ID:

dan_3136

 Coordinate:

scaffold_13340:16645487-16645637 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.5 -18.5 -17.8

Flybase annnotation

exon [dana_GLEANR_19823:2]; CDS [Dana\GF18566-cds]; intron [Dana\GF18566-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TATCGTTTTTCTGCAGCAGGGGTTTTGCCGCTGACGCAGCCGATCAGCTGGTAAGTGGGCGGCCGGTGGGTGGCGGATGGTGGGTGGCTAGTTTGGGGCTGCTTGTTTGTTTTCGTTTGGTTTGGCGCTGCGCACTTGTTGCCGTTTTGGCCCAAACGCCTTTGTTGAAACGCCTTCGAGTGCATGTTTACGACCCGAATACCACACACCCGCACAAAGGTGCCTATGTACAGCGGTTCCAGTCTTTGTTG
******************************************************..((((((((...((.((((............)))).))...))))))))......********************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V106
head
 V105
male body		 M044
female body
 M058
embryo
 V039
embryo
 V055
head
......................................................GTGGGCGGCCGGTGGGTGGCG................................................................................................................................................................................ 21 0 1 51.00 51 48 3 0 0 0 0
.................................................................GTGGGTGGCGGATGGTGGGT...................................................................................................................................................................... 20 0 2 1.50 3 2 1 0 0 0 0
......................................................GTGGGCGGCCGGTGGGAGGCG................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
......................................................GTGGGCGGCCGGAGGGTGGCG................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................GTTTGGGGCTGCTTGTTTGT............................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0
......................................................GTGGGCGGCCGGTGGTTGGCG................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
......................................................GTGGGCGGCCGGTGGGTGGCGGA.............................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
......................................................GTGGGCGGCCGGTGGGTGG.................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0
......................................................GTTGGCGGCCGGTGGGTGGCG................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
......................................................ATGGGCGGCCGGTGGGTGGCG................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................TTTCGTTTGGTTTGGCGCTGC........................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0
......................................................GTGGACGGCCGGTGGGTGGCG................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
......................................................GTGGGCGGCCTGTGGGTGGCG................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
........................................................GGGCGGCCGGTGGGTGGCGGATGGTGG........................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
.......................................................TGGGCGGCCGGTGGGTGGCG................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................................TGAAACGCCTTCGAGTGCATGT................................................................ 22 0 1 1.00 1 0 1 0 0 0 0
......................................................GTGGGCGGCCGGTGGGTGGC................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
TATCGTTTTTCTGCAGCAGGGGTTT.................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0
......................................................GTTGGCGGCCGGTGGGTGGC................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
......................................................GTGGTCGGCCGGTGGGTGGCG................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
......................................................GTGGGCGGCCGGGGGGTGGCG................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
......................................................GTGGGCGGCCGGTGAGTGGCG................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................................................GGTCGCTAGTTTGGGGC........................................................................................................................................................ 17 1 2 0.50 1 0 0 0 0 0 1
................................GACGCAGTCGCTCAGCTGGT....................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 1 0 0 0
................................GACGCAGCCGATCAGCTGGAGT..................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0
................................GACGCAGCTGATCAGCTGGA....................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 1 0 0 0
...................................................................CGGTGGCGGATTGTGGCTGGCT.................................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0 0 0
............................................CAGCTAGCAAGTGGGCGGCTGG......................................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 1
................................................................GATGTGTGGCGGATGTTGGGT...................................................................................................................................................................... 21 3 9 0.11 1 0 0 1 0 0 0
..................................................................................GGTGGCTTGTTTGTGGCTGCC.................................................................................................................................................... 21 3 15 0.07 1 0 0 0 1 0 0
.......................................................................................................................GTTTGGCTCTGCACACTCG................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1
...........................................................................................TTAGGGGCTGCTGGTCTGTTT........................................................................................................................................... 21 3 20 0.05 1 0 0 1 0 0 0
.....................................................................GTGGCGGATTGTGGCTGG.................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

ATAGCAAAAAGACGTCGTCCCCAAAACGGCGACTGCGTCGGCTAGTCGACCATTCACCCGCCGGCCACCCACCGCCTACCACCCACCGATCAAACCCCGACGAACAAACAAAAGCAAACCAAACCGCGACGCGTGAACAACGGCAAAACCGGGTTTGCGGAAACAACTTTGCGGAAGCTCACGTACAAATGCTGGGCTTATGGTGTGTGGGCGTGTTTCCACGGATACATGTCGCCAAGGTCAGAAACAAC
*********************************************************************************************************************************************..((((((((...((.((((............)))).))...))))))))......****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V055
head
 V039
embryo
..............................................................................................CCACGACGAACAAACAAAA.......................................................................................................................................... 19 1 1 1.00 1 1 0 0
.............................CGACAGCCCCGGCTAGTCGA.......................................................................................................................................................................................................... 20 3 5 0.20 1 0 1 0
........................................................CCCGCCCGCCACACACGGCCT.............................................................................................................................................................................. 21 3 5 0.20 1 0 1 0
.............................................................................................ACCCCCACGAACAAGCAAGA.......................................................................................................................................... 20 3 6 0.17 1 1 0 0
.............................................................................................ACCCCGACGAACAATGAAAAA......................................................................................................................................... 21 3 10 0.10 1 1 0 0
........................................................................................................CGAACAAAAGCAAACCAGA................................................................................................................................ 19 2 13 0.08 1 1 0 0
..........................................................................................CCACCCCCGACGAACAAA............................................................................................................................................... 18 2 14 0.07 1 1 0 0
..............................................................................CCACCCAAAGATCAAACCCA......................................................................................................................................................... 20 3 17 0.06 1 1 0 0
..........................................................................................CAAACCCCAAAGAACAAAC.............................................................................................................................................. 19 2 19 0.05 1 1 0 0
........................................................................................ACCAAACCCCAACGAACAAC............................................................................................................................................... 20 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:16645437-16645687 + dan_3136 TA-----TC---GTTTT-----------TCTGCAGCAGGGGTTTTGCCGCTGACGCAGCCGATCAGCTGGTAAGTGGGCGGCCGGTGGGTGGC---------------------G----------------------------------GAT------------------GGTGGGTGGCTAGTTTG-----GGGCTGCT-T---GTTTGTTTTCGTTTG---GTT-TG--------------G----------------CGCTGCGCACTTGTTGCCG-----TTTTGGCCCAAACGCCTTTGTTGAAACGC-C-TT--CGAGTGCATGTTTACGACCCGAATACCACACACCCGCACAAAG----------GTGCCTATGTACAGCGGT-----TCCAGTCTTTGTTG
droBip1 scf7180000396424:161314-161572 + TA-----TG---TTTTT-----------GCTGCAGCATTGGTTTTGCCGCTGACGCAGCCGATCAGCTGGTAAGTGGGGTGTGGGTGGGTGGC---------------------G----------------------------------AAT------------------TGTGGGCGGCTAGTTTG--GGGGGGCTGTT-T---GTTTGTTTTCGTTTG---GTT-TG--------------G----------------CGCTGCGCACTTGTTGCCG-----TTTTGGCCAAGACCCCTTTGTTG----GA-TTTT--TAAGTGCATGTTTACGACCCAAAGACCACACACCCGCACAA--CAGCACATATGTATGTATGTATGGCGGT-----TCCAGTCTTTGTTG
droKik1 scf7180000297719:57036-57314 + TAG----CT---TTGTTGCTGTGCCTGAGCTGCCGCGGGAGCTATGCCGCTGACGCAGTTGATCAGCTGGTAAGTGGGCGGACGGTGGGCGGT---------------------GGGCGG---------------------------TGGGCGGCATGGGGCCAGTGGGCGCTGGGCGGC----TTG--GAGGCGCCGCT-T---GTTTGTTTTCGTTTC-GTGTT-TG--------------G----------------CGCTGCGCACTTGTTGCCA-----TTTTGGCCAAGACCCTGTTATTG----GC-GTTC--CAAGTGCATGTTTACCACC-----------CACCCACACACAGACGCACACATGCG------GTTATCGGT-----TCCAGTCTTTGTTG
droFic1 scf7180000454055:2584800-2585022 - TG-----CT---ATTAA-----------GCTGCGGCGAGAGTGTTGCCAGTGACGCAGCCGATCAGCTGGTGAGTGGGCGTTTAGTGGGAGAC---------------------GGGCTGTTGT---------------TTGGTTAGTGGGC---------------------GGGCGTTTATTTTG-----GGGCGGCT-T---GTTTATTTT----------------------------------------------CACTGCGCACTTGTTGGCA-----TTTTGGCCAAGACCCCGTTTTTG----GC-CTTC--CAAGAGCATATTCTCCA-------------TAC--------------------CCG------CTTATCGCT-----TCCAGTCTTTGTTG
droEle1 scf7180000491280:726647-726854 - TG-----CT---TTTGT-----------GTTGCGGCGAGAGTTTCGCCGGTGACGCAGCCGATCAGCTGGTAAGTGGGTGGT----GG---------------------------------------------------GAGGAATGTGGGC------------------GGTGGGCGTTTATT-TG-----GGGCTGTTTGTTTGTTTGTTTT----------------------------------------------GGCTGCGCACTTGTTGCC------TTTTGGCCAAGACCCCGTTATTG----GC-GCTC--CGAATGCATGTCTTTCAA------------------------G----------ACG------CTTATCACT-----TCCAGTCTTTGTTG
droRho1 scf7180000779166:11823-12018 + TG-----CTGCTTTTGA-----------GCTGCGGCGAGAGTTTCGCCGGTGACGCAGTCGATCAGCTGGTGAGTGGGCGGT----GG---------------------------------------------------GCGGCAAGAGGGT------------------GGGGTTCGTTTAT----------------T-T---GTTTGTTTT----------------------------------------------TGCTGCGCACTTGTTGCC------TTTTGGCCAAGACCCCGATATTG----GC-GTTC--CAATTGCATGCCTTTCAC-----------------------------------GCG------CTTATCACT-----TCCAGTCTTTGTTG
droBia1 scf7180000302113:2952992-2953206 - TG-----CT---TTTCT-----------GCTGCGGCGAGAGCTTCGCCGCTGACGCAGTTGATCAGCTGGTAAGTGGGCGGTTTTTGGGTGGC---------------------AG--------------------TGGGTGGCCTCTGAGC------------------GGTGGGCGGAATTTTCA-----AGGTT--------GCCTGCTTC----------------------------------------------CACTGCGCACTTGTTGCC------ATTTGCCCCAGACCCCGTTTCTG----GC-CTTC--CAGTTGCATGTCTTCCAC-----------------------------------TCG------CTTATCACT----TTTCAGCCTTTGTTG
droTak1 scf7180000415286:733549-733761 - TG-----CT---CTTTT-----------GCTGCGGTGAGAGTTTCGCCGCTGACGCAGTCGATCAGCTGGTAAGTGGGCGGTGCGTGG---------------------------------------------------GTGGTAAGTGGGC------------------GGTGGGCGTTAATTTCA-----AGGCTGTT-T---GTTTGTTTT----------------------------------------------CACTGCGCACTTGTTGCC------ATTTGGCAGAGACCCCATTTTCG----GC-CTTC--CAATTGCATGTTTTCCAC-----------------------------------TCG------CTTATCACTTGCTTTCCAGTCTTTGTTG
droEug1 scf7180000409770:139845-139973 - TG-----TT---GTTTT-----------GCTGCGGCGAATGTTTTGCCGTTGACGCAAATGATCAGCTGGTAAGTGGGCGGTGTTCAGTGG------------------------G--------------------TGGGTGGTAAGTGAGC-----------GGTGGGTGGTGTGTTGCAAGTTTTCCGTGGTGCAGCT-T---GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3R:22688055-22688254 - TG-----CTGCTTTTCT-----------GCAGCGGTGAGAGTGTCGCCGCTGACGCAGCCAATCAGCTGGTAAGTGGGCGGTT--------------------------------------------------------------AGTGGGC------------------GTGGGTCGTTTATTTTG-----GGGGTGTT-T---GTTTGTTTT----------------------------------------------CACTGCGCACTTGTTGCC------TTTTGGTCGAGACCCCGTTTAAG----GC-CCCC--CAATTGCATGTTTTTCGC-----------------------------------TCG------CTTATCACT-----TCCAGTCTTTGTTG
droSim2 3r:22147750-22147956 - TG-----CT---ATTCT-----------TCTGCGGCGAGAGTGTCGCCGCTGACGCAGCCAATCAGCTGGTAAGTGGGCGTATAGTTG---------------------------------------------------GTGGTCGTTGGGC------------------GGCGGGCGTTTATTTTG-----GGGCTGTT-T---GTTTGTTTT----------------------------------------------CACTGCGCACTTGTTGCC------TTTTGGCCGAGACCCCGTTCAAG----GC-C-CC--CAATTGCATGTTTTTCGC-----------------------------------CCG------CTTATCACT-----TCCAGTCTTTGTTG
droSec2 scaffold_13:1461553-1461760 - TG-----CT---TTTCT-----------GCTGCGGCGAGAGTGTCGCCGCTGACGCAGCCAATCAGCTGGTAAGTGGGCGTATAGTTG---------------------------------------------------GTGGTCGGTGGGC------------------GGCGGGCGTTTATTTTG-----GGGCTGTT-T---GTTTGTTTT----------------------------------------------CACTGCGCACCTGTTGCC------TTTTGGCCGAGACCCCGTTCAAG----GC-CCCC--CAATTGCATGTTTTTCCC-----------------------------------CCG------CTTATCACT-----TCCAGTCTTTGTTG
droYak3 3R:23803693-23803927 + dya_1130 TG-----CT---TTTCT-----------GCTGCGGCGAGAGTGTCGCCGCTGACGCAGCCGATCAGCTGGTAAGTGGGCGGTTGGTGGGTGGT---------------------GGGTGG-TTCGTGGTCCGTGGG----CGGGAAGTGGGC------------------GGCGGGCGTTTATTTTG-----GGGCTGTT-T---GTTTGTTTT----------------------------------------------CACTGCGCACTTGTTGCC------TTTTGGCCGATTCCCCGTTTAAC----GC-CTCCCGCAATTGCATGTTTTTCGA-----------------------------------CCG------CTTATCACT-----TCCAGTCTTTGTTG
droEre2 scaffold_4820:5352739-5352958 + TG-----CT---TTCCT-----------GCTGCGGTGAGAGTTTCGCCGCTGACGCAGTCGATCAGCTGGTAAGTGGGCGCTTAGTGGGAAGT------------------------------------CCGTGGG----CGACAAGTGGGC------------------GGCGGGCGTTTATTTTG-----GGGCTGTT-T---GTTTGTTTT----------------------------------------------TACTGCGCACTTGTTGCC------TTTTAGCTGAGACACAGCTTAAC----GCCCCCC--CAATTGCATGTTTTTCAA-----------------------------------CCG------CTTATCACT-----TCCAGTCTTTGTTG
dp5 2:4780219-4780380 + TCTCCTACT---TTTGC-----------TATGCGGCG---G---------TTCTGCGGCCGATCAGCTGGTATGTTTGGC------------------------------------------------------------TAGGAGGGGAGC------------------GACTGGAGTTGGTTTGG-----TGCCGATT-G---GTTTGCCCTGGCT---------------------TGTGGCGCCACAAACAGCTGTGAATGCGCACTTGTTGCCGCATTCTATTGGCCAAGA------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_19:477206-477367 + TCTCCTACT---TTTGC-----------TATGCGGCG---G---------TTCTGCGGCCGATCAGCTGGTATGTTTGGC------------------------------------------------------------TAGGAGGGGAGC------------------GACTGGAGTTGGTTTGG-----TGCCGATT-G---GTTTGCCCTGGCT---------------------TGTGGCGCCACAAACAGCTGTGAATGCGCACTTGTTGCCGCATTCTATTGGCCAAGA------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004943:2627342-2627540 + TC-----TT---GTTTTTCTTGGCCTATGTTGCGGCGCCAGTTTTGCGGCTGACGCAGATGATCAGCTGGTAAGTTTGGTAAAGGTGTGAGTAACTGTGTATGCGTGTGTGTATGTGTGT-TTTGTTGTTTTGCAG----ATGG-----AAT------------------GGTGAG-------------AACGGGAAATT-T---GTTTGTTTTCGTTAT---GTT-TC-------------------------------GTATGAGCACTTGTTGCCA-----TGTTAGCC----------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:12019173-12019348 - TT-----GC---GTTTG-----------CATGCAGTGTAAGCGCTGGGGATGACGCA---AATCAGCTGGTGAGTGGTTGCCGGGAGATGGG------------------------------------------------TTGAGGGTGTGC------------------TGCAAGATTTTAT----------------T-G---GTTTGTTTTTGTTACCGTGTTTGGGCCACTCGCTT--ACAGCTGTACACATTTCTTACTGCGCACTTGTTGCCA-----TGTTAAC-----------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TA-----TC---GTTTT-----------TCTGCAGCAGGGGTTTTGCCGCTGACGCAGCCGATCAGCTGGTAAGTGGGCGGCCGGTGGGTGGC---------------------G----------------------------------GAT------------------GGTGGGTGGCTAGTTTG-----GGGCTGCT-T---GTTTGTTTTCGTTTG---GTT-TG--------------G----------------CGCTGCGCACTTGTTGCCG-----TTTTGGCCCAAACGCCTTTGTTGAAACGC-C-TT--CGAGTGCATGTTTACGACCCGAATACCACACACCCGCACAAAG----------GTGCCTATGTACAGCGGT-----TCCAGTCTTTGTTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................GTGGGCGGCCGGTGGGTGGC---------------------G----------------------------------.....................................................................................................................................................................................................................................................................21151.00510000348
....................................................................................GTGGGTGGC---------------------G----------------------------------GAT------------------GGTGGGT.........................................................................................................................................................................................................................................2021.503000012
......................................................................................................................................................................................GTTTG-----GGGCTGCT-T---GTTTGT.......................................................................................................................................................................................................2011.001000010
.........................................................................GTGGGCGGCCGGTGGGTGGC---------------------G----------------------------------GA...................................................................................................................................................................................................................................................................2311.001000001
.........................................................................GTGGGCGGCCGGTGGGTGG..............................................................................................................................................................................................................................................................................................................................1911.001000010
...................................................................................................................................................................................................................TTTCGTTTG---GTT-TG--------------G----------------CGCTGC................................................................................................................................................2111.001001000
...........................................................................GGGCGGCCGGTGGGTGGC---------------------G----------------------------------GAT------------------GGTGG...........................................................................................................................................................................................................................................2711.001000001
..........................................................................TGGGCGGCCGGTGGGTGGC---------------------G----------------------------------.....................................................................................................................................................................................................................................................................2011.001100000
.................................................................................................................................................................................................................................................................................................................TGAAACGC-C-TT--CGAGTGCATGT...............................................................................2211.001000010
.........................................................................GTGGGCGGCCGGTGGGTGGC---------------------........................................................................................................................................................................................................................................................................................................2011.001000001
TA-----TC---GTTTT-----------TCTGCAGCAGGGGTTT..............................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...................................................GACGCAGCCGATCAGCTGGAGT.................................................................................................................................................................................................................................................................................................................................................2220.501000010
droBip1
TA-----TG---TTTTT-----------GCTGCAGCATTGGTTTTGCCGCTGACGCAGCCGATCAGCTGGTAAGTGGGGTGTGGGTGGGTGGC---------------------G----------------------------------AAT------------------TGTGGGCGGCTAGTTTG--GGGGGGCTGTT-T---GTTTGTTTTCGTTTG---GTT-TG--------------G----------------CGCTGCGCACTTGTTGCCG-----TTTTGGCCAAGACCCCTTTGTTG----GA-TTTT--TAAGTGCATGTTTACGACCCAAAGACCACACACCCGCACAA--CAGCACATATGTATGTATGTATGGCGGT-----TCCAGTCTTTGTTGSizeHit CountTotal NormTotal
No Reads
droKik1
TAG----CT---TTGTTGCTGTGCCTGAGCTGCCGCGGGAGCTATGCCGCTGACGCAGTTGATCAGCTGGTAAGTGGGCGGACGGTGGGCGGT---------------------GGGCGG---------------------------TGGGCGGCATGGGGCCAGTGGGCGCTGGGCGGC----TTG--GAGGCGCCGCT-T---GTTTGTTTTCGTTTC-GTGTT-TG--------------G----------------CGCTGCGCACTTGTTGCCA-----TTTTGGCCAAGACCCTGTTATTG----GC-GTTC--CAAGTGCATGTTTACCACC-----------CACCCACACACAGACGCACACATGCG------GTTATCGGT-----TCCAGTCTTTGTTGSizeHit CountTotal NormTotal
No Reads
droFic1
TG-----CT---ATTAA-----------GCTGCGGCGAGAGTGTTGCCAGTGACGCAGCCGATCAGCTGGTGAGTGGGCGTTTAGTGGGAGAC---------------------GGGCTGTTGT---------------TTGGTTAGTGGGC---------------------GGGCGTTTATTTTG-----GGGCGGCT-T---GTTTATTTT----------------------------------------------CACTGCGCACTTGTTGGCA-----TTTTGGCCAAGACCCCGTTTTTG----GC-CTTC--CAAGAGCATATTCTCCA-------------TAC--------------------CCG------CTTATCGCT-----TCCAGTCTTTGTTGSizeHit CountTotal NormTotal
No Reads
droEle1
TG-----CT---TTTGT-----------GTTGCGGCGAGAGTTTCGCCGGTGACGCAGCCGATCAGCTGGTAAGTGGGTGGT----GG---------------------------------------------------GAGGAATGTGGGC------------------GGTGGGCGTTTATT-TG-----GGGCTGTTTGTTTGTTTGTTTT----------------------------------------------GGCTGCGCACTTGTTGCC------TTTTGGCCAAGACCCCGTTATTG----GC-GCTC--CGAATGCATGTCTTTCAA------------------------G----------ACG------CTTATCACT-----TCCAGTCTTTGTTGSizeHit CountTotal NormTotal
No Reads
droRho1
TG-----CTGCTTTTGA-----------GCTGCGGCGAGAGTTTCGCCGGTGACGCAGTCGATCAGCTGGTGAGTGGGCGGT----GG---------------------------------------------------GCGGCAAGAGGGT------------------GGGGTTCGTTTAT----------------T-T---GTTTGTTTT----------------------------------------------TGCTGCGCACTTGTTGCC------TTTTGGCCAAGACCCCGATATTG----GC-GTTC--CAATTGCATGCCTTTCAC-----------------------------------GCG------CTTATCACT-----TCCAGTCTTTGTTGSizeHit CountTotal NormTotal
No Reads
droBia1
TG-----CT---TTTCT-----------GCTGCGGCGAGAGCTTCGCCGCTGACGCAGTTGATCAGCTGGTAAGTGGGCGGTTTTTGGGTGGC---------------------AG--------------------TGGGTGGCCTCTGAGC------------------GGTGGGCGGAATTTTCA-----AGGTT--------GCCTGCTTC----------------------------------------------CACTGCGCACTTGTTGCC------ATTTGCCCCAGACCCCGTTTCTG----GC-CTTC--CAGTTGCATGTCTTCCAC-----------------------------------TCG------CTTATCACT----TTTCAGCCTTTGTTGSizeHit CountTotal NormTotal
No Reads
droTak1
TG-----CT---CTTTT-----------GCTGCGGTGAGAGTTTCGCCGCTGACGCAGTCGATCAGCTGGTAAGTGGGCGGTGCGTGG---------------------------------------------------GTGGTAAGTGGGC------------------GGTGGGCGTTAATTTCA-----AGGCTGTT-T---GTTTGTTTT----------------------------------------------CACTGCGCACTTGTTGCC------ATTTGGCAGAGACCCCATTTTCG----GC-CTTC--CAATTGCATGTTTTCCAC-----------------------------------TCG------CTTATCACTTGCTTTCCAGTCTTTGTTGSizeHit CountTotal NormTotal
No Reads
droEug1
TG-----TT---GTTTT-----------GCTGCGGCGAATGTTTTGCCGTTGACGCAAATGATCAGCTGGTAAGTGGGCGGTGTTCAGTGG------------------------G--------------------TGGGTGGTAAGTGAGC-----------GGTGGGTGGTGTGTTGCAAGTTTTCCGTGGTGCAGCT-T---GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TG-----CTGCTTTTCT-----------GCAGCGGTGAGAGTGTCGCCGCTGACGCAGCCAATCAGCTGGTAAGTGGGCGGTT--------------------------------------------------------------AGTGGGC------------------GTGGGTCGTTTATTTTG-----GGGGTGTT-T---GTTTGTTTT----------------------------------------------CACTGCGCACTTGTTGCC------TTTTGGTCGAGACCCCGTTTAAG----GC-CCCC--CAATTGCATGTTTTTCGC-----------------------------------TCG------CTTATCACT-----TCCAGTCTTTGTTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................GGTGAGAGTGTCGCCGCTGACGCAGCC..............................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GTGGGCGGTT--------------------------------------------------------------AGTGGGC------------------GTGGG...........................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001000000000000000000010000
.........................................................................GTGGGCGGTT--------------------------------------------------------------AGTGGGC------------------GTGGGT..........................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000010000000
.......................................AGTGTCGCCGCTGACGCA.................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GAGAGTGTCGCCGCTGACGC..................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........TTTTCT-----------GCAGCGGTGAGAGTGTCGCC..........................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............TTTCT-----------GCAGCGGTGAGAGTGTCGCC..........................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................GTGTCGCCGCTGACGCAGCC..............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GTGGGCGGTT--------------------------------------------------------------AGTGGGC------------------GTGGGTCTA.......................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................GAGTGTCGCCGCTGACGC..................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GTCGCCGCTGACGCAGCCA.............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GTGGGCGGTT--------------------------------------------------------------AGTGGGC------------------GTGGGTC.........................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................GTGTCGCCGCTGACGCAGCCAATC..........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GTCGCCGCTGACGCAGCCAATC..........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TGAGAGTGTCGCCGCTGACGCAGC...............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................TTTAAG----GC-CCCC--CAATTGCAT.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GGTGAGAGTGTCGCCGCTGAC....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TTCT-----------GCAGCGGTGAGAGTGTCGCCGC........................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........TTTTCT-----------GCAGCGGTGAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................GGTAAGTGGGCGGTT--------------------------------------------------------------AGTGGGC------------------GTGG............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TTCT-----------GCAGCGGTGAGAGTGTCGCC..........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............TTTCT-----------GCAGCGGTGAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........TGCTTTTCT-----------GCAGCGGTGAGAGT................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TGAGAGTGTCGCCGCTGACGC..................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TGAGAGTGTCGCCGCTGACG...................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................GCC------TTTTGGTCGAGACCC...............................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GCC------TTTTGGTCGAGACCCC..............................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
....................................GAGAGTGTCGCCGCTGACGCAGCCA.............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AGAGTGTCGCCGCTGACGCA.................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................CTGACGCAGCCAATCAGCTGAA...................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GTGGGCGGTT--------------------------------------------------------------AGTGGGC------------------GTGGGA..........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....................................................ACGCAGCCAATCAGCTGGTAA.................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TGGGCGGTT--------------------------------------------------------------AGTGGGC------------------GTGGG...........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TCT-----------GCAGCGGTGAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CAATTGCATGTTTTTCGC-----------------------------------TCG------............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............TTCT-----------GCAGCGGTGAGAGTGTCGC...........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....................................GAGAGTGTCGCCGCTGACGCAGC...............................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................GTGGGTCGTTTATTTTG-----GGGGT.....................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..............................................................................................................................................................................................................TTTGTTTT----------------------------------------------CACTGCGCACTT..........................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CTTTTCT-----------GCAGCGGTGAGAGTGT..............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
droSim2
TG-----CT---ATTCT-----------TCTGCGGCGAGAGTGTCGCCGCTGACGCAGCCAATCAGCTGGTAAGTGGGCGTATAGTTG---------------------------------------------------GTGGTCGTTGGGC------------------GGCGGGCGTTTATTTTG-----GGGCTGTT-T---GTTTGTTTT----------------------------------------------CACTGCGCACTTGTTGCC------TTTTGGCCGAGACCCCGTTCAAG----GC-C-CC--CAATTGCATGTTTTTCGC-----------------------------------CCG------CTTATCACT-----TCCAGTCTTTGTTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................GCTGACGCAGCCAATCAGCTGA....................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
................................................................................TATAGTTG---------------------------------------------------GTGGTCGTTG.....................................................................................................................................................................................................................................................................1811.00100001000000000000
............................................................AATCAGCTGGTAAGTGGGC...........................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
droSec2
TG-----CT---TTTCT-----------GCTGCGGCGAGAGTGTCGCCGCTGACGCAGCCAATCAGCTGGTAAGTGGGCGTATAGTTG---------------------------------------------------GTGGTCGGTGGGC------------------GGCGGGCGTTTATTTTG-----GGGCTGTT-T---GTTTGTTTT----------------------------------------------CACTGCGCACCTGTTGCC------TTTTGGCCGAGACCCCGTTCAAG----GC-CCCC--CAATTGCATGTTTTTCCC-----------------------------------CCG------CTTATCACT-----TCCAGTCTTTGTTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................GAGAGTGTCGCCGCTGACGC..................................................................................................................................................................................................................................................................................................................................................................2011.0011000
droYak3
TG-----CT---TTTCT-----------GCTGCGGCGAGAGTGTCGCCGCTGACGCAGCCGATCAGCTGGTAAGTGGGCGGTTGGTGGGTGGT---------------------GGGTGG-TTCGTGGTCCGTGGG----CGGGAAGTGGGC------------------GGCGGGCGTTTATTTTG-----GGGCTGTT-T---GTTTGTTTT----------------------------------------------CACTGCGCACTTGTTGCC------TTTTGGCCGATTCCCCGTTTAAC----GC-CTCCCGCAATTGCATGTTTTTCGA-----------------------------------CCG------CTTATCACT-----TCCAGTCTTTGTTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................GAGAGTGTCGCCGCTGACGC..................................................................................................................................................................................................................................................................................................................................................................2015.00501000040000
.........................................................................GTGGGCGGTTGGTGGGTGGT---------------------GG......................................................................................................................................................................................................................................................................................................2214.00400200020000
...........................................................................................................................................................................................................................................................................CACTTGTTGCC------TTTTGGCCGATTCCCC..............................................................................................................2712.00200200000000
..............TCT-----------GCTGCGGCGAGAGTGTCGCCGCT.......................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.............................CTGCGGCGAGAGTGTCGC...........................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
............TTTCT-----------GCTGCGGCGAGAGTGTCG............................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.........................................................................GTGGGCGGTTGGTGGGTGGT---------------------GGGT....................................................................................................................................................................................................................................................................................................2411.00101000000000
............................................................................................................................GTGGTCCGTGGG----CGGGAAGTGGG...................................................................................................................................................................................................................................................................2311.00100000010000
..........................................................................TGGGCGGTTGGTGGGTGGT---------------------GGG.....................................................................................................................................................................................................................................................................................................2220.50100000010000
..........................................................................TGGGCGGTTGGTGGGTGGT---------------------GG......................................................................................................................................................................................................................................................................................................2120.50100000010000
..........................................................................TGGGCGGTTGGTGGGTGGT---------------------G.......................................................................................................................................................................................................................................................................................................2020.50101000000000
................................................................................GTTGGTGGGTGGT---------------------GGGTGG-TAA..............................................................................................................................................................................................................................................................................................22200.05101000000000
droEre2
TG-----CT---TTCCT-----------GCTGCGGTGAGAGTTTCGCCGCTGACGCAGTCGATCAGCTGGTAAGTGGGCGCTTAGTGGGAAGT------------------------------------CCGTGGG----CGACAAGTGGGC------------------GGCGGGCGTTTATTTTG-----GGGCTGTT-T---GTTTGTTTT----------------------------------------------TACTGCGCACTTGTTGCC------TTTTAGCTGAGACACAGCTTAAC----GCCCCCC--CAATTGCATGTTTTTCAA-----------------------------------CCG------CTTATCACT-----TCCAGTCTTTGTTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................GCTGACGCAGTCGATCAG........................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.......CT---TTCCT-----------GCTGCGGTGAGA..................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
....................................GAGAGTTTCGCCGCTGACGCAGTCGATC..........................................................................................................................................................................................................................................................................................................................................................2811.0010000100
......................................GAGTTTCGCCGCTGACGCAGT...............................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.....................................AGAGTTTCGCCGCTGACGCAGTCGATC..........................................................................................................................................................................................................................................................................................................................................................2711.0010000100
.G-----CT---TTCCT-----------GCTGCGGTGAGAGTTTC.............................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
......................................GAGTTTCGCCGCTGACGCAGTCGAT...........................................................................................................................................................................................................................................................................................................................................................2511.0010000100
dp5
TCTCCTACT---TTTGC-----------TATGCGGCG---G---------TTCTGCGGCCGATCAGCTGGTATGTTTGGC------------------------------------------------------------TAGGAGGGGAGC------------------GACTGGAGTTGGTTTGG-----TGCCGATT-G---GTTTGCCCTGGCT---------------------TGTGGCGCCACAAACAGCTGTGAATGCGCACTTGTTGCCGCATTCTATTGGCCAAGA------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................C-----------TATGCGGCG---G---------TTCTGCGGCC..............................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................CG---G---------TTCTGCGGCCGATCAG........................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................................................TGGTATGTTTGGC------------------------------------------------------------TAGGAGGG......................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................CT---------------------TGTGGCGCCACAAACAGCTT.......................................................................................................................................................2211.0010100000000
.............TTGC-----------TATGCGGCG---G---------TTCTGC..................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................G---------TTCTGCGGCCGATCAGCTG.....................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................GACTGGAGTTGGTTTGG-----TGC.......................................................................................................................................................................................................................2011.0010100000000
............TTTGC-----------TATGCGGCG---G---------TTCT....................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................CGATT-G---GTTTGCCCTGGCT---------------------T..........................................................................................................................................................................2011.0010100000000
.................................GGCG---G---------TTCTGCGGCCGATCAGCTG.....................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......CT---TTTGC-----------TATGCGGCG---G---------TTCTGCGGCC..............................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..........................................................................................................................................................................................G-----TGCCGATT-G---GTTTGCCCTGG..................................................................................................................................................................................................2111.0010000001000
....CTACT---TTTGC-----------TATGCGGCG---G---------TT......................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................................................................TGGTATGTTTGGC------------------------------------------------------------TAGGAGGT......................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
TCTCCTACT---TTTGC-----------TATGCGGCG---G---------TTCTGCGGCCGATCAGCTGGTATGTTTGGC------------------------------------------------------------TAGGAGGGGAGC------------------GACTGGAGTTGGTTTGG-----TGCCGATT-G---GTTTGCCCTGGCT---------------------TGTGGCGCCACAAACAGCTGTGAATGCGCACTTGTTGCCGCATTCTATTGGCCAAGA------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......CT---TTTGC-----------TATGCGGCG---G---------TTCTGCGGC...............................................................................................................................................................................................................................................................................................................................................................2611.001010000
....................................G---G---------TTCTGCGGCCGATCAGCTGG....................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................G---G---------TTCTGCGGCCGATCAGCTGA....................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............GC-----------TATGCGGCG---G---------TTCTGC..................................................................................................................................................................................................................................................................................................................................................................1811.001010000
......................................................................................................................................................................................TTTGG-----TGCCGATT-G---GTTTGCC......................................................................................................................................................................................................2111.001010000
.............................ATGCGGCG---G---------TTCTGCGGCC..............................................................................................................................................................................................................................................................................................................................................................1911.001100000
droWil2
TC-----TT---GTTTTTCTTGGCCTATGTTGCGGCGCCAGTTTTGCGGCTGACGCAGATGATCAGCTGGTAAGTTTGGTAAAGGTGTGAGTAACTGTGTATGCGTGTGTGTATGTGTGT-TTTGTTGTTTTGCAG----ATGG-----AAT------------------GGTGAG-------------AACGGGAAATT-T---GTTTGTTTTCGTTAT---GTT-TC-------------------------------GTATGAGCACTTGTTGCCA-----TGTTAGCC----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................TGACGCAGATGATCAGCT......................................................................................................................................................................................................................................................................................................................................................1811.00100010
...................................................GACGCAGATGATCAGCTG.....................................................................................................................................................................................................................................................................................................................................................1811.00100010
........................................GTTTTGCGGCTGACGCAGAT..............................................................................................................................................................................................................................................................................................................................................................2011.00101000
droVir3
TT-----GC---GTTTG-----------CATGCAGTGTAAGCGCTGGGGATGACGCA---AATCAGCTGGTGAGTGGTTGCCGGGAGATGGG------------------------------------------------TTGAGGGTGTGC------------------TGCAAGATTTTAT----------------T-G---GTTTGTTTTTGTTACCGTGTTTGGGCCACTCGCTT--ACAGCTGTACACATTTCTTACTGCGCACTTGTTGCCA-----TGTTAAC-----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................GATGGG------------------------------------------------TTGAGGGTGTGC------------------TGC.............................................................................................................................................................................................................................................2112.002000000001010000000000000000000000000000000000000000000000000000
...............................GCAGTGTAAGCGCTGGGGATG......................................................................................................................................................................................................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
.............TTTG-----------CATGCAGTGTAAGCGCTGGGG.........................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
.............................ATGCAGTGTAAGCGCTGGGGATGAC....................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................TACCGTGTTTGGGCCACTCG.............................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................TTACTGCGCACTTGTTGCCA-----TG............................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................TTACCGTGTTTGGGCCACT...............................................................................................................................................................................1911.001000000000000000000000000000010000000000000000000000000000000000
.....................................TAAGCGCTGGGGATGACGCA---AATCAGC.......................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
........C---GTTTG-----------CATGCAGTGTAAGC................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
................G-----------CATGCAGTGTAAGCGCTGGG..........................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............................ATGCAGTGTAAGCGCTGGGGAC.......................................................................................................................................................................................................................................................................................................................................................................2211.001000001000000000000000000000000000000000000000000000000000000000
................G-----------CATGCAGTGTAAGCGCTGGGG.........................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................T----------------T-G---GTTTGTTTTTGTTACCG............................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
......................................................................TGAGTGGTTGCCGGGAGATGGT------------------------------------------------..............................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.............................ATGCAGTGTAAGCGCTGGGGA........................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
..........................................GCTGGGGATGACGCA---AATCAGCT......................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
......................................................................TGAGTGGTTGCCGGGAGATGGG------------------------------------------------..............................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................GTGC------------------TGCAAGATTTTAT----------------T-G---GT...........................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000

Generated: 05/18/2015 at 06:27 AM