dan_3181

exon [dana_GLEANR_19991:1]; exon [dana_GLEANR_19991:2]; CDS [Dana\GF18734-cds]; CDS [Dana\GF18734-cds]; intron [Dana\GF18734-in]

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+
(CAG)n	Simple_repeat	Simple_repeat	+

##################################################---------------------------------------------------------------------------------################################################## ACCACCAGACGGCGCACTCGCACCACCACCACCTCCAGCAGCAGCAGTCAGTCCAGCAGCAGCAGCAGCAACCGCCGCAACAAACGCGAACGAACCTCTTGCAGCAGCAGCAGGAACAGCAACAGCAGCAGCAGCAACAGGCCCACGCCCTGTTCGTCCCGAATCACACCGGTCTTCATCA ****************************************************************************................(((.((((....)))).))).........********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V106 head	V039 embryo	V055 head
.............................................AGTCAGTCCAGCAGCAGCAGC...................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
............................CCACATCCAGCAGCAGCAGTCAGTCC...............................................................................................................................	26	1	1	1.00	1	0	0	1	0	0
..............................................................................AACAAACGCGAACGAACCTCTT.................................................................................	22	0	1	1.00	1	0	1	0	0	0
......................................................................................................................GCAACAGCAGCAGCAGCAACATGGCCAC...................................	28	2	1	1.00	1	1	0	0	0	0
...............................................................................................................AGGAACAGCAACAGCAGCAGCAGC..............................................	24	0	1	1.00	1	0	1	0	0	0
...................................................................GGAACCGCCGCAACAAACGCGAACGAACC.....................................................................................	29	1	1	1.00	1	1	0	0	0	0
......................................................................................CGAACGAACCTCTTGCAGCA...........................................................................	20	0	1	1.00	1	0	1	0	0	0
..........GGTGAACTCCCACCACCACCACC....................................................................................................................................................	23	3	4	0.25	1	1	0	0	0	0
......AGACGGAACACGCGCACCAC...........................................................................................................................................................	20	3	4	0.25	1	1	0	0	0	0
..................................................................................AACTCGAACGAACCTTTAGC...............................................................................	20	3	8	0.25	2	0	0	0	0	2
........................................................................................................CAGCAGCAGGAACAGCAAC..........................................................	19	0	5	0.20	1	0	0	0	1	0
................................................................................................................GGAACAGCGACAGCAGCAGC.................................................	20	1	6	0.17	1	1	0	0	0	0
.........................................................................................................................AAAGCAGCAGCAGCAACAGGC.......................................	21	1	8	0.13	1	1	0	0	0	0
................................................................................................................................AAGCACCAACAGGCCCAC...................................	18	2	10	0.10	1	1	0	0	0	0
................................................................................................................GGAATAGCAACAGCAGCAGCAGCC.............................................	24	2	11	0.09	1	0	0	0	1	0
.....................ACTAGCACGACCTCCAGCAGC...........................................................................................................................................	21	3	14	0.07	1	1	0	0	0	0
..............................................................................AACAAACACGCACGAACC.....................................................................................	18	2	14	0.07	1	1	0	0	0	0
............................................................................................................................GCAGCAGCAGCAACAGGC.......................................	18	0	19	0.05	1	1	0	0	0	0
............................................................................................................................GCAGTAGCAGCAACAGGC.......................................	18	1	20	0.05	1	1	0	0	0	0
.......................................................GTAGCAGCAGCAGCAACC............................................................................................................	18	1	20	0.05	1	1	0	0	0	0
..................................................................................................................AACAGCAACAGCAGCAGCAGCA.............................................	22	0	20	0.05	1	0	0	0	1	0
.....................................................................................................................AGCAACAGCAGCAGCAGC..............................................	18	0	20	0.05	1	0	1	0	0	0

TGGTGGTCTGCCGCGTGAGCGTGGTGGTGGTGGAGGTCGTCGTCGTCAGTCAGGTCGTCGTCGTCGTCGTTGGCGGCGTTGTTTGCGCTTGCTTGGAGAACGTCGTCGTCGTCCTTGTCGTTGTCGTCGTCGTCGTTGTCCGGGTGCGGGACAAGCAGGGCTTAGTGTGGCCAGAAGTAGT ********************************************************................(((.((((....)))).))).........****************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	M044 female body	V055 head	V105 male body
......................GGTGGTGGTGGAGGTCGT.............................................................................................................................................	18	0	2	1.00	2	2	0	0	0
..............................................................................................................................TGGTCTTCGTTGTCAGGGTGC..................................	21	3	12	0.42	5	0	3	0	2
.................................................................................................................................TCTTCGTTGTCAGGGTGC..................................	18	2	10	0.20	2	0	1	1	0
..............................................................................................................................TCGTCGACATTGTCCGGGTTC..................................	21	3	10	0.10	1	0	0	1	0
.........................................................................................................................................................AGCTGGGCGTAGTGTGGTC.........	19	3	16	0.06	1	0	0	0	1
.............................................................................................................................................GGGACCGGGACAAGCAGG......................	18	2	18	0.06	1	0	0	1	0
.................AGCGTGGTGGGAGTGGACGT................................................................................................................................................	20	3	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13340:19888367-19888547 +	dan_3181	ACCACCAGACGGC---GCACTCGC------ACCACCACCACCTCCAGCAGCAG---CAG-----------------------------------------TCAGTCCAGCA----GCAGCAGC------------AGCA------ACCGCCGCAACAAACGCGAAC-------------------------------------G--AACCTCTTGCAGCAGCAGCAGGAAC---AGC------------------------AACAGCAGCAGCAG------C---AA---------------------------------------CAGGCCCACGCCCTGTTCGTCCCGAATCACACCGGTCTTCATCA
droBip1	scf7180000396413:2503835-2504009 -		ACCACCAGACGGC---GCACTCGC------ACCACCACCACCTCCAGCAGCAA---CAA--------------------------------------TCAGTAGTCCAGCA----GCAG------------------------------CCGCCCCAAACGAGAAC-------------------------------------G--AACCTCTTGCAGCAGCAGCAGGAAC---AGC------------------------AGCAGCAGCAGCAA---CAGC---AG---------------------------------------CAGGCTCACGCGCTGTTCGTCCCGAACCACACCGGTCTTCATCA
droKik1	scf7180000302461:894294-894459 -		ACCACCAGACGGC---GCACTCGC------ACCACCATCACCTGCAGCAGCAG---CAG-----------------------------CAACAGCAGCA----------------GCAGCAAC------------AACA------GCAGCAGCAGCAGGTGCGCAG-------------------------------------C--AATCTCCTTC------------------------------------------------ACCAACAGGAG------CAACAGCA------------G------------------------GCCGCCCACGCATTGTTTGTTCCAAACCACAGCGGTCTCCATCA
droFic1	scf7180000453800:1816990-1817135 -		-----------------CACTCGC------ACCACCATCATATCCAGCAGCAA---CAAC-AGCAG----------------------CAGCAGC----------------------AGCAGC------------AGCA------ACAACAACAGCAGGTT------------------------------------------------------C---AACAA---CAAC---AGC------------------------AGCAGCAGCAACAA------C---AA---------------------------------------CAGGCACACGCTCTGTTTGTACCGAACCACGGCGGTCTTCACCA
droEle1	scf7180000486474:701527-701725 -		ACCATCAGACGGC---GCACTCGC------ACCACCATCACCTCCAGCAGCAG---C--------------------------------ATCAGCAACAGGCAGTTCAGCA----ACAG---CAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGGTGCGGAG-------------------------------------T--AGTATCCTGC---ACCAGCAGCAAC---------------------------------ACCAGGAGCAG------C---AGCA------------G------------------------GCGGCCCACGCCCTGTTTGTCCCGAATCACAGCGGCCTACACCA
droRho1	scf7180000777713:9027-9198 +		ACCACCAGACGGC---GCACTCGC------ACCACCATCACCTCCAGCAGCAG---CAG-----------------------------CAACAGCAACAGGCAGTTCAACA----ACAG------------------------------CAGCAGCAGGTGCGGAG-------------------------------------T--AGTATCCTGC---ACCAGCAGCAAC---------------------------------AACAGGAGC------------AGCA------------G------------------------GCAACCCACGCACTGTTTGTCCCGAACCACAGCGGCCTACACCA
droBia1	scf7180000302075:5201083-5201224 -		ACCACCAGGCGGCGGCGCACTCGC------ATCACCATCACCTCCAGCAACAG---CAG-CAGCAG---C----A------------GCAACAACAGCAGACAGCG-------------------------------------------------------------------------------------------------------------C---AACAA---------------------------------------CAACAGCAGCAG------C---AG---------------------------------------CAGTCGCACGCGCTGTTCGTCCCGAACCACAGCGGTCTACACCA
droTak1	scf7180000415765:1276632-1276770 +		ACCACCAGGCGGC---GCACTCGC------ATCACCATCACCTCCAGCCGCAT---CAG-CAGCAG---C----A------------GCAGCAACAACAGACAGCT-------------------------------------------------------------------------------------------------------------C---AGCAG---------------------------------------CAGCAACAGCAG------C---AG---------------------------------------CAACCCCACGCGCTGTTCGTCCCGAACCACGGCGGTCTGCACCA
droEug1	scf7180000409466:603493-603660 -		ACCAGCAGCAACA---ACACGCCC------AGCAGCAACATCAGCAGCAGCAG---CAG----CAA----CAACA------------GCAGCAGCAGCAGCAGCAGCAG-------------------------------------------CA------------CTG---GGACTAC----------------TATGCCAG-----------GC---AGCAGCAGCAAC---ATC------------------------AACAGCAGCAGCAGCAACAGC------------------------------------------------AACAGCCAGCGGCCGCCACCAGCAACA-------CCAACG
dm3	chr2L:20689356-20689513 -		ACCACCAACACCA---TAACCACC------TCCTCCATCAGCAGCATCACAACCAGCAGC----AG---C----A---------GCAGCAGCAGCAACA---GCAAC-------------------------AACAACAGCAGCA---------------------------------------------------------------------GCAGCAGCAGCAGGAAC---ATC---------------------TGCAACAGCAACACCAG------C---AA---------------------------------------CAG--------CTTGTGAGCCCCCAGCAACACCTGCTT------
droSim2	3r:20469374-20469542 +		ACCAGCAGTCGCATCAGCAGCCGC------ATCAGCACCAACATCAGCAGCAT---CAGC-AGCAG----------------------CATCAGCAGCA------TCAGCA----ACAC---CAGC------AACACCAACAGCA---------------------------------------------------------------------CCAGCAACATCAGCAAC---ATC------------------------TGCACCAGCAGCAG------C------------------------------------------------AACAGGCAAACTTTCTCCACATCCAGCAGTCGCTACAACA
droSec2	scaffold_12:317418-317604 -		AGCAACAGCAGAC---GCAAGTGC------ACCACCAGACGCAGCAGCAACAGCAGC-------AGCACC----A------------CCAC------ACAGCAGCGCAGCA----CTAC---------------------------------CA------------CCA---CAGCCAC----------------CAGACAGCG--CACCACCAGCAACAGCAGCAGCAGC---ACC------------------------ACCAGCAGCAGCAA------C---AG---------------------------------------CAGGCACAGCAGCAGCACCTGAGCCACCAACACCACCATCATCA
droYak3	2R:15826807-15826976 +		ACCACCAGCTCCG--AGCATCCGCATCCGCACCAGCACCA------CCAGCAG---CAC-----------------------------CAACAGCACCACGCCCACCTGCA----CC-----------------------------------CAGCACACGCCCAC-------------------------------------GGAAA------CCAGCAGCAACAGCAAC---AGC------------------------AACAGCAGCAGCAG------C---AGCAGGTCCAGCACCAC---------CACAGCCAC------CAGGC--------------------------G-CACTTCCATCA
droEre2	scaffold_4770:7894292-7894475 +		AGCAGCAGTCGCA---GCACCAGC------AGCAACATCTAATGCCGCAGCAA---CAT-----------CGCCCATCGCCGCAGCAGCAGCAGCAACA-------------------------------------------------------------------CTCGCAGCAATTC----------------GCAGCCAG-----------GC---AGCAG------C---AGC------------------------AACAGCAGCATCAG------C---AGCAGGCGCAGCAATCGTACCACGCGCAGATCCACCAACAGCC--------------------GCAGCAA----CATCCGCATCC
dp5	2:12892024-12892246 -		ACCACCAGACGGC---GCATTCGGCGC---ACCACCATCACCTCCACCAGCAG---CAGC----AG---C----A------------GCAACAGCAGCAAGCGGTCCAGCA----GCAG---C------------AGCA------GCAACAACAGCA---------GACGC-GGAACACACTGTTGCATCACCCTTCGACGCT-----------GC---AGCAGCAGCAAC---AGC---------------AGATTCCCCAACAGCAGGACCCA------C---AG---------------------------------------CAGGCGCACGCACTGTACGTCACCAATCACAGCAACCTTCATCC
droPer2	scaffold_0:7564592-7564817 +		ACCACCAGACGGC---GCATTCGGCGC---ACCACCATCAGCTCCACCAGCAG---CAG--------------------------------------CAAGCGGTCCAGCA----GCAGCAGC------------AGCA------GCAGCAACAGCA---------GACGC-GGAACACACTGTTGCATCACCCTTCGACGCT-----------GC---AGCAGCAGCAAC---AGCAGATTCCCCAACAGCAGATTCCTCAACAGCAGGACCCA------C---AG---------------------------------------CAGGCCCACGCACTGTACGTCACCAATCACAGCAACCTTCATCC
droWil2	scf2_1100000004902:6527710-6527887 +		TCCATCAGACGGC---GCAATCAC------ACCACCACCACCACCTACAACAA---CAG-CAGCAG---C----A------------ACAACAACAACAACA-------------------AC------------AGCA------GCAGCAGCAACA---------GTCGC-GCATTTCT--------------------------------CTAC---AGCAGCAGCAGC---------------------------------------AGCAA------G---TGCAAGCTCA------A------------------------CAGGATCACACGGTGTTTGTGCCCAATCACAATAATATCCACCA
droVir3	scaffold_13561:126535-126706 +		AGCAGCAGCAGCA---GCAGCCGC------AGCAGCAGCAGCCGCAGCAGCAGCCGCAGC----AG---C----A------------GCAGCAGCAACAGCAGCCGCAG--CAGC-----------------AGCAGCAGCAACA---------------------------------------------------------------------GCAGCCGCAGCAGCAGC---------------------------------------AGCAG------C---------------AACAGCAGCAGCAGCAGCAGCATCAACAGCA---ACA--------------GCAACATCAG-CATCAACAGCA
droMoj3	scaffold_6473:11064650-11064818 -		AGCAGCAGCAGCA---GCAGCAGC------AGCAGCAGCAGCAGCAGCAGCAGCAGCAGC----AG---C----A------------GCAGCAGCAGCAACAGCAGCAG--CAGC-----------------AACAGCAGCAGCA---------------------------------------------------------------------GCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAG--------------------------------------------------------------------------------CAGCAACAG-CAGCAGCAACA
droGri2	scaffold_14664:1425-1596 -		AGCAGCGGCAGCG---GCAGCGGC------AGCAGCAGCAGCAGCAGCGGCAGCAGCAGC----AG---C----A------------GCAGCAGCAGCAGCAGCAGCAG--CAGC-----------------AGCAGCAGCAGCA---------------------------------------------------------------------GCAGCAGCAGCAGCAGC---AGC---------------------------AGCAGCAGCAG------C---AG---------------------CAGCAG------------CAGCATCA-GCAGCGGC----AGCAGCAGCAG-CAGCGGCAGCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

ACCACCAGACGGC---GCACTCGC------ACCACCACCACCTCCAGCAGCAG---CAG-----------------------------------------TCAGTCCAGCA----GCAGCAGC------------AGCA------ACCGCCGCAACAAACGCGAAC-------------------------------------G--AACCTCTTGCAGCAGCAGCAGGAAC---AGC------------------------AACAGCAGCAGCAG------C---AA---------------------------------------CAGGCCCACGCCCTGTTCGTCCCGAATCACACCGGTCTTCATCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................AG-----------------------------------------TCAGTCCAGCA----GCAGCAGC------------...........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................AACAAACGCGAAC-------------------------------------G--AACCTCTT............................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................AGGAAC---AGC------------------------AACAGCAGCAGCAG------C---.....................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................CGAAC-------------------------------------G--AACCTCTTGCAGCA......................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................CAGCAGCAGGAAC---AGC------------------------AAC..........................................................................................................	19	5	0.20	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................GCAGCAGCAG------C---AA---------------------------------------CAGGC.......................................	18	19	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................AAC---AGC------------------------AACAGCAGCAGCAG------C---A....................................................................................	22	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................AGC------------------------AACAGCAGCAGCAG------C---.....................................................................................	18	20	0.05	1	1	0	0	0	0	0

droBip1

ACCACCAGACGGC---GCACTCGC------ACCACCACCACCTCCAGCAGCAA---CAA--------------------------------------TCAGTAGTCCAGCA----GCAG------------------------------CCGCCCCAAACGAGAAC-------------------------------------G--AACCTCTTGCAGCAGCAGCAGGAAC---AGC------------------------AGCAGCAGCAGCAA---CAGC---AG---------------------------------------CAGGCTCACGCGCTGTTCGTCCCGAACCACACCGGTCTTCATCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACCACCAGACGGC---GCACTCGC------ACCACCATCACCTGCAGCAGCAG---CAG-----------------------------CAACAGCAGCA----------------GCAGCAAC------------AACA------GCAGCAGCAGCAGGTGCGCAG-------------------------------------C--AATCTCCTTC------------------------------------------------ACCAACAGGAG------CAACAGCA------------G------------------------GCCGCCCACGCATTGTTTGTTCCAAACCACAGCGGTCTCCATCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-----------------CACTCGC------ACCACCATCATATCCAGCAGCAA---CAAC-AGCAG----------------------CAGCAGC----------------------AGCAGC------------AGCA------ACAACAACAGCAGGTT------------------------------------------------------C---AACAA---CAAC---AGC------------------------AGCAGCAGCAACAA------C---AA---------------------------------------CAGGCACACGCTCTGTTTGTACCGAACCACGGCGGTCTTCACCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACCATCAGACGGC---GCACTCGC------ACCACCATCACCTCCAGCAGCAG---C--------------------------------ATCAGCAACAGGCAGTTCAGCA----ACAG---CAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGGTGCGGAG-------------------------------------T--AGTATCCTGC---ACCAGCAGCAAC---------------------------------ACCAGGAGCAG------C---AGCA------------G------------------------GCGGCCCACGCCCTGTTTGTCCCGAATCACAGCGGCCTACACCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACCACCAGACGGC---GCACTCGC------ACCACCATCACCTCCAGCAGCAG---CAG-----------------------------CAACAGCAACAGGCAGTTCAACA----ACAG------------------------------CAGCAGCAGGTGCGGAG-------------------------------------T--AGTATCCTGC---ACCAGCAGCAAC---------------------------------AACAGGAGC------------AGCA------------G------------------------GCAACCCACGCACTGTTTGTCCCGAACCACAGCGGCCTACACCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACCACCAGGCGGCGGCGCACTCGC------ATCACCATCACCTCCAGCAACAG---CAG-CAGCAG---C----A------------GCAACAACAGCAGACAGCG-------------------------------------------------------------------------------------------------------------C---AACAA---------------------------------------CAACAGCAGCAG------C---AG---------------------------------------CAGTCGCACGCGCTGTTCGTCCCGAACCACAGCGGTCTACACCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACCACCAGGCGGC---GCACTCGC------ATCACCATCACCTCCAGCCGCAT---CAG-CAGCAG---C----A------------GCAGCAACAACAGACAGCT-------------------------------------------------------------------------------------------------------------C---AGCAG---------------------------------------CAGCAACAGCAG------C---AG---------------------------------------CAACCCCACGCGCTGTTCGTCCCGAACCACGGCGGTCTGCACCA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACCAGCAGCAACA---ACACGCCC------AGCAGCAACATCAGCAGCAGCAG---CAG----CAA----CAACA------------GCAGCAGCAGCAGCAGCAGCAG-------------------------------------------CA------------CTG---GGACTAC----------------TATGCCAG-----------GC---AGCAGCAGCAAC---ATC------------------------AACAGCAGCAGCAGCAACAGC------------------------------------------------AACAGCCAGCGGCCGCCACCAGCAACA-------CCAACG	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACCACCAACACCA---TAACCACC------TCCTCCATCAGCAGCATCACAACCAGCAGC----AG---C----A---------GCAGCAGCAGCAACA---GCAAC-------------------------AACAACAGCAGCA---------------------------------------------------------------------GCAGCAGCAGCAGGAAC---ATC---------------------TGCAACAGCAACACCAG------C---AA---------------------------------------CAG--------CTTGTGAGCCCCCAGCAACACCTGCTT------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................CATCACAACCAGCAGC----AG---C----A---------GCAGC.........................................................................................................................................................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCACAACCAGCAGC----AG---C----A---------GCAGCA........................................................................................................................................................................................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ACC------TCCTCCATCAGCAGCA....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................AGCATCACAACCAGCAGC----AG---C----A---------GCA...........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCACAACCAGCAGC----AG---C----A---------GCAGC.........................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AACAGCAACACCAG------C---AA---------------------------------------CAG--------C................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................ACAACAGCAGCA---------------------------------------------------------------------GCAGCAGC....................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................A---GCAAC-------------------------AACAACAGCAGCA---------------------------------------------------------------------GC..........................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................CA---GCAAC-------------------------AACAACAGCAGCA---------------------------------------------------------------------GCAGT.......................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACCAGCAGTCGCATCAGCAGCCGC------ATCAGCACCAACATCAGCAGCAT---CAGC-AGCAG----------------------CATCAGCAGCA------TCAGCA----ACAC---CAGC------AACACCAACAGCA---------------------------------------------------------------------CCAGCAACATCAGCAAC---ATC------------------------TGCACCAGCAGCAG------C------------------------------------------------AACAGGCAAACTTTCTCCACATCCAGCAGTCGCTACAACA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................ACAC---CAGC------AACACCAA......................................................................................................................................................................................................................................	16	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AGCAACAGCAGAC---GCAAGTGC------ACCACCAGACGCAGCAGCAACAGCAGC-------AGCACC----A------------CCAC------ACAGCAGCGCAGCA----CTAC---------------------------------CA------------CCA---CAGCCAC----------------CAGACAGCG--CACCACCAGCAACAGCAGCAGCAGC---ACC------------------------ACCAGCAGCAGCAA------C---AG---------------------------------------CAGGCACAGCAGCAGCACCTGAGCCACCAACACCACCATCATCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................................................A------------CCA---CAGCCAC----------------CAGACAGCG--C...................................................................................................................................................................	21	1	1.00	1	0	0	0	1
................................................................................................................................................................................CAC----------------CAGACAGCG--CACCACCAGC..........................................................................................................................................................	22	1	1.00	1	0	0	1	0
..CAACAGCAGAC---GCAAGTGC------A...................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
.....................TGC------ACCACCAGACGCAGCA....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................AA------C---AG---------------------------------------CAGGCACAGCAGCA..............................	19	2	0.50	1	0	0	1	0

droYak3

ACCACCAGCTCCG--AGCATCCGCATCCGCACCAGCACCA------CCAGCAG---CAC-----------------------------CAACAGCACCACGCCCACCTGCA----CC-----------------------------------CAGCACACGCCCAC-------------------------------------GGAAA------CCAGCAGCAACAGCAAC---AGC------------------------AACAGCAGCAGCAG------C---AGCAGGTCCAGCACCAC---------CACAGCCAC------CAGGC--------------------------G-CACTTCCATCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................................................................AGCAGCAGCAG------C---AGCAGGTC.............................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AGC------------------------AACAGCAGCAGCAG------C---.....................................................................................	18	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................GCAGCAACAGCAAC---AGC------------------------AACA.........................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AGCAAC---AGC------------------------AACAGCAGCA...................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AAC---AGC------------------------AACAGCAGCAGCAG------C---AGCAG................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................AC---AGC------------------------AACAGCAGCAGCAG------C---AGC..................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AAC---AGC------------------------AACAGCAGCAGCA................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

AGCAGCAGTCGCA---GCACCAGC------AGCAACATCTAATGCCGCAGCAA---CAT-----------CGCCCATCGCCGCAGCAGCAGCAGCAACA-------------------------------------------------------------------CTCGCAGCAATTC----------------GCAGCCAG-----------GC---AGCAG------C---AGC------------------------AACAGCAGCATCAG------C---AGCAGGCGCAGCAATCGTACCACGCGCAGATCCACCAACAGCC--------------------GCAGCAA----CATCCGCATCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................AGCAA---CAT-----------CGCCCATCGCCGCAGC............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................CGCAGCAATTC----------------GCAGCCAG-----------GC---AGCAG------C---........................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................AG-----------GC---AGCAG------C---AGC------------------------AACAGCA......................................................................................................	20	5	0.20	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................C---AGC------------------------AACAGCAGCATCAG------C---.....................................................................................	19	14	0.14	2	0	0	0	0	1	1	0
..........................................................................................................................................................................................................................................AGC------------------------AACAGCAGCATCAG------C---.....................................................................................	18	14	0.07	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................GCAG------C---AGC------------------------AACAGCAGCATC.................................................................................................	20	15	0.07	1	0	1	0	0	0	0	0

dp5

ACCACCAGACGGC---GCATTCGGCGC---ACCACCATCACCTCCACCAGCAG---CAGC----AG---C----A------------GCAACAGCAGCAAGCGGTCCAGCA----GCAG---C------------AGCA------GCAACAACAGCA---------GACGC-GGAACACACTGTTGCATCACCCTTCGACGCT-----------GC---AGCAGCAGCAAC---AGC---------------AGATTCCCCAACAGCAGGACCCA------C---AG---------------------------------------CAGGCGCACGCACTGTACGTCACCAATCACAGCAACCTTCATCC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................A------------GCAACAGCAGCAAGCGGTCC.......................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................A---------GACGC-GGAACACACTGTTGC.......................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................G---------------------------------------CAGGCGCACGCACTGTACGTCACC....................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................GCA---------GACGC-GGAACACACTGTTGCATCA...................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TCCCCAACAGCAGGACCCA------.........................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................GACGC-GGAACACACTGTTG........................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................A---------GACGC-GGAACACACTGTT.........................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................CAACAGCAGCAAGCGGTCCAGCA----...............................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GAACACACTGTTGCATCACCCTT..............................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................CAAGCGGTCCAGCA----GCAG---C------------AGCA------GCAAC............................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................AAGCGGTCCAGCA----GCAG---C------------AGCA------GCAACA...........................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................CAGGCGCACGCACTGTACGTCACC....................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................A----GCAG---C------------AGCA------GCAACAACAG.......................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................CA----GCAG---C------------AGCA------GCAACAACA........................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

ACCACCAGACGGC---GCATTCGGCGC---ACCACCATCAGCTCCACCAGCAG---CAG--------------------------------------CAAGCGGTCCAGCA----GCAGCAGC------------AGCA------GCAGCAACAGCA---------GACGC-GGAACACACTGTTGCATCACCCTTCGACGCT-----------GC---AGCAGCAGCAAC---AGCAGATTCCCCAACAGCAGATTCCTCAACAGCAGGACCCA------C---AG---------------------------------------CAGGCCCACGCACTGTACGTCACCAATCACAGCAACCTTCATCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................GCATCACCCTTCGACGCT-----------GC---.......................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................AGC------------AGCA------GCAGCAACAGC......................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0

droWil2

TCCATCAGACGGC---GCAATCAC------ACCACCACCACCACCTACAACAA---CAG-CAGCAG---C----A------------ACAACAACAACAACA-------------------AC------------AGCA------GCAGCAGCAACA---------GTCGC-GCATTTCT--------------------------------CTAC---AGCAGCAGCAGC---------------------------------------AGCAA------G---TGCAAGCTCA------A------------------------CAGGATCACACGGTGTTTGTGCCCAATCACAATAATATCCACCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................................................................................................................GCTCA------A------------------------CAGGATCACACGGTT.............................	21	1	1.00	1	0	1	0	0	0
TCCATCAGACGGC---GCAATC............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................A------A------------------------CAGGATCACACGGTGTT...........................	19	1	1.00	1	0	0	0	1	0
..............................................................................................CAACAACA-------------------AC------------AGCA------GCAGC............................................................................................................................................................................................................................	19	20	0.30	6	0	0	0	6	0
.....................................................................................................A-------------------AC------------AGCA------GCAGCAGCAACA---------GTC.........................................................................................................................................................................................................	22	5	0.20	1	0	0	0	1	0
...........................................................................................CAACAACAACA-------------------AC------------AGCA------GCAGC............................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	3	0
.....................................................................................................................................................................................................................TAC---AGCAGCAGCAGC---------------------------------------AGCAA------.........................................................................................	20	8	0.13	1	0	0	0	1	0
...........................................................................................................................................................................................................................AGCAGCAGCAGC---------------------------------------AGCAA------G---T....................................................................................	19	20	0.10	2	0	0	0	1	1
...............................................................................................AACAACA-------------------AC------------AGCA------GCAGCAGC.........................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	2	0
..............................................................................................CAACAACA-------------------AC------------AGCA------GCAGCAG..........................................................................................................................................................................................................................	21	20	0.10	2	0	1	0	1	0
....................................................................................................CA-------------------AC------------AGCA------GCAGCAGCAAC......................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	2	0
....................................................................................................CA-------------------AC------------AGCA------GCAGCAGCAACA---------GT..........................................................................................................................................................................................................	22	11	0.09	1	0	0	0	0	1
.........................................................................................AACAACAACAACA-------------------AC------------AGCA------.................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1
...................................................AA---CAG-CAGCAG---C----A------------ACAAC......................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
...........................................................................................CAACAACAACA-------------------AC------------AGCA------GCAGCAGC.........................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..................................................................................................AACA-------------------AC------------AGCA------GCAGCAGCAACA---------............................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
...................................................AA---CAG-CAGCAG---C----A------------ACAACAAC...................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
............................................................................................AACAACAACA-------------------AC------------AGCA------GCAGC............................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0
.................................................................................................CAACA-------------------AC------------AGCA------GCAGCAGCAAC......................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0
.....................................................................................................A-------------------AC------------AGCA------GCAGCAGCAACA---------............................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
...............................................................................................AACAACA-------------------AC------------AGCA------GCAGCAGCA........................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
..............................................ACAACAA---CAG-CAGCAG---C----A------------ACAACA.....................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.....................................................................C----A------------ACAACAACAACAACA-------------------AC------------AGCA------GCAGC............................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	1	0
............................................................................................AACAACAACA-------------------AC------------AGCA------GCAGCAGCAA.......................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
..................................................CAA---CAG-CAGCAG---C----A------------ACAACAACAAC................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.............................................................AGCAG---C----A------------ACAACAACAACAACA-------------------AC------------A..........................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..........................................................................................ACAACAACAACA-------------------AC------------AGCA------GCAGCAGCA........................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0

droVir3

AGCAGCAGCAGCA---GCAGCCGC------AGCAGCAGCAGCCGCAGCAGCAGCCGCAGC----AG---C----A------------GCAGCAGCAACAGCAGCCGCAG--CAGC-----------------AGCAGCAGCAACA---------------------------------------------------------------------GCAGCCGCAGCAGCAGC---------------------------------------AGCAG------C---------------AACAGCAGCAGCAGCAGCAGCATCAACAGCA---ACA--------------GCAACATCAG-CATCAACAGCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................CGCAGC----AG---C----A------------GCAGCAGCA..................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AGC---------------------------------------AGCAG------C---------------AACAGCAGCA...............................................................	19	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................GCAGCAACAGCAGCCGCAG--CAGC-----------------..............................................................................................................................................................................................................................................	23	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GCAGCAACA---------------------------------------------------------------------GCAGCCGCAGCAGC..............................................................................................................................................	23	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CGC------AGCAGCAGCAGCCGCAGCA.................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAGCAGCATCAACAC............................................	28	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................C------AGCAGCAGCAGCCGCAGCAG................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GCCGCAG--CAGC-----------------AGCAGCAGCA....................................................................................................................................................................................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GCCGCAGCAGCAGC---------------------------------------AGCAG------C---------------A........................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCATC.................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GCAG------C---------------AACAGCAGCAGCAGCA.........................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CAGCAGCCGCAGCAGCAGCCG..........................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................AG---C----A------------GCAGCAGCAACAGCAGCCGC.......................................................................................................................................................................................................................................................................	24	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................AGC-----------------AGCAGCAGCAACA---------------------------------------------------------------------GCAGCCGC....................................................................................................................................................	24	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................CCGCAGCAGCAGCCGCAGC----AG---C----........................................................................................................................................................................................................................................................................................................	22	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GCAGCAACA---------------------------------------------------------------------GCAGCCGCAGC.................................................................................................................................................	20	19	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................GCAGCAACAGCAGCCGCAG--C..................................................................................................................................................................................................................................................................	20	19	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GCAG------C---------------AACAGCAGCAGCAGCAGCA......................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................G---C----A------------GCAGCAGCAACAGCAGC..........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAG--CAGC-----------------AGCAGCAGCAACA---------------------------------------------------------------------GCAGC.......................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................GCAACA---------------------------------------------------------------------GCAGCCGCAGCAGC..............................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....GCAGCAGCA---GCAGCCGC------AGC.................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GCCGCAGCAGCAGC---------------------------------------AGCAG------C---------------AAC......................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CGCAGCAGCAGCCGCAGC----AG---.............................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GC-----------------AGCAGCAGCAACA---------------------------------------------------------------------GCAGC.......................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................C---------------AACAGCAGCAGCAGCAGCAGCAT..................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AGCCGCAGCAGCAGCCGCAGC----..................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CAGCA---GCAGCCGC------AGCAGCAG............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................GCAGC----AG---C----A------------GCAGCAGCAACAGCA............................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................CCGCAGCAGCAGCCGCAGC----AG---.............................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGCAGCAGC---------------------------------------AGCAG------C---------------AACAGCAGCAGCA............................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAGCCGCAGCAGCAGCCG..........................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCAGCAGCAGCCGCAGC----AG---C----A------------GCAGC......................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GCAGCCGCAGC----AG---C----A------------GCAGCAGCA..................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCAGCAGCAGC---------------------------------------AGCAG------C---------------AACAGCA..................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCA......................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGCAT..................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCAGCAGCAGCCGCAGC----AG---C----A------------GCAGCA.....................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GCCGCAGC----AG---C----A------------GCAGCAGCAAC................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AGCAGCAACA---------------------------------------------------------------------GCAGCCGCA...................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GCCGCAG--CAGC-----------------AGCAGCAGCAAC..................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCAGCAGCAGC---------------------------------------AGCAG------C---------------AACAGC...................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................CAGC----AG---C----A------------GCAGCAGCAACAGCAGC..........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GCAGCAGCAGCCGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................CAGCAGCCGCAG--CAGC-----------------AGCAG.........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAGCAGCA...................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GCAG------C---------------AACAGCAGCAGCAGCAGCAGCA...................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................G---C----A------------GCAGCAGCAACAGCAGCC.........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................AGCAGCCGCAGCAGCAGCC...........................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAGCCGCAGCAGCAGCCGCAG.......................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................AGCAG------C---------------AACAGCAGCAGC.............................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCAGCAGCAGCA---GCAGCCGC------AG..................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GCAG--CAGC-----------------AGCAGCAGCAACA---------------------------------------------------------------------GCA.........................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AGCAGCA---GCAGCCGC------AGCAGC..............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................GCAGC----AG---C----A------------GCAGCAGCAACAGC.............................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GC-----------------AGCAGCAGCAACA---------------------------------------------------------------------GCAGCC......................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GCAG--CAGC-----------------AGCAGCAGCAACA---------------------------------------------------------------------GC..........................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CAGCAGCAGC---------------------------------------AGCAG------C---------------AACAGCAGC................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GCAGCA---GCAGCCGC------AGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AGC---------------------------------------AGCAG------C---------------AACAGCAGCAGCAGCAGCA......................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCATCA................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................CAGCAGCAGCCGCAGC----AG---C----A------------G..........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................GCAGCAGCATCAACAGCA---.......................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................GCAACAGCAGCCGCAG--CAGC-----------------..............................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................AGCAGCAACAGCAGCCGCA......................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CA---------------------------------------------------------------------GCAGCCGCAGCAGCAGC---------------------------------------AG..................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCAGC....................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GCAGC---------------------------------------AGCAG------C---------------AACAGCAGC................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CAG------C---------------AACAGCAGCAGCAGCA.........................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................AGCAG------C---------------AACAGCAGCAGCAGCAGC.......................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCAGCAGCAGCA---GCAGCAGC------AGCAGCAGCAGCAGCAGCAGCAGCAGCAGC----AG---C----A------------GCAGCAGCAGCAACAGCAGCAG--CAGC-----------------AACAGCAGCAGCA---------------------------------------------------------------------GCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAG--------------------------------------------------------------------------------CAGCAACAG-CAGCAGCAACA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................................................................................................AACAGCAG--------------------------------------------------------------------------------CAGCAACAG-CA.........	19	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................G--------------------------------------------------------------------------------CAGCAACAG-CAGCAGCAA..	19	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................GCAACAGCAG--------------------------------------------------------------------------------CAGCAACAG-CAGCAGCA...	27	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GCAG--------------------------------------------------------------------------------CAGCAACAG-CAGCAGCAAC.	23	20	0.05	1	0	0	0	0	1	0
..........................................................................................GCAGCAGCAACAGCAGCA......................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
................................................................................................GCAACAGCAGCAG--CAGC-----------------AACA..........................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
................................................................AG---C----A------------GCAGCAGCAGCAACAGCAGCA......................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................GCAGCAGCAACAGCAG--------------------------------------------------------------------------------CAGCAAC..............	23	20	0.05	1	0	0	0	0	1	0

droGri2

AGCAGCGGCAGCG---GCAGCGGC------AGCAGCAGCAGCAGCAGCGGCAGCAGCAGC----AG---C----A------------GCAGCAGCAGCAGCAGCAGCAG--CAGC-----------------AGCAGCAGCAGCA---------------------------------------------------------------------GCAGCAGCAGCAGCAGC---AGC---------------------------AGCAGCAGCAG------C---AG---------------------CAGCAG------------CAGCATCA-GCAGCGGC----AGCAGCAGCAG-CAGCGGCAGCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................................................................................................CAGCAG--CAGC-----------------AGCAGCAGC.....................................................................................................................................................................................................................................	19	20	0.25	5	5	0
..........................................................................A------------GCAGCAGCAGCAGCAGCAGCAG--CA.................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0
......................................................................................................................................................................................................................................................................................................................................................C----AGCAGCAGCAG-CAGCGGCA...	20	20	0.05	1	0	1

dan_3181

scaffold_13340:19888417-19888497 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-6.6	-6.4	-6.3