ID:

dan_3150

 Coordinate:

scaffold_13340:18018966-18019116 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.4 -17.3 -17.2

Flybase annnotation

CDS [Dana\GF16390-cds]; exon [dana_GLEANR_17659:3]; intron [Dana\GF16390-in]

Repeatable elements

NameClassFamilyStrand
Hoana8DNAhAT-hobo+
mature
  1. scaffold_8794:7931-7956 -
  2. scaffold_9326:8007-8032 -
  3. scaffold_12671:44323-44348 -
  4. scaffold_12935:74931-74956 -
  5. scaffold_13034:279776-279801 -
  6. scaffold_13034:496397-496422 -
  7. scaffold_13077:195097-195122 -
  8. scaffold_13082:458381-458406 -
  9. scaffold_13082:3038558-3038583 -
  10. scaffold_13099:597181-597206 -
  11. scaffold_13137:867107-867132 -
  12. scaffold_13228:65362-65387 -
  13. scaffold_13248:3231013-3231038 -
  14. scaffold_13248:4320272-4320297 -
  15. scaffold_13337:2954223-2954248 -
  16. scaffold_13337:18953829-18953854 -
  17. scaffold_13337:21664580-21664605 -
  18. dan_3150  scaffold_13340:18019027-18019052 -
  19. scaffold_13417:870571-870596 -
  20. scaffold_13417:3627648-3627673 -
  21. scaffold_3962:8606-8631 +
  22. scaffold_8259:832-857 +
  23. scaffold_12605:3756-3781 +
  24. scaffold_12911:976985-977010 +
  25. scaffold_12916:3667970-3667995 +
  26. scaffold_12928:176607-176632 +
  27. scaffold_13031:5823-5848 +
  28. scaffold_13078:123605-123630 +
  29. scaffold_13079:131184-131209 +
  30. scaffold_13099:2681773-2681798 +
  31. scaffold_13099:3136117-3136142 +
  32. scaffold_13111:1284104-1284129 +
  33. scaffold_13136:16657-16682 +
  34. scaffold_13156:49149-49174 +
  35. scaffold_13250:2156360-2156385 +
  36. scaffold_13266:5140358-5140383 +
  37. scaffold_13266:10335030-10335055 +
  38. scaffold_13280:1373186-1373211 +
  39. scaffold_13337:20808355-20808380 +
  40. scaffold_13499:1226683-1226708 +
  41. scaffold_5086:6198-6223 +
  42. scaffold_5274:1242-1267 +
  43. scaffold_12097:4926-4951 +
  44. scaffold_12911:1668873-1668898 +
  45. scaffold_12966:436419-436444 +
  46. scaffold_13034:2122238-2122263 +
  47. scaffold_13230:2786951-2786976 +
  48. scaffold_13239:171218-171243 +
  49. scaffold_13248:3728517-3728542 +
  50. scaffold_13266:938163-938188 +
  51. scaffold_13272:448873-448898 +
  52. scaffold_13335:1437226-1437251 +
  53. scaffold_13337:20969595-20969620 +
  54. scaffold_13337:22576898-22576923 +
  55. scaffold_13417:1933162-1933187 +
  56. scaffold_13417:5562648-5562673 +
  57. scaffold_13417:5565069-5565094 +
  58. scaffold_13467:90316-90341 +
  59. scaffold_13469:182634-182659 +
  60. scaffold_13767:491623-491648 +
  61. scaffold_7024:618-643 -
  62. scaffold_7161:772-797 -
  63. scaffold_7482:123-148 -
  64. scaffold_7483:368-393 -
  65. scaffold_12173:4227-4252 -
  66. scaffold_12671:87033-87058 -
  67. scaffold_12905:434629-434654 -
  68. scaffold_12916:5285424-5285449 -
  69. scaffold_12984:242939-242964 -
  70. scaffold_13043:361954-361979 -
  71. scaffold_13043:406812-406837 -
  72. scaffold_13099:1245242-1245267 -
  73. scaffold_13137:1270112-1270137 -
  74. scaffold_13230:2950614-2950639 -
  75. scaffold_13248:4406815-4406840 -
  76. scaffold_13266:16442792-16442817 -
  77. scaffold_13337:16732917-16732942 -
  78. scaffold_13339:2755179-2755204 -
  79. scaffold_13770:301150-301175 -
  80. scaffold_13770:630701-630726 -
  81. scaffold_451:1150-1175 +
  82. scaffold_5086:4953-4978 +
  83. scaffold_5678:487-512 +
  84. scaffold_8594:64-89 +
  85. scaffold_12179:7326-7351 +
  86. scaffold_12276:12776-12801 +
  87. scaffold_12422:123324-123349 +
  88. scaffold_12555:12744-12769 +
  89. scaffold_12869:3464-3489 +
  90. scaffold_12944:242048-242073 +
  91. scaffold_12947:534872-534897 +
  92. scaffold_13045:77254-77279 +
  93. scaffold_13082:316092-316117 +
  94. scaffold_13082:3416194-3416219 +
  95. scaffold_13230:2537321-2537346 +
  96. scaffold_13248:3985565-3985590 +
  97. scaffold_13261:179365-179390 +
  98. scaffold_13339:3290611-3290636 +
  99. scaffold_13339:3668010-3668035 +
  100. dan_3306  scaffold_13417:1886308-1886333 +
star
  1. scaffold_9347:418-445 -
  2. scaffold_9709:3032-3059 -
  3. scaffold_12198:2301-2328 -
  4. scaffold_12916:15973366-15973393 -
  5. scaffold_12943:383621-383648 -
  6. scaffold_12947:1449099-1449126 -
  7. scaffold_13045:1151051-1151078 -
  8. scaffold_13077:509716-509743 -
  9. scaffold_13082:1425281-1425308 -
  10. scaffold_13082:1956867-1956894 -
  11. scaffold_13099:1935267-1935294 -
  12. scaffold_13228:65302-65329 -
  13. scaffold_13248:3230953-3230980 -
  14. scaffold_13248:3568572-3568599 -
  15. scaffold_13258:534710-534737 -
  16. scaffold_13266:5976922-5976949 -
  17. scaffold_13266:19503008-19503035 -
  18. scaffold_13339:723235-723262 -
  19. dan_3150  scaffold_13340:18018967-18018994 -
  20. scaffold_13438:7302-7329 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTCCAACCAAATACCATCATCATCATCATCTCATCGATCACCATCATACGGTAAGCAAAAAACAAGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTCAGTCGCAGTCCGCTAGGTGGCGCCACCCATCTTATTTTATTAGATATATAGCGGATCGTTTATAGTCGGCCGATCCTTATGAAAATTGGCAGATCCGATTGTTTTACCCAAAATAGAATCTGTACCAAATCCCA
******************************************************************************************************************.((.((((..((((((((((((....)))).((((.........))))...))))))))..........)))).))..........*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V055
head
 V105
male body		 V039
embryo
..................................................................................................................TTCAGTCGCAGTCCGCTAGGTGGCGC............................................................................................................... 26 0 20 0.95 19 19 0 0 0
...........................................................................................................................................................................................................TGGCAGATCCGTTTGTCT.............................. 18 2 8 0.13 1 0 1 0 0
...........................................TAATACGGTCAGCAAAAGAC............................................................................................................................................................................................ 20 3 9 0.11 1 0 1 0 0
.........................................................................................................................................................................................................................GTTTTACCCAAAATAGAATCTGTACCAA...... 28 0 11 0.09 1 1 0 0 0
.................................................GGGAAGCAAAAAAGAAGAAAAGA................................................................................................................................................................................... 23 3 14 0.07 1 0 0 1 0
.........AATACCATCTTCATCAATATC............................................................................................................................................................................................................................. 21 3 15 0.07 1 0 0 0 1
................................................................................................................................................................................................................GACCCGAATGTTTCACCCA........................ 19 3 18 0.06 1 0 0 0 1
............................................................................................................................................................................TCGTTTATAGTCGGCCGATCCTTATGAA................................................... 28 0 20 0.05 1 1 0 0 0
......................................................GCACAAAACAAGAAAGAACAGCT.............................................................................................................................................................................. 23 3 20 0.05 1 0 0 1 0
..........................................................................................................................CAGTCCGCTAGGTGGCGCCACC........................................................................................................... 22 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................................ATAGAATCTGTACCAAATCCC. 21 0 20 0.05 1 0 0 1 0

Anti-sense strand reads

GAGGTTGGTTTATGGTAGTAGTAGTAGTAGAGTAGCTAGTGGTAGTATGCCATTCGTTTTTTGTTCTTTCCTTTCGATTGAAGCCCGCCTCGGCTTCAACTATATGGGAACGTCAAGTCAGCGTCAGGCGATCCACCGCGGTGGGTAGAATAAAATAATCTATATATCGCCTAGCAAATATCAGCCGGCTAGGAATACTTTTAACCGTCTAGGCTAACAAAATGGGTTTTATCTTAGACATGGTTTAGGGT
***************************************************.((.((((..((((((((((((....)))).((((.........))))...))))))))..........)))).))..........****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V106
head
 V039
embryo
 V055
head
.............................GAGGAGCTAGTTGTAGTAT........................................................................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0
..........................GTAGAGCAGCTAGTGGTAT.............................................................................................................................................................................................................. 19 2 2 0.50 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................CTAACAAAATGGGTTTTATCTTAGACAT.......... 28 0 13 0.46 6 5 1 0 0 0 0
..................................................................................................................................................................................................................................TTTTATCTTAGACATGGTTTA.... 21 0 20 0.35 7 0 0 0 7 0 0
...........................................................................................................................................................................................................................AAATGGGTTTTATCTTAGACATGGTT...... 26 0 12 0.33 4 4 0 0 0 0 0
..........................................................................................................................................................................................................................AAAATGGGTTTTATCTTAGACATGGTT...... 27 0 12 0.25 3 3 0 0 0 0 0
.........................................................................................................GGGAACGTCAAGTCAGCGT............................................................................................................................... 19 0 20 0.25 5 0 5 0 0 0 0
................................................................................................................TCAAGTCAGCGTCAGGCGATCCA.................................................................................................................... 23 0 20 0.25 5 0 5 0 0 0 0
............................................................................................................................................................................................................................AATGGGTTTTATCTTAGACATGGTT...... 25 0 13 0.23 3 2 0 0 0 1 0
...........................................................................................................................................................................................................................AAATGGGTTTTATCTTAGACATGGTTT..... 27 0 10 0.20 2 2 0 0 0 0 0
.........................................................................................................................................................................................................................CAAAATGGGTTTTATCTTAGACATGGTT...... 28 0 11 0.18 2 2 0 0 0 0 0
......................................................CGTTTTTTGTTCTTTCCTTTCGATGG........................................................................................................................................................................... 26 1 6 0.17 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................AAATGGGTTTTATCTTAGACATGGT....... 25 0 12 0.17 2 2 0 0 0 0 0
...........................................................................................................GAACGTCAAGTCAGCGTCAGGCG......................................................................................................................... 23 0 20 0.15 3 0 3 0 0 0 0
...............................................................................................TCAACTATATGGGAACGTCAAGTCA................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0 0
.............................................................................................................................................................................GCAAATATCAGCCGGCTAGGAATACT.................................................... 26 0 20 0.10 2 0 2 0 0 0 0
............................................................................................................................................................................................................................AATGGGTTTTATCTTAGACATGGTTT..... 26 0 10 0.10 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................CAAAATGGGTTTTATCTTAGACAGG......... 25 1 12 0.08 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................AAAATGGGTTTTATCTTAGACATGGT....... 26 0 12 0.08 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................AACAAAATGGGTTTTATCTTAGACAT.......... 26 0 13 0.08 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................CTAACAAAATGGGTTTTATCTTAGAC............ 26 0 14 0.07 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................CTTACAAACTGGGTTTTATCATAGACAT.......... 28 3 14 0.07 1 0 0 0 0 1 0
.....................................................................................................................................................................................................................CTAACAAAATGGGTTTTAGCTTATA............. 25 2 18 0.06 1 1 0 0 0 0 0
.........................................................TTTTTGTTCTTTCCTTTCGATTGAA......................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
......GGTTTAAGGTAGTGGTACT.................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................................CTATATATCGCCTAGCAAATATCAGCC................................................................. 27 0 20 0.05 1 0 1 0 0 0 0
.....................................................................................CGCCTCGGCTTCAACTATATG................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 1 0
........................................................................................................TGGGAACGTCAAGTCAGCG................................................................................................................................ 19 0 20 0.05 1 0 0 1 0 0 0
........................................................................................................................................................................GCCTAGCAAATATCAGCC................................................................. 18 0 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................................................ATAATCTATATATCGCCTAGCAAATATC..................................................................... 28 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................TTCAACTATATGGGAACGTCAAGT..................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
............................................................................................................AACGTCAAGTCAGCGTCAGGCGA........................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................................................................................CTAACAAAATGGGTTTTATCTTAGAAAT.......... 28 1 20 0.05 1 1 0 0 0 0 0
............................................................................................................AACGTCAAGTCAGCGTCAGGCGATCCAC................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................................................................TAGGAATACTTTTAACCGTCTA........................................ 22 0 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................AAAATTGTTTTTATCTTAGACATTGTT...... 27 3 20 0.05 1 0 0 0 0 1 0
........................................................................................................................................CGCGGTGGGTACAATAAAATAATCTAT........................................................................................ 27 1 20 0.05 1 0 0 1 0 0 0
..............................................................................................................................................................................CAAATATCAGCCGGCTAGGAATACT.................................................... 25 0 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................GGTGGGTAGAATAAAATAA............................................................................................. 19 0 20 0.05 1 0 0 1 0 0 0
......................................................................................................................................ACCGCGGTGGGTAGAATAAAA................................................................................................ 21 0 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................CGTCAGGCGATCCACCGCGGT............................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 1
...........................................................................................................................................GGTGGGTAGAATAAAATAATCTAT........................................................................................ 24 0 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:18018916-18019166 - dan_3150 CTCCAACCAAA-TA----C---CATCATCAT-----CATCATCTCATCGATCA-CCATCATACGGTAAGCAAA-------------AAACAAGAAAG---GAAA-GCTAA-CTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTCAGTCG-----------C--AGTCCG-------------------------------------------------------CTAGGTGGCGCCACCCAT--------------------------CTTATTTTATTAGA--------------------TA-----------------------------------TATAGCGG--ATCGTTTATAGTCGGCCGATCCTTATGAAAATTGGCAGATCCGATTGTTTTAC-CCA------A----------AATA-------GAATCTGTACCAAATCCCA
droBip1 scf7180000396768:28453-28677 + CGCAAACAAAAACA----A---AATTATCAG-----CAAAATTT-----TGCA-CAAACAAATATTAACCACAAAAAGAAA---ATAAACAAGAAAG---GAAA-GCTAA-CTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTAAAACC----------------------------------------------------------------------------------------------------------------------------------GGA------------------TATA-----------------------------------TATCGCAAACATCGGATATAGTTGGCCGATCCCTATGAAATTTGGTAGGTTGGATGAACTGAC-CAA------A----------AATA-------GAATCTGTATCAAGTTCCA
droKik1 scf7180000302225:17321-17566 + AAATACAAATA-TT---------ATA-----------CTCTTATTTACG-------ATCC--------TTGGTAT--A--G---AAAAACAAGAAAG---G-AA-GCTAA-CTTCGGC--ACGCCGAAGTTTGTATACCCTTGCAGATATTA--TT-----------------------------TCATTAAATTTTACCTATACTTATTATGTT---GAGAGTTTGACAGTTACAGT-TT--------------------------------TACATTCC---C------------------AGTTTA-----------------------------------TATGGCAGCTATATGATATAGTTGTCCGATTTTCATGAAATTTAT-----------------ACCAAAATTTT-------GAACTAATAAAATA--AA------------CTCA
droFic1 scf7180000454108:216161-216411 - AAATG-------------T---TATTAAAATCGGATAATTCTATCATATA--G-CTGCCATACA--AA------------A-GATAAAACAAGAAAG---G-AA-ACTAG-CTTCGAC--AAGCCGAAGCTTATATACCCTTGCAGTCATCA--AATATTTTGAAC-----------------------------------------------------AGACTA----CACAA--------ATTTTTTCATAT-------------------T-----------------TTTG---ACTATTGTTCA-----------------------------------TATGGCAGCTATATGATATAGTCGTCCGATTTTGATGAAATTTTA-----------------TTTTTTATTCAAGAGTCGTTAAAA-------AACTATATATTCCAAAAATCA
droEle1 scf7180000488636:419-684 - CACCAAAAAAA-AAATTGGTGTTGCTTCCAT-----CATCTTTCACTTGAATA-TTAAATTCAGGCAATAAAAA------AATTTGAATCAAGAAAG---T-AA-GCAAA-CTTCGGC--AAGCCGAAATTCATATACCCTTGCAGCCATTG--CAAAAATTAAATATTCTTGAAGACATTAAAATTATGATTTACTTGCG----------------TGTATGTT----TAAGAGCATT---------------------------------------------------------------------------------------------GAAGCCATGATGATTTGCAGCTATATGATATCGTTTTCCGATTTTAATAAAATTAAA-----------------TGCGTAATTC---------------------------------------TGA
droRho1 scf7180000775462:696-937 + AACAACATCAA-GA----T---CTTCAC------------AGATCATCAACCT-CCTTCCTTCTCTATTTC--TC--A--AA--AAAACCCAAATATCGGGAAA-TCTAA-TTTCGGGCGGAGCCGAAGTTTATATACCCTTGCAGAATAT-----------------TCTGTA-------------------------------------------------------AGTTATGGTATT--------------------------------TCCATTCGTTTAG--------------------TTA-----------------------------------TATGGCAGCTATAGGATATAGTCGGAAGATCCTTATGATATTTTAAAGGTCGGATTGATTTGC-CAA------A----------AATA-------AAACCCATA--GAATCCCA
droBia1 scf7180000302098:271198-271476 + TCG-AATTAAA-TT----T---TATCAAAATCGAATGACTATATCATAAAGCAGCCATCGGAAAGTGAGTGGTAA--AATAATATGAAACAAGAAAT---G-AA-GATAA-CTTCGGC--AAGCCGAAGTTTGTATACCCATGCAGTTATAA--AAAATAATAAACT-TTAGTA--------AATTTGTGAAATATTTCAT-TCCTTAT----------------------------------------------------------------T-----------------TTAG---ACAAT--TTTT-----------------------------------TTTGACATCTATCTGTTAGAGTAGTCCGATTTTTATTAAATTGAA-----------------TTCAAAATTCT-------TAAAAATATAAA---AAATTTATTCCCAATATTA
droTak1 scf7180000415207:93438-93706 - CACCAACGAGA-TT---GT---CAGCATTTT-----TATCAGCTTTTTAACAT-TCATCAATCTAAATCTA---------A---TCAAACAAGAAAG---G-AA-GCTAG-CTTCGGC--CAGCCGAAGCTTATATACCCTTGAAGATCATTCC-AATTAATTAAC-----------------------------------------------------AAATCG----CAAAAATGTTCA-ATTTTCTAATA-TTTCTCATTAATTTCCGAT------------------------------CGTTCC-----------------------------------TATGGCAGCTATATGATATAGTCGTCCGATTTTGATCCAATTAAA-----------------ATTGAAATTCG-------AAAATATTTAAAAA--GA-----GTCATATCCTA
droEug1 scf7180000409111:41118-41190 - ATAATATT--------------------------------------------------------TTAACAACA-------------AAATAATTAAA---G-AA-GCTAA-CTTCGGC--AAGCCAAAGTTTATATACCCCTGCAGCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3L:22752025-22752080 + AA------------------------------------------------------------------------------------AGGCAAGAAGG---G-AA-GCTAA-CTTTGGC--AAGCCGATGCTTATATACCCTTGCAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3r:2045619-2045675 + CACCCGCCAAG-TA----C---CACCACCAC-----CATCACCTCATCGATCA-TCATCACACGGTAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_1:5681320-5681397 - CACCAGA----------------------------------------------------TTTTGGCAAGAACAA------A---GCTAACAGGAAGG---G-AA-ATTAA-CTGCGAC--AAGCCGAAGTTTGTATGCCCTTGCAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:18071769-18071830 + CACCCGCCAAG-TA----C---CACCACCAC-----CATCACCTCATCGATCA-TCATCACACGGTAAGCGCAAG-------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4770:2389373-2389433 + CACCCGCCAAG-TA----C---CACCATCAC-----CACCACCTCATCGATCA-TCATCACACGGTAAGCGCAA--------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 2:15690135-15690196 - CACCCCTTAAG-TA----C---CACCACCAC-----CATCACCTAATTGATCA-TCATCACACGGCAAGTACAAA-------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_0:4724180-4724241 + CACCCCTTAAG-TA----C---CACCACCAC-----CATCACCTAATTGATCA-TCATCACACGGCAAGTACAAA-------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004902:25031-25216 + TTGTTATGAA------------------CATC------TCATCTC-----------ATCA--------GTGGTAA--AAAAA--AAAAACCAGAGGGCC-G-GG-GCTAA-CTTCGACC-GCGTCAAAGTTTGTATACCCTTGCAATTATT----------------------------------TTGGTAACTCTTTCCT-TACCTATTATAGCCATCAAAGTG----GAAAAACGTT---------------------------------------------------------------------------------------------TAAGCTAAAAAGGCTAATG----------------------------------T------------------TTC-CGA------A----------AGAA-------CGG------------CCTA
droVir3 scaffold_13045:1909294-1909481 + ATAATCTTGTC-TA----C---------------------------------A-CTACCCTACGTCAAAAC-------------AAAAACGAGAAAA---AAGG-GCTAT-CTTCGGC--ACGCCAAAGATCTAATACCCTTGCAGACCCAACC-------------------------------------------------------------------------------------------TTTTCATA-ATGCTCATAGTGCTTTGCC------------------------------CGTATCTAAGAAATATCGGGAAAATAGTAA---------------------------------ATGCCGAGTTTGGTCAAGATATC-----------------TTGAT------------------A---------------------AACAAAA
droMoj3 scaffold_6540:11424535-11424613 + GC---ACCAAA-TA----T---CATCATCAT-----CATCATCTGATCAATCA-TCATCATACGGTAAGTACAC-------------GAAAGAGAAG---T-AA-GTTAA-TCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:3390753-3390923 + AACAA---------------------------------------------------------------------------------------GAAAG---AACAACTTAATCTTAGAC--ACGCTGAAGATTACATACCCTTGCAAAGCAA-----------------AGCCTA-------------------------------------------------------CCTGGTCGCATC--------------------------------TTTATTTCATTACAACTTTAAAAAAAAAAT--TTTT-----------------------------------TTTTCTAACTATATAAGA--TTTGATTGATGCTAATGACGTTT-----------------TAT-CTA------A----------AGTA-------TAGTCCGT-----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CTCCAACCAAA-TA----C---CATCATCAT-----CATCATCTCATCGATCA-CCATCATACGGTAAGCAAA-------------AAACAAGAAAG---GAAA-GCTAA-CTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTCAGTCG-----------C--AGTCCG-------------------------------------------------------CTAGGTGGCGCCACCCAT--------------------------CTTATTTTATTAGA--------------------TA-----------------------------------TATAGCGG--ATCGTTTATAGTCGGCCGATCCTTATGAAAATTGGCAGATCCGATTGTTTTAC-CCA------A----------AATA-------GAATCTGTACCAAATCCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................TTCAGTCG-----------C--AGTCCG-------------------------------------------------------CTAGGTGGCGC..........................................................................................................................................................................................................................26200.95191900000
................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAC-CCA------A----------AATA-------GAATCTGTACCAA......28110.091100000
...................................................................................................................................................................................................................................................................................................................................................................TCGTTTATAGTCGGCCGATCCTTATGAA...........................................................................28200.051100000
.....................................................................................................................................................................C--AGTCCG-------------------------------------------------------CTAGGTGGCGCCACC......................................................................................................................................................................................................................22200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-------GAATCTGTACCAAATCCC.21200.051000010
droBip1
CGCAAACAAAAACA----A---AATTATCAG-----CAAAATTT-----TGCA-CAAACAAATATTAACCACAAAAAGAAA---ATAAACAAGAAAG---GAAA-GCTAA-CTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTAAAACC----------------------------------------------------------------------------------------------------------------------------------GGA------------------TATA-----------------------------------TATCGCAAACATCGGATATAGTTGGCCGATCCCTATGAAATTTGGTAGGTTGGATGAACTGAC-CAA------A----------AATA-------GAATCTGTATCAAGTTCCASizeHit CountTotal NormTotal
No Reads
droKik1
AAATACAAATA-TT---------ATA-----------CTCTTATTTACG-------ATCC--------TTGGTAT--A--G---AAAAACAAGAAAG---G-AA-GCTAA-CTTCGGC--ACGCCGAAGTTTGTATACCCTTGCAGATATTA--TT-----------------------------TCATTAAATTTTACCTATACTTATTATGTT---GAGAGTTTGACAGTTACAGT-TT--------------------------------TACATTCC---C------------------AGTTTA-----------------------------------TATGGCAGCTATATGATATAGTTGTCCGATTTTCATGAAATTTAT-----------------ACCAAAATTTT-------GAACTAATAAAATA--AA------------CTCASizeHit CountTotal NormTotal
No Reads
droFic1
AAATG-------------T---TATTAAAATCGGATAATTCTATCATATA--G-CTGCCATACA--AA------------A-GATAAAACAAGAAAG---G-AA-ACTAG-CTTCGAC--AAGCCGAAGCTTATATACCCTTGCAGTCATCA--AATATTTTGAAC-----------------------------------------------------AGACTA----CACAA--------ATTTTTTCATAT-------------------T-----------------TTTG---ACTATTGTTCA-----------------------------------TATGGCAGCTATATGATATAGTCGTCCGATTTTGATGAAATTTTA-----------------TTTTTTATTCAAGAGTCGTTAAAA-------AACTATATATTCCAAAAATCASizeHit CountTotal NormTotal
No Reads
droEle1
CACCAAAAAAA-AAATTGGTGTTGCTTCCAT-----CATCTTTCACTTGAATA-TTAAATTCAGGCAATAAAAA------AATTTGAATCAAGAAAG---T-AA-GCAAA-CTTCGGC--AAGCCGAAATTCATATACCCTTGCAGCCATTG--CAAAAATTAAATATTCTTGAAGACATTAAAATTATGATTTACTTGCG----------------TGTATGTT----TAAGAGCATT---------------------------------------------------------------------------------------------GAAGCCATGATGATTTGCAGCTATATGATATCGTTTTCCGATTTTAATAAAATTAAA-----------------TGCGTAATTC---------------------------------------TGASizeHit CountTotal NormTotal
No Reads
droRho1
AACAACATCAA-GA----T---CTTCAC------------AGATCATCAACCT-CCTTCCTTCTCTATTTC--TC--A--AA--AAAACCCAAATATCGGGAAA-TCTAA-TTTCGGGCGGAGCCGAAGTTTATATACCCTTGCAGAATAT-----------------TCTGTA-------------------------------------------------------AGTTATGGTATT--------------------------------TCCATTCGTTTAG--------------------TTA-----------------------------------TATGGCAGCTATAGGATATAGTCGGAAGATCCTTATGATATTTTAAAGGTCGGATTGATTTGC-CAA------A----------AATA-------AAACCCATA--GAATCCCASizeHit CountTotal NormTotal
No Reads
droBia1
TCG-AATTAAA-TT----T---TATCAAAATCGAATGACTATATCATAAAGCAGCCATCGGAAAGTGAGTGGTAA--AATAATATGAAACAAGAAAT---G-AA-GATAA-CTTCGGC--AAGCCGAAGTTTGTATACCCATGCAGTTATAA--AAAATAATAAACT-TTAGTA--------AATTTGTGAAATATTTCAT-TCCTTAT----------------------------------------------------------------T-----------------TTAG---ACAAT--TTTT-----------------------------------TTTGACATCTATCTGTTAGAGTAGTCCGATTTTTATTAAATTGAA-----------------TTCAAAATTCT-------TAAAAATATAAA---AAATTTATTCCCAATATTASizeHit CountTotal NormTotal
No Reads
droTak1
CACCAACGAGA-TT---GT---CAGCATTTT-----TATCAGCTTTTTAACAT-TCATCAATCTAAATCTA---------A---TCAAACAAGAAAG---G-AA-GCTAG-CTTCGGC--CAGCCGAAGCTTATATACCCTTGAAGATCATTCC-AATTAATTAAC-----------------------------------------------------AAATCG----CAAAAATGTTCA-ATTTTCTAATA-TTTCTCATTAATTTCCGAT------------------------------CGTTCC-----------------------------------TATGGCAGCTATATGATATAGTCGTCCGATTTTGATCCAATTAAA-----------------ATTGAAATTCG-------AAAATATTTAAAAA--GA-----GTCATATCCTASizeHit CountTotal NormTotal
No Reads
droEug1
ATAATATT--------------------------------------------------------TTAACAACA-------------AAATAATTAAA---G-AA-GCTAA-CTTCGGC--AAGCCAAAGTTTATATACCCCTGCAGCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AA------------------------------------------------------------------------------------AGGCAAGAAGG---G-AA-GCTAA-CTTTGGC--AAGCCGATGCTTATATACCCTTGCAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................GAAGG---G-AA-GCTAA-CTTTGGC--AAGCCGA...........................................................................................................................................................................................................................................................................................................................................2719.0090000000000000000000000000000000000000000000000000000000000000000000000000000032400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................G-AA-GCTAA-CTTTGGC--AAGCCGATGCT.......................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AAGG---G-AA-GCTAA-CTTTGGC--AAGC..............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................AGAAGG---G-AA-GCTAA-CTTTGGC--AAGCCGA...........................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................A-GCTAA-CTTTGGC--AAGCCGATGCTTATA...................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TAA-CTTTGGC--AAGCCGATGCTT......................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................AA-CTTTGGC--AAGCCGATGCTTATATACCC..............................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................GCTAA-CTTTGGC--AAGCCGATGCTTATA...................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.A------------------------------------------------------------------------------------AGGCAAGAAGG---G-AA-GCTAA-CTTTGGC--AA................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TAA-CTTTGGC--AAGCCGATGCTTA.....................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................AAGAAGG---G-AA-GCTAA-CTTTGGC--AAGCCGA...........................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TTTGGC--AAGCCGATGCTTATATACCCTT............................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GCAAGAAGG---G-AA-GCTAA-CTTTGGC--AAGC..............................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AA------------------------------------------------------------------------------------AGGCAAGAAGG---G-AA-GCTAA-CTTTGGC--AA................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AAGAAGG---G-AA-GCTAA-CTTTGGC--AAGCCGAT..........................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TTTGGC--AAGCCGATGCTTATATA.................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................CTTTGGC--AAGCCGATGCTTATATACC...............................................................................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AA------------------------------------------------------------------------------------AGGCAAGAAGG---G-AA-CG...............................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
droSim2
CACCCGCCAAG-TA----C---CACCACCAC-----CATCACCTCATCGATCA-TCATCACACGGTAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CACCAGA----------------------------------------------------TTTTGGCAAGAACAA------A---GCTAACAGGAAGG---G-AA-ATTAA-CTGCGAC--AAGCCGAAGTTTGTATGCCCTTGCAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CACCCGCCAAG-TA----C---CACCACCAC-----CATCACCTCATCGATCA-TCATCACACGGTAAGCGCAAG-------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CACCCGCCAAG-TA----C---CACCATCAC-----CACCACCTCATCGATCA-TCATCACACGGTAAGCGCAA--------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
CACCCCTTAAG-TA----C---CACCACCAC-----CATCACCTAATTGATCA-TCATCACACGGCAAGTACAAA-------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CACCCCTTAAG-TA----C---CACCACCAC-----CATCACCTAATTGATCA-TCATCACACGGCAAGTACAAA-------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTGTTATGAA------------------CATC------TCATCTC-----------ATCA--------GTGGTAA--AAAAA--AAAAACCAGAGGGCC-G-GG-GCTAA-CTTCGACC-GCGTCAAAGTTTGTATACCCTTGCAATTATT----------------------------------TTGGTAACTCTTTCCT-TACCTATTATAGCCATCAAAGTG----GAAAAACGTT---------------------------------------------------------------------------------------------TAAGCTAAAAAGGCTAATG----------------------------------T------------------TTC-CGA------A----------AGAA-------CGG------------CCTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................TG----GAAAAACGTT---------------------------------------------------------------------------------------------TAAGCTAAAAAGG.................................................................................................................25200.10200020
.....................................................................................................................................................................................................................................................................................................................................................AAGGCTAATG----------------------------------T------------------TTC-CGA------A----------AGAA-------CGG------------C...26200.10200020
.....................................................................................................................................................................................................................GCCATCAAAGTG----GAAAAACGTT---------------------------------------------------------------------------------------------TAAGC.........................................................................................................................27200.05101000
..........................................................................................................................................................................................................................................................................................................................................................TAATG----------------------------------T------------------TTC-CGA------A----------AGAA-------CGG------------CCT.23200.05101000
.......................................................................................................................................................................................................................................................................................................................................................GGCTAATG----------------------------------T------------------TTC-CGA------A----------AGAA-------CGG------------C...24200.05100100
.................................................................................................................................................................................................................................................................................................................................................TAAAAAGGCTAATG----------------------------------T------------------TTC-CGA------A----------AGAA-------C..................27200.05100010
.........................................................................................................................................................................................TTGGTAACTCTTTCCT-TAC.............................................................................................................................................................................................................................................................19200.05101000
.................................................................................A--AAAAACCAGAGGGCC-G-GG-GCTA.............................................................................................................................................................................................................................................................................................................................................................23200.05101000
...................................................................................................................................................................................................................TAGCCATCAAAGTG----GAAAAACGTT---------------------------------------------------------------------------------------------TAAGC.........................................................................................................................29200.05101000
......................................................................................................................................ATACCCTTGCAATTATT----------------------------------TTGG.............................................................................................................................................................................................................................................................................21200.05101000
.............................................................................AAAAA--AAAAACCAGAGGGCC-G-G...................................................................................................................................................................................................................................................................................................................................................................22200.05100100
droVir3
ATAATCTTGTC-TA----C---------------------------------A-CTACCCTACGTCAAAAC-------------AAAAACGAGAAAA---AAGG-GCTAT-CTTCGGC--ACGCCAAAGATCTAATACCCTTGCAGACCCAACC-------------------------------------------------------------------------------------------TTTTCATA-ATGCTCATAGTGCTTTGCC------------------------------CGTATCTAAGAAATATCGGGAAAATAGTAA---------------------------------ATGCCGAGTTTGGTCAAGATATC-----------------TTGAT------------------A---------------------AACAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................CTACGTCAAAAC-------------AAAAACGAGAAAA---AAG...................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................TTCATA-ATGCTCATAGTGCTTTGCC------------------------------CG.........................................................................................................................................................27100.606000000000000000000000000001000001000400000000000000000000000000
.......................................................................................................................................................................................................................................................TTCATA-ATGCTCATAGTGCTTTGC..........................................................................................................................................................................................24200.459000000300000000000001000000004100000000000000000000000000000000
.......................................................................................................................................................................................................................................................TTCATA-ATGCTCATAGTGCTTTGCC------------------------------C..........................................................................................................................................................26200.408000000000000000000000000007100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................ATCGGGAAAATAGTAA---------------------------------ATGCC.......................................................................................2130.331000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................CC-------------------------------------------------------------------------------------------TTTTCATA-ATGCTCATAGTGCTT.............................................................................................................................................................................................25200.255000000000000000000000000003020000000000000000000000000000000000
........................................................................................................................................ACCCTTGCAGACCCAACC-------------------------------------------------------------------------------------------TTTTCA...............................................................................................................................................................................................................24200.255005000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TTCATA-ATGCTCATAGTGCTTTGCC------------------------------CGT........................................................................................................................................................2890.222000000000000000000000000002000000000000000000000000000000000000
.....................................................................................AAAACGAGAAAA---AAGG-GC...............................................................................................................................................................................................................................................................................................................................................................1850.201010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TCGGC--ACGCCAAAGATCTAATACCCT.............................................................................................................................................................................................................................................................................................................................26200.204000000000000000000000000000030000000000000000000000010000000000
................................................................................................A---AAGG-GCTAT-CTTCGGC--ACGC..............................................................................................................................................................................................................................................................................................................................................21120.172000000000000000000000000000000010000000000000000000000000000100
.................................................................................................................TCGGC--ACGCCAAAGATCTAATACCCTT............................................................................................................................................................................................................................................................................................................................27200.153000000000000000000000000000001200000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TAGTAA---------------------------------ATGCCGAGTTTGGTCAAGA.........................................................................25200.153000000000000000000000000000020000010000000000000000000000000000
.......................................................................................................................................................................................................................................................TTCATA-ATGCTCATAGTGCTTTGCC------------------------------...........................................................................................................................................................25200.153000000000000000000000000000000030000000000000000000000000000000
......................................................................................................................................................AACC-------------------------------------------------------------------------------------------TTTTCATA-ATGCTCATAGTGCTT.............................................................................................................................................................................................27200.153000000000000000000000000000000000030000000000000000000000000000
..................................................................................................................................................................................................................................................................TCATAGTGCTTTGCC------------------------------CGTATCTAAG.................................................................................................................................................2590.111000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................TCATA-ATGCTCATAGTGCTTTGCC------------------------------CGT........................................................................................................................................................2790.111000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................GATCTAATACCCTTGCAGACC.....................................................................................................................................................................................................................................................................................................................21200.102000000000000000000000000000000200000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CCGAGTTTGGTCAAGATATC-----------------TTGAT------------------A---------------------.......26200.102000000000000000000000000000020000000000000000000000000000000000
..........................................................................................................................................................................................................................................................ATA-ATGCTCATAGTGCTTTGCC------------------------------CGTA.......................................................................................................................................................26100.101000000000000000000000000001000000000000000000000000000000000000
....TCTTGTC-TA----C---------------------------------A-CTACCCTACGTCAAAA....................................................................................................................................................................................................................................................................................................................................................................................................27200.102001000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................TCATA-ATGCTCATAGTGCTTTGCC------------------------------CG.........................................................................................................................................................26100.101000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................ATAGTGCTTTGCC------------------------------CGTATCTAAG.................................................................................................................................................23200.102000000000000000000000000000020000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AAATAGTAA---------------------------------ATGCCGAGTTTG................................................................................21200.102000000000000000000000000020000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TTCATA-ATGCTCATAGTGCTT.............................................................................................................................................................................................21200.102000000000000000000000000200000000000000000000000000000000000000
..................................................................................................................................TCTAATACCCTTGCAGACCCAACC-------------------------------------------------------------------------------------------T....................................................................................................................................................................................................................25200.102000000000000000000000000000100010000000000000000000000000000000
............................................................................................................................................................................................................................................................A-ATGCTCATAGTGCTTTGCC------------------------------CGT........................................................................................................................................................23130.081000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TAGTAA---------------------------------ATGCCGAGTTTGGTCAA...........................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................GATCTAATACCCTTGCAGACCCAACC-------------------------------------------------------------------------------------------TT...................................................................................................................................................................................................................28200.051000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................AA---------------------------------ATGCCGAGTTTGGTCAAGATATC-----------------T...................................................26200.051000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................ACCCAACC-------------------------------------------------------------------------------------------TTTTCATA-ATGCTCATAGT.................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................GCTAT-CTTCGGC--ACGCCAAAGATC......................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................TACCCTTGCAGACCCAACC-------------------------------------------------------------------------------------------TTTTCATA-A...........................................................................................................................................................................................................28200.051000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TTTTCATA-ATGCTCATAGTGCTTTGCC------------------------------...........................................................................................................................................................27200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................AGATCTAATACCCTTGCAGACC.....................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AAATAGTAA---------------------------------ATGCCGAGTTTGGTCA............................................................................25200.051000000000000000000000001000000000000000000000000000000000000000
..................................................................................................................CGGC--ACGCCAAAGATCTAA...................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................CGCCAAAGATCTAATACCCTTGCAGACC.....................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................AAAGATCTAATACCCTTGCAGACCCAACC-------------------------------------------------------------------------------------------.....................................................................................................................................................................................................................29200.051000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................AGATCTAATACCCTTGCAGACCC....................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................TAATACCCTTGCAGACCCAACC-------------------------------------------------------------------------------------------TT...................................................................................................................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................TAATACCCTTGCAGACCCA...................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000001000000000000000000000000000000
.......TGTC-TA----C---------------------------------A-CTACCCTACGTCAAAA....................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................AACC-------------------------------------------------------------------------------------------TTTTCATA-ATGCTCATAGTGCT..............................................................................................................................................................................................26200.051000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AAATAGTAA---------------------------------ATGCCGAGTTTGGT..............................................................................23200.051000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................ACC-------------------------------------------------------------------------------------------TTTTCATA-ATGCTCATAGTGCTT.............................................................................................................................................................................................26200.051000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CC-------------------------------------------------------------------------------------------TTTTCATA-ATGCTCATAGTGC...............................................................................................................................................................................................23200.051000000000000000000000000000000000001000000000000000000000000000
................................................................................................................TTCGGC--ACGCCAAAGATCTAATACCCT.............................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000000000000000010000000000000
...............................................................................................................................................................................................................................................................................................................................CGGGAAAATAGTAA---------------------------------ATGCCGAGTTTG................................................................................26200.051000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................CC-------------------------------------------------------------------------------------------TTTTCATA-ATGCTCATAGTGCT..............................................................................................................................................................................................24200.051000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................CC-------------------------------------------------------------------------------------------TTTTCATA-ATGCTCATAGTGCTTT............................................................................................................................................................................................26200.051000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................CCCTTGCAGACCCAACC-------------------------------------------------------------------------------------------TTTTCATA-AT..........................................................................................................................................................................................................27200.051000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GGAAAATAGTAA---------------------------------ATGCCGAGT...................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GAAAATAGTAA---------------------------------ATGCCGAGTTTGGTCA............................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TA-ATGCTCATAGTGCTTTGCC------------------------------...........................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AAAATAGTAA---------------------------------ATGCCGAGTTTGGTCAAG..........................................................................28200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................A-ATGCTCATAGTGCTTTG...........................................................................................................................................................................................18200.051000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................TAT-CTTCGGC--ACGCCAAAGATCT.....................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000010000000000000000000000000000000000000
droMoj3
GC---ACCAAA-TA----T---CATCATCAT-----CATCATCTGATCAATCA-TCATCATACGGTAAGTACAC-------------GAAAGAGAAG---T-AA-GTTAA-TCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AACAA---------------------------------------------------------------------------------------GAAAG---AACAACTTAATCTTAGAC--ACGCTGAAGATTACATACCCTTGCAAAGCAA-----------------AGCCTA-------------------------------------------------------CCTGGTCGCATC--------------------------------TTTATTTCATTACAACTTTAAAAAAAAAAT--TTTT-----------------------------------TTTTCTAACTATATAAGA--TTTGATTGATGCTAATGACGTTT-----------------TAT-CTA------A----------AGTA-------TAGTCCGT-----------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:36 AM