dan_3146

exon [dana_GLEANR_19862:4]; CDS [Dana\GF18603-cds]; exon [dana_GLEANR_19862:5]; CDS [Dana\GF18603-cds]; intron [Dana\GF18603-in]

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCTTGAGCCGATGGACGAGGAAGTTGCGTTAATAAGCCAGCAACAGAAGGGTGATTCCAACGATCCGAAAACTGAATCAAAATATTTGGAAAAGCCAGGGAAAGTCAAAGATGATGATACCATGGATATTTTTCTTGAGCCTATGGACGAGGAAGTCGCATCAACAAGCCAGAAACATAAAAGTAATGCCAATGAATCGAAATGTTTGGAAAAAAAAGAGAAAGTCAAAGAAGAAGATTTATTTCTTGACGATTTGGATGATTTTTGGGAGCCCATGGCGGAGGAAGTGGCATTGATGAGTCAACAAGACAAGAAAGGTATTAAGGAGCAGCCAGAG ************************************************....((((..((.((((((...............))))))...((((((((((((.....(((.......)))....)))))))))).))((((((.(((.....)))..........((((((((((..((((......((((((((......(((((...............)))))......))))))))........))))..))).)))))))....))))))))..)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V039 embryo	V055 head	V105 male body	V106 head
.................................................................................................................................................................CTACAAGCCAGAAACATAAAAGT.........................................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................GATTTATTTCTTGACGATTTGGAT..............................................................................	24	0	1	1.00	1	1	0	0	0	0	0
..........................................ACAGAAGGGTGATTCCAAC....................................................................................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0
TCTTGAGCCGATGGACGAGGAA...........................................................................................................................................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................AGCCCATGGCGGAGGAAGTAGC..............................................	22	1	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CAAGACAAGAAAGGTATTAAGGAGC........	25	0	1	1.00	1	1	0	0	0	0	0
.........................................................................................AAAAGCCAGGGACAGACAAA....................................................................................................................................................................................................................................	20	2	2	0.50	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TGAAGAGTCAACGAGACAAGTA......................	22	3	2	0.50	1	0	1	0	0	0	0
...................................................................................................................................................................................................................AAAAAAGAGAAAGACAAAGA..........................................................................................................	20	1	3	0.33	1	1	0	0	0	0	0
......................................................GTCCGACGATCCGAAAAC.........................................................................................................................................................................................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0
..............................................................................AAAATATCTTGAAAAGCTAGGG.............................................................................................................................................................................................................................................	22	3	4	0.25	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................GGGTAATTTTTGGGAGCCC...............................................................	19	2	5	0.20	1	1	0	0	0	0	0
...........................................................................................................AAGATGGTGAGACGATGGAT..................................................................................................................................................................................................................	20	3	10	0.10	1	0	0	0	0	1	0
..............................................................................................................................................................................................AATGAGTTGAAATGTTTGG................................................................................................................................	19	2	10	0.10	1	0	0	0	1	0	0
...........................................................................................................................GGATATTTGTATTGAGCC....................................................................................................................................................................................................	18	2	13	0.08	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CAAGACACGAGAGGGATTA..............	19	3	15	0.07	1	0	0	0	1	0	0
...........................................................................................................AAGATGATGATAGGATGGAA..................................................................................................................................................................................................................	20	3	20	0.05	1	0	0	1	0	0	0
..................................................................................TATCTTGAAAAGCTAGGGA............................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1
.....................................................ATTCCGACGATCCGAATGC.........................................................................................................................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................AAGAGAAAGTAGAAGAAGAA......................................................................................................	20	2	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................GAAAAAAAAGAAAAAGTCCAACA..........................................................................................................	23	3	20	0.05	1	1	0	0	0	0	0

AGAACTCGGCTACCTGCTCCTTCAACGCAATTATTCGGTCGTTGTCTTCCCACTAAGGTTGCTAGGCTTTTGACTTAGTTTTATAAACCTTTTCGGTCCCTTTCAGTTTCTACTACTATGGTACCTATAAAAAGAACTCGGATACCTGCTCCTTCAGCGTAGTTGTTCGGTCTTTGTATTTTCATTACGGTTACTTAGCTTTACAAACCTTTTTTTTCTCTTTCAGTTTCTTCTTCTAAATAAAGAACTGCTAAACCTACTAAAAACCCTCGGGTACCGCCTCCTTCACCGTAACTACTCAGTTGTTCTGTTCTTTCCATAATTCCTCGTCGGTCTC ************************************************....((((..((.((((((...............))))))...((((((((((((.....(((.......)))....)))))))))).))((((((.(((.....)))..........((((((((((..((((......((((((((......(((((...............)))))......))))))))........))))..))).)))))))....))))))))..)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V039 embryo	M044 female body	M058 embryo
......................................................................................................................................................................................................................TTTCTCGTTCAGTTTCTTCC.......................................................................................................	20	2	3	0.33	1	1	0	0
.....................................................................................................................................................................................................................................................................................................................TTTCTTTCCATAATTCCTACTC......	22	3	3	0.33	1	0	1	0
.....................................................................ATGACTTAGTTTTATGAAC.........................................................................................................................................................................................................................................................	19	2	9	0.11	1	1	0	0
.....................................................................................................................................................................................................................................................................................................................TTTCTTTCCATAATTCCTACT.......	21	3	10	0.10	1	0	1	0
.............................................................CTAGGTATTTGACTTAGATTT...............................................................................................................................................................................................................................................................	21	3	12	0.08	1	1	0	0
..............................................................................................................................................................................................TTAATTAGCTCGACAAACCT...............................................................................................................................	20	3	14	0.07	1	0	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13340:17653248-17653584 +	dan_3146	T-------------------------------------------------------------------------------------------------------CTTGAGCCGATGGACGAGGAAGTTGCGTTAATAAGCCAGCAACAGAAGGGTGATTCCAACGATCCGAAAACTGAATCAAAATATTTGGAAAAGCCAGGGAAAGTCAAAGATGATGATACCATGGATATTTTTCTTGAGCCTATGGACGAGGAAGTCGCATCAACAAGCCAGAAACATAAAAGTAATGCCAATGAATCGA-----------AATGTTTG-GAAAAAAAAG-----AGAAAGTCA-------------------------AAGAAGAAGATTTATTTCTTGACGATTTGGATGATTTTTGGGAGCCCATGGCGGAGGAAGTGGCATTGATGAGTCAACAAGACAAGAAAGGTATTAAGGAGCAGCCAGAG--------------------------------------------
droBip1	scf7180000396721:274456-274804 -		T-------------------------------------------------------------------------------------------------------CTGGAGCCCATGGAAGAGGAAATGGCGCTAATAAGCCAGCAGCAGAAAAGCGATTCCAACAATCAGAAAACTGAATCAACATGTTTGGAAAACCAAGAGAAAGTCAAGGAAGAAGACACTCTGGATATTTTTGATGAACCCTTGGAAGAGGAAGTCGCCTTAATGAGCCAGCAAAAGAATAGCGATGGCAACGACCAGAAAACTGAATCAAATGTTAATCAAAATCAAG-----ATAAAATCA-------------------------AGGAAGAAGATTTATTTCTTGAGGATCTCGATGGTTTTTCGGAGCCCATGGCTGAGGAAGTGGAATTGATGAGTCAACAGGGCAAGAATGGTATCAAGGGACATCCAGAG--------------------------------------------
droKik1	scf7180000302706:897015-897110 -		GT---------------------------------------------GTAGAACCAAAAGTAAAATCCGAACTAGACGATTTGGAGATCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGGATGATTTTCTGGAGCCAATGGATGAGGAAATCAAGTTGA---CCCAAC----------------------------------------------------------------------------
droFic1	scf7180000454096:607795-608004 +		T---------------------------------------------------------------------------------------------GGATGATTTTCTTG------------------------------------------------------------------------------------------------------------------------------------AGCCCATGGACGAGGAATTGGTTCTTACCACTCAGAAAAATAACAACGATCCTAATGAATT---------CGTTGATCCCGAACCTGAGAAAGCATTGCCAAAAAGCCCTCAGAAA---------------GATGATCTTGATTTAGAACTCGACGTCTTTAATGATTTCCTAGAACCAATGGCCGAGGAAGTGGAATTACTTAGCCAGCAGAAGAAGA-------------------------------------------------------------------
droEle1	scf7180000490995:36441-36670 -		G-----------------------------------------------------------------------------------ATATTGACTTAGATGATTTCTTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAAGTTGAATTAATCTCTCAGAAAAAAATATTGAAGTTTAATAATTT---------GGTAGACCACAAAGCAGATAAAGTGCAGCTGACGCCTCACCAGATAGATGAAACATGTCATGATGGGTTTGAGCTACTGTCAGAA---------GATTTTCTAGAGCCGATGCAAGAAGAAGTGGAATTAATAAGTCAGCAAAAGCTGAAAGG---------------------------------------------------------------
droRho1	scf7180000768566:8366-8633 -		AG---------------------------------CCGATTTCAGATATGAAAATTCATGCAGAATCCACGAT---TGATTTAGATATCGATTTAGATGATTTTTTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAAGTCGAACTGATCTCTCAGAAAAAGGTATTGCAATTTATAGACTT---------GGTAGATCCCAAAGCTGAGAAAGCGCAGCTAATGACCCAGCAGACAACTGAAACATGCGATGATGATTTGGAGCTACTGACCGAAG---------ATTTCCTAGAGCCGATGCGAGAGGAAGTGGAGCTAATTAGTCAGCAAAA------------------------------------------------------------------------
droBia1	scf7180000302155:707493-707783 +		CAATGAGTTTGGACGAGACAAAGGTAGCGTTTGAGCCCACTGCAGGTCTGAAAGCGGAAGCAGAATCCACGATAGATGATTTAGATATCGACTTAAATGATTTCCTGG------------------------------------------------------------------------------------------------------------------------------------AGCCCATGGACGAAGAAGTGGAATTGATCGCTCAAAAAACGGAAAACAAAATCAATA---------------------------AAAGCCAAGTGCACATAAATACCCCGGAGAAAGAAAATTCGTGCAAAGATGAACTGGAACTACTGTCCGAAGATTTCAAAGATTTCCTGGAGCCGATGGAAGAGGAAGTGGCGTTAGTTACTCAGC----------------------------------------------------------------------------
droTak1	scf7180000415711:384857-385046 -		C-------------------------------------------------------------------------------------------------------CTAG------------------------------------------------------------------------------------------------------------------------------------AGCCCATGGACGAGGAAGTCGAACTGATGTCTCAGAAAAAAAAGAC----------------------------GAAAACAACACAGAGAAAGTGCAAGTAAAAAGCCCGCGGATAGACAAACCTTGCAAAGATGAACTTGATCTACTGTCCGAAGATTTGAAAGATTTTCTAGAGCCGATGGCAGAGGAAGTAGAGTTAATGACTCAGCAAA-------------------------------------------------------------------------
droEug1	scf7180000409760:1090785-1090990 -		T-------------------------------------------------------------------------------------------------------CTGG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACGAGGAAGTCAAGCTGAATACTGAGATAAAGGAAAAAGAATCAAAAAGTAT---------TACGAATACTGAGTCAGAGGAAGTGGCGGTAGCAAGTCCGAAAAAAGAAAATATTTGCCAGGATGATCTCGATCTAATGGCCGTAGATTTCAATGAATTCCTTGAACCGATGGCAGAGGAACTTCAGTTAACTAATCAGC----------------------------------------------------------------------------
dm3	chr3R:17311524-17311805 +		T-------------------------------------------------------------------------------------------------------CTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAACTGGAATTAGCCTCCCAGACAAAAGGGAAGTCGCAAGAGAACAT---------CGTAGATCACCAGATGGAAAAATTGGAGAAAAACTGCGAGCAGAAAGAAACAGCACACAACAATGACCTTGATCTAACGGACGAGGACTTGAAAGAATTTCTAGAGCCGATGGTGGAGGAAGTGGAGTTGATGAGCCAAAAAAAGGCGAATGACTTCAAGGATTTTCTCGAGCCAATGCCAGAGGAGTTAGAGCTAATGAGCCAGCAGAAGAAAAA
droSim2	3r:3998836-3999129 -		AT------------GATACGAAAG------TTAAGTCCTCTTTAAATCTGAAAATTCAGGCAGAATCCATTGTCGATGATTTGGATATCGACTTGGATGATTTTCTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAACTGGAATTAGCCTCCCAGACAATTGGGAAGTCGCAAAAGAACAT---------CCTAGATCACCAGACGGAAAAATTGGAGGAAAACTGCCAGCAGAAAGAAACAGCACACAACGATGACCTTGACTTAACGGCCGAGGACTTGAAAGAATTTCTAGAGCCGATGGTGGAGGAAGTGGAGTTGATGAGCCAACAAA-------------------------------------------------------------------------
droSec2	scaffold_6:4177254-4177535 -		T-------------------------------------------------------------------------------------------------------CTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAACTGGAATTAGCCTCCCAGACAAATGGGAAGTCGCAAAAGAACAT---------CCTAGATCACCAGACGGAAAAATTTGAGGAAAACTGCCAGCAGAAAGAAACTGCACACAACGATGACCTTGATCTAACGGCCGAGGACTTGAAAGAATTTCTAGAGCCGATGGTGGAGGAAGTGGAGTTGATGAGCCAACAAAAGGCGAATGACTTCAAGGACTTTCTCGAGCCAATGGCAGAGGAGTTAGAGCTAGTGAGCCACCAGAACAAAAA
droYak3	v2_chr3R_random_009:14925-15235 +		CAATGAGCATAGACGACACGAAAGTAGAAGTTAAGTTCTCTCCAATCATGCAAATGCAGGTGGAATCCAATGCTGATGATTTGGATATCGACTTGGATGCTTTTCTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACGAGGAACTCGAATTAACCTCTCAGACAAAGGGGAAGGCACAAGAAAACTT---------CCTAGATAACCAGACGGAGAAAGTGGAGAAAAACTGCCTGCAGAAAGAAGCAACGCACAATGATGCACTTGACCTAACGGCCGAAGACTTGAAAGAATTTTTAGAGCCGATGGCAGAGGAAGTAGAATTGATAAGTCAACAA--------------------------------------------------------------------------
droEre2	scaffold_4770:4355408-4355679 -		AT---------------------------------------------CTGAAAATGCAGGCGGAATCCGTTGTTGATGATTTGGATATCGACTTGGATGCTTTTCTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAACTGGAATTAACCTCCCAGACAAAGAGGAAGACACAAGAAAACTT---------TGAAGATCACCAGGCGGAGAAATTAGAGAACAACAGCCAGCAGAAAGAAACAACATACAATGATGCACTGGATCTAACGGCCGAAGACTTGAAAGAATTTCTAGAGCCGATGGCAGAGGAAGTGGAGTTGATAAGTCAACAAAAGAAG--------------------------------------------------------------------
droWil2	scf2_1100000004558:1792529-1792636 +		AA-------------------------------------------------------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA----GAAGAACCAAAATTGGACT--------------TGGATTTGAATGATTTTCTGGAGCCCATGGCAGAGGAGCGGGATTTAATGACACAGCATAAGCAGCAGGA------------------G----------AC--------GCAATTG--------------AAC
droGri2	scaffold_15112:4183781-4183783 +		GA-------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

T-------------------------------------------------------------------------------------------------------CTTGAGCCGATGGACGAGGAAGTTGCGTTAATAAGCCAGCAACAGAAGGGTGATTCCAACGATCCGAAAACTGAATCAAAATATTTGGAAAAGCCAGGGAAAGTCAAAGATGATGATACCATGGATATTTTTCTTGAGCCTATGGACGAGGAAGTCGCATCAACAAGCCAGAAACATAAAAGTAATGCCAATGAATCGA-----------AATGTTTG-GAAAAAAAAG-----AGAAAGTCA-------------------------AAGAAGAAGATTTATTTCTTGACGATTTGGATGATTTTTGGGAGCCCATGGCGGAGGAAGTGGCATTGATGAGTCAACAAGACAAGAAAGGTATTAAGGAGCAGCCAGAG--------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................................................................................................................................................................................GATTTATTTCTTGACGATTTGGAT..........................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................ACAGAAGGGTGATTCCAAC..........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
T-------------------------------------------------------------------------------------------------------CTTGAGCCGATGGACGAGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGAAAGGTATTAAGGAGC....................................................	25	1	1.00	1	0	1	0	0	0	0

droBip1

T-------------------------------------------------------------------------------------------------------CTGGAGCCCATGGAAGAGGAAATGGCGCTAATAAGCCAGCAGCAGAAAAGCGATTCCAACAATCAGAAAACTGAATCAACATGTTTGGAAAACCAAGAGAAAGTCAAGGAAGAAGACACTCTGGATATTTTTGATGAACCCTTGGAAGAGGAAGTCGCCTTAATGAGCCAGCAAAAGAATAGCGATGGCAACGACCAGAAAACTGAATCAAATGTTAATCAAAATCAAG-----ATAAAATCA-------------------------AGGAAGAAGATTTATTTCTTGAGGATCTCGATGGTTTTTCGGAGCCCATGGCTGAGGAAGTGGAATTGATGAGTCAACAGGGCAAGAATGGTATCAAGGGACATCCAGAG--------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GT---------------------------------------------GTAGAACCAAAAGTAAAATCCGAACTAGACGATTTGGAGATCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGGATGATTTTCTGGAGCCAATGGATGAGGAAATCAAGTTGA---CCCAAC----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

T---------------------------------------------------------------------------------------------GGATGATTTTCTTG------------------------------------------------------------------------------------------------------------------------------------AGCCCATGGACGAGGAATTGGTTCTTACCACTCAGAAAAATAACAACGATCCTAATGAATT---------CGTTGATCCCGAACCTGAGAAAGCATTGCCAAAAAGCCCTCAGAAA---------------GATGATCTTGATTTAGAACTCGACGTCTTTAATGATTTCCTAGAACCAATGGCCGAGGAAGTGGAATTACTTAGCCAGCAGAAGAAGA-------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

G-----------------------------------------------------------------------------------ATATTGACTTAGATGATTTCTTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAAGTTGAATTAATCTCTCAGAAAAAAATATTGAAGTTTAATAATTT---------GGTAGACCACAAAGCAGATAAAGTGCAGCTGACGCCTCACCAGATAGATGAAACATGTCATGATGGGTTTGAGCTACTGTCAGAA---------GATTTTCTAGAGCCGATGCAAGAAGAAGTGGAATTAATAAGTCAGCAAAAGCTGAAAGG---------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AG---------------------------------CCGATTTCAGATATGAAAATTCATGCAGAATCCACGAT---TGATTTAGATATCGATTTAGATGATTTTTTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAAGTCGAACTGATCTCTCAGAAAAAGGTATTGCAATTTATAGACTT---------GGTAGATCCCAAAGCTGAGAAAGCGCAGCTAATGACCCAGCAGACAACTGAAACATGCGATGATGATTTGGAGCTACTGACCGAAG---------ATTTCCTAGAGCCGATGCGAGAGGAAGTGGAGCTAATTAGTCAGCAAAA------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAATGAGTTTGGACGAGACAAAGGTAGCGTTTGAGCCCACTGCAGGTCTGAAAGCGGAAGCAGAATCCACGATAGATGATTTAGATATCGACTTAAATGATTTCCTGG------------------------------------------------------------------------------------------------------------------------------------AGCCCATGGACGAAGAAGTGGAATTGATCGCTCAAAAAACGGAAAACAAAATCAATA---------------------------AAAGCCAAGTGCACATAAATACCCCGGAGAAAGAAAATTCGTGCAAAGATGAACTGGAACTACTGTCCGAAGATTTCAAAGATTTCCTGGAGCCGATGGAAGAGGAAGTGGCGTTAGTTACTCAGC----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C-------------------------------------------------------------------------------------------------------CTAG------------------------------------------------------------------------------------------------------------------------------------AGCCCATGGACGAGGAAGTCGAACTGATGTCTCAGAAAAAAAAGAC----------------------------GAAAACAACACAGAGAAAGTGCAAGTAAAAAGCCCGCGGATAGACAAACCTTGCAAAGATGAACTTGATCTACTGTCCGAAGATTTGAAAGATTTTCTAGAGCCGATGGCAGAGGAAGTAGAGTTAATGACTCAGCAAA-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

T-------------------------------------------------------------------------------------------------------CTGG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACGAGGAAGTCAAGCTGAATACTGAGATAAAGGAAAAAGAATCAAAAAGTAT---------TACGAATACTGAGTCAGAGGAAGTGGCGGTAGCAAGTCCGAAAAAAGAAAATATTTGCCAGGATGATCTCGATCTAATGGCCGTAGATTTCAATGAATTCCTTGAACCGATGGCAGAGGAACTTCAGTTAACTAATCAGC----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

T-------------------------------------------------------------------------------------------------------CTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAACTGGAATTAGCCTCCCAGACAAAAGGGAAGTCGCAAGAGAACAT---------CGTAGATCACCAGATGGAAAAATTGGAGAAAAACTGCGAGCAGAAAGAAACAGCACACAACAATGACCTTGATCTAACGGACGAGGACTTGAAAGAATTTCTAGAGCCGATGGTGGAGGAAGTGGAGTTGATGAGCCAAAAAAAGGCGAATGACTTCAAGGATTTTCTCGAGCCAATGCCAGAGGAGTTAGAGCTAATGAGCCAGCAGAAGAAAAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................AGGACTTGAAAGAATTTCTAGAGCC............................................................................................................	25	1	29.00	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	4	12	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTTGAAAGAATTTCTAGAGCC............................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TAACGGACGAGGACTTGAAAGAATT.....................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGAAAGAATTTCTAGAGCC............................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................AGGAACTGGAATTAGCCT................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGAAGTGGAGTTGATGAGCCAAC............................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTCGAGCCAATGCCAGAGGAGT............................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAGCTAATGAGCCAGCAGA.......	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................AACTGGAATTAGCCTCCCAGA..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGGAGGAAGTGGAGTTGATGAG.................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGATTTTCTCGAGCCAATGCCA...................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTAGAGCCGATGGTGGAG..................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................G------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAACT...........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGAGGAGTTAGAGCTAATGA................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGGAGGAAGTGGAGTTGATGA..................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTAGAGCCGATGGTGGAG..................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAATTTCTAGAGCCGATGGT......................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSim2

AT------------GATACGAAAG------TTAAGTCCTCTTTAAATCTGAAAATTCAGGCAGAATCCATTGTCGATGATTTGGATATCGACTTGGATGATTTTCTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAACTGGAATTAGCCTCCCAGACAATTGGGAAGTCGCAAAAGAACAT---------CCTAGATCACCAGACGGAAAAATTGGAGGAAAACTGCCAGCAGAAAGAAACAGCACACAACGATGACCTTGACTTAACGGCCGAGGACTTGAAAGAATTTCTAGAGCCGATGGTGGAGGAAGTGGAGTTGATGAGCCAACAAA-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................TATCGACTTGGATGATTTTCTAG------------------------------------------------------------------------------------------------------------------------------------AGC...........................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..............................................TCTGAAAATTCAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................TTTCTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAACT...........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CGAGGACTTGAAAGAATTTCTAGAGCC............................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GAAGTCGCAAAAGAACAT---------CCT.....................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TGGACAAGGAACTGGAATTAGCCTG...............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................TGGACAAGGAACTGGAATTAGCCTCC..............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CAATGGACAAGGAACTGGAATTAGCC.................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CACAACGATGACCTTGACTTAACGGCCG.....................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TTAACGGCCGAGGACTTGAAAGAAT......................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

T-------------------------------------------------------------------------------------------------------CTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAACTGGAATTAGCCTCCCAGACAAATGGGAAGTCGCAAAAGAACAT---------CCTAGATCACCAGACGGAAAAATTTGAGGAAAACTGCCAGCAGAAAGAAACTGCACACAACGATGACCTTGATCTAACGGCCGAGGACTTGAAAGAATTTCTAGAGCCGATGGTGGAGGAAGTGGAGTTGATGAGCCAACAAAAGGCGAATGACTTCAAGGACTTTCTCGAGCCAATGGCAGAGGAGTTAGAGCTAGTGAGCCACCAGAACAAAAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAAAGGCGAATGACTTC...........................................................	21	1	2.00	2	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGTTGATGAGCCAACAAAA........................................................................	23	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGCCGATGGTGGAGGC................................................................................................	19	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGGAAGTGGAGTTGATGA..................................................................................	23	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGAGCCAACAAAAG.......................................................................	19	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGAGTTAGAGCTAGT..................	19	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................GCCAATGGACAAGGAACTGGA........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACTTTCTCGAGCCAATGGCAGA.................................	26	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGACTTTCTCGAGC...........................................	18	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAGGACTTTCTCGAGCC..........................................	21	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAAAGGCGAATGACT.............................................................	19	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCAGAGGAGTTAGTTT......................	19	20	0.05	1	0	1	0	0

droYak3

CAATGAGCATAGACGACACGAAAGTAGAAGTTAAGTTCTCTCCAATCATGCAAATGCAGGTGGAATCCAATGCTGATGATTTGGATATCGACTTGGATGCTTTTCTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACGAGGAACTCGAATTAACCTCTCAGACAAAGGGGAAGGCACAAGAAAACTT---------CCTAGATAACCAGACGGAGAAAGTGGAGAAAAACTGCCTGCAGAAAGAAGCAACGCACAATGATGCACTTGACCTAACGGCCGAAGACTTGAAAGAATTTTTAGAGCCGATGGCAGAGGAAGTAGAATTGATAAGTCAACAA--------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................TGCAGGTGGAATCCAATGCTGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........ATAGACGACACGAAAGTAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................G------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACGAGGAACTC..........................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AT---------------------------------------------CTGAAAATGCAGGCGGAATCCGTTGTTGATGATTTGGATATCGACTTGGATGCTTTTCTAG------------------------------------------------------------------------------------------------------------------------------------AGCCAATGGACAAGGAACTGGAATTAACCTCCCAGACAAAGAGGAAGACACAAGAAAACTT---------TGAAGATCACCAGGCGGAGAAATTAGAGAACAACAGCCAGCAGAAAGAAACAACATACAATGATGCACTGGATCTAACGGCCGAAGACTTGAAAGAATTTCTAGAGCCGATGGCAGAGGAAGTGGAGTTGATAAGTCAACAAAAGAAG--------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCCGATGGCAGAGGAAGTGGAGTT.......................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................ATTAGAGAACAACAGCCAGC...............................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0

droWil2

AA-------------------------------------------------------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA----GAAGAACCAAAATTGGACT--------------TGGATTTGAATGATTTTCTGGAGCCCATGGCAGAGGAGCGGGATTTAATGACACAGCATAAGCAGCAGGA------------------G----------AC--------GCAATTG--------------AAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................................................................................................................................................................................................................................GAACCAAAATTGGACT--------------TGGATTTG.............................................................................................................................	24	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TGGACT--------------TGGATTTGAATGAT.......................................................................................................................	20	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TTGGACT--------------TGGATTTGAATGATTT.....................................................................................................................	23	1	1.00	1	0	0	0	1	0

droGri2

GA-------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_3146

scaffold_13340:17653298-17653534 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-42.3	-42.3	-42.3