ID:

dan_3175

 Coordinate:

scaffold_13340:19285779-19285929 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.0 -17.6 -17.6

Flybase annnotation

CDS [Dana\GF18705-cds]; exon [dana_GLEANR_19961:1]; intron [Dana\GF18705-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACAAAAGCGAACTCGAAGATGCCCGTATGCCGCCTTCGTCGTCGGTTGGGTGCGAAAGATATAGATTCTTTTATATACACACCGCTCCTGCTGCTTCAGTGTCCGATTAATCGCTTTCTGAAATAATATATTATATATTCGCAAACGGAAAGCTAAAAAACGGGGGAAAAAAACGGTCACTACTAAGTAAGCCGCGTCGCGACAAGTCGAAAGTGAATTTCGTGGCGAATGCTAATTTTTCAAGTGCGCA
*********************************************************************************************.........((((.......((((((((....((((((...))))))......)))))))).......)))).........((((.(((....)))..))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 V106
head
 M058
embryo
 V055
head
 V039
embryo
.............................................................................................GCTTCAGTGTCCGATTAAT........................................................................................................................................... 19 0 1 2.00 2 0 0 2 0 0 0
....................................................................................GCTCCTGCTGCTTCAGTGTCCGATT.............................................................................................................................................. 25 0 1 2.00 2 1 0 1 0 0 0
.....................................................................................................................................................................................TACTAAGTAAGCCGCGTCGCG................................................. 21 0 1 1.00 1 0 0 0 0 1 0
......................................................................................TCCTGCTGCTTCAGTGTCCGA................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................CTACTAAGTAAGCCGCGTCGC.................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................ACTACTAAGTAAGCCGCGTC.................................................... 20 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................TACTAAGTAAGCCGCGTCGCGACAAG............................................ 26 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................GACAAGTCGAAAGTGAATTTCGT........................... 23 0 1 1.00 1 0 1 0 0 0 0
......................................................................................TCCTGCTGCTTCAGTGTCCGATTAAT........................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................GGTCACTACTAAGTAAGCCGCGTCGC.................................................. 26 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................AAGTGAATTTCGTGGCGAATGCTAATT............. 27 0 1 1.00 1 1 0 0 0 0 0
.....................................CGTCGTCGGTTGGGTGCG.................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................................................TACTAAGTAAGCCGCGTCGCGACAA............................................. 25 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................ATCCGCGTCGCGACAAGTCGAC....................................... 22 2 1 1.00 1 0 0 0 1 0 0
....................................................................................................................................................................................CTACTAAGTAAGCCGCGTCGCGACA.............................................. 25 0 1 1.00 1 0 1 0 0 0 0
........................CTTATGCCGCCTTCGTCGTC............................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0
................................GCCTTCGTCGTCGGTTGG......................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0
...................................TTCGTCGTCGGTTGGGTG...................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................TCGAAAGTGAACTTCGTGGCTG...................... 22 3 3 0.33 1 0 0 0 0 1 0
......................................................................................................................................................................GAAAAAAACGGTCACCACA.................................................................. 19 2 3 0.33 1 0 0 0 1 0 0
..................................................GAGCGAAAGTTATAGATTC...................................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 1
............................................................................................................................................................AAAAACGGGAGAAAAAAAC............................................................................ 19 1 6 0.17 1 0 1 0 0 0 0
......................................................................TTTATATACACAGCGTACCT................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 1 0 0
.........................................................................................................................................................................AAAAAAGGTCAGTACTAAGTT............................................................. 21 3 15 0.07 1 0 0 0 0 1 0
............................................................................................................................................................AAAAACGGGGGAAAGAGA............................................................................. 18 2 20 0.05 1 1 0 0 0 0 0
...................................................................................CGCTCCTTCGGGTTCAGTG..................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................GGGGCAAAACAGGGTCACT..................................................................... 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TTGTTTTCGCTTGAGCTTCTACGGGCATACGGCGGAAGCAGCAGCCAACCCACGCTTTCTATATCTAAGAAAATATATGTGTGGCGAGGACGACGAAGTCACAGGCTAATTAGCGAAAGACTTTATTATATAATATATAAGCGTTTGCCTTTCGATTTTTTGCCCCCTTTTTTTGCCAGTGATGATTCATTCGGCGCAGCGCTGTTCAGCTTTCACTTAAAGCACCGCTTACGATTAAAAAGTTCACGCGT
**************************************************.........((((.......((((((((....((((((...))))))......)))))))).......)))).........((((.(((....)))..))))......********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 V106
head
 V039
embryo
 V055
head
.....................................................................................................................................................................................................AGCGCTGTTCAGCTTTCACTT................................. 21 0 1 2.00 2 2 0 0 0 0
..............................GGCGGAAGCAGCAGCCAACCC........................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
..........TTGAGCTTCTACGGGCATACGG........................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0
.............AGCTTCTACGGGCATACGGCG......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
..................................................CACGCTTTCTATATCTAAGAA.................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.............................................................................................................TTAGCGAAAGACTTTATTATA......................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
..................CTACGGGCATACGGCGGAAGC.................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.................TCCATGGGCATACGGCGCA....................................................................................................................................................................................................................... 19 3 3 0.33 1 0 0 0 1 0
..............................GGCGGAAGCACTAGCCAA........................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1
.............AGCTTCAACGGGCATGCTG........................................................................................................................................................................................................................... 19 3 5 0.20 1 0 0 1 0 0
.................................................................................................................TGAAAGAGTTTATTATAT........................................................................................................................ 18 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:19285729-19285979 + dan_3175 AACAAAAGCGAACTCG---AAGATGCCC------GTATGCCGCCTTC-GTCGTCGGTTGGGTGC-GAAAGATATA--GA-TTCTTTTATATACACAC-CGC------TCCTGC--------------------TG--CTT-CAGT-----GTCCGATT----AATCGCT-TTCTGAA----ATAAT-----ATATTAT----------ATATTCGCAAACGGAAA--------------------G------C-T------------AAAAAACG--GGGG--AAAA----------------------AAACGGTCACTACTAAG-TAAGC------CGCGTCG-------------CGACAAGTCGAAAGTG-----AATTT-CGTGGCG-----------AATGCTAATTTTTC----AAGTGCGCA
droBip1 scf7180000396413:3080845-3081119 - AACAAAAGCGAACTCG---AAGATGCCC------GTATGCCGCCTTC-GTCGTCGGTTGGGTGC-AAAAGATATA--GA-TTCTTTTATATACACAC-CGC------TCCTGCTACTGTCTC-----------TG--ATA-TAGAACGCAGTCCGATT----AATCGGT-TTTTTTTTGACAAAAAAAGAAATATT-TGCAAA----------------CGAAAC--------------------G------G-TACGGAACGGTCA--A--------GTGAAAAAA----------------------AAAGC---GCAACCAAA-AAAGC------CGC--CG--CCAACCAAGTACA---AGTTGAAGT-G-----AATTT-CGTGGCG-----------AATGCTAATTTTTC----AAGTGCGCA
droKik1 scf7180000302697:675199-675448 - AATGAAAAAAATATCGCCACATTTG-CC------GTATGCCGCCTTC-GTCGTCGGTTGGGTGC-A-AAGATATA--GAAATCTT-TATATACACTC----------------------C-------------TG--ATA-TAGAACGCT-------TTATCGGTCGGT-CCCTAAA--------------ATATTCTGCAAGC--------------TCGAAACAAAGCAAAA------------------C-C--------GCAA--A--------TTG----------AAATCCGAA---------AAAGC---GCAGCTAAAT-AAGC------CGAGC-A-------------CC--GAATCGAGGCTG------TTTTTCGTGGCGATTATTATTCGAATGCAAATT-TTC----AAGTGCGCA
droFic1 scf7180000453826:309362-309583 + --------------------AGTTG-CC------GTATGCCGCCTTC-GTCGTCTGTTGGGTGC-AAAAGATATA--GAAATCTTTTATACACATAC------A------CTC----GCC-------------TG--ATA-TAGAACGCAAT----------CGTCGGTATTTTAAT--------------ATATTCTGCAGCT---------------CGAAA--------AAAAT-AAT--------------------------ATAAACCGAAG--T--AACC----------------------AAAAC---GCAACTTAACAAAGC------CGAGT-G-------------CA--AAATTCAAGCCA-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCA
droEle1 scf7180000491261:1896496-1896683 - --------------------------CC------GTATGCCGCCTTG-CTCGTCGGTTGGGTGC-AAAAGATAAA--GAAAT---TTATATACGCGC----------------------T-------------TG--ATA-TAGAACGC-------------TGTCGGT-TTTTAAA--------------TTATTCTGCAGAC--------------CCGAAA-------------------------------------------------------------------------------------AAATT---GCAACTAAACAAAGCCCTCGTCGAGT-GTA-----------AA--AAATTCAAGCCA------ATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCA
droRho1 scf7180000767320:9416-9621 - -----------------CACAGTTG-CC------GTATGCCGCCTTG-GTCGTCGGTTGGGTGC-AAAAGATATA--GAAATCTTTTATATACACAC------A------C------GCC-------------TG--ATA-TAGAACGC-------------AGTCAGT-TTTTAAT--------------ATATTCTGCAGGC---------------CAAA------------------------------------------------------------AAAA----------------------AAATC---GCAACTAAACAAAGCTCTCGTCGAGT-GTA-----------AA--AAATTCAAGCCA-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCA
droBia1 scf7180000302075:1521185-1521402 + ---------------------------C------GTATGCCGCCTTC-GTCGTCGGTTGGGTGC-AAAAGATATA--GAAATCTTTTAAATACACACACACACA------TAC----------------------------------AC-------------AGTCGGT-TTTTAAT--------------ATATTCTGCAGCC----------------GAAA-------AAAAATCAAAA-A-ATCCAATCCC--------CAAAA-A----G----A----------GCAAAACGAA---------AAAAC---GCAACTAAACAAAGC------CGAGT-G-------------CA---AATTCAAGCCA-----GATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCA
droTak1 scf7180000413872:284082-284320 - AATGAAAAAAATATCGCCACAGTTG-CC------GTATGCCGCCTTC-GTCGTCGGTTG-GTGG-AAAAGATATA--GAAATCTTTTATATACACAC------A------GTC----------------------------------G------GTTC----AGTCGGT-TTTTAAT--------------ATATTCTGCAGCCTTAAAAA------------------------ATCCAAA-A-AT-CAAACCC--------GAAAAAA----G----------------AATAACGCA---------AAAGC---GCAACTAAACAAAGC------CGAGT-G-------------CA--AAATTCAAGCCAC----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCA
droEug1 scf7180000409770:888660-888894 - --------------------------CC------GTATGCCGCCTTC-GTCGTCGGTTGGGTGC-AAAAGATATA--GAAATCTTTTATATACACATACACACACGCC--T------GCC-------------TGATATA-TAGAACGC-------------AGTCGGT-TTTTAAT--------------ATATTCTGCAGCC---------------CGAG------AAAAAAAT-AATCAAATCCAAAACCC--------GAA----------------------------------AAATTAAAGAAAAC---GCAACTAAACAAAGC------CGAGT-G-------------CA--AAATTCAAGCCA-----AATTTACAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCA
dm3 chr3R:23406795-23406997 - --------------------AGTTG-CC------GTATGCCGCCTTC-GTCGTCGGTT----GC-AAAAGATATA--GAAATCTTTTATATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-TTTTAAT--------------AAATTCTGCAGCG---AAAA----------------------------------TTCCAAGCCC--------GAATAAA----GAAGGAG--AAAT----------------------AAAAG---GCAACTAAACAAAGC------CGAGT-G-------------CA--AAATTAAAGCCA-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCA
droSim2 3r:22831564-22831766 - --------------------AGTTG-CC------GTATGCCGCCTTC-GTCGTCGGTT----GC-AAAAGATATA--GAAATCTTTTATATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-TTTTAAT--------------AAATTCTGCAGCG---AAAA----------------------------------TTCCAAGCCC--------GAATAAA----GAAGGAG--AATC----------------------AAAAG---GCAACTAAACAAAGC------CGAGT-G-------------CA--AAATTAAAGCCA-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCA
droSec2 scaffold_22:40314-40516 - --------------------AGTTG-CC------GTATGCCGCCTTC-GTCGTCGGTT----GC-AAAAGATATA--GAAATCTTTTATATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-TTTTAAT--------------AAATTCTGCAGCG---AAAA----------------------------------TTCCAAGCCC--------GAATAAA----GAAGGAG--AAAT----------------------AAAAG---GCAACTAAACAAAGC------CGAGT-G-------------CA--TAATTAAAGCCA-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCA
droYak3 3R:23081199-23081400 + --------------------AGTTG-CC------GTATGCCGCCTTC-GTCGTCGGTT----GC-AAAAGATATA--GAAATCTTTTATATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-TTTTAAT--------------AAATTCTGCAGCG---AAAA----------------------------------TTTCAAGCCC--------GAACA-A----GAAGGAG--AAAT----------------------AAAAC---GCAACTAAACAAAGC------CGAGT-G-------------CA--AAATTAAAGCCG-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCA
droEre2 scaffold_4820:4630877-4631081 + -----------------CACAGTTG-CC------GTATGCCGCCTTC-GTCGTCGGTT----GC-AAAAGATATA--GAAATCTTTTATATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-TTTTAAT--------------AAATTCTGCAGCG---AAAA----------------------------------TTCCAAGCCC--------GAACA-A----GAAGGAG--AAAT----------------------AAAGC---GCAACTAAACAAAGC------CGAGT-G-------------CA--AAATTAAAGCCA-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCA
dp5 2:9055925-9056169 - AAAAA----TATATCGTCTCAGTTG-CCGTATGCGTATGCCGCCTTCGGTCGTCGGTT----TT-AAAAGATATA--GAAATCTTCTATACCTCCACACACTC-CACAC--------TC-TCTACCCGCCGCCGC--ATAGTAGAGCGCAATCTGTTT----AATCGGT-CTT-AAC--------------------AGCAGAG-------------------------CAAAATATCAAGTAAATC--A--CTC--------AAATC-----------A----------GAA-------ATACAAAAG--AA-------------------------------------------TA---CCAGTAGCAAA-----TAAAT--TCGTGGTG-----------AATGCAAATTTTTC----AAGTGCGCA
droPer2 scaffold_0:2869008-2869251 - AAAAA-----AAATCGTCTCAGTTG-CCGTATGCGTATGCCGCCTTCGGTCGTCGGTT----TT-AAAAGATATA--GAAATCTTCTATACCTCCACACACTC-CACAC--------TC-TCTACCCGCCGCCGC--ATAGTAGAGCGCAATCTGTTT----AATCGGT-CTT-AAC--------------------AGCAGAG-------------------------CAAAATATCAAGTAAATC--A--CCC--------AAATC-----------A----------GAA-------ATACAAAAG--AA-------------------------------------------TA---CCAGTAGCAAA-----TAAAT--TCGTGGTG-----------AATGCAAATTTTTC----AAGTGCGCA
droWil2 scf2_1100000004902:3644209-3644408 - --------------------------CC------GTACGCCGCTGTC-GCCGTCGGTTGGGTGCAAAAAGATATAAAGAAATCTTTTGTACACATACACAAACAAACAT--------TCT-------------TGAAATA-TAGAACGC-------------AATCTGT-TTT--------------------ATCAC----------AAAA------TCGAAA----------------AGGAATC--G--A------------A------------------AAAAAAGAAAAAC--------------------------------------------AT-A-------------AA--AAATTAACGCAAAAATTGATT----TGCTA-----------AATGCAAAATTGTTGAAAAAGTGCGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AACAAAAGCGAACTCG---AAGATGCCC------GTATGCCGCCTTC-GTCGTCGGTTGGGTGC-GAAAGATATA--GA-TTCTTTTATATACACAC-CGC------TCCTGC--------------------TG--CTT-CAGT-----GTCCGATT----AATCGCT-TTCTGAA----ATAAT-----ATATTAT----------ATATTCGCAAACGGAAA--------------------G------C-T------------AAAAAACG--GGGG--AAAA----------------------AAACGGTCACTACTAAG-TAAGC------CGCGTCG-------------CGACAAGTCGAAAGTG-----AATTT-CGTGGCG-----------AATGCTAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................G--CTT-CAGT-----GTCCGATT----AAT.........................................................................................................................................................................................................................................................................1912.002000002
...................................................................................................GC------TCCTGC--------------------TG--CTT-CAGT-----GTCCGATT----............................................................................................................................................................................................................................................................................2512.002100001
...............................................................................................................................................................................................................................................................................................................................TACTAAG-TAAGC------CGCGTCG-------------CG......................................................................2111.001000100
...........................................................................................................TCCTGC--------------------TG--CTT-CAGT-----GTCCGA..................................................................................................................................................................................................................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................................CTACTAAG-TAAGC------CGCGTCG-------------C.......................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................ACTACTAAG-TAAGC------CGCGTC......................................................................................2011.001000010
...............................................................................................................................................................................................................................................................................................................................TACTAAG-TAAGC------CGCGTCG-------------CGACAAG.................................................................2611.001100000
.......................................................................................................................................................................................................................................................................................................................................................................GACAAGTCGAAAGTG-----AATTT-CGT..........................................2311.001000010
...........................................................................................................TCCTGC--------------------TG--CTT-CAGT-----GTCCGATT----AAT.........................................................................................................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................................................GGTCACTACTAAG-TAAGC------CGCGTCG-------------C.......................................................................2611.001000010
.................................................................................................................................................................................................................................................................................................................................................................................AAGTG-----AATTT-CGTGGCG-----------AATGCTAATT.................2711.001100000
..............................................C-GTCGTCGGTTGGGTGC-G............................................................................................................................................................................................................................................................................................................................................................................1811.001000001
...............................................................................................................................................................................................................................................................................................................................TACTAAG-TAAGC------CGCGTCG-------------CGACAA..................................................................2511.001000010
..............................................................................................................................................................................................................................................................................................................................CTACTAAG-TAAGC------CGCGTCG-------------CGACA...................................................................2511.001000010
.........................................GCCTTC-GTCGTCGGTTGG..................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
............................................TTC-GTCGTCGGTTGGGTG...............................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droBip1
AACAAAAGCGAACTCG---AAGATGCCC------GTATGCCGCCTTC-GTCGTCGGTTGGGTGC-AAAAGATATA--GA-TTCTTTTATATACACAC-CGC------TCCTGCTACTGTCTC-----------TG--ATA-TAGAACGCAGTCCGATT----AATCGGT-TTTTTTTTGACAAAAAAAGAAATATT-TGCAAA----------------CGAAAC--------------------G------G-TACGGAACGGTCA--A--------GTGAAAAAA----------------------AAAGC---GCAACCAAA-AAAGC------CGC--CG--CCAACCAAGTACA---AGTTGAAGT-G-----AATTT-CGTGGCG-----------AATGCTAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotal
No Reads
droKik1
AATGAAAAAAATATCGCCACATTTG-CC------GTATGCCGCCTTC-GTCGTCGGTTGGGTGC-A-AAGATATA--GAAATCTT-TATATACACTC----------------------C-------------TG--ATA-TAGAACGCT-------TTATCGGTCGGT-CCCTAAA--------------ATATTCTGCAAGC--------------TCGAAACAAAGCAAAA------------------C-C--------GCAA--A--------TTG----------AAATCCGAA---------AAAGC---GCAGCTAAAT-AAGC------CGAGC-A-------------CC--GAATCGAGGCTG------TTTTTCGTGGCGATTATTATTCGAATGCAAATT-TTC----AAGTGCGCASizeHit CountTotal NormTotal
No Reads
droFic1
--------------------AGTTG-CC------GTATGCCGCCTTC-GTCGTCTGTTGGGTGC-AAAAGATATA--GAAATCTTTTATACACATAC------A------CTC----GCC-------------TG--ATA-TAGAACGCAAT----------CGTCGGTATTTTAAT--------------ATATTCTGCAGCT---------------CGAAA--------AAAAT-AAT--------------------------ATAAACCGAAG--T--AACC----------------------AAAAC---GCAACTTAACAAAGC------CGAGT-G-------------CA--AAATTCAAGCCA-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotal
No Reads
droEle1
--------------------------CC------GTATGCCGCCTTG-CTCGTCGGTTGGGTGC-AAAAGATAAA--GAAAT---TTATATACGCGC----------------------T-------------TG--ATA-TAGAACGC-------------TGTCGGT-TTTTAAA--------------TTATTCTGCAGAC--------------CCGAAA-------------------------------------------------------------------------------------AAATT---GCAACTAAACAAAGCCCTCGTCGAGT-GTA-----------AA--AAATTCAAGCCA------ATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotal
No Reads
droRho1
-----------------CACAGTTG-CC------GTATGCCGCCTTG-GTCGTCGGTTGGGTGC-AAAAGATATA--GAAATCTTTTATATACACAC------A------C------GCC-------------TG--ATA-TAGAACGC-------------AGTCAGT-TTTTAAT--------------ATATTCTGCAGGC---------------CAAA------------------------------------------------------------AAAA----------------------AAATC---GCAACTAAACAAAGCTCTCGTCGAGT-GTA-----------AA--AAATTCAAGCCA-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotal
No Reads
droBia1
---------------------------C------GTATGCCGCCTTC-GTCGTCGGTTGGGTGC-AAAAGATATA--GAAATCTTTTAAATACACACACACACA------TAC----------------------------------AC-------------AGTCGGT-TTTTAAT--------------ATATTCTGCAGCC----------------GAAA-------AAAAATCAAAA-A-ATCCAATCCC--------CAAAA-A----G----A----------GCAAAACGAA---------AAAAC---GCAACTAAACAAAGC------CGAGT-G-------------CA---AATTCAAGCCA-----GATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotal
No Reads
droTak1
AATGAAAAAAATATCGCCACAGTTG-CC------GTATGCCGCCTTC-GTCGTCGGTTG-GTGG-AAAAGATATA--GAAATCTTTTATATACACAC------A------GTC----------------------------------G------GTTC----AGTCGGT-TTTTAAT--------------ATATTCTGCAGCCTTAAAAA------------------------ATCCAAA-A-AT-CAAACCC--------GAAAAAA----G----------------AATAACGCA---------AAAGC---GCAACTAAACAAAGC------CGAGT-G-------------CA--AAATTCAAGCCAC----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotal
No Reads
droEug1
--------------------------CC------GTATGCCGCCTTC-GTCGTCGGTTGGGTGC-AAAAGATATA--GAAATCTTTTATATACACATACACACACGCC--T------GCC-------------TGATATA-TAGAACGC-------------AGTCGGT-TTTTAAT--------------ATATTCTGCAGCC---------------CGAG------AAAAAAAT-AATCAAATCCAAAACCC--------GAA----------------------------------AAATTAAAGAAAAC---GCAACTAAACAAAGC------CGAGT-G-------------CA--AAATTCAAGCCA-----AATTTACAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotal
No Reads
dm3
--------------------AGTTG-CC------GTATGCCGCCTTC-GTCGTCGGTT----GC-AAAAGATATA--GAAATCTTTTATATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-TTTTAAT--------------AAATTCTGCAGCG---AAAA----------------------------------TTCCAAGCCC--------GAATAAA----GAAGGAG--AAAT----------------------AAAAG---GCAACTAAACAAAGC------CGAGT-G-------------CA--AAATTAAAGCCA-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................CGTCGGTT----GC-AAAAGATA.....................................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000011000000001000000000000000100000000000000000100000000000000000000000000000
....................................................................................................................................................................................................................................................................................AGGAG--AAAT----------------------AAAAG---GCAA.............................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AGTTG-CC------GTATGCCGCCTTC-GT............................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000300
................................................GTCGTCGGTT----GC-AAAAGATA.....................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000001000000000000000000000000
....................AGTTG-CC------GTATGCCGCCT.................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
.........................................GCCTTC-GTCGTCGGTT----GC-AAAAGA.......................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000
.........................................GCCTTC-GTCGTCGGTT----GC-.............................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.......................................CCGCCTTC-GTCGTCGGTT----GC-AAAAGA.......................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CGCCTTC-GTCGTCGGTT----GC-A............................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
................................................GTCGTCGGTT----GC-AAAAGA.......................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
....................AGTTG-CC------GTATGCCGCCTTC-GTC...........................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000
.............................................TC-GTCGTCGGTT----GC-AAAA.........................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................AAGC------CGAGT-G-------------CA--AAATTAAAGC..........................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000000000000000000000000000000000000000000000000000
......................................GCCGCCTTC-GTCGTCGGT.....................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
....................AGTTG-CC------GTATGCCGCCTTC-G.............................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
..................................................................................................................................................................................................................................................................................................................................TAAACAAAGC------CGAGT-G-------------CA--AA..................................................................2011.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GGT-TTTTAAT--------------AAATTCTGCAGCG---AA.............................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................A--GAAATCTTTTATATACACAC------A------................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................GAATAAA----GAAGGAG--AAAT----------------------AAA......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................ATAAA----GAAGGAG--AAAT----------------------AA.......................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GTT----GC-AAAAGATATA--GAAA.............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
............................................TTC-GTCGTCGGTT----GC-AAAAG........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CTTC-GTCGTCGGTT----GC-AAA..........................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............................................TTC-GTCGTCGGTT----GC-AAAA.........................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................TTTAAT--------------AAATTCTGCAGCG---AAAA----------------------------------TT.......................................................................................................................................................................................2511.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GC-AAAAGATATA--GAAATC...........................................................................................................................................................................................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000
.........................................GCCTTC-GTCGTCGGTT----GC-AAAAGATA.....................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
....................................................................................................................................................................................................................................................................................................................................AACAAAGC------CGAGT-G-------------CA--AAATTAAA............................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
........................................CGCCTTC-GTCGTCGGTT----GC-.............................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTTATATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-....................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................AATTAAAGCCA-----AATTTCCAAGGCG-----------...........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................................................................................................................................................................GAATAAA----GAAGGAG--AAAT----------------------AAAA.....................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AATTTCCAAGGCG-----------AATGCA.....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................AATTCTGCAGCG---AAAA----------------------------------TT.......................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AATAAA----GAAGGAG--AAAT----------------------AAAAG---GC...............................................................................................................2411.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................GTCGTCGGTT----GC-AAAAGATATA--GA...............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................TACACAC------A------TAC----------------------------------GC-------------AGTCGGT-TTTTAA..............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AGTTG-CC------GTATGCCGCCTTC-GTCGT.........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..............................................................................................................................................................................AAT--------------AAATTCTGCAGCG---AAAA----------------------------------TTCCA....................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................A------TAC----------------------------------GC-------------AGTCGGT-TTTTAAT--------------AA.............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................GCCTTC-GTCGTCGGTT----GC-A............................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.........................................................T----GC-AAAAGATATA--GAAATCTT.........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................GTATGCCGCCTTC-GTCGTCGGT.....................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AAGGCG-----------AATGCAAATTTTTC----A........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................TATGCCGCCTTC-GTCGTCGGTT----GC-AA...........................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TTTTATATACACAC------A------TAC----------------------------------GC-------------AGTCG.......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................ATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CGCCTTC-GTCGTCGGTT----GC-AAAAGATA.....................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................AAA----GAAGGAG--AAAT----------------------AAAT.....................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
--------------------AGTTG-CC------GTATGCCGCCTTC-GTCGTCGGTT----GC-AAAAGATATA--GAAATCTTTTATATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-TTTTAAT--------------AAATTCTGCAGCG---AAAA----------------------------------TTCCAAGCCC--------GAATAAA----GAAGGAG--AATC----------------------AAAAG---GCAACTAAACAAAGC------CGAGT-G-------------CA--AAATTAAAGCCA-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................GC-AAAAGATATA--GAAATC...........................................................................................................................................................................................................................................................................................................................................................1821.50330000000000000000
..........................................................................................TACACAC------A------TAC----------------------------------GC-------------AGTCGGT-....................................................................................................................................................................................................................................................................2011.00101000000000000000
............................................................................................CACAC------A------TAC----------------------------------GC-------------AGTCGGT-T...................................................................................................................................................................................................................................................................1911.00110000000000000000
.....................................................................................TTATATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-....................................................................................................................................................................................................................................................................2511.00101000000000000000
..............................................................................................................................................................................AAT--------------AAATTCTGCAGCG---...............................................................................................................................................................................................................................1611.00100000001000000000
......................................GCCGCCTTC-GTCGTCGGTT----GC-AAAAG........................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
........................................................................................................................................................................................................................................................................AATAAA----GAAGGAG--AA.................................................................................................................................................1560.17100000001000000000
droSec2
--------------------AGTTG-CC------GTATGCCGCCTTC-GTCGTCGGTT----GC-AAAAGATATA--GAAATCTTTTATATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-TTTTAAT--------------AAATTCTGCAGCG---AAAA----------------------------------TTCCAAGCCC--------GAATAAA----GAAGGAG--AAAT----------------------AAAAG---GCAACTAAACAAAGC------CGAGT-G-------------CA--TAATTAAAGCCA-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................GCCTTC-GTCGTCGGTT----GC-.............................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...........................C------GTATGCCGCCTTC-GTCGTCGGTT----................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
................................................................................................C------A------TAC----------------------------------GC-------------AGTCGGT-TTTTAAT--------------AAA............................................................................................................................................................................................................................................2411.0010100
......................................................................................................................................................................................................................................................TCCAAGCCC--------GAATAAA----GAAGGA......................................................................................................................................................2211.0010010
droYak3
--------------------AGTTG-CC------GTATGCCGCCTTC-GTCGTCGGTT----GC-AAAAGATATA--GAAATCTTTTATATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-TTTTAAT--------------AAATTCTGCAGCG---AAAA----------------------------------TTTCAAGCCC--------GAACA-A----GAAGGAG--AAAT----------------------AAAAC---GCAACTAAACAAAGC------CGAGT-G-------------CA--AAATTAAAGCCG-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................TAC----------------------------------GC-------------AGTCGGT-TTTTAAT--------------A..............................................................................................................................................................................................................................................2012.00200000020000
.....................................................................................................................................................................................................................................................................................................................................ACAAAGC------CGAGT-G-------------CA--AAATTAAAGCCG-----...................................................2711.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................CG-----AATTTCCAAGGCG-----------AATGCAAAT..................2411.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................AATTAAAGCCG-----AATTTCCAA..........................................2011.00100000010000
.....................................................................................................................................................................................................................................................................................................................AAAAC---GCAACTAAACAAAGC------CGA.........................................................................................2311.00100000010000
.....................................................................................................................................................................................................................................................TTTCAAGCCC--------GAACA-A----GAAGGAG--AAAT----------------------A........................................................................................................................2811.00100000010000
droEre2
-----------------CACAGTTG-CC------GTATGCCGCCTTC-GTCGTCGGTT----GC-AAAAGATATA--GAAATCTTTTATATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-TTTTAAT--------------AAATTCTGCAGCG---AAAA----------------------------------TTCCAAGCCC--------GAACA-A----GAAGGAG--AAAT----------------------AAAGC---GCAACTAAACAAAGC------CGAGT-G-------------CA--AAATTAAAGCCA-----AATTTCCAAGGCG-----------AATGCAAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................ATTCTGCAGCG---AAAA----------------------------------TTCC.....................................................................................................................................................................................1911.0010000010
..................ACAGTTG-CC------GTATGCCGCCTT................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.......................................................................................................................................................................................................................................................................GAACA-A----GAAGGAG--AAAT----------------------AAAGC---.................................................................................................................2211.0010000100
..................................................CGTCGGTT----GC-AAAAGATATA--GAAATCT..........................................................................................................................................................................................................................................................................................................................................................2711.0010000100
...................................................................................................................................................................................................................................................................................................................................AAACAAAGC------CGAGT-G-------------CA--AAATTAAAGC..........................................................2711.0010000100
..................................................................................CTTTTATATACACAC------A------TAC----------------------------------GC-------------AGTC........................................................................................................................................................................................................................................................................2511.0011000000
.............................................................................................................................................................................................................................................................................................................................GCAACTAAACAAAGC------CGAGT-G-------------C.......................................................................2211.0010000010
........................................................................................................................................................................................................................................................................................................................................AAGC------CGAGT-G-------------CA--AAATTAAAGCC.........................................................2311.0010000100
......................................GCCGCCTTC-GTCGTCGGTT----GC-A............................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.........................................................................................ATACACAC------A------TAC----------------------------------GC-------------AGTCGGT-....................................................................................................................................................................................................................................................................2111.0011000000
.................................................................................................................................................................................................................AA----------------------------------TTCCAAGCCC--------GAACA-A----GAAGGAG--AAA................................................................................................................................................2811.0011000000
........................................................................................................................................................................................................................................................................................G--AAAT----------------------AAAGC---GCAACTAAACA......................................................................................................2111.0011000000
dp5
AAAAA----TATATCGTCTCAGTTG-CCGTATGCGTATGCCGCCTTCGGTCGTCGGTT----TT-AAAAGATATA--GAAATCTTCTATACCTCCACACACTC-CACAC--------TC-TCTACCCGCCGCCGC--ATAGTAGAGCGCAATCTGTTT----AATCGGT-CTT-AAC--------------------AGCAGAG-------------------------CAAAATATCAAGTAAATC--A--CTC--------AAATC-----------A----------GAA-------ATACAAAAG--AA-------------------------------------------TA---CCAGTAGCAAA-----TAAAT--TCGTGGTG-----------AATGCAAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................CACAC--------TC-TCTACCCGCCGCCG........................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................GCCGCCGC--ATAGTAGAGC...........................................................................................................................................................................................................................................................................................1811.0010100000000
droPer2
AAAAA-----AAATCGTCTCAGTTG-CCGTATGCGTATGCCGCCTTCGGTCGTCGGTT----TT-AAAAGATATA--GAAATCTTCTATACCTCCACACACTC-CACAC--------TC-TCTACCCGCCGCCGC--ATAGTAGAGCGCAATCTGTTT----AATCGGT-CTT-AAC--------------------AGCAGAG-------------------------CAAAATATCAAGTAAATC--A--CCC--------AAATC-----------A----------GAA-------ATACAAAAG--AA-------------------------------------------TA---CCAGTAGCAAA-----TAAAT--TCGTGGTG-----------AATGCAAATTTTTC----AAGTGCGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................CCGCCGCCGC--ATAGTAGAG............................................................................................................................................................................................................................................................................................1911.001000010
...............................................................................................................................GCCGCCGC--ATAGTAGAGCG..........................................................................................................................................................................................................................................................................................1911.001000010
droWil2
--------------------------CC------GTACGCCGCTGTC-GCCGTCGGTTGGGTGCAAAAAGATATAAAGAAATCTTTTGTACACATACACAAACAAACAT--------TCT-------------TGAAATA-TAGAACGC-------------AATCTGT-TTT--------------------ATCAC----------AAAA------TCGAAA----------------AGGAATC--G--A------------A------------------AAAAAAGAAAAAC--------------------------------------------AT-A-------------AA--AAATTAACGCAAAAATTGATT----TGCTA-----------AATGCAAAATTGTTGAAAAAGTGCGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................TGTC-GCCGTCGGTTGGGTGCA.............................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.........................................GCTGTC-GCCGTCGGTTGGG.................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
............................................GTC-GCCGTCGGTTGGGTGCAAAAA.........................................................................................................................................................................................................................................................................................................................................................................2411.00100100
...................................................GTCGGTTGGGTGCAAAAAGATATAAAG................................................................................................................................................................................................................................................................................................................................................................2711.00100100
........................................CGCTGTC-GCCGTCGGTTGGG.................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
............................................GTC-GCCGTCGGTTGGGTG...............................................................................................................................................................................................................................................................................................................................................................................1811.00110000
...........................................TGTC-GCCGTCGGTTGGGT................................................................................................................................................................................................................................................................................................................................................................................1811.00100010

Generated: 05/18/2015 at 06:32 AM