAGGGTAGGAAGAGT.....................................................................................................................................................................................................................................................2111.00100100
.................................................................................................................................................................................................................................................................TTTCAAGTC-GACGGCTATACG--------T...................................................................................................................................................................................................................................................................2211.00100100
........................................................................................................TTGATC-AAGATCGG--------------------ATGCC...................................................................................................................................................................................................................................................................................................................................................................................................................1930.33110000
...........................................................................................................................................................................................................................................................................................................................................................GTATACAAACTTCGGCG-CAGTC-................................................................................................................................................................................2240.25100100
........................................................................................................................................................................................................................................................................................................................................................AGGGTATACAAACTTCGGCG-C.....................................................................................................................................................................................21200.05101000
droVir3
TCGTAT--G-AA--------------------AAAACATTTTGA----TTATCA------------------------------------------AGA-TATCTTGAAC-AAACTCGG--------------------CATATACTATT-----------TTTCC-----GGTACTTCTTAGA----TAGGAGCAGAGCA---------------------------------------------------------------------------------------------CTATGAGCAT-----------TAT---GAA--AAGGT---TGGGTCTGCAAGGGTATTAGATCTTTGGC--GTGCC-GAAGATAGCCCTTCT-TTCTCGTTTTGTTTTGGTT---------------------T-CGAT-------AATAT-----------------TC-----------CC----------TTT-----------------------------------TATTTTTTTTATTG---TTTTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................GCAT-----------TAT---GAA--AAGGT---TGGGTCTGC............................................................................................................................................................................................................24202.204400000000000000000000000001800026000000000000000000000000000000000
..............................................................................................................................................................................ACTTCTTAGA----TAGGAGCAGAGCA---------------------------------------------------------------------------------------------CT...........................................................................................................................................................................................................................................................2511.001000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................TCC-----GGTACTTCTTAGA----TAGGAGC................................................................................................................................................................................................................................................................................................................................................................2311.001000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TTCT-TTCTCGTTTTGTTTTGGTT---------------------T-CGA...................................................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TATGAGCAT-----------TAT---GAA--AAGGT---TGGGTC...............................................................................................................................................................................................................26200.95190000000000000000000000000002000000150200000000000000000000000000
............................................................................................................................................................................................................................................................................................................GCAT-----------TAT---GAA--AAGGT---TGGGTC...............................................................................................................................................................................................................21200.75150000000000000000000030000000012000000000000000000000000000000000
....................................................CA------------------------------------------AGA-TATCTTGAAC-AAACTCGG--------------------CATA....................................................................................................................................................................................................................................................................................................................................................................................................................2740.502100000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAT---GAA--AAGGT---TGGGTCTGCA...........................................................................................................................................................................................................21200.459000000000000000000005000200010100000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TATGAGCAT-----------TAT---GAA--AAGGT---TGGGT................................................................................................................................................................................................................25200.408000100000000000000000000000040000000030000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTGGC--GTG...................................................................................................................................................................................26200.408000000000000000000000000000000000000800000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAT---GAA--AAGGT---TGGGTCTGCAAGGG.......................................................................................................................................................................................................25200.408000000000000400000000000400000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TGAGCAT-----------TAT---GAA--AAGGT---TGGG.................................................................................................................................................................................................................22200.408000000000000000000000000200041100000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AGCAT-----------TAT---GAA--AAGGT---TGGGTCTGC............................................................................................................................................................................................................25200.357000000000000000000000000030000000040000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TGAGCAT-----------TAT---GAA--AAGGT---TGGGTCTGC............................................................................................................................................................................................................27200.306000000000000000000000000000000000000060000000000000000000000000
......................................................................................................................................................................................................................................................................................................CTATGAGCAT-----------TAT---GAA--AAGGT---TGGG.................................................................................................................................................................................................................25200.306000000000000000000000000000033000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAT---GAA--AAGGT---TGGGTCTGCAAGGGT......................................................................................................................................................................................................26200.306001000000000000000000000000000000000050000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TATGAGCAT-----------TAT---GAA--AAGGT---TGGG.................................................................................................................................................................................................................24200.306000000001000000000000000000001000004000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GGGTATTAGATCTTTGGC--GTGCC-................................................................................................................................................................................23200.255000000000040000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAT---GAA--AAGGT---TGGGTCTGC............................................................................................................................................................................................................20200.255000000000000000000005000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTG..........................................................................................................................................................................................21200.204000000000000000000000000000030010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TGGC--GTGCC-GAAGATAGCCCTTCT-TTC.............................................................................................................................................................27200.204000000000000000000000000000000000000000000000000000000000000004
.............................................................................................................................................................................................................................................................................................................................T---GAA--AAGGT---TGGGTCTGCAAGG........................................................................................................................................................................................................22200.153000000000000000000000000000012000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTAGATCTTTGGC--GTGCC-GAAG............................................................................................................................................................................24200.153000000000000000000000000000000000030000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TATGAGCAT-----------TAT---GAA--AAGGT---TGGGTCT..............................................................................................................................................................................................................27200.153000000003000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AT-----------TAT---GAA--AAGGT---TGGGTCTGC............................................................................................................................................................................................................22200.153000003000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTAGATCTTTGGC--GTGCC-G...............................................................................................................................................................................21200.153000000000000000000000000000030000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTGGC--GTGC..................................................................................................................................................................................27200.153000000000000000000000000000000000002010000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TGGGTCTGCAAGGGTATTAGATCT.............................................................................................................................................................................................24200.102000000000000000000000000000000000020000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CAAGGGTATTAGATCTTTGGC--......................................................................................................................................................................................21200.102100000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TATGAGCAT-----------TAT---GAA--AAGGT---TGG..................................................................................................................................................................................................................23200.102002000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CTATGAGCAT-----------TAT---GAA--AAGG.........................................................................................................................................................................................................................20200.102000000000000000000000000000020000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TATGAGCAT-----------TAT---GAA--AAGGT---TG...................................................................................................................................................................................................................22200.102000000000000000000000000020000000000000000000000000000000000000
........................................................................................................................................................................................................A---------------------------------------------------------------------------------------------CTATGAGCAT-----------TAT---GAA--AAGGT---TGG..................................................................................................................................................................................................................25200.102000000000000000000000000000200000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TCTTTGGC--GTGCC-GAAGATAGC.......................................................................................................................................................................22200.102000000000000000000000000000002000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AGCAT-----------TAT---GAA--AAGGT---TGGGTCT..............................................................................................................................................................................................................23200.102000000000000000000000000001000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TAGATCTTTGGC--GTGCC-GAAGATA.........................................................................................................................................................................24200.102000000000000000000000000000000000000020000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TGAGCAT-----------TAT---GAA--AAGGT---TG...................................................................................................................................................................................................................20200.102000002000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................T---GAA--AAGGT---TGGGTCTGCAAGGGT......................................................................................................................................................................................................24200.102000000000000000000000000000000000020000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TGGC--GTGCC-GAAGATAGCCCTTCT-TTCT............................................................................................................................................................28200.102000000000000000000000000010010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................GT---TGGGTCTGCAAGGGTATTAGATC..............................................................................................................................................................................................25200.102000000000000000000000000001000100000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGCC-GAAGATAGCCCTTCT-TTCTCGT.........................................................................................................................................................26200.102000000000000000000000000002000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................AAGGT---TGGGTCTGCAAGGG.......................................................................................................................................................................................................19200.102000000002000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................A---------------------------------------------------------------------------------------------CTATGAGCAT-----------TAT---GAA--AAGGT---TGGG.................................................................................................................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GTCTGCAAGGGTATTAGATCTTTGGC--......................................................................................................................................................................................26200.051000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TCTTTGGC--GTGCC-GAAGATAGCCCTT...................................................................................................................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TCTGCAAGGGTATTAGATCTTTGG.........................................................................................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GCC-GAAGATAGCCCTTCT-TTC.............................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................CA---------------------------------------------------------------------------------------------CTATGAGCAT-----------TAT---GAA--AAGGT---TGG..................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
..................................................ATCA------------------------------------------AGA-TATCTTGAAC-AAACTCGG--------------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000000000000000000000000000001
.................................................................................................................................................................................................................................................................................................................................................GTCTGCAAGGGTATTAGATC..............................................................................................................................................................................................20200.051000000000100000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................GT---TGGGTCTGCAAGGGTATTAGATCT.............................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTAGATCTTTGGC--GTGCC-GA..............................................................................................................................................................................21200.051000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TATGAGCAT-----------TAT---GAA--AAGGT---TGGGTCTG.............................................................................................................................................................................................................28200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GCC-GAAGATAGCCCTTCT-TTCTCG..........................................................................................................................................................24200.051000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CAT-----------TAT---GAA--AAGGT---TGGGTCTGC............................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TGGC--GTGCC-GAAGATAGCCCTTCT-TT..............................................................................................................................................................26200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGCC-GAAGATAGCCCTTCT-TTCTCGTT........................................................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGCC-GAAGATAGCCCTTCT-TTCTCGTTT.......................................................................................................................................................28200.051000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TGGGTCTGCAAGGGTATTAGATCTT............................................................................................................................................................................................25200.051000001000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TGAGCAT-----------TAT---GAA--AAGGT---.....................................................................................................................................................................................................................18200.051000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TTGGC--GTGCC-GAAGATAGCCC.....................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................GAGCAT-----------TAT---GAA--AAGGT---TGG..................................................................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GAA--AAGGT---TGGGTCTGCAAGGGTAT....................................................................................................................................................................................................25200.051000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................GCA---------------------------------------------------------------------------------------------CTATGAGCAT-----------TAT---GAA--AAGGT---.....................................................................................................................................................................................................................24200.051000000000000000000000000000000001000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CAT-----------TAT---GAA--AAGGT---TGGGTCTGCAAG.........................................................................................................................................................................................................26200.051000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TAGATCTTTGGC--GTGCC-GAAG............................................................................................................................................................................21200.051000000000000000000000000000000000001000000000000000000000000000
.................................................................................................GA-TATCTTGAAC-AAACTCGG--------------------CAT.....................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AGCAT-----------TAT---GAA--AAGGT---TGGGTCTGCA...........................................................................................................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAT---GAA--AAGGT---TGGGTCT..............................................................................................................................................................................................................18200.051000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TAGATCTTTGGC--GTGCC-GAAGATAGC.......................................................................................................................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CTATGAGCAT-----------TAT---GAA--AAGGT---TGGGT................................................................................................................................................................................................................26200.051000000000000000000000000000000000000000100000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................GCAAGGGTATTAGATCTTTGGC--GTG...................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TAGATCTTTGGC--GTGCC-GAA.............................................................................................................................................................................20200.051000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................AGCA---------------------------------------------------------------------------------------------CTATGAGCAT-----------TAT---GAA--AAGGT---T....................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................GCAAGGGTATTAGATCTTTGGC--GTGC..................................................................................................................................................................................26200.051000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TGAGCAT-----------TAT---GAA--AAGGT---TGGGTCTG.............................................................................................................................................................................................................26200.051000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ATGAGCAT-----------TAT---GAA--AAGGT---TGGGTC...............................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTAGATCTTTGGC--GTGCC-GAAGATAG........................................................................................................................................................................28200.051000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AGCAT-----------TAT---GAA--AAGGT---TGGGTC...............................................................................................................................................................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................GAGCAT-----------TAT---GAA--AAGGT---TGGGTCT..............................................................................................................................................................................................................24200.051000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GGGTATTAGATCTTTGGC--GTGC..................................................................................................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................GTATTAGATCTTTGGC--GT....................................................................................................................................................................................18200.051000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TGGC--GTGCC-GAAGATAGCCC.....................................................................................................................................................................20200.051000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TGAGCAT-----------TAT---GAA--AAGGT---TGGGT................................................................................................................................................................................................................23200.051000000000000100000000000000000000000000000000000000000000000000
...................................................TCA------------------------------------------AGA-TATCTTGAAC-AAACTCGG--------------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TCTTTGGC--GTGCC-GAAGATAG........................................................................................................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................GCAT-----------TAT---GAA--AAGGT---TGGGTCTGCAA..........................................................................................................................................................................................................26200.051000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................T-----------TAT---GAA--AAGGT---TGGGTCTGCAAGG........................................................................................................................................................................................................25200.051000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AGGGTATTAGATCTTTGGC--GTGC..................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AT---GAA--AAGGT---TGGGTCTGCAA..........................................................................................................................................................................................................21200.051000000010000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CAT-----------TAT---GAA--AAGGT---TGGGTCT..............................................................................................................................................................................................................21200.051010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AT-----------TAT---GAA--AAGGT---TGGGTCTGCAAGGG.......................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
droMoj3
GCTT--GAG-AATGTAA-A----C-TTTTAACCATATGATCACG----TTCTGA----------------------------------------------AAGTTTCATA-AAGATAGT--------------------CCAACTACAAGAGAT---------------ATT-------ATATAA-------------------------------------CTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACAGTT--G-TGCGTGTTATTAT-----GCTCCAAACATTTGGA----T------------------------------------------------T--AAAATTTAAC-GAGATCGC--------------------ATCACTATATCATCA-----------ATCATTT-------TTGGA----AACAATCAGTCCC------------------------------------T-----------------TTTCAGA---TGC----------------------------------CTTC-----------A---ATT--AATTTT---CCGTCTAGAAGGGTATGGCATCTTTGGC--TTTCC-CAAAATAGACGCGCT-TTCCTGTTTGGTTTTTCTT---------------------T-TGTT-------AGTTT-TCCTG------------------------------------GC-------------------ATTCT-------------------------------ATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:41 AM