dan_3154

CDS [Dana\GF16364-cds]; CDS [Dana\GF16364-cds]; exon [dana_GLEANR_17633:2]; exon [dana_GLEANR_17633:1]; intron [Dana\GF16364-in]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

##################################################------------------------------------------------------------------------------------------------------------------################################################## AGGTCCTGCGCCAGGAGTTTCTGCAGAAGAAAACCCAGACTAAAATTACGGTATGTTCAAATATTAATCTGTCCAAAATTGAAGGGCAAGTAAATTGGTACAACAGCACATAACAAAAAAACAATCTTTAATAAATATAAATTCATTTTATTTGTAATTTATAGAGCATTAGTCCCGGTGCCGTTGACACGGAGATCCTTGATGACAGTATCAA ************************************************..................(((........((((..((((((((..(((............................................)))..))))))))..)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V106 head	V039 embryo	V105 male body	V055 head
...........................................................................................................................................................................GTCCCGGTGCCGTTGACACGGA.....................	22	0	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................ATTAGTCCCGGTGCCGTTGA...........................	20	0	2	1.00	2	0	2	0	0	0	0
.........GACAGGAGTTTCAGCAAAAGAAAA.....................................................................................................................................................................................	24	3	1	1.00	1	0	0	0	1	0	0
...TCCTGCGCCAGGAGTTTCTGCAGAA..........................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................ATTAGTCCCGGTGCCGTTGACACGG......................	25	0	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................GAGCATTAGTCCCGGTGCCGTTGA...........................	24	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................AACAGCACATACCAAAAAAA.............................................................................................	20	1	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................ATTAGTCCCGGTACCGTTG............................	19	1	2	0.50	1	0	0	0	0	1	0
.........................................................................................................................................................................TAGTCCCGGTGCCGTTGA...........................	18	0	2	0.50	1	0	0	1	0	0	0
AGGTCCTGCGCCAGGAGTTTCT................................................................................................................................................................................................	22	0	2	0.50	1	0	0	1	0	0	0
.GGTACTGCGACAGGAGTTTC.................................................................................................................................................................................................	20	2	3	0.33	1	0	1	0	0	0	0
.............................................................................ATTGGAGGGCAAGTCTATTG.....................................................................................................................	20	3	5	0.20	1	0	0	0	1	0	0
.................TTTCTGAAGAAGAAAACCA..................................................................................................................................................................................	19	2	9	0.11	1	0	1	0	0	0	0
...........................................................................................................ACAAAACAGAAAAACAATCCTT.....................................................................................	22	3	11	0.09	1	0	0	0	1	0	0
................................................................................................................................................................TACGAGCATTAGTCCCGGT...................................	19	3	17	0.06	1	1	0	0	0	0	0
........................................................................................ACTAAAGTGGTACAGCAGCA..........................................................................................................	20	3	19	0.05	1	0	0	0	0	1	0
.....ATGCCCTAGGAGTTTCTG...............................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	1
................................................................................GATGGGCAGGTAAATTG.....................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................TGCTGTTAACACGAAGATC.................	19	3	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................CTTGGTGGCAGTATCAA	17	2	20	0.05	1	0	0	0	0	0	1

TCCAGGACGCGGTCCTCAAAGACGTCTTCTTTTGGGTCTGATTTTAATGCCATACAAGTTTATAATTAGACAGGTTTTAACTTCCCGTTCATTTAACCATGTTGTCGTGTATTGTTTTTTTGTTAGAAATTATTTATATTTAAGTAAAATAAACATTAAATATCTCGTAATCAGGGCCACGGCAACTGTGCCTCTAGGAACTACTGTCATAGTT ************************************************..................(((........((((..((((((((..(((............................................)))..))))))))..)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	V039 embryo	M058 embryo	M044 female body	V106 head
...................................................................................................................................................................................CGTCAACTGTGCCTCAAG.................	18	2	2	0.50	1	0	0	1	0	0
...................................................................................................................................................................................CGTCAACTGTGCCTCAAGTAA..............	21	3	2	0.50	1	0	1	0	0	0
....................................................................................CCGTTCATGTGACAATGTTG..............................................................................................................	20	3	3	0.33	1	0	0	0	1	0
............................................................................................................................................TATCTGAAATAAACATTAAATATC..................................................	24	3	4	0.25	1	1	0	0	0	0
...................................................................................................................................................................................CGGCAACTGGGCCTGAAGGAAC.............	22	3	4	0.25	1	1	0	0	0	0
................................................................................................................................................................................CCGCGGCAACTGTGGCTCTT..................	20	3	13	0.08	1	1	0	0	0	0
......................................................................................................................................................................................CAACTGTGCCTCTCGGATT.............	19	3	15	0.07	1	1	0	0	0	0
...................................................................................................................................................................................CGTCAACTGTGCCTCAAGT................	19	3	16	0.06	1	0	0	0	0	1
........................................................AGTTTCTAATTGGGCAGGT...........................................................................................................................................	19	3	18	0.06	1	1	0	0	0	0
...................................................................................................................................GTATATATTTAAGTAAGATAA..............................................................	21	3	20	0.05	1	0	1	0	0	0
........................................................AGTTTATAGTTAGGCACGT...........................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13340:18431626-18431839 -	dan_3154	AGGTCCTGCGCCAGGAGTTTCTGCAGAAGAAAACCCAGACTAAAATTACGGTATGTTCAAA--T-----------ATTAA---------------------TCTGTCC-AAAA-TTGAAGGGCAAGTA---------A---------------------------------------ATTGGTACAACAGCACATAACAAAAAAACAATCTT---TAAT----AAATATA-AATTCAT---TTT------------------------------------------ATTTGTA--------------------ATTTATAGAGCATTAGTCCCGGTGCCGTTGACACGGAGATCCTTGATGACAGTA---TCAA
droBip1	scf7180000396708:4935776-4935988 +		AGGTCCTGCGCCAGGAATTTCTTCAGAAGAAAACCCAGACTAAAATTACGGTATGTTCAAA--A-----------AC-----------------------TT-----------AT--A-----A----T---CTTTT-------------AATTAGATTGAAACTAAGGTATAGAAACCAAA------AGTTATAAAGTCCAAAGA-----T---TAAT----ATATGAC-CTTATAT---TTA------------------------------------------TTTTGTA--------------------ATTTATAGAGCATCAGTCCCGGTGCCGTTGACACGGAGATCGTTGATGAGAAAA---TCAA
droKik1	scf7180000302544:485299-485462 -		AGGTCCTGCGCCAGGAGTTTATCAACAGCAAGTCGCAGACCAAGGTCACGGTGAGTTGGTG--T-----------ACTCC---------------------T---CT----------AAGGGGAAGCA---------G---------------------------------------CTTGT------A-----------------------GTAAT-------------------A-GT-TTT------------------------------------------CTTTCTC--------------------TTTTTTAGAGCATTAGTCCCGGCGCAGTGGACACTGAAATCGTGGACAAGGATG---TCAT
droFic1	scf7180000453277:117133-117297 -		AGGTCCTGCGACAGGAGTTCCTCAGTAACAAGACTCAAACCAAAGTCACTGTGAGTTGGATAG-AACT---------A--GCT----------------A-----CT----------GATTTGGAACC---------A--------TTTGAAT-----CA------------------------------------------------------------------------------TT-ATT------------------------------------------TTATTCC--------------------TATTTCAGAGCATTAGTCCCGGTGCCGTGGATACTGAGATTGTGGCCGAGGAAC---ACAA
droEle1	scf7180000491023:514994-515170 +		AGGTCCTGCGCCAGGAGTTCCAGAACAGCAAGACAAAGACCAAGATCACGGTAATGGGACACT-GATTAATCGCCTCTCT--T-----TTTA--GGA-T-----------------------GG--------------------CCCATTAAC-----AA-------------------------------------------------------------------------------TT--CCCATTAACAA----------------------------------TTCCC--------------------ATTTGCAGAGCATCAGTCCCGGCGCCGTGGACACCGAGATCGTCGACAAGGAGG---CCCT
droRho1	scf7180000770717:22639-22798 -		AGATCCTGCGCCAGGAGTTCAACAAAAAAGGGACCAAGACCAAGATTACGGTGAGACTATA--A-----------GC-----------------------CT-----------AT--A-----A----A---ATGTG----CAT----------------------------------ATAT------A-----------------------CTAAT-------------------A-TCCCCC------------------------------------------TGGTTCC--------------------CCTTTTAGAGCATCAGTCCTGGTGTGGTAGACACGGAAATCTTTGAAAACG-GA---TCTT
droBia1	scf7180000298389:1450707-1450870 -		AGGTGCTGCGCCAGGAGTTCCATAACAGCAAGACCCAGACCAAGATCACGGTTAGTAGACAGG-GACT---------------ATCAC-TTATTGCCTT-----------------------GG--------------------A-CTCAAAT-----GA-------------------------------------------------------------------------------ATCTC------------------------------------------TTGTCGC--------------------ATCTGCAGAGCATCAGTCCCGGCGCCGTGGACACCGAGATCATCGACAAGGAGG---CCAT
droTak1	scf7180000414375:228979-229135 +		AGGTCCTGCGCCAGGAGTTCCAGAACAGCAAGACCCAGACCAAGATCACGGTTAGTAGCGGGG-GAT----------C--TATTCA-------------A-----TAT-CA----C-AT----------------------------TATAAT-----CT-------------------------------------------------------------------------------AA--TA---------------------------------------C---ATT-C--------------------GATTACAGAGCATCAGTCCCGGTGCCGTGGACACCGAGATCATCGACAAGGCCG---CCCT
droEug1	scf7180000409631:194248-194414 -		AGGGTTATCGCCAAGAGTTCCTCGGCCTGGGCACCCGCATTAAGATTACGGTGGGTTTGCT--T-----------TCTGT---------------TTTTG-----CGT-TT--AT--A-----AAATA---------A---------------------------------------TCACT------A-----------------------AAAAT-------------------A-TTC-CT-------------------------------------------CTTTCC--------------------CATTTTAGAGCGTCAGTCCTGGTGTGGTGGACACGGAGATCCTTCCGGATAGCA---TCAG
dm3	chrX:11657807-11657988 -		AGGTGCTGCGTCAGGAGTTCCACAACAACAAGACCCAGACCAAGATTACGGTAAGTGCGCAGA-GAG----------A--GAT-TAGC-TTA--AAG-------------------------------------------TTGACATTTCGAT-----TA-------------------------------------------------------------------------------CC------------------------CCCTTTTCCGATAAATATCCAT--TGTG------------A-------TTTTACAGAGCATCAGTCCCGGTGCCGTGGACACCGAGATCATCGACAAGGAGG---CTCT
droSim2	x:11039601-11039764 -		AGGTGCTGCGTCAGGAGTTCCACAACAACAAGACCCAGACCAAGATCACGGTAAGTGTGCACA-TAG----------A--TACATTGC-TTA--GGTTT-----------------------GG--------------------GTTTTCAAT-----CA-------------------------------------------------------------------------------AT--TC---------------------------------------C---ATTCC--------------------ATTTGCAGAGCATCAGTCCCGGTGCCGTGGACACCGAGATCATCGACAAGGAGG---CCCT
droSec2	scaffold_36:333459-333622 -		AGGTGCTGCGTCAGGAGTTCCACAACAACAAGACCCAGACCAAGATCACGGTAAGTGGGCAGA-GAG----------A--GCTATTGC-TTA--GATTT-----------------------GG--------------------GTTTTCAAT-----GA-------------------------------------------------------------------------------CT--TC---------------------------------------C---ATTCC--------------------ATTTGCAGAGCATCAGTCCCGGTGCCGTGGACACCGAGATCATCGACAAGGAGG---CCCT
droYak3	X:15040399-15040576 +		AGGTGCTGCGTCATGAGTTCCTCACCAGCAAGACCCAGACCAAGATCACGGTAAGTGCACTGA-GATTATC---------------------------T-----------------------GG--------------------GCTTTTGAT-----CA------------------------------------------------ACCC---TTGCTGATCCGTATCTTTTGTGT---TCC------------------------------------------T-TGTGC--------------------CTTTGTAGAGCATCAGTCCCGGTGCCGTGGATACGGAGATCATCGACAAGAAGG---CCCT
droEre2	scaffold_4690:4068768-4068956 +		AAGGATATCGCCAGGAGTTCTTCGGCCTGGGCACCCGCATCAAGATTACGGTGTGTTTTCCCC-TGCC---------A--TTT----------------G-----CCC-A----TTGA-----A-ATT---------G--------GGTGAAC-----TA-----------------TCAT-------------------------------TTAAC-------------------A-TTCT-----------------------------------------------TCTAATTTCCTTTGCTATTGACCACATCTTAGAGCGTCAGTCCGGGCGTGGTGGACACGGAGATCCTGCCGGACAGCA----TTA
dp5	2:16098997-16099160 -		AGGTACTGCGACAGGAGTTTCAGCAAAAGAACACTGAGACAAAGATAACTGTAAGTTATAT--A-----------G----------------------------------------------------------------TTAA-----------------------------------------------------------------------------------------------------------TAATTCCAATTTGGCCAATAACTAACTAGTTTCC---ATACG--------------------ACCCTTAGAGCATTAGCCCCGGTGCTGTGGACACGGAGATCTTTGATGAAAAAA---TCAA
droPer2	scaffold_0:4309653-4309816 +		AGGTACTGCGACAGGAGTTTCAGCAAAAGAAAACTGAAACGAAGATAACTGTAAGTTATAT--A-----------G----------------------------------------------------------------TTAA-----------------------------------------------------------------------------------------------------------TAATTCCAATTTGGCCAATAACTAACTAGTATCC---ATACG--------------------ACCCTTAGAGCATTAGCCCCGGTGCTGTGGACACGGAGATCATTGATGAGAAAA---TCAA
droWil2	scf2_1100000004590:379262-379437 -		AAGTTCTCCGTCAGGAGTTCCAAATGCAACAGACTCAGGCAAAAATAACCGTAAGTCGTCG--TCATTGTCCGCCAT-----------------------CT-----------GT--C-----A----T---CTGTT----CAT----------------------------------CTAC------A-----------------------GCAAT--------------TTTGTC------------------------------TTTAT--------------CTATCAA--------------------TTTTTTAGAGCATTAGTCCTGGTGCTGTGGATACCGAGATCTTTGACGAGAATG---CGAG
droVir3	scaffold_12932:638538-638704 +		AGGTGCTACGCCAGGAGTTCCTCAACAAGGGCACCAAAATAAAGATCACAGTGAGTCGCACCT-GAC----------A--TACTCT-------------G-----TCT-AA----C-TA----TATCG---------ATT----A-GTTTAAC-----A-------------------------------------------------------------------------------AT-GTG------------------------------------------CTTTTCC--------------------CACCATAGAGCATTAGTCCCGGCGGTGTGGATACCGAAATTATTGACAAGT--C---CCTT
droMoj3	scaffold_6473:10244842-10245050 +		AAATGTATCGCCAGGAGCTGATGGGCATGGGCACGCGTATTAAGATAACGGTATGCTCGAC--T-----------ACTAC-AT----------------A-----CCCTACATAT--A-----A----TATTT----T---------------------------------------TTTCTTTCCATACTATATACACTACATATGAGCTC---TCAT----TGCTATA-TCTTCGT---TTC---------------------------------------------ATTC--------------------ATACACAGAGCATTAGCCCCGGCGTAACGGATACGGAAATTTTGCCGGACTGCATTCGTAA
droGri2	scaffold_14853:1809982-1810175 +		AGGTGCTGCGTCAAGAGTTCCTCAACGCAGGCACACAGATTAAGATAACCGTAAGTGGAGT--T-----------T-------------------------------------------------------------------C-----CA------------------AATTCAAGTCAAC------AATTCTCGACTACACAAATATACT---TTAT----C----------------AA-----------------------------------------------TGTGATTATCATTGTCATTCTTTTGAACACAGAGTATCAGTCCCGGTGCCGTCGATACCGAGATCATTGATAAAGCGT-TGCTCG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

AGGTCCTGCGCCAGGAGTTTCTGCAGAAGAAAACCCAGACTAAAATTACGGTATGTTCAAA--T-----------ATTAA---------------------TCTGTCC-AAAA-TTGAAGGGCAAGTA---------A---------------------------------------ATTGGTACAACAGCACATAACAAAAAAACAATCTT---TAAT----AAATATA-AATTCAT---TTT------------------------------------------ATTTGTA--------------------ATTTATAGAGCATTAGTCCCGGTGCCGTTGACACGGAGATCCTTGATGACAGTA---TCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................................................................................GTCCCGGTGCCGTTGACACGGA........................	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGTCCCGGTGCCGTTGA..............................	20	2	1.00	2	0	2	0	0	0	0
...TCCTGCGCCAGGAGTTTCTGCAGAA..........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGTCCCGGTGCCGTTGACACGG.........................	25	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................GAGCATTAGTCCCGGTGCCGTTGA..............................	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGTCCCGGTGCCGTTGA..............................	18	2	0.50	1	0	0	0	0	0	1
AGGTCCTGCGCCAGGAGTTTCT................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	1

droBip1

AGGTCCTGCGCCAGGAATTTCTTCAGAAGAAAACCCAGACTAAAATTACGGTATGTTCAAA--A-----------AC-----------------------TT-----------AT--A-----A----T---CTTTT-------------AATTAGATTGAAACTAAGGTATAGAAACCAAA------AGTTATAAAGTCCAAAGA-----T---TAAT----ATATGAC-CTTATAT---TTA------------------------------------------TTTTGTA--------------------ATTTATAGAGCATCAGTCCCGGTGCCGTTGACACGGAGATCGTTGATGAGAAAA---TCAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGGTCCTGCGCCAGGAGTTTATCAACAGCAAGTCGCAGACCAAGGTCACGGTGAGTTGGTG--T-----------ACTCC---------------------T---CT----------AAGGGGAAGCA---------G---------------------------------------CTTGT------A-----------------------GTAAT-------------------A-GT-TTT------------------------------------------CTTTCTC--------------------TTTTTTAGAGCATTAGTCCCGGCGCAGTGGACACTGAAATCGTGGACAAGGATG---TCAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGGTCCTGCGACAGGAGTTCCTCAGTAACAAGACTCAAACCAAAGTCACTGTGAGTTGGATAG-AACT---------A--GCT----------------A-----CT----------GATTTGGAACC---------A--------TTTGAAT-----CA------------------------------------------------------------------------------TT-ATT------------------------------------------TTATTCC--------------------TATTTCAGAGCATTAGTCCCGGTGCCGTGGATACTGAGATTGTGGCCGAGGAAC---ACAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGGTCCTGCGCCAGGAGTTCCAGAACAGCAAGACAAAGACCAAGATCACGGTAATGGGACACT-GATTAATCGCCTCTCT--T-----TTTA--GGA-T-----------------------GG--------------------CCCATTAAC-----AA-------------------------------------------------------------------------------TT--CCCATTAACAA----------------------------------TTCCC--------------------ATTTGCAGAGCATCAGTCCCGGCGCCGTGGACACCGAGATCGTCGACAAGGAGG---CCCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGATCCTGCGCCAGGAGTTCAACAAAAAAGGGACCAAGACCAAGATTACGGTGAGACTATA--A-----------GC-----------------------CT-----------AT--A-----A----A---ATGTG----CAT----------------------------------ATAT------A-----------------------CTAAT-------------------A-TCCCCC------------------------------------------TGGTTCC--------------------CCTTTTAGAGCATCAGTCCTGGTGTGGTAGACACGGAAATCTTTGAAAACG-GA---TCTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGGTGCTGCGCCAGGAGTTCCATAACAGCAAGACCCAGACCAAGATCACGGTTAGTAGACAGG-GACT---------------ATCAC-TTATTGCCTT-----------------------GG--------------------A-CTCAAAT-----GA-------------------------------------------------------------------------------ATCTC------------------------------------------TTGTCGC--------------------ATCTGCAGAGCATCAGTCCCGGCGCCGTGGACACCGAGATCATCGACAAGGAGG---CCAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGGTCCTGCGCCAGGAGTTCCAGAACAGCAAGACCCAGACCAAGATCACGGTTAGTAGCGGGG-GAT----------C--TATTCA-------------A-----TAT-CA----C-AT----------------------------TATAAT-----CT-------------------------------------------------------------------------------AA--TA---------------------------------------C---ATT-C--------------------GATTACAGAGCATCAGTCCCGGTGCCGTGGACACCGAGATCATCGACAAGGCCG---CCCT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGGGTTATCGCCAAGAGTTCCTCGGCCTGGGCACCCGCATTAAGATTACGGTGGGTTTGCT--T-----------TCTGT---------------TTTTG-----CGT-TT--AT--A-----AAATA---------A---------------------------------------TCACT------A-----------------------AAAAT-------------------A-TTC-CT-------------------------------------------CTTTCC--------------------CATTTTAGAGCGTCAGTCCTGGTGTGGTGGACACGGAGATCCTTCCGGATAGCA---TCAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGGTGCTGCGTCAGGAGTTCCACAACAACAAGACCCAGACCAAGATTACGGTAAGTGCGCAGA-GAG----------A--GAT-TAGC-TTA--AAG-------------------------------------------TTGACATTTCGAT-----TA-------------------------------------------------------------------------------CC------------------------CCCTTTTCCGATAAATATCCAT--TGTG------------A-------TTTTACAGAGCATCAGTCCCGGTGCCGTGGACACCGAGATCATCGACAAGGAGG---CTCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................ACCCAGACCAAGATTACG....................................................................................................................................................................................................................................................................................................................................	18	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TGCCGTGGACACCGAGATC....................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......TGCGTCAGGAGTTCCACAA.............................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
................................ACCCAGACCAAGATTACA....................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GACACCGAGATCATCGAC..............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GCCGTGGACACCGAGATCA...................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................................GATCATCGACAAGGAGG---C...	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TGCCGTGGACACCGAGATCAT..................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTGCCGTGGACACCGAGAT.....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTAAGTGCGCAGA-GAG----------A--GAT-TAGC-.............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................CAAGACCCAGACCAAGATTACGGTAAG...............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CCCAGACCAAGATTACG....................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CCAGACCAAGATTACGGTAAGTGCGC..........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTAAGTGCGCAGA-GAG----------A--G.....................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGGTGCTGCGTCAGGAGTTCCACAACAACAAGACCCAGACCAAGATCACGGTAAGTGTGCACA-TAG----------A--TACATTGC-TTA--GGTTT-----------------------GG--------------------GTTTTCAAT-----CA-------------------------------------------------------------------------------AT--TC---------------------------------------C---ATTCC--------------------ATTTGCAGAGCATCAGTCCCGGTGCCGTGGACACCGAGATCATCGACAAGGAGG---CCCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................................CAGTCCCGGTGCCGTGGACACCGA........................	24	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TGCCGTGGACACCGAGAT.....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGGTGCCGTGGACACCGAGATCATCGAC..............	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GATCATCGACAAGGAGG---CC..	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CACCGAGATCATCGACAAGGA.........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AGATCATCGACAAGGA.........	16	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AGGTGCTGCGTCAGGAGTTCCACAACAACAAGACCCAGACCAAGATCACGGTAAGTGGGCAGA-GAG----------A--GCTATTGC-TTA--GATTT-----------------------GG--------------------GTTTTCAAT-----GA-------------------------------------------------------------------------------CT--TC---------------------------------------C---ATTCC--------------------ATTTGCAGAGCATCAGTCCCGGTGCCGTGGACACCGAGATCATCGACAAGGAGG---CCCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................ACAAGACCCAGACCAAGATCACGAGC.................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	1	0	0
..........................AACAAGACCCAGACCAAGATCACGAGC.................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	1	0
............................CAAGACCCAGACCAAGATCACGAGC.................................................................................................................................................................................................................................................................................................................................	25	2	1.00	2	0	2	0	0
............................CAAGACCCAGACCAAGATCACGAG..................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................AGTCCCGGTGCCGTGGACACCGAGATC....................	27	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................ATCATCGACAAGGAGG---CC..	18	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................GCCGTGGACACCGAGATC....................	18	1	1.00	1	0	0	1	0
..........................AACAAGACCCAGACCAAGATCACGAG..................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
...............................GACCCAGACCAAGATCACGAGC.................................................................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	0	0	1
................................ACCCAGACCAAGATCACGAGC.................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0

droYak3

AGGTGCTGCGTCATGAGTTCCTCACCAGCAAGACCCAGACCAAGATCACGGTAAGTGCACTGA-GATTATC---------------------------T-----------------------GG--------------------GCTTTTGAT-----CA------------------------------------------------ACCC---TTGCTGATCCGTATCTTTTGTGT---TCC------------------------------------------T-TGTGC--------------------CTTTGTAGAGCATCAGTCCCGGTGCCGTGGATACGGAGATCATCGACAAGAAGG---CCCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....GCTGCGTCATGAGTTCCTCACCA...........................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	2	0	0	1	0	0	0	0	0	0
.....................................GACCAAGATCACGGTAAGTGCA...........................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GCCGTGGATACGGAGATCATCGAC..............	24	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATCAGTCCCGGTGCCGTGG...............................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..........................AGCAAGACCCAGACCAAGATCACGAG..................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................CATCAGTCCCGGTGCCGTGGATACGGA........................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCAGTCCCGGTGCCGTGGATACGGA........................	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
................GTTCCTCACCAGCAAGACCCA.................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATCAGTCCCGGTGCCGTGGATACGGAGAT.....................	29	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...............................GACCCAGACCAAGATCACGAG..................................................................................................................................................................................................................................................................................................................................	21	2	1.50	3	0	0	0	0	0	0	3	0	0	0	0
.................TTCCTCACCAGCAAGACCCAGAC..............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........TCATGAGTTCCTCACCAGCAAG......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....GCTGCGTCATGAGTTCCTCACC............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................CACCAGCAAGACCCAGACCAA...........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GCCGTGGATACGGAGATCATCG................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TGGATACGGAGATCATCGAC..............	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................CA------------------------------------------------ACCC---TTGCTGATCCGTATCTTTTGT..........................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................ATACGGAGATCATCGACAAGAAGG---CCCT	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GCATCAGTCCCGGTGCCGT.................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..GTGCTGCGTCATGAGTTCCT................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GGATACGGAGATCATCGA...............	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GTCCCGGTGCCGTGGATACGGAGAT.....................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATCAGTCCCGGTGCCGTGGATACGGA........................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CGTGGATACGGAGATCATCGACAAGAA.........	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................CATCAGTCCCGGTGCCGTG................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GATCATCGACAAGAAGG---CC..	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..GTGCTGCGTCATGAGTTCCTCACCA...........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCAGTCCCGGTGCCGTGGA..............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGTCCCGGTGCCGTGGATACGGAGAT.....................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................GTTCCTCACCAGCAAGACCCAGAC..............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................ACCAGCAAGACCCAGACCAAGATCACGA...................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CCCGGTGCCGTGGATACGGAG.......................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....CTGCGTCATGAGTTCCTCACCAGC.........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGTCCCGGTGCCGTGGATACGGA........................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............ATGAGTTCCTCACCAGCAAGACC...................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
AGGTGCTGCGTCATGAGTTC..................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TACGGAGATCATCGACAAGAAGG---CCCC	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................ATACGGAGATCATCGACAA............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GATCATCGACAAGAAGG---CCCT	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CAGTCCCGGTGCCGTGGAT.............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TACGGAGATCATCGACAAGAA.........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TACGGAGATCATCGACAAGAAGG---CCCT	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CCCGGTGCCGTGGATACGGAGATCAT..................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................GTTCCTCACCAGCAAGACCC..................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....GCTGCGTCATGAGTTCCTCACCAGC.........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GATACGGAGATCATCGACAAGAAGG---CCCT	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CCCGGTGCCGTGGATACGGA........................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CAGTCCCGGTGCCGTGGATACGGAGAT.....................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGGTGCCGTGGATACGGAGAT.....................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................CAAGACCCAGACCAAGATCACGAG..................................................................................................................................................................................................................................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTGCCGTGGATACGGAGATC....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGTCCCGGTGCCGTGGATACGGAG.......................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GATACGGAGATCATCGACAAGA..........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATCAGTCCCGGTGCCGTGGATACGGAG.......................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TCCCGGTGCCGTGGATACGGA........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GGATACGGAGATCATCGACAAGA..........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATCAGTCCCGGTGCCGTGGATACGG.........................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............ATGAGTTCCTCACCAGCAA.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GATACGGAGATCATCGAC..............	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................GCAAGACCCAGACCAAGATCACGAGC.................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
.............................AAGACCCAGACCAAGATCACGAG..................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..........................AGCAAGACCCAGACCAAGATCACGAGC.................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
................................ACCCAGACCAAGATCACGAG..................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...............................GACCCAGACCAAGATCACGA...................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

AAGGATATCGCCAGGAGTTCTTCGGCCTGGGCACCCGCATCAAGATTACGGTGTGTTTTCCCC-TGCC---------A--TTT----------------G-----CCC-A----TTGA-----A-ATT---------G--------GGTGAAC-----TA-----------------TCAT-------------------------------TTAAC-------------------A-TTCT-----------------------------------------------TCTAATTTCCTTTGCTATTGACCACATCTTAGAGCGTCAGTCCGGGCGTGGTGGACACGGAGATCCTGCCGGACAGCA----TTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dp5

AGGTACTGCGACAGGAGTTTCAGCAAAAGAACACTGAGACAAAGATAACTGTAAGTTATAT--A-----------G----------------------------------------------------------------TTAA-----------------------------------------------------------------------------------------------------------TAATTCCAATTTGGCCAATAACTAACTAGTTTCC---ATACG--------------------ACCCTTAGAGCATTAGCCCCGGTGCTGTGGACACGGAGATCTTTGATGAAAAAA---TCAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................GTTTCAGCAAAAGAACACTGA.................................................................................................................................................................................................................................................................................................................................................	21	2	2.00	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GTGGACACGGAGATCTTTGATGAA...........	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................GCTGTGGACACGGAGATCTTTGA...............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................ATTAGCCCCGGTGCTGTGGACACG..........................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGCCCCGGTGCTGTGGACACGGA........................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GTGGACACGGAGATCTTT.................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TGGACACGGAGATCTTTG................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGCCCCGGTGCTGTGGACACGGAGA......................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................AAAGAACACTGAGACAAAGATAACT....................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
AGGTACTGCGACAGGAGT....................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................GCAAAAGAACACTGAGACAAAGAT........................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CCCGGTGCTGTGGACACGGA........................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TTAGCCCCGGTGCTGTGGACACGGA........................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AGCATTAGCCCCGGTGCTGTG................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGCCCCGGTGCTGTGGACACGGA........................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGCCCCGGTGCTGTGGACA............................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CCCGGTGCTGTGGACACGG.........................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............AGGAGTTTCAGCAAAAGAACACTGA.................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..GTACTGCGACAGGAGTTTCA................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGCCCCGGTGCTGTGGAC.............................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGCCCCGGTGCTGTGGACAC...........................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CCGGTGCTGTGGACACGCC........................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGGTACTGCGACAGGAGTTTCAGCAAAAGAAAACTGAAACGAAGATAACTGTAAGTTATAT--A-----------G----------------------------------------------------------------TTAA-----------------------------------------------------------------------------------------------------------TAATTCCAATTTGGCCAATAACTAACTAGTATCC---ATACG--------------------ACCCTTAGAGCATTAGCCCCGGTGCTGTGGACACGGAGATCATTGATGAGAAAA---TCAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................................................................................................ATTAGCCCCGGTGCTGTGGACACGGA........................	26	2	3.50	7	7	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGCCCCGGTGCTGTGGACACGGA........................	23	2	2.00	4	4	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GCCCCGGTGCTGTGGACACGGA........................	22	2	1.50	3	3	0	0	0	0	0
........................AAAAGAAAACTGAAACGAAGATAACTAGC.................................................................................................................................................................................................................................................................................................................................	29	2	1.50	3	3	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGCCCCGGTGCTGTGGACAC...........................	23	2	1.50	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CCCCGGTGCTGTGGACACGG.........................	20	2	1.50	3	3	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GTGGACACGGAGATCATTGATGA............	23	2	1.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................................................................................................CCGGTGCTGTGGACACGGA........................	19	2	1.00	2	2	0	0	0	0	0
...........................................................................G----------------------------------------------------------------TTAA-----------------------------------------------------------------------------------------------------------TAATTCCAATTTGGCC...........................................................................................................	21	2	1.00	2	2	0	0	0	0	0
..........................AAGAAAACTGAAACGAAGATAACTAGC.................................................................................................................................................................................................................................................................................................................................	27	2	1.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGCCCCGGTGCTGTGGAC.............................	18	2	1.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGCCCCGGTGCTGTGGAC.............................	21	2	0.50	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGCCCCGGTGCTGTGGACAC...........................	20	2	0.50	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGCCCCGGTGCTGTGGACACGGG........................	26	2	0.50	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GCCCCGGTGCTGTGGACACGGG........................	22	2	0.50	1	1	0	0	0	0	0
............AGGAGTTTCAGCAAAAGAAAACTGA.................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................GCCCCGGTGCTGTGGACAC...........................	19	2	0.50	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGCCCCGGTGCTGTGGACACGGA........................	24	2	0.50	1	1	0	0	0	0	0
..............................AAACTGAAACGAAGATAACT....................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGCCCCGGTGCTGTGGACACGG.........................	25	2	0.50	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GGACACGGAGATCATTGATGAGAA.........	24	2	0.50	1	0	0	1	0	0	0
.....................AGCAAAAGAAAACTGAAAC..............................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GCCCCGGTGCTGTGGACACGG.........................	21	2	0.50	1	1	0	0	0	0	0
AGGTACTGCGACAGGAGT....................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CCCCGGTGCTGTGGACAC...........................	18	2	0.50	1	1	0	0	0	0	0

droWil2

AAGTTCTCCGTCAGGAGTTCCAAATGCAACAGACTCAGGCAAAAATAACCGTAAGTCGTCG--TCATTGTCCGCCAT-----------------------CT-----------GT--C-----A----T---CTGTT----CAT----------------------------------CTAC------A-----------------------GCAAT--------------TTTGTC------------------------------TTTAT--------------CTATCAA--------------------TTTTTTAGAGCATTAGTCCTGGTGCTGTGGATACCGAGATCTTTGACGAGAATG---CGAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................................................................................TAGTCCTGGTGCTGTGGATACCGAGA......................	26	1	1.00	1	0	1	0	0	0

droVir3

AGGTGCTACGCCAGGAGTTCCTCAACAAGGGCACCAAAATAAAGATCACAGTGAGTCGCACCT-GAC----------A--TACTCT-------------G-----TCT-AA----C-TA----TATCG---------ATT----A-GTTTAAC-----A-------------------------------------------------------------------------------AT-GTG------------------------------------------CTTTTCC--------------------CACCATAGAGCATTAGTCCCGGCGGTGTGGATACCGAAATTATTGACAAGT--C---CCTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................GTTCCTCAACAAGGGCACC...................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGTCCCGGCGGTGTGGATACC..........................	24	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....GCTACGCCAGGAGTTCCTCAACAAG.........................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GCACCAAAATAAAGATCACAAGC.................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGTCCCGGCGGTGTGGATACCGA........................	26	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TTAGTCCCGGCGGTGTGGATACC..........................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CTACGCCAGGAGTTCCTCAACAAGGG.......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ACGCCAGGAGTTCCTCAACAAGGGCAC....................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CAAAATAAAGATCACAGTGAGT..............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GTTCCTCAACAAGGGCACCAAA................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CAGGAGTTCCTCAACAAGG........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ACGCCAGGAGTTCCTCAACAAGGG.......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................A----C-TA----TATCG---------ATT----A-GTTTAAC-----A-------------------------------------------------------------------------------........................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GTTCCTCAACAAGGGCACCA..................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CAACAAGGGCACCAAAATAAAGAC........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GAAATTATTGACAAGT--C---CCT.	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGTCCCGGCGGTGTGGAT.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................ATTAGTCCCGGCGGTGTG................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GTGGATACCGAAATTATTGACAAGT--C---C...	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AACAAGGGCACCAAAATAAAGATC.......................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................AATAAAGATCACAGTGAGTCGCACCT-......................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GGTGTGGATACCGAAATTATT.................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GCATTAGTCCCGGCGGTGTG................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGTCCCGGCGGTGTGGATACCG.........................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTAGTCCCGGCGGTGTGG...............................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GTGTGGATACCGAAATTAT..................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGGAGTTCCTCAACAAGG........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AGCATTAGTCCCGGCGGTGTGG...............................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CGCCAGGAGTTCCTCAACAAGG........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CTACGCCAGGAGTTCCTCAACAAG.........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GATACCGAAATTATTGACAAGT--C---C...	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GGTGCTACGCCAGGAGTTCCT................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GGATACCGAAATTATTGACA.............	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................ACCAAAATAAAGATCACAAGC.................................................................................................................................................................................................................................................................................................................................	21	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAATGTATCGCCAGGAGCTGATGGGCATGGGCACGCGTATTAAGATAACGGTATGCTCGAC--T-----------ACTAC-AT----------------A-----CCCTACATAT--A-----A----TATTT----T---------------------------------------TTTCTTTCCATACTATATACACTACATATGAGCTC---TCAT----TGCTATA-TCTTCGT---TTC---------------------------------------------ATTC--------------------ATACACAGAGCATTAGCCCCGGCGTAACGGATACGGAAATTTTGCCGGACTGCATTCGTAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

AGGTGCTGCGTCAAGAGTTCCTCAACGCAGGCACACAGATTAAGATAACCGTAAGTGGAGT--T-----------T-------------------------------------------------------------------C-----CA------------------AATTCAAGTCAAC------AATTCTCGACTACACAAATATACT---TTAT----C----------------AA-----------------------------------------------TGTGATTATCATTGTCATTCTTTTGAACACAGAGTATCAGTCCCGGTGCCGTCGATACCGAGATCATTGATAAAGCGT-TGCTCG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................................................................................................................................................................................................................................GGTGCCGTCGATACCGAGATC....................	21	1	2.00	2	2	0
..........................................................................................................................................................................................................................................................................................................................................CCCGGTGCCGTCGATACCGA........................	20	1	1.00	1	1	0
AGGTGCTGCGTCAAGAGTT...................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1
..................................................................................................................................................................................................................................................................................................................................GTATCAGTCCCGGTGCCGT.................................	19	1	1.00	1	1	0
..........TCAAGAGTTCCTCAACGCAGGC......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
......................CAACGCAGGCACACAGATTAAGATA.......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0
........CGTCAAGAGTTCCTCAAC............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
..................................................................................................................................................................................................................................................................................................................................GTATCAGTCCCGGTGCCGTCG...............................	21	1	1.00	1	1	0
AGGTGCTGCGTCAAGAGTTCC.................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1
...........CAAGAGTTCCTCAACGCAGGCACAC..................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0
..................................................................................................................................................................................................................................................................................................................................GTATCAGTCCCGGTGCCGTCGATACC..........................	26	1	1.00	1	0	1
.....................................................................................................................................................................................................................................................................................................................................TCAGTCCCGGTGCCGTCG...............................	18	1	1.00	1	1	0
......................CAACGCAGGCACACAGATT.............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
................................................................................................................................................................................................................................................................................................................................................GCCGTCGATACCGAGATCAT..................	20	1	1.00	1	0	1
......................................................................................................................................................................................................................................................................................................................................................GATACCGAGATCATTGATAAAGCGT-TG....	27	1	1.00	1	0	1
..........................GCAGGCACACAGATTAAGAT........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................................GTCCCGGTGCCGTCGATACCGAG.......................	23	1	1.00	1	1	0

dan_3154

scaffold_13340:18431676-18431789 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads