ID:

dan_3145

 Coordinate:

scaffold_13340:17500049-17500199 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.4 -8.3 -8.2

Flybase annnotation

exon [dana_GLEANR_19857:1]; CDS [Dana\GF18598-cds]; intron [Dana\GF18598-in]; Antisense to intron [Dana\GF19882-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron-
mature
  1. scaffold_9661:4057-4077 -
  2. scaffold_12671:43769-43789 -
  3. scaffold_12911:1699908-1699928 -
  4. scaffold_12913:135131-135151 -
  5. scaffold_12928:478349-478369 -
  6. scaffold_13034:663157-663177 -
  7. scaffold_13077:121773-121793 -
  8. scaffold_13082:3829044-3829064 -
  9. scaffold_13099:1708720-1708740 -
  10. scaffold_13099:1905962-1905982 -
  11. scaffold_13230:2738080-2738100 -
  12. scaffold_13250:485080-485100 -
  13. scaffold_13333:815672-815692 -
  14. scaffold_13339:876241-876261 -
  15. scaffold_13339:877142-877162 -
  16. scaffold_13339:1917656-1917676 -
  17. scaffold_13339:2679970-2679990 -
  18. scaffold_13499:829343-829363 -
  19. scaffold_13499:840671-840691 -
  20. scaffold_13499:953599-953619 -
  21. scaffold_3985:5419-5439 +
  22. scaffold_9742:4935-4955 +
  23. scaffold_11590:33487-33507 +
  24. scaffold_12671:140425-140445 +
  25. scaffold_13045:338788-338808 +
  26. scaffold_13045:1110526-1110546 +
  27. scaffold_13077:204836-204856 +
  28. scaffold_13111:1341203-1341223 +
  29. scaffold_13168:40395-40415 +
  30. scaffold_13230:2650616-2650636 +
  31. scaffold_13230:3180760-3180780 +
  32. scaffold_13248:3986120-3986140 +
  33. scaffold_13266:15919927-15919947 +
  34. scaffold_13266:19806195-19806215 +
  35. dan_2810  scaffold_13339:2216854-2216874 +
  36. scaffold_13340:1899774-1899794 +
  37. scaffold_13417:4016797-4016817 +
  38. scaffold_13499:378172-378192 +
  39. scaffold_13499:381667-381687 +
  40. scaffold_13499:388065-388085 +
  41. scaffold_3708:2840-2860 +
  42. scaffold_9424:22-42 +
  43. scaffold_12605:14873-14893 +
  44. scaffold_12911:1837336-1837356 +
  45. scaffold_12916:15584632-15584652 +
  46. scaffold_12943:1042214-1042234 +
  47. scaffold_12947:512729-512749 +
  48. scaffold_13034:1081163-1081183 +
  49. scaffold_13079:136979-136999 +
  50. scaffold_13082:983107-983127 +
  51. scaffold_13082:987028-987048 +
  52. scaffold_13089:54962-54982 +
  53. scaffold_13099:614824-614844 +
  54. scaffold_13099:2675731-2675751 +
  55. scaffold_13165:399385-399405 +
  56. scaffold_13258:1346649-1346669 +
  57. scaffold_13266:18701294-18701314 +
  58. scaffold_13272:301249-301269 +
  59. scaffold_13339:4112430-4112450 +
  60. scaffold_13767:1078422-1078442 +
  61. scaffold_343:1523-1543 -
  62. scaffold_3860:155-175 -
  63. scaffold_9013:791-811 -
  64. scaffold_12671:27186-27206 -
  65. scaffold_12671:174004-174024 -
  66. scaffold_12911:1493805-1493825 -
  67. scaffold_13089:218832-218852 -
  68. scaffold_13099:596665-596685 -
  69. scaffold_13099:615776-615796 -
  70. scaffold_13099:1044510-1044530 -
  71. scaffold_13165:220594-220614 -
  72. scaffold_13165:262572-262592 -
  73. scaffold_13250:718793-718813 -
  74. scaffold_13260:1802939-1802959 -
  75. dan_1787  scaffold_13266:4888532-4888552 -
  76. scaffold_13276:50582-50602 -
  77. scaffold_13337:21668935-21668955 -
  78. scaffold_13339:4257632-4257652 -
  79. scaffold_13340:3492277-3492297 -
  80. scaffold_13340:18018479-18018499 -
  81. scaffold_298:1096-1116 +
  82. scaffold_9025:674-694 +
  83. scaffold_10513:124215-124235 +
  84. scaffold_10764:515-535 +
  85. scaffold_12911:1613965-1613985 +
  86. scaffold_13034:787861-787881 +
  87. scaffold_13043:467394-467414 +
  88. scaffold_13043:504194-504214 +
  89. scaffold_13099:222935-222955 +
  90. scaffold_13111:43521-43541 +
  91. scaffold_13165:79880-79900 +
  92. scaffold_13230:3524132-3524152 +
  93. scaffold_13250:1354475-1354495 +
  94. scaffold_13258:189681-189701 +
  95. scaffold_13260:2090110-2090130 +
  96. dan_3145  scaffold_13340:17500077-17500097 +
  97. scaffold_13417:5127953-5127973 +
  98. scaffold_13417:6771602-6771622 +
  99. scaffold_13744:203402-203422 +
  100. scaffold_13767:1523155-1523175 +
  101. scaffold_8908:640-660 -
  102. scaffold_9339:8122-8142 -
  103. scaffold_10149:2098-2118 -
  104. scaffold_10675:900-920 -
  105. scaffold_13248:407517-407537 -
  106. scaffold_13248:2315537-2315557 -
  107. scaffold_13248:3062046-3062066 -
  108. scaffold_13248:3902176-3902196 -
  109. scaffold_13266:2901054-2901074 -
  110. scaffold_13266:18034860-18034880 -
  111. scaffold_13337:5371050-5371070 -
  112. scaffold_13337:7208493-7208513 -
  113. scaffold_13337:15853493-15853513 -
  114. scaffold_13337:21483616-21483636 -
  115. scaffold_13340:1653013-1653033 -
  116. scaffold_13340:13984266-13984286 -
  117. scaffold_13340:14663143-14663163 -
  118. scaffold_13417:258036-258056 -
  119. scaffold_13417:5258302-5258322 -
  120. scaffold_13499:546151-546171 -
star
  1. scaffold_9124:6572-6596 +
  2. scaffold_12576:12701-12725 +
  3. scaffold_12905:142776-142800 +
  4. scaffold_12947:918400-918424 +
  5. scaffold_13034:1245310-1245334 +
  6. scaffold_13057:7973-7997 +
  7. scaffold_13077:219145-219169 +
  8. scaffold_13082:935617-935641 +
  9. scaffold_13228:1017178-1017202 +
  10. scaffold_13230:3086867-3086891 +
  11. scaffold_13250:971507-971531 +
  12. scaffold_13250:2254928-2254952 +
  13. scaffold_13260:191307-191331 +
  14. scaffold_13272:274248-274272 +
  15. scaffold_13337:22503013-22503037 +
  16. scaffold_13337:22522847-22522871 +
  17. dan_3145  scaffold_13340:17500102-17500126 +
  18. scaffold_13417:5317038-5317062 +
  19. scaffold_13499:237061-237085 +
  20. scaffold_13499:476783-476807 +

Sense Strand Reads

-----------------------###########################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAGAACAAATTAAATTGCCCAAAATGGACATGCTCATATCGACTCAGGAGGTAATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCATTGCACACTTTTGACCAAAATTATAATACCCTCTGCAAGGGTATAAAAAGTCGATGCGATGCATATTTTATAGTGTGCAACAACTTTTTTAAATAAAACCATAAGTAGCCTTTAAATTAAAGTGGATTTTGCGTTTATTAAGT
******************************************************************************.....((((((((.(((.................))).))))))))....*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 V106
head
 M044
female body
 M058
embryo
 V039
embryo
 V055
head
..............................................................................TATAGGGTCGGAGATGTCTCC........................................................................................................................................................ 21 0 20 0.90 18 18 0 0 0 0 0
................................................................................TAGGGTCGGAGATGTCTCCTTC..................................................................................................................................................... 22 0 20 0.50 10 0 10 0 0 0 0
.........................GGACATGCTCATATCGACTCAGG........................................................................................................................................................................................................... 23 0 20 0.15 3 0 0 3 0 0 0
................................................................................................TCCTTCACTGCATTGCACACTTTTGAC................................................................................................................................ 27 0 20 0.10 2 0 0 2 0 0 0
...............................................................................ATAGGGTCGGAGATGTCTCCTTC..................................................................................................................................................... 23 0 20 0.10 2 0 0 0 0 2 0
.....................................ATCGACTCATGAGGTAATCCTGATC............................................................................................................................................................................................. 25 1 20 0.05 1 0 0 0 1 0 0
.........................................................................TACTTTATAGGGTCGGAGATGT............................................................................................................................................................ 22 0 20 0.05 1 0 0 1 0 0 0
............................................................................................TGTCTCCTTCACTGCATTGCACACT...................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0
..............................TGCTCATATCGACTCAGGAGGAAA..................................................................................................................................................................................................... 24 1 20 0.05 1 0 0 0 1 0 0
..............................................................................................................................................................................TAAGTAGTGTGCAACAACT.......................................................... 19 3 20 0.05 1 0 0 0 0 0 1
........................TGGACATGCTCATATCGACTCAGGAG......................................................................................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 1 0
...................................................................................................TTCAATGCATTGCACACTTTTGACCAAA............................................................................................................................ 28 1 20 0.05 1 0 0 1 0 0 0
.....................................AGCGACTCAGGAGGTAATCCT................................................................................................................................................................................................. 21 1 20 0.05 1 0 0 0 1 0 0
...................................................................................GGTCGGAGATGTCTCCTTC..................................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0
...............................GCTCATATCGACTCAGGAGGTAATCC.................................................................................................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0 0
.......................................................................................................CTGCATTGCACACTTTTGACCAAAA........................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0
...................................................................................................TTCACTGCATTGCACACTTTTGACCA.............................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0 0
.................................TCATATCGACTCAGGAGGTAATCC.................................................................................................................................................................................................. 24 0 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

GTCTTGTTTAATTTAACGGGTTTTACCTGTACGAGTATAGCTGAGTCCTCCATTAGGACTAGTTCTTATATATATGAAATATCCCAGCCTCTACAGAGGAAGTGACGTAACGTGTGAAAACTGGTTTTAATATTATGGGAGACGTTCCCATATTTTTCAGCTACGCTACGTATAAAATATCACACGTTGTTGAAAAAATTTATTTTGGTATTCATCGGAAATTTAATTTCACCTAAAACGCAAATAATTCA
***************************************************************************************************************************.....((((((((.(((.................))).))))))))....****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V055
head
 V039
embryo
 V105
male body		 V106
head
 M044
female body
.................................................................................................................................................................................AATGACACGTTGTTGAAA........................................................ 18 2 6 0.17 1 0 1 0 0 0 0
..................................................................................................................................................................................ACCACACGTAGTTGACAAAA..................................................... 20 3 15 0.07 1 0 0 1 0 0 0
..............................................CCTCCATTAGGACTAGTTCTTATA..................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
........................................................................................CTCTACAGAGGTAGTGACGTAACGT.......................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
............................................................................................ACAGAGGAAGTGACGTAACGT.......................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0
........................ACCTGTACGAGTATAGCTGAG.............................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 1 0 0
...........................................................................................................TAACGTGTGAAAACTGGTTTTAATATT..................................................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0
.....................................................................................AGCCTCTACAGAGGAAGTGACGTAAC............................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0
.............................TACGAGTATAGCTGAGTCCTCCATTAG................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
...............................CGAGTATAGCTGAGTCCTCCATTAG................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................GAGGAAGTGACGTAACGTGTGAA..................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 1 0
..........................................................................................CTACAGAGGAAGTGACGTAACGTGT........................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 1
.................................AGTATAGCTGAGTCCTCCATT..................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0
...........................TGTACGAGTATAGCTGAGTCCTCCAT...................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:17499999-17500249 + dan_3145 CAGAACAAATT----AAA-TTGCCCA-------------AAATGGACATGCTCATA---TCGACTCAGGAGGTAATCCTGATCAAGA-ATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCATTGCACACTTTT-----GACCAAAATT---ATAATACCCTC---------TG----CA-----AGGGTATAAAAAGTCGAT-GCGA-TGCATATTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------ATAG------TGTG-CAACAACTTTTTTAAATAA--AACCATAA----------------------------------------------------------GTAGCCTTTAAATTAAA-GTGGAT------TTT-------------GCGTT-TA-------------TT---A-----AGT
droBip1 scf7180000396418:69427-69644 + A---------------------------------------GACGGACATGCTCATA---TCAACTCAGGAGGTGATCCTGATCAAGA-ATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTT-----GACCAAAATT---ATAATACCCTC---------TG----CA-----AGGGTATAAAAATATGAAT-TAT-TT---------CAAATAGGTA----------GA------------------CCAATTATAAATAAGAAT-----------------TGGT------------------------------------------------------------------------------------------------------------------ACAT------------------------TT---------------------------------------------AAAGTCAAA-ATTT--GGAC--TTT-------------G-GT-TTT------------------T-----TAT
droKik1 scf7180000302441:2506412-2506647 + A---------------------------------------GACGGACATGGCTAGA---TCGACTCGGCTGCTGATGCTGATCAAGA-ATATATATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAACTTCT-----GACTGAAATT---ATAATACCCT-----------G----CA-----AGGGTATAAAAAAAGGCT-TTAATTGTATTTTTT----ATAGTTTCATAATTATAGATTTTTAATT---------------------------------------------------AAACCTCGTAATTAA----------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------TTATAATTTGA-GAG---------------------------------AGAATTTGAGAGA--ATAA---ATAGT
droFic1 scf7180000453195:40126-40345 + A---------------------------------------GACGTACATACATATT---TCGACTCAGATGGTGATGCTGATCAAGA-ATATATATACTTTATGGGGTCTAAGGTGTCTCCTTCACTGCGTTGCAAACTTCT-----GACTGAAATT---ATAATACCCTTTT-GCTC--TG----CA-----AGGGTATAAAAACATA-------------------TA--------------------------------------------ATAAATAAAAAT-----------------AGGT---------------------------------------------------------------------------------------------AAAAAAAACTTTTCAAGTTA---------A----------------------------------------------------------AC-GGTTTTAAGTTA-A-GCAAAC------ATT-------------GCA--CT--------------GT---T-----TAA
droEle1 scf7180000488650:476-714 + TAGAAAAAGTAACCGAGA-ACGGA--------------CAGACGGACATGGCTAGA---TCGACTCTACTAGTGATGCTGATCAAGA-ATATATATACTTTATAGGGTCAGAAACGTCTCCTTCACTGCGTTGCAAACTTCT-----GACTGAAATT---ATAATACCCTC---------TG----CA-----AGGGTATAAAAAAACGAT----------------------------------------------------------GAA---------AAAATCCTATCCTAT-----------------------------------------------------------------------------------------------------------------TTTT---GTAA--AAACAAAA----------------------------------------------------------GTA--CCTTACATTTTT-GTGCAT---CTATTTAT-------------GC-CT--------------GT---G-----AAG
droRho1 scf7180000770245:2857-3103 + CAGAGAAAG------AAGGGTG----TGTGCAAAGTTTCATACGGACATGCTTATA---TCAACTCAGGAGGTGATCCTGATCAAGA-ATATATATAGTTTATAGGGTCGGAGGTGTCTCCTTTACTGCGTTGCACACTTTT-----GACCAAAATT---ATAATACCCTC---------TG----CA-----AGGGTATAAAAATAAA---------------------------------------------------------------------------------------CTTTTTA-TGTGTCGAACCTTTTAATTAA----------------------------GTCT-----------------------------GAAG--------------------------------------------------------------------------TC-----TGT--------AAGT----------CTTATTTTAAATAG--TG-----TAC----------ATTA-AG-TA-------------TG---A-----AAT
droBia1 scf7180000302291:2202458-2202684 - A---------------------------------------GACGGACATGGCTAGA---TCGACTCGTCTTGTGACGCTGATCAAGA-ATATATATACTTTATGGGGTCGAAAACGTCTCCTTCACTGCGTTGCAAACTTCT-----GACTGAAATC---ATTATACCCTC---------TG----CA-----AGGGTATAAAAATTATA--------------------------------------------------------------------------------------TTTTC---GGTGTT-----TTTTAAC----------------------------------------TTATAA----------------------------CGTC-CT---ACGCTTGGAAATAACATTCTTTA-TTTGGCTTTGAATTTTGAATT--------------------------------------------------------------------AA----------------AT-TT-------------TA---T-----CAA
droTak1 scf7180000415385:95413-95632 + A---------------------------------------GACGGACATGGCTAGA---TCGACTCGTCTTGTGATGCTGATCAAGA-ATATATATACTTTATGGGGTCGGAAATGTCTCCTTCACTGCGTTGCAAACTTCT-----GACTGAAATC---ATAATACCCTC---------TG----CA-----AGGGTATAAAAAAGGA------------------------------------------------------------------------AAAATTCA-------GTTTTAT-TGTGTT-----TATCAAT----------------------------------------ACCTATC-----------------G---AAATGT----AGAAGAAATTTTTTA-----------------------------------------------------------------------------------------AAACGG--AC-----CA------------TTC-GT-TA-------------AA---A-----AGT
droEug1 scf7180000409759:728014-728230 + A---------------------------------------GACGGACATGGGTATA---TCGACTCCCCTATTGATCCTGATCAAGA-ATATATATACTTTATGGGGTCGGAAACGTCTCCTTTGCTGCGTTAAAAACTTCT-----GACCAAAATT---ATAATACCCTC---------TG----CA-----AGGGTATAAAAAGTAA-------------------T-----------------------------------CATA----------------------------CGATG---GGTG---------------------------------------------------------------------------------------------------CATTTT----------------------------------------------------TTATCACTTCTACA--AAAGCTAGTTGCCTTCAGATCAAA-TTCGCT------TT--------------G--GA-CT-------------TC---A-----CCA
dm3 chr3LHet:2004322-2004527 + A---------------------------------------GACGGACATGGCTAGA---TCGAT--------TGATCCTGATCAAGA-ATATATATACTTTATACAGTCAGAATCGCTTCCTTCAGCCTGTTACACACTTC-------AACGAATCT---AGAATACCCCCTT-ATTC--TA----CGAGTAACGGGTATAAAAAGATA-------------------TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------TTAAA--------------------------------TTAAACTCTAACTATTG----------------------------TATAAATTTTA-GTTAAT-------------------------GT-TT-------------T-GATA-----TGT
droSim2 x:20110348-20110569 - A---------------------------------------GACTGACATGGCTAGA---TCGACTCGGCTAATAATCCTGATCAAGA-ATATATATACTTTATATGGTCGGAAACGCTTCCTTCTACCTGTTACATACTTTT-----CAACAAATCT---AGTATACCCTTTT-ACTC--TA----CGAGTAAGGGGTATAAAATTG--AT-GTAG-TACACAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------TATA------CACG-CTAGAAAATATTTGTAAAA--GTCATTAA----------------------------------------------------------ATAATTTTAAAA-------------------------------------AT-AA-------------TG---A-----AAT
droSec2 scaffold_11:2850810-2851031 + AAAATC--------------TG----TATGCT-------------------GAATC---TCAACTCGGCTATTGATCCTGATCAGAATATATATATATTTTATATAGTCGGAAACGCTGCCTTCTACCTGTTACATACTTTT-----CAACGAAACT---AGTATACCCTTCT-ACTC--TA----GGAGTAACGGGTATACAAATTT------------------TATAAAT--GAA----------CA------------------TC-------------------------------------------------AAATAA----------------------------AC-----------------------------------------------------------------------------------------------------CTAATTAATA-----CATA--------AAT----------AAAATTATAAATGG--TT-----TAAT--------------GT-TA-------------TT---A-----AAT
droYak3 3R:20348169-20348422 + A---------------------------------------GACGGACATGGTCATA---TCGACTCGGCTATTGGTCCTGATCAAGA-ATATATATACTTTATATGGTCGGAAACCCTTCCTTCTGCCTGTTACATACTTTT-----CAACGAATCT---AGTATACCCTTTT-ACTC--TA----CGAGTAACGGGTATAAATATTG-TT-ACAT-TGCTCAATAT----------A----------T--------------------GTA---------AAGATTGTA-----------------------------AAATATTTATTTTGCTAATAAAACAAAATTATTGGTTTTAAAT------------------------G---------------------------------------------------------------T-------------------------------AA----------ATTGTATTTAA-ATGG--TT-----T------------------T-CT-------------TA---A-----AGT
droEre2 scaffold_4770:1877690-1877922 - A---------------------------------------GACGGACATGGCCAGA---TCGACTCGGCTATTGATCCTGATCAAGA-ATTTATATACTTTATATAGTCGGAAACGTTTCCTCCTGCCTGTTACATAATTTT-----AATCGAATCT---AGTACACACTC---------TA----CGAGTAACGGGCATAAAAAATCA-------------------CAGATAGATA----------TG------------------TATAT--TATAGTAAGTT-----------------GAAT---------------------------------------------------------------------------------------------ATCAGAAAGTTTGCAAACAGTATAA------------------------TT----------------------------------------------AAATTGAA-ACGA--GGAT--TTT----------------TT-CA-------------TA---A-----CAT
dp5 2:18411679-18411916 - A---------------------------------------GACAGATAGGCCTCAA---TCGATTCGGCTATTGATGCTGATCAAGA-ATATATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCATTTTCACCACAAATCTAATNATACCCCAAT-ACTCATTT----TGAGTATCGGGTATAAAAAAAAGAAC-CAA-TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGT----AACAGAACCTTTT----------------------------------------------------GTAATACTGAGCGATAATAGC--GTT--------GCTCTTAATAG--AG-----TAT------------G-GC-CTG------------------T-----GAA
droPer2 scaffold_10:96754-96973 - CAAACC---------------AGA--------------CGGACAGAAATGGCTCTA---TCGACTCGACTGTTAATGCTGATCAAGA-ATATATATTCCTTATGGAGTCGGAAACGTTTCCTTCTGGGCGTTGCACACATCT-----ATTTAA---------TAGACCCATTT-ACTC--TT----TT-----TGAGGACGAAAATACA---------------------------------------------------------------------------------------CTCTT-----------------------A----------------------------GTTT-----------------------------GTGG------CTTG-TAACTGGCTTTTTA-----------------------------------------------------------------------------------------------------------TACCCGATACTCAA-AA-TGAGTATTGGGGTAT--ATTA-----GAT
droWil2 scf2_1100000004558:2056076-2056298 + AAGTTG----------AT-TTGCA--------------CAGACAGACATGACTATA---TCGACTCAGCTTCTCATGCTGATCAAGA-ATATATATACTTTATGGGGTCGGAAAAGTCTCCTTCTGTGCGTTACAAACATCT-----GACCAATTTT---ATAATACTCTC---------TG----CA-----AGGGTATAAAAATAGA-------------------CGTT-------------------------------------CAA------------TTATTATGCCAT-----------------------------------------------------------------------------------------------------------------TCTTTGAATGA--TTCTTTA-TGATTC----------------------------------------------------------TTTGAATTCGA-CTGA------------T--------------TCTT--------------TT---A-----AAA
droVir3 scaffold_10120:893-1140 - TAGAAACAG------ACAGACGGA--------------CAGACGGACATGGCTATA---TCGACTCGGCTGTTGATGCTGATTAAGA-ATATATATACTTTATGGGGTCGGAGATGTCTCCTTCTATGCGTTACACATTTCA-----CGACAAAATT---ATAATACCCTC---------TG----CA-----AGGGTATTATAAAAATAAG-CAA--------------------------------------------------------------------------------ATTTT---TATGCT-----TTTTAAT----------------------------------------CTCTAAC---------------------------------------ACTTTCAAAAAA--AAAAAAAG----------------------------------------------------------ATATTCAATAAATATAAAATGA--TT-----AC----------------AT-TA-------------T-ATTA-----CGT
droMoj3 scaffold_6500:884352-884629 - CAAAAACCG------AAA-TTGCATA--------AAT-TGCAGGGACAGGGCCAAA---TCAACTCAGCTCGTCACCCTGATCAAGA-ATATATATACTTTGTGGGGTCTGCCACGCCTCCTTCTCCCTGTTACATACATTT-----CAACAAAACC---ATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATAAAAAAAAAAAG-AAA-TTCATTTG------------------------------------------------------------T-----------------TGGT-----------AAA---------------------------------------------AATAATTTTAAAAAATAATA----AAATAT----AA--------------------AAATATT------------------------------ATTAATA-----CTTAAT-------AT--ATT--------GC-------------TC--TTT-------------G-TT-TTA------------------TGATTTACA
droGri2 scaffold_14906:4174500-4174722 - TTAAAGTC-------------ACT-A-------------AAATCTGCGTGTTCATATAGACGGTTCGGCTGCTGATAATAACGAAGA-ACATATATACCTTATGGGGTCGGAGATGCTACCTTTTGCCTACTACTCACTTTT-----GCGGAAAATC---TTTACACCCATTTTACTCATTT------------------------------------------TTA----ATAGTTACAAGGTAA----GTTCAAATAGAAACCATA---------------------------------------------------AGTTAA----------------------------GC-------------------------------------------------------------------------------------------------------------------------------------------ATAACACTTGA-ATGG--TA----TTC------------CC-GGT-TA-------------TA---A-----AAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CAGAACAAATT----AAA-TTGCCCA-------------AAATGGACATGCTCATA---TCGACTCAGGAGGTAATCCTGATCAAGA-ATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCATTGCACACTTTT-----GACCAAAATT---ATAATACCCTC---------TG----CA-----AGGGTATAAAAAGTCGAT-GCGA-TGCATATTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------ATAG------TGTG-CAACAACTTTTTTAAATAA--AACCATAA----------------------------------------------------------GTAGCCTTTAAATTAAA-GTGGAT------TTT-------------GCGTT-TA-------------TT---A-----AGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................TATAGGGTCGGAGATGTCTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.90180000180
......................................................................................................TAGGGTCGGAGATGTCTCCTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.50100000010
...........................................GGACATGCTCATA---TCGACTCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.153300000
......................................................................................................................TCCTTCACTGCATTGCACACTTTT-----GAC...................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102200000
.....................................................................................................ATAGGGTCGGAGATGTCTCCTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102002000
...............................................................................................TACTTTATAGGGTCGGAGATGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
..................................................................................................................TGTCTCCTTCACTGCATTGCACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
..........................................TGGACATGCTCATA---TCGACTCAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000
.........................................................................................................GGTCGGAGATGTCTCCTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
.................................................GCTCATA---TCGACTCAGGAGGTAATCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.............................................................................................................................CTGCATTGCACACTTTT-----GACCAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000
.........................................................................................................................TTCACTGCATTGCACACTTTT-----GACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
...................................................TCATA---TCGACTCAGGAGGTAATCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
droBip1
A---------------------------------------GACGGACATGCTCATA---TCAACTCAGGAGGTGATCCTGATCAAGA-ATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTT-----GACCAAAATT---ATAATACCCTC---------TG----CA-----AGGGTATAAAAATATGAAT-TAT-TT---------CAAATAGGTA----------GA------------------CCAATTATAAATAAGAAT-----------------TGGT------------------------------------------------------------------------------------------------------------------ACAT------------------------TT---------------------------------------------AAAGTCAAA-ATTT--GGAC--TTT-------------G-GT-TTT------------------T-----TATSizeHit CountTotal NormTotal
No Reads
droKik1
A---------------------------------------GACGGACATGGCTAGA---TCGACTCGGCTGCTGATGCTGATCAAGA-ATATATATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAACTTCT-----GACTGAAATT---ATAATACCCT-----------G----CA-----AGGGTATAAAAAAAGGCT-TTAATTGTATTTTTT----ATAGTTTCATAATTATAGATTTTTAATT---------------------------------------------------AAACCTCGTAATTAA----------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------TTATAATTTGA-GAG---------------------------------AGAATTTGAGAGA--ATAA---ATAGTSizeHit CountTotal NormTotal
No Reads
droFic1
A---------------------------------------GACGTACATACATATT---TCGACTCAGATGGTGATGCTGATCAAGA-ATATATATACTTTATGGGGTCTAAGGTGTCTCCTTCACTGCGTTGCAAACTTCT-----GACTGAAATT---ATAATACCCTTTT-GCTC--TG----CA-----AGGGTATAAAAACATA-------------------TA--------------------------------------------ATAAATAAAAAT-----------------AGGT---------------------------------------------------------------------------------------------AAAAAAAACTTTTCAAGTTA---------A----------------------------------------------------------AC-GGTTTTAAGTTA-A-GCAAAC------ATT-------------GCA--CT--------------GT---T-----TAASizeHit CountTotal NormTotal
No Reads
droEle1
TAGAAAAAGTAACCGAGA-ACGGA--------------CAGACGGACATGGCTAGA---TCGACTCTACTAGTGATGCTGATCAAGA-ATATATATACTTTATAGGGTCAGAAACGTCTCCTTCACTGCGTTGCAAACTTCT-----GACTGAAATT---ATAATACCCTC---------TG----CA-----AGGGTATAAAAAAACGAT----------------------------------------------------------GAA---------AAAATCCTATCCTAT-----------------------------------------------------------------------------------------------------------------TTTT---GTAA--AAACAAAA----------------------------------------------------------GTA--CCTTACATTTTT-GTGCAT---CTATTTAT-------------GC-CT--------------GT---G-----AAGSizeHit CountTotal NormTotal
No Reads
droRho1
CAGAGAAAG------AAGGGTG----TGTGCAAAGTTTCATACGGACATGCTTATA---TCAACTCAGGAGGTGATCCTGATCAAGA-ATATATATAGTTTATAGGGTCGGAGGTGTCTCCTTTACTGCGTTGCACACTTTT-----GACCAAAATT---ATAATACCCTC---------TG----CA-----AGGGTATAAAAATAAA---------------------------------------------------------------------------------------CTTTTTA-TGTGTCGAACCTTTTAATTAA----------------------------GTCT-----------------------------GAAG--------------------------------------------------------------------------TC-----TGT--------AAGT----------CTTATTTTAAATAG--TG-----TAC----------ATTA-AG-TA-------------TG---A-----AATSizeHit CountTotal NormTotal
No Reads
droBia1
A---------------------------------------GACGGACATGGCTAGA---TCGACTCGTCTTGTGACGCTGATCAAGA-ATATATATACTTTATGGGGTCGAAAACGTCTCCTTCACTGCGTTGCAAACTTCT-----GACTGAAATC---ATTATACCCTC---------TG----CA-----AGGGTATAAAAATTATA--------------------------------------------------------------------------------------TTTTC---GGTGTT-----TTTTAAC----------------------------------------TTATAA----------------------------CGTC-CT---ACGCTTGGAAATAACATTCTTTA-TTTGGCTTTGAATTTTGAATT--------------------------------------------------------------------AA----------------AT-TT-------------TA---T-----CAASizeHit CountTotal NormTotal
No Reads
droTak1
A---------------------------------------GACGGACATGGCTAGA---TCGACTCGTCTTGTGATGCTGATCAAGA-ATATATATACTTTATGGGGTCGGAAATGTCTCCTTCACTGCGTTGCAAACTTCT-----GACTGAAATC---ATAATACCCTC---------TG----CA-----AGGGTATAAAAAAGGA------------------------------------------------------------------------AAAATTCA-------GTTTTAT-TGTGTT-----TATCAAT----------------------------------------ACCTATC-----------------G---AAATGT----AGAAGAAATTTTTTA-----------------------------------------------------------------------------------------AAACGG--AC-----CA------------TTC-GT-TA-------------AA---A-----AGTSizeHit CountTotal NormTotal
No Reads
droEug1
A---------------------------------------GACGGACATGGGTATA---TCGACTCCCCTATTGATCCTGATCAAGA-ATATATATACTTTATGGGGTCGGAAACGTCTCCTTTGCTGCGTTAAAAACTTCT-----GACCAAAATT---ATAATACCCTC---------TG----CA-----AGGGTATAAAAAGTAA-------------------T-----------------------------------CATA----------------------------CGATG---GGTG---------------------------------------------------------------------------------------------------CATTTT----------------------------------------------------TTATCACTTCTACA--AAAGCTAGTTGCCTTCAGATCAAA-TTCGCT------TT--------------G--GA-CT-------------TC---A-----CCASizeHit CountTotal NormTotal
No Reads
dm3
A---------------------------------------GACGGACATGGCTAGA---TCGAT--------TGATCCTGATCAAGA-ATATATATACTTTATACAGTCAGAATCGCTTCCTTCAGCCTGTTACACACTTC-------AACGAATCT---AGAATACCCCCTT-ATTC--TA----CGAGTAACGGGTATAAAAAGATA-------------------TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------TTAAA--------------------------------TTAAACTCTAACTATTG----------------------------TATAAATTTTA-GTTAAT-------------------------GT-TT-------------T-GATA-----TGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................ATATACTTTATACAGTCAGAATCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200200200000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000300000000000000000000000000
...................................................................................................TTATACAGTCAGAATCGCTTCCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................24115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070002000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000001100000000
............................................................................................ATATACTTTATACAGTCAGAATCGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................26114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010210000200000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000110000000
...................................................................................................TTATACAGTCAGAATCGCTTCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................23112.00120000000000000000000001000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000
...................................................................................................TTATACAGTCAGAATCGCTTCCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................27111.00110000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000001010000000
...........................................................................TCCTGATCAAGA-ATATATATACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24209.351870000000000000000000000700000000000000010210000000011000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000130000000000000000000000000000000000000032002308000000000000000000003510437000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000200000000
..............................................................................................................................................................................................TAACGGGTATAAAAAGATA-------------------TATGG--GA............................................................................................................................................................................................................................................................................................................................................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------TTAAA--------------------------------TTAAAC..................................................................................................................2519.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001000000000010100000000000000000000000000000000000000000000000000000000000000002000000000000000110000000000000000001000000
................................................................................................................................TGTTACACACTTC-------AACGAATCT---AGAATA...................................................................................................................................................................................................................................................................................................................................................................................................................2818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030101120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TTATACAGTCAGAATCGCTTCCTTCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010001120000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...................................................................................................TTATACAGTCAGAATCGCTTCCTTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000
...............................................................................................TACTTTATACAGTCAGAATCGCTTCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000400000000000000000001000000
....................................................................................................................................................................................................................................TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------TTAAA--------------------------------TTAAACTC................................................................................................................2717.0070000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
......................................................................................................................................................................CCCCCTT-ATTC--TA----CGAGTAACGGG....................................................................................................................................................................................................................................................................................................................................................................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TTATACAGTCAGAATCGCTTCCTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................TAACGGGTATAAAAAGATA-------------------TATGG--G.............................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CATGGCTAGA---TCGAT--------TGATCCTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000100000000000000000000000000
..........................................................................................................................TCAGCCTGTTACACACTTC-------AACGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TCGCTTCCTTCAGCCTGTTACACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TGTTACACACTTC-------AACGAATCT---AGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TATATACTTTATACAGTCAGAATCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................CACTTC-------AACGAATCT---AGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TATAAAAAGATA-------------------TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------T............................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TTACACACTTC-------AACGAATCT---AGAATA...................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TA-------------------TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------TTAAA--------------------------------TTAAAC..................................................................................................................2714.0040000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000
.............................................................................................TATACTTTATACAGTCAGAATCGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TACAGTCAGAATCGCTTCCTTCAGCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TTTATACAGTCAGAATCGCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................A-------------------TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------TTAAA--------------------------------TTAAAC..................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
.....................................................................................................................................................................................................TATAAAAAGATA-------------------TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------.............................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------TTAAA--------------------------------TTAAA...................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................ACATGGCTAGA---TCGAT--------TGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TATAAAAAGATA-------------------TATGG--GAG----------T................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
......................................................................................................................TCCTTCAGCCTGTTACACACTTC-------AAC..................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TAAAAAGATA-------------------TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------T............................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TCGAT--------TGATCCTGATCAAGA-ATATATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TA-------------------TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------TTAAA--------------------------------TTA.....................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000
......................................................................................................TACAGTCAGAATCGCTTCCTTCAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................TCCTGATCAAGA-ATATATATACTTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26203.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000100000000000000000000000000000000000000000000000000520000000000000000000000000000000000000000000000000000000000000000000000000000000000401000000000000000000000000
...........................................................TCGAT--------TGATCCTGATCAAGA-ATATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................ATATATACTTTATACAGTCAGAATCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TCCTGATCAAGA-ATATATATACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23202.705400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100050000000000000000000000000000000000002000080000000000000000000001240030500000000000000000000000000000000000000000000000000000000000000000000100000000300000000000000000001000000
....................................................................................................................................................................................................................................TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------TTAAA--------------------------------TT......................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................CATGGCTAGA---TCGAT--------TGATCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
..................................................................................................TTTATACAGTCAGAATCGCTTCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000
..................................................................................................TTTATACAGTCAGAATCGCTTCCTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GACATGGCTAGA---TCGAT--------TGATCCTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TATACTTTATACAGTCAGAATCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
.....................................................................................................ATACAGTCAGAATCGCTTCCTTCAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TATAAAAAGATA-------------------TATGG--GAG----------TA------------------GC-------------------------------------------------A.........................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TATACAGTCAGAATCGCTTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTCAGCCTGTTACACACTTC-------AACGAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................GAATCGCTTCCTTCAGCCTGTTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2422.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CACACTTC-------AACGAATCT---AGAATACC.................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTCAGCCTGTTACACACTTC-------AACGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TATACAGTCAGAATCGCTTCCTTCAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TA-------------------TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------TTAAA--------------------------------TTAAACT.................................................................................................................2812.0020000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CATGGCTAGA---TCGAT--------TGATCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................TTATACAGTCAGAATCGCTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TATACAGTCAGAATCGCTTCCTTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................TATATACTTTATACAGTCAGAATCGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TGTTACACACTTC-------AACGAATCT---AGAATAC..................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TAAAAAGATA-------------------TATGG--GAG----------TA------------------GC-------------------------------------------------AG-------------------------------------------------------------------------------------------TT...........................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CACACTTC-------AACGAATCT---AGAATACCCC...............................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
A---------------------------------------GACTGACATGGCTAGA---TCGACTCGGCTAATAATCCTGATCAAGA-ATATATATACTTTATATGGTCGGAAACGCTTCCTTCTACCTGTTACATACTTTT-----CAACAAATCT---AGTATACCCTTTT-ACTC--TA----CGAGTAAGGGGTATAAAATTG--AT-GTAG-TACACAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------TATA------CACG-CTAGAAAATATTTGTAAAA--GTCATTAA----------------------------------------------------------ATAATTTTAAAA-------------------------------------AT-AA-------------TG---A-----AATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................CTAGA---TCGACTCGGCTAATAATCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000200000000
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................................................................................................................................TGTTACATACTTTT-----CAACAAATCT---AGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................2821.50300000000300000000
........................................GACTGACATGGCTAGA---TCGACTCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2541.25500000001000040000
........................................................................................ATATATATACTTTATATGGTCGGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................26201.2024000000024000000000
............................................................................................................................TACCTGTTACATACTTTT-----CAACAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
...........................................................TCGACTCGGCTAATAATCCTGATCAAGA-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2921.00200000000000020000
.........................................................................................................................TTCTACCTGTTACATACTTTT-----CAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...........................................TGACATGGCTAGA---TCGACTCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.86600000042000000000
........................................................................TAATCCTGATCAAGA-ATATATATACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.80400010020100000000
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......................................................................................................................TCCTTCTACCTGTTACATACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.6513000000101110000000
...............................................................................................TACTTTATATGGTCGGAAACGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.6012000000012000000000
.........................................................................................TATATATACTTTATATGGTCGGAAACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.5511000000000000110000
.............................................................................................TATACTTTATATGGTCGGAAACGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.5511000000110000000000
................................................................TCGGCTAATAATCCTGATCAAGA-ATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000010000000000
.........................................................................................................................................................................TTTT-ACTC--TA----CGAGTAAGGGGTATAAAA.............................................................................................................................................................................................................................................................................................................................................................................2820.50100000000001000000
........................................................................................ATATATATACTTTATATGGTCGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.45900000000000090000
...........................................TGACATGGCTAGA---TCGACTCGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.43300000030000000000
.....................................................................................................................TTCCTTCTACCTGTTACATACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................22200.35700000011140000000
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.........................................................................AATCCTGATCAAGA-ATATATATACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.33200000000200000000
........................................................................................ATATATATACTTTATATGGTCGGAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.25500000005000000000
............................................................................................................................................................T---AGTATACCCTTTT-ACTC--TA----CGAGT..........................................................................................................................................................................................................................................................................................................................................................................................25200.25500000000050000000
..........................................................................................ATATATACTTTATATGGTCGGAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.25500000000000050000
........................................GACTGACATGGCTAGA---TCGACTCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.25100000000000010000
..........................................CTGACATGGCTAGA---TCGACTCGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.25100000001000000000
........................................GACTGACATGGCTAGA---TCGACTCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.25100000000000001000
...........................................................................................................................................TTT-----CAACAAATCT---AGTATACCCTTTT-...........................................................................................................................................................................................................................................................................................................................................................................................................2640.25100000001000000000
.........................................ACTGACATGGCTAGA---TCGACTCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.25100000001000000000
...............................................................................................TACTTTATATGGTCGGAAACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.20400000000003001000
................................................TGGCTAGA---TCGACTCGGCTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.20100000000000001000
...............................................................................................TACTTTATATGGTCGGAAACGCTTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.20400000003100000000
............................................................................................................CGGAAACGCTTCCTTCTACCTGTTACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................27110.18200000001010000000
........................................GACTGACATGGCTAGA---TCGACTCGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.17100000001000000000
..................................................................................................................................................................TATACCCTTTT-ACTC--TA----CGAGTAAGGGGTA..................................................................................................................................................................................................................................................................................................................................................................................3060.17100000000001000000
........................................GACTGACATGGCTAGA---TCGACTCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.17100000010000000000
................................................................................................................................................................................TC--TA----CGAGTAAGGGGT...................................................................................................................................................................................................................................................................................................................................................................................16130.15200000000002000000
................................................................................................................................................................................TC--TA----CGAGTAAGGGGTATA................................................................................................................................................................................................................................................................................................................................................................................19130.15200000000002000000
...............................................................................................TACTTTATATGGTCGGAAACGCTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.15300000020001000000
.....................................................................................................ATATGGTCGGAAACGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.15300000000003000000
....................................................................................................................................ACATACTTTT-----CAACAAATCT---AGT......................................................................................................................................................................................................................................................................................................................................................................................................................2370.14100000000001000000
....................................................................................................................................................................TACCCTTTT-ACTC--TA----CGAGTAAGGGG....................................................................................................................................................................................................................................................................................................................................................................................2670.14100000000001000000
.........................................................................................................................................................................TTTT-ACTC--TA----CGAGTAAGGGGTATA................................................................................................................................................................................................................................................................................................................................................................................2580.13100000000001000000
......................................................................................................TATGGTCGGAAACGCTTCCTTCTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................25170.12200000000002000000
..........................................................................................................................................................................TTT-ACTC--TA----CGAGTAAGGGG....................................................................................................................................................................................................................................................................................................................................................................................2090.11100000010000000000
...........................................................................................................................................................................TT-ACTC--TA----CGAGTAAGGGGT...................................................................................................................................................................................................................................................................................................................................................................................2090.11100000000001000000
...........................................................................................................................................................................TT-ACTC--TA----CGAGTAAGGGGTA..................................................................................................................................................................................................................................................................................................................................................................................2190.11100000000100000000
.............................................................................................................................................T-----CAACAAATCT---AGTATACCCTTT.............................................................................................................................................................................................................................................................................................................................................................................................................2390.11100000000000010000
...........................................TGACATGGCTAGA---TCGACTCGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2490.11100000010000000000
.........................................................................................TATATATACTTTATATGGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10200000000000020000
...........................................................................................................TCGGAAACGCTTCCTTCTACCTGTTACATA................................................................................................................................................................................................................................................................................................................................................................................................................................................30100.10100000010000000000
.............................................................................................TATACTTTATATGGTCGGAAACGCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10200000001000010000
...........................................................................TCCTGATCAAGA-ATATATATACTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200000000020000000
...........................................................................................................................CTACCTGTTACATACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................16200.10200000002000000000
...........................................TGACATGGCTAGA---TCGACTCGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.09100000010000000000
...........................................................................................................TCGGAAACGCTTCCTTCTACCTGTTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................26120.08100000010000000000
................................................................................................................................................................................TC--TA----CGAGTAAGGGGTA..................................................................................................................................................................................................................................................................................................................................................................................17130.08100000000001000000
...........................................................................................................TCGGAAACGCTTCCTTCTACCTGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................25130.08100000000100000000
...........................................TGACATGGCTAGA---TCGACTCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23130.08100000010000000000
................................................................................................................................................................................TC--TA----CGAGTAAGGGG....................................................................................................................................................................................................................................................................................................................................................................................15140.07100000000001000000
............................................................................................................................................................................T-ACTC--TA----CGAGTAAGG......................................................................................................................................................................................................................................................................................................................................................................................16140.07100000000001000000
...........................................................................................................TCGGAAACGCTTCCTTCTACCTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.07100000000100000000
...........................................TGACATGGCTAGA---TCGACTCGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.06100000000000010000
........................................................................TAATCCTGATCAAGA-ATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18160.06100000000100000000
...................................................................................................TTATATGGTCGGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000001000000000
.........................................................................................TATATATACTTTATATGGTCGGAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000100000000
...........................................................................................................................................................CT---AGTATACCCTTTT-ACTC--TA----CGAGT..........................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000000010000
.........................................................................................TATATATACTTTATATGGTCGGAAACGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05100000000000010000
................................................TGGCTAGA---TCGACTCGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000100000000
....................................................................................................TATATGGTCGGAAACGCTTCCTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000100000000
...............................................................................................TACTTTATATGGTCGGAAACGCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000000010000
..........................................................................................ATATATACTTTATATGGTCGGAAACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000000000010000
...........................................................................TCCTGATCAAGA-ATATATATACTTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000010000000000
............................................................................................ATATACTTTATATGGTCGGAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000001000000
..............................................................................................ATACTTTATATGGTCGGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000100000000
.....................................................................................GA-ATATATATACTTTATATGGTCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000010000000
................................................................................................................................................................................TC--TA----CGAGTAAGGGA....................................................................................................................................................................................................................................................................................................................................................................................15200.05100000010000000000
........................................................................................ATATATATACTTTATATGGTCGGAAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100000000000010000
..................................................GCTAGA---TCGACTCGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
.........................................................................................TATATATACTTTATATGGTCGGAAACGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05100000010000000000
......................................................................................A-ATATATATACTTTATATGGTCGGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000000000010000
..................................................................................................TTTATATGGTCGGAAACGCTTCCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000100000000
................................................................................................................................................................................TC--TA----CGAGTAAGGGGA...................................................................................................................................................................................................................................................................................................................................................................................16200.05100000010000000000
droSec2
AAAATC--------------TG----TATGCT-------------------GAATC---TCAACTCGGCTATTGATCCTGATCAGAATATATATATATTTTATATAGTCGGAAACGCTGCCTTCTACCTGTTACATACTTTT-----CAACGAAACT---AGTATACCCTTCT-ACTC--TA----GGAGTAACGGGTATACAAATTT------------------TATAAAT--GAA----------CA------------------TC-------------------------------------------------AAATAA----------------------------AC-----------------------------------------------------------------------------------------------------CTAATTAATA-----CATA--------AAT----------AAAATTATAAATGG--TT-----TAAT--------------GT-TA-------------TT---A-----AATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................TCAACTCGGCTATTGATCCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.1411000
droYak3
A---------------------------------------GACGGACATGGTCATA---TCGACTCGGCTATTGGTCCTGATCAAGA-ATATATATACTTTATATGGTCGGAAACCCTTCCTTCTGCCTGTTACATACTTTT-----CAACGAATCT---AGTATACCCTTTT-ACTC--TA----CGAGTAACGGGTATAAATATTG-TT-ACAT-TGCTCAATAT----------A----------T--------------------GTA---------AAGATTGTA-----------------------------AAATATTTATTTTGCTAATAAAACAAAATTATTGGTTTTAAAT------------------------G---------------------------------------------------------------T-------------------------------AA----------ATTGTATTTAA-ATGG--TT-----T------------------T-CT-------------TA---A-----AGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................T-----CAACGAATCT---AGTATACCCTTTT-AC.........................................................................................................................................................................................................................................................................................................................................................................................................26200.8517001700000000
..........................................................................................................................................................TCT---AGTATACCCTTTT-ACTC--TA----CGAG...........................................................................................................................................................................................................................................................................................................................................................................................26200.10200200000000
.........................................ACGGACATGGTCATA---TCGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10220000000000
............................................................................................................................................................................T-ACTC--TA----CGAGTAACGGGTA..................................................................................................................................................................................................................................................................................................................................................................................20200.10200200000000
................................................TGGTCATA---TCGACTCGGCTATTGGTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
......................................................................................................TATGGTCGGAAACCCTTCCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000010000
.....................................................................................................ATATGGTCGGAAACCCTTCCTTCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000010000
..............................................................................TGATCAAGA-ATATATATACTTTATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
..................................................................................................................CCCTTCCTTCTGCCTGTTACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
......................................................................ATTGGTCCTGATCAAGA-ATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000
..................................................GTCATA---TCGACTCGGCTATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
................................................................................................ACTTTATATGGTCGGAAACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
............................................................................................ATATACTTTATATGGTCGGAAACCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100100000000
...........................................................................................................................................................................TT-ACTC--TA----CGAGTAACGGGT...................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
droEre2
A---------------------------------------GACGGACATGGCCAGA---TCGACTCGGCTATTGATCCTGATCAAGA-ATTTATATACTTTATATAGTCGGAAACGTTTCCTCCTGCCTGTTACATAATTTT-----AATCGAATCT---AGTACACACTC---------TA----CGAGTAACGGGCATAAAAAATCA-------------------CAGATAGATA----------TG------------------TATAT--TATAGTAAGTT-----------------GAAT---------------------------------------------------------------------------------------------ATCAGAAAGTTTGCAAACAGTATAA------------------------TT----------------------------------------------AAATTGAA-ACGA--GGAT--TTT----------------TT-CA-------------TA---A-----CATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
A---------------------------------------GACAGATAGGCCTCAA---TCGATTCGGCTATTGATGCTGATCAAGA-ATATATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCATTTTCACCACAAATCTAATNATACCCCAAT-ACTCATTT----TGAGTATCGGGTATAAAAAAAAGAAC-CAA-TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGT----AACAGAACCTTTT----------------------------------------------------GTAATACTGAGCGATAATAGC--GTT--------GCTCTTAATAG--AG-----TAT------------G-GC-CTG------------------T-----GAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................TACTTTATGGGGTCGGAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2550000005000
........................................................................................................................CTTCTGGACGTTACACACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2550500000000
...................................................................GCTATTGATGCTGATCAAGA-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040400000000
............................................................................................................................................................................T-ACTCATTT----TGAGTATCGGG....................................................................................................................................................................................................................................................................................................................................................................................20200.1530300000000
..................................................................................................................................................................................ATTT----TGAGTATCGGGTATAAA..............................................................................................................................................................................................................................................................................................................................................................................21200.1530000003000
....................................................................................................TATGGGGTCGGAAACGATTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000300000
..........................................................................................................................................................................................TGAGTATCGGGTATAAAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................22200.1020000000110
.....................................................................................................................TTCCTTCTGGACGTTACACACATCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020200000000
....................................................TCAA---TCGATTCGGCTATTGATGCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26190.0510100000000
.......................................................................TTGATGCTGATCAAGA-ATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
............................................................................................................................................................................T-ACTCATTT----TGAGTATCGGGTATAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................29200.0510100000000
.....................................................................................................ATGGGGTCGGAAACGATTCCTTCTGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.0510010000000
...........................................................................................TATATACTTTATGGGGTCGGAAACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000010
...................................................................................................................GATTCCTTCTGGACGTTACACACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510010000000
........................................................................................ATATATATACTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.0510000000010
droPer2
CAAACC---------------AGA--------------CGGACAGAAATGGCTCTA---TCGACTCGACTGTTAATGCTGATCAAGA-ATATATATTCCTTATGGAGTCGGAAACGTTTCCTTCTGGGCGTTGCACACATCT-----ATTTAA---------TAGACCCATTT-ACTC--TT----TT-----TGAGGACGAAAATACA---------------------------------------------------------------------------------------CTCTT-----------------------A----------------------------GTTT-----------------------------GTGG------CTTG-TAACTGGCTTTTTA-----------------------------------------------------------------------------------------------------------TACCCGATACTCAA-AA-TGAGTATTGGGGTAT--ATTA-----GATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................TTCCTTATGGAGTCGGAAACGTTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...........................................................................TGCTGATCAAGA-ATATATATTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501010000
.....................................................................................................ATGGAGTCGGAAACGTTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.202000002
...................................................................................................................................TGCACACATCT-----ATTTAA---------TAGACCCATT.............................................................................................................................................................................................................................................................................................................................................................................................................2760.171010000
.......................................................................................................................................CACATCT-----ATTTAA---------TAGACCCATTT-ACTC--.....................................................................................................................................................................................................................................................................................................................................................................................................2860.171010000
...........................................................................................................................................................................................................................................................................................................TT-----------------------A----------------------------GTTT-----------------------------GTGG------CTTG-TAACTGG.................................................................................................................................................................2260.171010000
............................................................................................................................................................................................................................................................................................................T-----------------------A----------------------------GTTT-----------------------------GTGG------CTTG-TAACTGGCT...............................................................................................................................................................2360.171010000
............................................................................................................CGGAAACGTTTCCTTCTGGGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.141010000
......................................................................................................TGGAGTCGGAAACGTTTCCTTCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.131010000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTA-----------------------------------------------------------------------------------------------------------TACCCGATACTCAA-AA-TG...........................21200.102020000
.......................................................................TTAATGCTGATCAAGA-ATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
droWil2
AAGTTG----------AT-TTGCA--------------CAGACAGACATGACTATA---TCGACTCAGCTTCTCATGCTGATCAAGA-ATATATATACTTTATGGGGTCGGAAAAGTCTCCTTCTGTGCGTTACAAACATCT-----GACCAATTTT---ATAATACTCTC---------TG----CA-----AGGGTATAAAAATAGA-------------------CGTT-------------------------------------CAA------------TTATTATGCCAT-----------------------------------------------------------------------------------------------------------------TCTTTGAATGA--TTCTTTA-TGATTC----------------------------------------------------------TTTGAATTCGA-CTGA------------T--------------TCTT--------------TT---A-----AAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................TTCTGTGCGTTACAAACATCT-----GACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................26200.7014000140
...........................................................................TGCTGATCAAGA-ATATATATACTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.20404000
......................................................TA---TCGACTCAGCTTCTCATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.15303000
..............................................................................................ATACTTTATGGGGTCGGAAAAGTCTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................27100.10101000
...........................................................................TGCTGATCAAGA-ATATATATACTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.10200020
.................................................................................................................................................................TAATACTCTC---------TG----CA-----AGGGT...................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
......................................................................................................................................................CAATTTT---ATAATACTCTC---------TG----CA-----AGGG....................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
...........................................................................................................................CTGTGCGTTACAAACATCT-----GACCAA................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
.........................................................................................................................................................TTTT---ATAATACTCTC---------TG----CA-----AG......................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.....................................................ATA---TCGACTCAGCTTCTCATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
........................................................................................................................................................ATTTT---ATAATACTCTC---------TG----CA-----AGGG....................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.......................................................A---TCGACTCAGCTTCTCATGCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
...................................................................................................................................TACAAACATCT-----GACCAATTTT---ATA......................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
droVir3
TAGAAACAG------ACAGACGGA--------------CAGACGGACATGGCTATA---TCGACTCGGCTGTTGATGCTGATTAAGA-ATATATATACTTTATGGGGTCGGAGATGTCTCCTTCTATGCGTTACACATTTCA-----CGACAAAATT---ATAATACCCTC---------TG----CA-----AGGGTATTATAAAAATAAG-CAA--------------------------------------------------------------------------------ATTTT---TATGCT-----TTTTAAT----------------------------------------CTCTAAC---------------------------------------ACTTTCAAAAAA--AAAAAAAG----------------------------------------------------------ATATTCAATAAATATAAAATGA--TT-----AC----------------AT-TA-------------T-ATTA-----CGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................TTACACATTTCA-----CGACAAAATT---.........................................................................................................................................................................................................................................................................................................................................................................................................................22200.306000000000000000000000000600000000000000000000000000000000000000
..................................................................................................................................TTACACATTTCA-----CGACAAAATT---ATAAT....................................................................................................................................................................................................................................................................................................................................................................................................................27200.306000000000000000000000000000000000006000000000000000000000000000
......................................................................................................TGGGGTCGGAGATGTCTCCTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000020000000000000000000000000000000000000000000000000000
...........................................................................................TATATACTTTATGGGGTCGGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000000000000000000002000000000000000000000000000000000000000000
....................CGGA--------------CAGACGGACATGGCTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000000000000000000000000000200000000000000000000000000000
..................................................................................................................................TTACACATTTCA-----CGACAAAATT---ATAATAC..................................................................................................................................................................................................................................................................................................................................................................................................................29200.102000000000000000000000000000000000020000000000000000000000000000
..................................................................................................TTTATGGGGTCGGAGATGTCTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................................TCTATGCGTTACACATTTCA-----CGACA.................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................TTACACATTTCA-----CGACAAAATT---ATA......................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
TAGAAACAG------ACAGACGGA--------------CAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
.................................................................................TTAAGA-ATATATATACTTTATGGGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000100000000000000000000000000000000000000
........G------ACAGACGGA--------------CAGACGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000010000000000000000000000000000000
.................................................................................TTAAGA-ATATATATACTTTATGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................TTACACATTTCA-----CGACAAAATT---AT.......................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................TTACACATTTCA-----CGACAAAATT---A........................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................TAAGA-ATATATATACTTTATGGGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000100000000000000000000000000000000
.................................................................CGGCTGTTGATGCTGATTAAGA-ATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000001000000000000000000000000000000000000
droMoj3
CAAAAACCG------AAA-TTGCATA--------AAT-TGCAGGGACAGGGCCAAA---TCAACTCAGCTCGTCACCCTGATCAAGA-ATATATATACTTTGTGGGGTCTGCCACGCCTCCTTCTCCCTGTTACATACATTT-----CAACAAAACC---ATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATAAAAAAAAAAAG-AAA-TTCATTTG------------------------------------------------------------T-----------------TGGT-----------AAA---------------------------------------------AATAATTTTAAAAAATAATA----AAATAT----AA--------------------AAATATT------------------------------ATTAATA-----CTTAAT-------AT--ATT--------GC-------------TC--TTT-------------G-TT-TTA------------------TGATTTACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................TACATACATTT-----CAACAAAACC---ATT......................................................................................................................................................................................................................................................................................................................................................................................................................24200.153300000
....................................................CAAA---TCAACTCAGCTCGTCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153300000
.................................................................CAGCTCGTCACCCTGATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
..................................................................AGCTCGTCACCCTGATCAAGA-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
CAAAAACCG------AAA-TTGCATA--------AAT-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
droGri2
TTAAAGTC-------------ACT-A-------------AAATCTGCGTGTTCATATAGACGGTTCGGCTGCTGATAATAACGAAGA-ACATATATACCTTATGGGGTCGGAGATGCTACCTTTTGCCTACTACTCACTTTT-----GCGGAAAATC---TTTACACCCATTTTACTCATTT------------------------------------------TTA----ATAGTTACAAGGTAA----GTTCAAATAGAAACCATA---------------------------------------------------AGTTAA----------------------------GC-------------------------------------------------------------------------------------------------------------------------------------------ATAACACTTGA-ATGG--TA----TTC------------CC-GGT-TA-------------TA---A-----AAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:36 AM