ID:

dan_3124

 Coordinate:

scaffold_13340:16228615-16228871 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dana_GLEANR_19798:4]; exon [dana_GLEANR_19798:5]; CDS [Dana\GF18542-cds]; CDS [Dana\GF18542-cds]; intron [Dana\GF18542-in]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TACTTCTTCTTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAAATTCGATAATTGTTATTAACATAAAACAACAACAATCTTTTGCATCTCTTCTTCTTCTTTTTCTTTACACGAACCAACAAAAAAAAATCAAAAAATATCCAAAAAAAACACCCAACAAACATCACAACCAACAAACAACAACAACCAACTTCTACAAATCCTCCACCAAATTGTTTTATTTTGCCATTCCGTTCTTTATCTCCGTCTCTCCGCGCACTCCGGACGGATTACAGCGGGCAAAAGGCAACAATCACACAACCAAAACCAAAACCCAACTGGAACG
***********************************************************************************************************************************************************************************.......................................................*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 M044
female body
 V055
head
...........CTTCTACTACGCCTACTACAACGCC................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0
...................................................................................................................................................................................AAACACCCAACAAACATCACAACC.......................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................CAACCAACTTCTACAAATC........................................................................................................................... 19 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................................................CTACAAATCCTCCACCAAATT............................................................................................................... 21 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................................................................................................................AAAAGGCAACAATCACACAACC....................... 22 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................AACAAAAACACCCAACAAACAACA............................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0
..............CTACTACGCCTACTACAACGC.................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................AAAAAAACACCCAATAAACA.................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................................................................................................................................ACAACTAAAACCAAAACCCA......... 20 1 1 1.00 1 1 0 0 0
...............................................................................................................................................................AATCAAAAAATATCCAAAAAAACCACC........................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................TCTACAAATCCTCCACCAAATT............................................................................................................... 22 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................AAAATATCGAACAAAGACACCCAA........................................................................................................................................................................ 24 3 2 0.50 1 1 0 0 0
...........................................................................................................................................................................................AACAAACAACACAACCAACA...................................................................................................................................................... 20 1 2 0.50 1 1 0 0 0
...............................................................................................................................................................................AAAAGAACACCCAATAAACA.................................................................................................................................................................. 20 2 2 0.50 1 1 0 0 0
...............................................................................................TAAAACAACAAGACTCTTTTGT................................................................................................................................................................................................................................................ 22 3 2 0.50 1 0 1 0 0
........................................................................................................................................................................ATCTCCAAAAAAACCACGCAACA...................................................................................................................................................................... 23 3 2 0.50 1 0 1 0 0
......................................................................................................................................................................AAATATCCCAGAAAAACACCC.......................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0
.........................................................................................................................................................................................................................................................................................................TGGATTACAGAGGGCTAAAGGC...................................... 22 3 2 0.50 1 0 0 1 0
...................................................................................................................................................................................................TCACAACCAACACACAGCAACCA........................................................................................................................................... 23 3 3 0.33 1 0 1 0 0
...............................................................................................................................................................................AAAAAAACACCCACCAAACA.................................................................................................................................................................. 20 1 3 0.33 1 1 0 0 0
..........................................................................................................CAACCTTTAGCATCTCTTC........................................................................................................................................................................................................................................ 19 2 3 0.33 1 0 1 0 0
................................................................................................................................................................................AAAAAACACCCCACAAAC................................................................................................................................................................... 18 1 4 0.25 1 1 0 0 0
.......................................................................................................................................................................................................AACCAACAAACAACAACAC........................................................................................................................................... 19 1 4 0.25 1 1 0 0 0
........................................................................................................................................................................................................................................................................................................................AAAACGCAACAATGACACCACC....................... 22 3 4 0.25 1 1 0 0 0
..............................................................................................................................................................................................AAACACCACACCCAACAAACA.................................................................................................................................................. 21 2 5 0.20 1 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................AACAATCACTCAACCCAAAGC................. 21 3 5 0.20 1 0 0 0 1
.....................................................................................................................................................................AAAGTAGCCAAAAAAAACACC........................................................................................................................................................................... 21 2 5 0.20 1 1 0 0 0
...............................................................................................................................................................................AAAAAAACAGCCAACAAAC................................................................................................................................................................... 19 1 6 0.17 1 1 0 0 0
.................................................................................................................................................................................AAAAACACCCACCAAACAACACAC............................................................................................................................................................ 24 3 6 0.17 1 1 0 0 0
.......................................................................................................................................................................................................AACCAAAAAACAACAACCACC......................................................................................................................................... 21 2 7 0.14 1 1 0 0 0
..........................................................................................................................................................................ATCCAAAAAAAACACCAA......................................................................................................................................................................... 18 1 7 0.14 1 1 0 0 0
.............................................................................................................................................................................................................................................................................................................................GCAACAAACACACAACCAAAAA.................. 22 2 7 0.14 1 1 0 0 0
.........................................................................................................................................................AAAAAAAATCAAAGAATACCC....................................................................................................................................................................................... 21 2 8 0.13 1 1 0 0 0
..............................................................................................................................................................................AAAAAAAACACCCAACACA.................................................................................................................................................................... 19 1 8 0.13 1 1 0 0 0
.......................................................................................................................................................................................................................................................................................................................................CACAACCAACACCAAAAACC.......... 20 2 9 0.11 1 1 0 0 0
............................................................................................................................................................................................................................................................................................................ATTACAGAGGGCTAAAGGCT..................................... 20 3 9 0.11 1 0 0 1 0
...............................................................................................................................................................................................AACATCACAACCGCCAAACACCA............................................................................................................................................... 23 3 9 0.11 1 1 0 0 0
..............................................................................................................................................................................AAAAAACACACCCAACAA..................................................................................................................................................................... 18 1 9 0.11 1 1 0 0 0
............................................................................................................................................................................................ACATACAACAAAACCAACAAACAACA............................................................................................................................................... 26 3 9 0.11 1 1 0 0 0
..............................................................................................................................................................................AAAAAAAACACCCAACCA..................................................................................................................................................................... 18 1 20 0.10 2 2 0 0 0
..................................................................................................................................................................................AAAACACCCAAACAACTTCACA............................................................................................................................................................. 22 3 10 0.10 1 1 0 0 0
..............................................................................................................................................................................AAAAAAAACACCCAACAAAA................................................................................................................................................................... 20 1 10 0.10 1 1 0 0 0
..............................................................................................................................................................................AAAAAAAACACCCAAGAAA.................................................................................................................................................................... 19 1 11 0.09 1 1 0 0 0
......................................................................................................................................................................AAATAGCCAAAAAAAACACCA.......................................................................................................................................................................... 21 2 11 0.09 1 0 1 0 0
........................................................................................ATTAACACAAAACAACACC.......................................................................................................................................................................................................................................................... 19 2 11 0.09 1 1 0 0 0
..............................................................................................................................................................................AAAAAAAACACCCAAAAAAC................................................................................................................................................................... 20 1 12 0.08 1 1 0 0 0
..........................................................................................................................................................................................................CAACAAACCACAACAACCAAA...................................................................................................................................... 21 2 12 0.08 1 1 0 0 0
...................................................................................................................................................................AAAAAACAACCAAAAAAAACACC........................................................................................................................................................................... 23 2 12 0.08 1 1 0 0 0
............................................................................................................................................................................CCAAAAAAAACGCCAAACAAA.................................................................................................................................................................... 21 2 12 0.08 1 1 0 0 0
..............................................................................................................................................................................AAAAAAAACACCCAACAC..................................................................................................................................................................... 18 1 14 0.07 1 1 0 0 0
..................................................................................................................................................................................AAAACACCCAAAGAGCATCAC.............................................................................................................................................................. 21 3 15 0.07 1 1 0 0 0
......................................................................................................................................................................AAAGAGCCAAAAAAAACACC........................................................................................................................................................................... 20 2 15 0.07 1 1 0 0 0
............................................................................................................................................................................CTAAAAAAAACACCCCACA...................................................................................................................................................................... 19 2 15 0.07 1 1 0 0 0
..........................................................................................................................................................................ATCAAAAAAAAACACCCACC....................................................................................................................................................................... 20 2 18 0.06 1 1 0 0 0
................................................................................................................................................................................AAAGAACACCCAACCAACACC................................................................................................................................................................ 21 3 18 0.06 1 1 0 0 0
...........................................................................................................................................................AAAAACTCAAAAAATATCCC...................................................................................................................................................................................... 20 2 19 0.05 1 1 0 0 0
..........................................................................................................................................................................................................AAACAAACAACAACAACCA........................................................................................................................................ 19 1 20 0.05 1 1 0 0 0
.......................................................................................................................................................................................................................................................................................................................................AACAACCAAAACCAAAACCCCC........ 22 3 20 0.05 1 1 0 0 0
.............................................................................................................................................................................CAAATAAAACACCCAACAC..................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0
...........................................................................................................................................................................................................................................................................................................................................ACAAAAACCACAACCCAAC....... 19 2 20 0.05 1 1 0 0 0
.............................................................................................................................................................................CAAAAAACACACCCAACCA..................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0
..............................................................................................................................................................................AAAAGAAACACCCAACAAAA................................................................................................................................................................... 20 2 20 0.05 1 1 0 0 0
..........................................................................................................................................................................AACCAAACAAAACACCCAACCA..................................................................................................................................................................... 22 3 20 0.05 1 1 0 0 0
...........................................................................................................................................................................................................................................................................................................GATTACAACGGGCAACAGA....................................... 19 3 20 0.05 1 0 0 0 1
................................................................................................................................................................................AAAAAACTCCTAACAAACA.................................................................................................................................................................. 19 2 20 0.05 1 1 0 0 0
.................................................................................................................................................................................AAAAACACCAAACAAACACCTC.............................................................................................................................................................. 22 3 20 0.05 1 1 0 0 0
..............................................................................................................................................................................................................................ATTCCACAAATCCGCCACCA................................................................................................................... 20 3 20 0.05 1 1 0 0 0
.................................................................................................................................................................................................CAGCACGACCAACAAACAGC................................................................................................................................................ 20 3 20 0.05 1 0 1 0 0
................................................................................................................................................................................AAAACACACCCAACAAACAA................................................................................................................................................................. 20 2 20 0.05 1 1 0 0 0
.................................................................................................................................................................................AAAAACAACCAACACACACCAC.............................................................................................................................................................. 22 3 20 0.05 1 1 0 0 0
.............................................................................................CATAACACACCAACCATCT..................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0
...................................................................................................................................................................AAAAAAGATCCAAAAAAACC.............................................................................................................................................................................. 20 2 20 0.05 1 1 0 0 0
.....................................................................................................................................................................AAACAATACAAAAAAAACACCCAA........................................................................................................................................................................ 24 3 20 0.05 1 1 0 0 0
...............................................................................................................................................CGAACCAACAGAAAGAAA.................................................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0
..............................................................................................................................................................................AAAACAAACACCCAACAAAAA.................................................................................................................................................................. 21 2 20 0.05 1 1 0 0 0
...............................................................................................................................................................................AAAAAAACACCCAACCCAC................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0
...............................................................................................................................................................................AAAAAAACAGCCAACAAA.................................................................................................................................................................... 18 1 20 0.05 1 1 0 0 0

Anti-sense strand reads

ATGAAGAAGAAGAAGATGATGCGGATGATGTTGCGGTGAACACCGGTTGTCATTTAATAACATTTGTACTGCTTTAAGCTATTAACAATAATTGTATTTTGTTGTTGTTAGAAAACGTAGAGAAGAAGAAGAAAAAGAAATGTGCTTGGTTGTTTTTTTTTAGTTTTTTATAGGTTTTTTTTGTGGGTTGTTTGTAGTGTTGGTTGTTTGTTGTTGTTGGTTGAAGATGTTTAGGAGGTGGTTTAACAAAATAAAACGGTAAGGCAAGAAATAGAGGCAGAGAGGCGCGTGAGGCCTGCCTAATGTCGCCCGTTTTCCGTTGTTAGTGTGTTGGTTTTGGTTTTGGGTTGACCTTGC
***************************************************************************************************************************.......................................................*********************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V106
head
 V039
embryo
 M058
embryo
 V055
head
..............................................................................................................................................................................................................................................................................ATAGAGGCAGAGAGGCGCGTG.................................................................. 21 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................GAGAAGAAGAAGAAAAAGATTT........................................................................................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................GTTCATGTCGGTTGAAGATGT............................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0
.....................................................................................................................TGGAGAAGAAGAAGAAAAA............................................................................................................................................................................................................................. 19 1 5 0.20 1 1 0 0 0 0
.......................................................................................................................GAGAAGAAGAGGAAAAAG............................................................................................................................................................................................................................ 18 1 5 0.20 1 0 0 0 0 1
...............................................................................................................AAAACGTAGAAAAGAAGA.................................................................................................................................................................................................................................... 18 1 6 0.17 1 0 0 0 1 0
...................................................................................................................................AAAAAGAAATGCGCGTGG................................................................................................................................................................................................................ 18 2 7 0.14 1 1 0 0 0 0
...................................................................................................................................AAAGAGAAGTGTGCTAGGTT.............................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 1
.......................................ACCACGGTTGTCATTTACTA.......................................................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 1 0
....................................................................................................................................................................................TTATGGGTTGTTGGTAGT............................................................................................................................................................... 18 2 14 0.07 1 0 0 1 0 0
..................................................................................................................................................................................................................................ATGTTTGGGAGGTGGTATAC............................................................................................................... 20 3 14 0.07 1 1 0 0 0 0
......................................................................................................................................................................................GTTGGTTGTTTGTCGTGTCGGT......................................................................................................................................................... 22 3 16 0.06 1 0 0 0 0 1
.......................................................................................................................GGGAAGGAGAAGAAAAAGAA.......................................................................................................................................................................................................................... 20 2 17 0.06 1 0 0 0 1 0
......................................ACCACAGGTTGTCATTTA............................................................................................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 1 0
..........................................................................................................................AAGAAGAAGAAAAAGGAAAG....................................................................................................................................................................................................................... 20 2 20 0.05 1 0 0 0 1 0
................................................................................................................................................................................................................................................................................................................................TGGTAGGGTGTTGGTTTT................... 18 2 20 0.05 1 0 0 1 0 0
...................................................................................................................................CAAAACAAATGTGGTTGGTT.............................................................................................................................................................................................................. 20 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:16228565-16228921 + dan_3124 TACTTCTTCTTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--ACAC----------------G-A---ACC-AACAAA-AAA--------------AA--ATCA--------------------------AAAAATAT------------------------------CCAA--AAAAAACACC--CAACA------AAC-------------------ATCA-----------------------C---------AACCA----------------------------------------AC--AAACAACAACAA---------------------------------------CCAA--CTTCTACAAA----TCCTCC-----------------------------A-CCAAATTGTTTTATTTTGCCATT------CCGTTCTTTATC--------------TCCGTCTC-TCCGCGC----------------------------------------------------------------------ACTC-----------------C-----------------GGACGGATT----------------------ACAGC------GGGCAAA-------A-------GGCAACAA--TCA-CA-CAACCAAAACCAAAACC---CAACTGGAACG
droBip1 scf7180000396708:3814031-3814408 - TACTTCTTCTTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--ACA-----------------C-G-------AACCAT-AAAAAA-----------AA--ATAATGATAATATTATTAATAATATTATTAAAA-----------------------------------------C-------------------------------------AACAACAACCG-----------------------A---------CACCC----------AC---------------------------AAC---AACATCAACCA-------------------------A-------------CCAA--CTTCTACAAA----TCCTCC-----------------------------A-TC-AATTGTTTTATTTTGCCATT------CCGTTCTTTATC--------------TCGAA------C-----C--------------------------------------------CGCATTCCCTATAACTCCC--GGCATG--------------------GATT--------------ACGGATT-----------------A---AACAGCGGGAACGGGCAAA-------A-------GGCAACTACA---------ATCAC----AAAACC---CAACTGGAACG
droKik1 scf7180000302639:1061397-1061746 - TACTAC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACAAA-ATTCGATAATT---TATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTT--TCTTTTTC------TT-----------------T--GCAT----------------C-GAAAATC-AACCAAAAACACG-----------AA-TATTC-----------CAACCA-----ATTCCAC-----------------------------------------C-----------------------------------------A--ACCACCACCA-ACAA------CTACAAC---------C--------------------------------------------------ACAACAACAA-------------------------C--------------------------AA---------CT-----------------------------A-CC-AATTGCTTTATTTTGCCATT------CCGTTTCTTGTC--------------TCCGTCTCGTCCCGTTTC-----------------------------------------------------------------CGCATT------------------CAATTT--------------ACGGATTTAATGC---------AGC---AGCGGCGGCAACGGGCAGG-------A-------AGCAGCAACA---------ACAAC----AACACC---CAACTGGAGTG
droFic1 scf7180000452523:995894-996235 + TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-A---ATC-AACCAA-AACACG-----------AA-AATTC--------------------------CACAACAA---------------------------------------------CACC-----------------------------ATCACCA-----------------------C---------CTCCA----------------------------------------A------CAACAACGA-------------------------CAA-----------------------CAAC----TCCTCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTCTTTGTC--------------TCCGTCTCGTC-CTGAAT-----------------------------------------------------------------TGCACT------------------CAAACT--------------CTGGACTTAACGCAA------CACC---AGCAGCGGCCAAGGGCAAG-------A-------GGCAG---------------CCAC----AACAGT---CAACTGGAGCG
droEle1 scf7180000491080:1397310-1397681 + TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--ACAT----------------C-G---ATC-AACCGA-AACACG-----------AA--ATTC--------------------------CACAACAC-------------------------CACAACCACAA----AACAAC--CAACA------ACC---AAATCAAAT--C-A----------------------------------------ACCA----------------------------------------AC--CAACAACAACGACC-----------------------AA-------------------------AAC-------TCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTCTTTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCATT------------------CAAATC--------------ACGGATTAAACGCAACAACAACAGC---AGCAGCGGCCAAGGGCAAA-------C-------GACAA---------------CCAC----AACACC---CAACTGGAGCG
droRho1 scf7180000758667:25342-25673 + TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CACAACAA---------------------------------------------C-------------------------------------------------------------------------ACCA----------------------------------------AC---AACAACAACGA-------------------------CAA------------------------AAC----TCCTCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTCTTTGTC--------------TCCGTTTCGTCCCTGTCC-----------------------------------------------------------------CGCATT------------------CAAACC--------------ATGGATATAACGCGA------CAGC---AGCAGCGGCCAAGGGCAGG-------A-------GGCCA---------------CCAC----AACACC---CAACTGGAGCG
droBia1 scf7180000302136:1223744-1224102 + TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CACAATAC---------------------------------------------CACC-----------------------------ACCACCA-----------------------C---------CTCCA----------------------------------------AC---AACAACTACGA-------------------------CAA-------------------------AC----TCCACC-----------------------------A-CC-AATTGTTTTAT-TTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCATT------------------CAAATC--------------ACGGATTTATTGCAA------CACCAGCAGCAGCGGCCAAGGGCAAG-------A-------GGCAAGCA--CCA-CAACAGCAGCAA-CAACACC---CAACTGGAGCG
droTak1 scf7180000415170:103784-104149 - TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-G---ATCGAACCAAAAACACG-----------AA--ATTC--------------------------CAC-----------------------------------------CAAC-----------------------------------------ACCA---CCT-ACAA-----CCTACAAC----T-TGA--------------------------------------------------AACAACAACGA-------------------------AAC------------------------TAC----TCCTCC-----------------------------A-CC-AATTGTTTTAT-TTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCATTC-----------------CGCATC--------------ATGGATTTAACGCTA------CACC---AACAGCGGCCAAGGGCAAG-------A-------GGCAACAACATCAACAACAACCACAA-CAACACC---CAACTGGAGCG
droEug1 scf7180000409797:1914416-1914757 - TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCT-TTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CACAACAC---------------------------------------------CACC-----------------------------ACCACCA-----------------------C---------CAC-------------------------------------------------CAACAACGA-------------------------TAA------------------------AAC----TCCTCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCATT------------------CAAATC--------------ATGGATTTAACTCAA------CATC---AGCAGCGGCCAAGGGCAAG-------A-------GGCAACCACA---------ACCAC----AGCACC---CAATTGGAGCG
dm3 chr3R:11624143-11624486 + TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CAC-----------------------------------------CAAC---ACCATCAACA------AAC-------------------ACCA-----------------------C---------CACCA----------------------------------------AC---AACAACAACGA-------------------------AAA-------------------------AC-------CCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCCGTTC-----------------------------------------------------------------CGCATC------------------CAAATC--------------ACGGACTTGACGCAA------CATC---AGCAGCGGCCAGGGGCAAG-------C-------GGCAA---------------CCAC----AACACC---CAACTGGAGCG
droSim2 3r:9621866-9622215 - dsi_2821 TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTTTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CAC-----------------------------------------CAAC---ACCATCAACA------AAC---A--C-----CACCACAAC-----------------------------------CACCA----------------------------------------AC---AACAACAACGA-------------------------AAA-------------------------AC-------CCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCATC------------------CAAATC--------------ACGGACTTGACGCAA------CACC---AGCAGCGGCCAGGGGCAAG-------C-------GGCAA---------------CCAC----AACACC---CAACTGGAGCG
droSec2 scaffold_0:10329802-10330157 - TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CAC-----------------------------------------CAAC---ACCATCAACA------AAC---A--C-----CACCACCACCA-----------------------C---------CACCA----------AC---------------------------AAC---AACAACAACGA-------------------------AAA-------------------------AC-------CCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCCGTTC-----------------------------------------------------------------CGCATC------------------CAAATC--------------ACGGACTTGACGCAA------CACC---AGCAGCGGCCAGGGGCAAG-------C-------GGCAA---------------CCAC----AACACC---CAACTGGAGCG
droYak3 3R:14813229-14813568 - TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--AATC--------------------------CACAACAC---------------------------------------------CATC-----------------------------AACACCA-----------------------C---------CACCA----------------------------------------AC---AACAACAACGA-------------------------AAA------------------------AAC-------TCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCAAA------------------CAATTC--------------ACGGATCTATCGCTA------CACC---AGCAGCGGCCAAGGGCAAG-------C-------GGCAA---------------CCAC----AACACC---CAATTGGAGCG
droEre2 scaffold_4770:11146375-11146708 + TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAT-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCT---TCTTTTTC------TT-----------------T--ACAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CACAACAC---------------------------------------------CATC-----------------------------AACACCA-----------------------C---------CACCA----------------------------------------------ACAACAACGA-------------------------AAA------------------------AAC-------TCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCATC------------------CAATTC--------------ACGGATCTAACGCTA------CATC---AGCAGCAGCCAAGGGCAAG-------C-------GGCAA---------------CCAC----AACACC---CAACTGGAGCG
dp5 2:22310473-22310872 + AACTTC---TACTTCTTCTACGCCTTCTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACAAACATTCGATATTTG-TTATTAACATACAACAACAACAATCTTTTGCATCT-CTTCT---TCTGTTTC------TT-----------------T--CCAT----------------C-C---A---------------------------------------------------------------------------------------------------------------------------------------AACC-AA-A------AT----CGATATCAACATAAAAAACA--AAACTG--A----ACCAAAAACAAAAAACAAACAAAAAAAAAAAACAAAAAAAAACTGAAC------CGA-------------------------AC-CGAACCGAAAACCGATACCGATACCGATCCTTCCTCCAATCACCAATCACCAATCAATACAACATCATCA-AATTGTT-TATTATGCCCTT------C-GTT---TCTC--------------TCCGCA----CCCTAT-------------------------------------------------------------------------------------------------------------G--GGGAT--------G------CAGC---AGCTGC------GAGCAGG-------A-------AGCAGCAGCA---------GGCGC----ATCAGCCACCAACTGGAGTG
droPer2 scaffold_3:5090664-5091048 + dpe_1389 AACTTC---TACTTCTTCTACGCCTTCTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACAAACATTCGATATTTG-TTATTAACATACAACAACAACAATCTTTTGCATCT-CTTCT---TCTGTTTC------TT-----------------T--CCAT----------------C-C---A---------------------------------------------------------------------------------------------------------------------------------------AACC-AA-A------AT----CGATATCAACATAAAAAACA--AAACTG--A----ACCAAAAACAAAAAACAA---------AAAAACAAAAAAAAACTGAAC------CGA-------------------------AC-CGAACCGAAAACCGA------TACCGATCCTTCCTCCAATCACCAATCACCAATCAATACAACATCATCA-AATTGTT-TATTATGCCCTT------C-GTT---TCTC--------------TCCGCA----CCCTAT-------------------------------------------------------------------------------------------------------------G--GGGAT--------G------CAGC---AGCTGC------GAGCAGG-------A-------AGCAGCAGCA---------GGCGC----ATCAGCCACCAACTGGAGTG
droWil2 scf2_1100000004943:8721272-8721644 + TACTACTTCTTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGAC-AA-ATTCGATAATTG-TTATTAACATAAAACAACAACAAT--TTTGCATCT-T--CTT-TTCTTTTTC------GT-----------------T--GCATTTCGTTT-CGTTTCA-C----------------GACACGCCAACAACTCTAAACAATC-----------CAACC---------------------------------------------------------------TATC-------------------------CACCT--ACCA-----------------------C---------CTCCT----------------------------------------A-----------CCGACAAAAATTTTGCTTTTGTTTTGCGAAAA------------------------A-----------------------------------------------ATTCTTTGATTTT--CGTT------TCGTT--TTGCC--------------TACGTTTCGATTC-GTTT--------------------------------------CGTTT----------------------CGTCTTCTCCTACTTCTTACCAAACAAATCAAACAACCGCATG-GTGG------------------------GGCTGCAGCTCTTGGCAAG-------A-------AGCAG---------------CGGC----ATCACC---CTAAT-----G
droVir3 scaffold_13047:2005056-2005452 - dvi_15225 TACTTC---TTCTTCTTCTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGAC-AA-ATTCGATAATTGATTATTAACATAAAACAACAACAAT---TTGCATCTTCTTCTTTTTCTT--TC------TT----T-TCTTTTTTCTTTACGCATTTCTTTTATGTTACA-CGG--------------------------------A--ACAT--------------------------CGTT------------ACACACACGCGTACAACCACAACCACAA--------------ACACACACACAC-----AC-----C---AACAC-A---CCTGCCAACACAAACAAC-----ACTGTGC----AATAACAACGTACAACA-----------------------------------AACG---------------------------------------------------------------AAC-----------------------------A-AC-ATTTGTTTTATTTTGCAATT--------------TGTT--------------TTCGTTTCCTCTCTCTTCAA-------------------ATGTCTTT---------TGTGCCTGCATTTCC--TGATTTTTGT---------------------------------------------TGG-----ACG------------C---CGCAGT------GAGCAAAAGGCA-GCGCCAGTTGGC-----------------------------------------CACG
droMoj3 scaffold_6540:22885531-22885968 + TACTTC---TTCTTCTTCTACGCCTACCACAACGCCGCTTGTGGTCAACAGTAAATTATTGTAAACATGAC-AA-ATTCGATAATTGATTATTAACATAAAACAACAACAAT---TTGCATCT-TCTTTTTTTCTT-TTCTTTTTTTTTCTTTTTTTTTTTTCTTTACGCATTTCTTTTATGTTACA-CGG--------------------------------A--ACAT--------------------------CGCAACACTCGCACACACACACATGCGCACAATTGC--CCACG--------------------CACACACATC-CATC-AT-C------AT----CATCATCAACATGAACAACA--AC--TGTGC----AATAACAACGAACAACAA-CAA-------------------AC---AACAAAAACG---------------------------------------------------------------AAC-----------------------------A-AT-ATTTGTTTTATTTTGCAATT--------------TGTT--------------TTCGTTTT-TCTCTCTTCAA-------------------C-----ATTTACATATGAATG---------CC--TGATCTTTGT---------------------------------------------TGG----------A------CG-C---TGCAGTGG------GCAAAAAGGA-GCGTCAAT---CA---------------GCCAC----GA-ATC---AAGTCGGAGCG
droGri2 scaffold_14906:8855488-8855895 - TACTTCTACTTCTTCTACTACGCCTACTACAACGCCCCTCGGGGCCAACAGTAAATTATTGTAAACATGAT-AA-ATTCGATAATTGATTATTAACATAAAACAACAACAAT---TTGCATCTTCTTTTTTTTCTT-TTCTTT---TT----T-CCTTTTTTTTTTACGCATTTCTTTTATGTTACAAC-G---CAC------------------------------------------------------------ACAAC---------------------------AACAACAACAA---C----CAATCAACA------AAC---AAAC-------T-AACAA------------------------------------------------------------------ACAAACTAA-----AC---AAAACAAACGA-------------------------AAC------------------------G---------AAC-----------------------------A-AC-ATTTGTTTTATTTT-----TTGTTATCCGTTT-TTCTTCCAAACTTCTGCTGTGCGTTT---------GC--CGCACACTCCTCCCTCTCTCTGTCTCTCTATATATATATGTCTGTATGTCCT-TAATTTCT----------------------------------------------GTGGA----ACGGAAC-----GACG---AGCAGTG------AGCAAAAGGCAGTC-------GGCGA---------------C---------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TACTTCTTCTTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--ACAC----------------G-A---ACC-AACAAA-AAA--------------AA--ATCA--------------------------AAAAATAT------------------------------CCAA--AAAAAACACC--CAACA------AAC-------------------ATCA-----------------------C---------AACCA----------------------------------------AC--AAACAACAACAA---------------------------------------CCAA--CTTCTACAAA----TCCTCC-----------------------------A-CCAAATTGTTTTATTTTGCCATT------CCGTTCTTTATC--------------TCCGTCTC-TCCGCGC----------------------------------------------------------------------ACTC-----------------C-----------------GGACGGATT----------------------ACAGC------GGGCAAA-------A-------GGCAACAA--TCA-CA-CAACCAAAACCAAAACC---CAACTGGAACGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........CTTCTACTACGCCTACTACAACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...............................................................................................................................................................................................................................................................................................................AAACACC--CAACA------AAC-------------------ATCA-----------------------C---------AACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---------------------------------------CCAA--CTTCTACAAA----TC.......................................................................................................................................................................................................................................................................................................................................1911.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAA----TCCTCC-----------------------------A-CCAAATT.............................................................................................................................................................................................................................................................................................2111.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------A-------GGCAACAA--TCA-CA-CAACC..........................2211.001010000
..............CTACTACGCCTACTACAACGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACAAA----TCCTCC-----------------------------A-CCAAATT.............................................................................................................................................................................................................................................................................................2211.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................AACCA----------------------------------------AC--AAACAACAACAC---------------------------------------.............................................................................................................................................................................................................................................................................................................................................................1940.251010000
........................................................................................................................................................................................................................................................................................................AA--AAAAAACACC--CAACA------AAA-------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20100.101010000
........................................................................................................................................................................................................................................................................................................AA--AAAAAACACC--CAACA------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18140.071010000
droBip1
TACTTCTTCTTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--ACA-----------------C-G-------AACCAT-AAAAAA-----------AA--ATAATGATAATATTATTAATAATATTATTAAAA-----------------------------------------C-------------------------------------AACAACAACCG-----------------------A---------CACCC----------AC---------------------------AAC---AACATCAACCA-------------------------A-------------CCAA--CTTCTACAAA----TCCTCC-----------------------------A-TC-AATTGTTTTATTTTGCCATT------CCGTTCTTTATC--------------TCGAA------C-----C--------------------------------------------CGCATTCCCTATAACTCCC--GGCATG--------------------GATT--------------ACGGATT-----------------A---AACAGCGGGAACGGGCAAA-------A-------GGCAACTACA---------ATCAC----AAAACC---CAACTGGAACGSizeHit CountTotal NormTotal
No Reads
droKik1
TACTAC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACAAA-ATTCGATAATT---TATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTT--TCTTTTTC------TT-----------------T--GCAT----------------C-GAAAATC-AACCAAAAACACG-----------AA-TATTC-----------CAACCA-----ATTCCAC-----------------------------------------C-----------------------------------------A--ACCACCACCA-ACAA------CTACAAC---------C--------------------------------------------------ACAACAACAA-------------------------C--------------------------AA---------CT-----------------------------A-CC-AATTGCTTTATTTTGCCATT------CCGTTTCTTGTC--------------TCCGTCTCGTCCCGTTTC-----------------------------------------------------------------CGCATT------------------CAATTT--------------ACGGATTTAATGC---------AGC---AGCGGCGGCAACGGGCAGG-------A-------AGCAGCAACA---------ACAAC----AACACC---CAACTGGAGTGSizeHit CountTotal NormTotal
No Reads
droFic1
TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-A---ATC-AACCAA-AACACG-----------AA-AATTC--------------------------CACAACAA---------------------------------------------CACC-----------------------------ATCACCA-----------------------C---------CTCCA----------------------------------------A------CAACAACGA-------------------------CAA-----------------------CAAC----TCCTCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTCTTTGTC--------------TCCGTCTCGTC-CTGAAT-----------------------------------------------------------------TGCACT------------------CAAACT--------------CTGGACTTAACGCAA------CACC---AGCAGCGGCCAAGGGCAAG-------A-------GGCAG---------------CCAC----AACAGT---CAACTGGAGCGSizeHit CountTotal NormTotal
No Reads
droEle1
TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--ACAT----------------C-G---ATC-AACCGA-AACACG-----------AA--ATTC--------------------------CACAACAC-------------------------CACAACCACAA----AACAAC--CAACA------ACC---AAATCAAAT--C-A----------------------------------------ACCA----------------------------------------AC--CAACAACAACGACC-----------------------AA-------------------------AAC-------TCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTCTTTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCATT------------------CAAATC--------------ACGGATTAAACGCAACAACAACAGC---AGCAGCGGCCAAGGGCAAA-------C-------GACAA---------------CCAC----AACACC---CAACTGGAGCGSizeHit CountTotal NormTotal
No Reads
droRho1
TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CACAACAA---------------------------------------------C-------------------------------------------------------------------------ACCA----------------------------------------AC---AACAACAACGA-------------------------CAA------------------------AAC----TCCTCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTCTTTGTC--------------TCCGTTTCGTCCCTGTCC-----------------------------------------------------------------CGCATT------------------CAAACC--------------ATGGATATAACGCGA------CAGC---AGCAGCGGCCAAGGGCAGG-------A-------GGCCA---------------CCAC----AACACC---CAACTGGAGCGSizeHit CountTotal NormTotal
No Reads
droBia1
TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CACAATAC---------------------------------------------CACC-----------------------------ACCACCA-----------------------C---------CTCCA----------------------------------------AC---AACAACTACGA-------------------------CAA-------------------------AC----TCCACC-----------------------------A-CC-AATTGTTTTAT-TTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCATT------------------CAAATC--------------ACGGATTTATTGCAA------CACCAGCAGCAGCGGCCAAGGGCAAG-------A-------GGCAAGCA--CCA-CAACAGCAGCAA-CAACACC---CAACTGGAGCGSizeHit CountTotal NormTotal
No Reads
droTak1
TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-G---ATCGAACCAAAAACACG-----------AA--ATTC--------------------------CAC-----------------------------------------CAAC-----------------------------------------ACCA---CCT-ACAA-----CCTACAAC----T-TGA--------------------------------------------------AACAACAACGA-------------------------AAC------------------------TAC----TCCTCC-----------------------------A-CC-AATTGTTTTAT-TTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCATTC-----------------CGCATC--------------ATGGATTTAACGCTA------CACC---AACAGCGGCCAAGGGCAAG-------A-------GGCAACAACATCAACAACAACCACAA-CAACACC---CAACTGGAGCGSizeHit CountTotal NormTotal
No Reads
droEug1
TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCT-TTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CACAACAC---------------------------------------------CACC-----------------------------ACCACCA-----------------------C---------CAC-------------------------------------------------CAACAACGA-------------------------TAA------------------------AAC----TCCTCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCATT------------------CAAATC--------------ATGGATTTAACTCAA------CATC---AGCAGCGGCCAAGGGCAAG-------A-------GGCAACCACA---------ACCAC----AGCACC---CAATTGGAGCGSizeHit CountTotal NormTotal
No Reads
dm3
TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CAC-----------------------------------------CAAC---ACCATCAACA------AAC-------------------ACCA-----------------------C---------CACCA----------------------------------------AC---AACAACAACGA-------------------------AAA-------------------------AC-------CCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCCGTTC-----------------------------------------------------------------CGCATC------------------CAAATC--------------ACGGACTTGACGCAA------CATC---AGCAGCGGCCAGGGGCAAG-------C-------GGCAA---------------CCAC----AACACC---CAACTGGAGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATC--------------ACGGACTTGACGCAA------C........................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TCTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTTATTTTGCCATT------CCG....................................................................................................................................................................................................................................................................2113.0030000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................ACGCCTACTACAACGCCACTTGTGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTCCCCGTTC-----------------------------------------------------------------CGCATC------------------..................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCCAGGGGCAAG-------C-------GGCAA---------------C...........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------ACGGACTTGACGCAA------CATC---AGCAG.............................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATT------CCGTTC-TTGTC--------------TCCGT........................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000010000000000000000
...................................................................................................................................TTCTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------------TCCGTTTCGTCCCCGTTC-----------------------------------------------------------------C.........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------ACGGACTTGACGCAA------CATC---AG................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...................................................................................ATTG-TTATTAACATAAAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TTCTACTACGCCTACTACAACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA---------------CCAC----AACACC---CAACT......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACTTGACGCAA------CATC---AG................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCCATT------CCGTTC-TTGTC--------------.............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------TCCGTTTCGTCCCCGTTC-----------------------------------------------------------------C.........................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...................................................................................ATTG-TTATTAACATAAAACAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGCCAGGGGCAAG-------C-------GG..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACGCAA------CATC---AGCAGCGG..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----AACACC---CAACTGGAGC.1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---AGCAGCGGCCAGGGGCAA................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAC----AACACC---CAACTGGAGCG2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---AGCAGCGGCCAGGGGCAAG-------C-------GGCA............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................ACTACGCCTACTACAACGCCACTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TTGTAAACATGACGAA-ATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCCAGGGGCAAG-------C-------GGCA............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................ACGCCACTTGTGGCCAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTC-TTGTC--------------TCCGTTTCGTCC.................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATC------------------CAAATC--------------ACGGACTTGACG..................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................CTTTTGCATCT-CTTCTTCTTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCATT------CCGTTC-TTGTC--------------TCCGT........................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ACTTC---TTCTTCTACTACGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------CCGTTC-TTGTC--------------TCCGTTTCGTC..................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................GTGGCCAACAGTAAATTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................ACATAAAACAACAACAATCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TCTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---AGCAGCGGCCAGGGGCAAG-------C-------G...............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------------ACGGACTTGACGCAA------CATC---AGCAGC............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------GGCAA---------------CCAC----AACACC---CAACTGGAGC.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------CAAATC--------------ACGGACTTGACGCAA------CATC---AG................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCCAGGGGCAAG-------C-------GGC.............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTTTCGTCCCCGTTC-----------------------------------------------------------------CG........................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................TTCTTCTTTTTC------TT-----------------T--GCAT----------------C-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
...............TACTACGCCTACTACAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAG-------C-------GGCAA---------------CCAC----AACACC---CAACTG.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................TCGATAATTG-TTATTAACATAAAACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGGCAAG-------C-------GGCAA---------------CCAC----AACACC---...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATC--------------ACGGACTTGACGCAA------CA.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CTTGTGGCCAACAGTAAATTATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTC-TTGTC--------------TCCGTTC......................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................CACG-----------AA--ATTC--------------------------CAC-----------------------------------------CAAC---ACCATCAACA------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCCAGGGGCAAG-------C-------GGCAA---------------CCAC----....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCCAGGGGCAAG-------C-------GGCAA---------------CC..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGGGCAAG-------C-------GGCAA---------------C...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TCTTCTTCTTTTTC------TT-----------------T--GCAT----------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGACGCAA------CATC---AGCAGCGG..........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------CATC---AGCAGCGGCCAGGGGC..................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATC---AGCAGCGGCCAGGG....................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
droSim2
TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTTTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CAC-----------------------------------------CAAC---ACCATCAACA------AAC---A--C-----CACCACAAC-----------------------------------CACCA----------------------------------------AC---AACAACAACGA-------------------------AAA-------------------------AC-------CCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCATC------------------CAAATC--------------ACGGACTTGACGCAA------CACC---AGCAGCGGCCAGGGGCAAG-------C-------GGCAA---------------CCAC----AACACC---CAACTGGAGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATTTTGCCATT------CCGT...................................................................................................................................................................................................................................................................2011.00100000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------------ACGGACTTGACGCAA------CACC---..................................................................................2111.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTC-TTGTC--------------TCCGTTTCGTCCC................................................................................................................................................................................................................................2311.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACTTGACGCAA------CACC---AG................................................................................2111.00110000000000000000
.................CTACGCCTACTACAACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------------------------------------------------CGCATC------------------CAAATC--------------ACGGACC.......................................................................................................2111.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-----------------------------------------------------------------CGCATC------------------CAAATC--------------ACGGACT.......................................................................................................2211.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCCATT------CCGTTC-TTGTC--------------.............................................................................................................................................................................................................................................2111.00100000000001000000
............................................................GTAAACATGACGAA-ATTCGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------------ACGGACTTGACGCAA------CACC---AGCAG.............................................................................2611.00110000000000000000
.....................................................................................................................................................................T--GCAT----------------C-G---ATC-AACCAA-AACAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC--------------ACGGACTTGACGCAA------CAC......................................................................................2111.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------------------------------------------------CGCATC------------------CAAATC--------------ACGGACT.......................................................................................................2111.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCA......................................................................................................................................................2511.00110000000000000000
droSec2
TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CAC-----------------------------------------CAAC---ACCATCAACA------AAC---A--C-----CACCACCACCA-----------------------C---------CACCA----------AC---------------------------AAC---AACAACAACGA-------------------------AAA-------------------------AC-------CCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCCGTTC-----------------------------------------------------------------CGCATC------------------CAAATC--------------ACGGACTTGACGCAA------CACC---AGCAGCGGCCAGGGGCAAG-------C-------GGCAA---------------CCAC----AACACC---CAACTGGAGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTC-TTGTC--------------TCCGTTTCGT...................................................................................................................................................................................................................................2112.0020200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATT------CCGTTC-TTGTC--------------TCCGTT.......................................................................................................................................................................................................................................2111.0010001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATC------------------CAAATC--------------ACGGACTTGA....................................................................................................2111.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCCATT------CCGTTC-TTGTC--------------.............................................................................................................................................................................................................................................2111.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC----AACACC---CAACTGGAG..1811.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATT------CCGTTC-TTGTC--------------TCCGTTTC.....................................................................................................................................................................................................................................2311.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGCCAGGGGCAAG-------C-------GG..............................................2111.0010001
droYak3
TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TT-----------------T--GCAT----------------C-G---ATC-AACCAA-AACACG-----------AA--AATC--------------------------CACAACAC---------------------------------------------CATC-----------------------------AACACCA-----------------------C---------CACCA----------------------------------------AC---AACAACAACGA-------------------------AAA------------------------AAC-------TCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCAAA------------------CAATTC--------------ACGGATCTATCGCTA------CACC---AGCAGCGGCCAAGGGCAAG-------C-------GGCAA---------------CCAC----AACACC---CAATTGGAGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................CTACTACAACGCCACTTGTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTC--------------ACGGATCTATCGCTA------CACC---..................................................................................2311.00100000010000
............................................................................................................................CTTCTTCTTCTTTTTC------TT-----------------T--GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAAGGGCAAG-------C-------GGCAA---------------CCAC----AAC.................2611.00101000000000
droEre2
TACTTC---TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAT-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCT---TCTTTTTC------TT-----------------T--ACAT----------------C-G---ATC-AACCAA-AACACG-----------AA--ATTC--------------------------CACAACAC---------------------------------------------CATC-----------------------------AACACCA-----------------------C---------CACCA----------------------------------------------ACAACAACGA-------------------------AAA------------------------AAC-------TCC-----------------------------A-CC-AATTGTTTTATTTTGCCATT------CCGTTC-TTGTC--------------TCCGTTTCGTCCCTGTTC-----------------------------------------------------------------CGCATC------------------CAATTC--------------ACGGATCTAACGCTA------CATC---AGCAGCAGCCAAGGGCAAG-------C-------GGCAA---------------CCAC----AACACC---CAACTGGAGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCAAG-------C-------GGCAA---------------CCAC----AACACC---...........2411.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC------------------CAATTC--------------ACGGATCTAACGCTA------CA.......................................................................................2511.0011000000
.....................GCCTACTACAACGCCACTTGTGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
....................................................................................................................................................................................................C-AACCAA-AACACG-----------AA--ATTC--------------------------CACAACAC---------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
dp5
AACTTC---TACTTCTTCTACGCCTTCTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACAAACATTCGATATTTG-TTATTAACATACAACAACAACAATCTTTTGCATCT-CTTCT---TCTGTTTC------TT-----------------T--CCAT----------------C-C---A---------------------------------------------------------------------------------------------------------------------------------------AACC-AA-A------AT----CGATATCAACATAAAAAACA--AAACTG--A----ACCAAAAACAAAAAACAAACAAAAAAAAAAAACAAAAAAAAACTGAAC------CGA-------------------------AC-CGAACCGAAAACCGATACCGATACCGATCCTTCCTCCAATCACCAATCACCAATCAATACAACATCATCA-AATTGTT-TATTATGCCCTT------C-GTT---TCTC--------------TCCGCA----CCCTAT-------------------------------------------------------------------------------------------------------------G--GGGAT--------G------CAGC---AGCTGC------GAGCAGG-------A-------AGCAGCAGCA---------GGCGC----ATCAGCCACCAACTGGAGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................TCTTTTGCATCT-CTTCT---TCTGTTTC------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGG-------A-------AGCAGCAGCA---------GGCG.........................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------GAGCAGG-------A-------AGCAGCAGCA---------GGCGC----....................2411.0010000000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGATACCGATACCGATCCTT........................................................................................................................................................................................................................................................................................................................................2211.0010000100000
...................................................................................................................TTGCATCT-CTTCT---TCTGTTTC------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------GGCGC----ATCAGCCACCAACTGGA...2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------GGCGC----ATCAGCCACCAACTGGA...2611.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC------CGA-------------------------AC-CGAACCGAAAACCGATACC.....................................................................................................................................................................................................................................................................................................................................................2811.0010001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAC------CGA-------------------------AC-CGAACCGA................................................................................................................................................................................................................................................................................................................................................................2160.3320200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGATACCGATACCGAT............................................................................................................................................................................................................................................................................................................................................1960.1710100000000
droPer2
AACTTC---TACTTCTTCTACGCCTTCTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACAAACATTCGATATTTG-TTATTAACATACAACAACAACAATCTTTTGCATCT-CTTCT---TCTGTTTC------TT-----------------T--CCAT----------------C-C---A---------------------------------------------------------------------------------------------------------------------------------------AACC-AA-A------AT----CGATATCAACATAAAAAACA--AAACTG--A----ACCAAAAACAAAAAACAA---------AAAAACAAAAAAAAACTGAAC------CGA-------------------------AC-CGAACCGAAAACCGA------TACCGATCCTTCCTCCAATCACCAATCACCAATCAATACAACATCATCA-AATTGTT-TATTATGCCCTT------C-GTT---TCTC--------------TCCGCA----CCCTAT-------------------------------------------------------------------------------------------------------------G--GGGAT--------G------CAGC---AGCTGC------GAGCAGG-------A-------AGCAGCAGCA---------GGCGC----ATCAGCCACCAACTGGAGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-TATTATGCCCTT------C-GTT---...............................................................................................................................................................................................................................................................1912.002200000
.................CTACGCCTTCTACAACGCCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................C------CGA-------------------------AC-CGAACCGAAAAC............................................................................................................................................................................................................................................................................................................................................................1860.503300000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTGAAC------CGA-------------------------AC-CGAACCGA................................................................................................................................................................................................................................................................................................................................................................2320.501100000
droWil2
TACTACTTCTTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGAC-AA-ATTCGATAATTG-TTATTAACATAAAACAACAACAAT--TTTGCATCT-T--CTT-TTCTTTTTC------GT-----------------T--GCATTTCGTTT-CGTTTCA-C----------------GACACGCCAACAACTCTAAACAATC-----------CAACC---------------------------------------------------------------TATC-------------------------CACCT--ACCA-----------------------C---------CTCCT----------------------------------------A-----------CCGACAAAAATTTTGCTTTTGTTTTGCGAAAA------------------------A-----------------------------------------------ATTCTTTGATTTT--CGTT------TCGTT--TTGCC--------------TACGTTTCGATTC-GTTT--------------------------------------CGTTT----------------------CGTCTTCTCCTACTTCTTACCAAACAAATCAAACAACCGCATG-GTGG------------------------GGCTGCAGCTCTTGGCAAG-------A-------AGCAG---------------CGGC----ATCACC---CTAAT-----GSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCAAG-------A-------AGCAG---------------CGGC----....................1911.00110000
.......................CTACTACAACGCCACTTGTGGCCAACAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100010
...........................................................................ATTCGATAATTG-TTATTAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..................................................................................................................................................................................T-CGTTTCA-C----------------GACACGCCAACAACTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTCTTGGCAAG-------A-------AGCAG---------------C...........................2211.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACCGCATG-GTGG------------------------GGCTGCAG..........................................................................2411.00101000
droVir3
TACTTC---TTCTTCTTCTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGAC-AA-ATTCGATAATTGATTATTAACATAAAACAACAACAAT---TTGCATCTTCTTCTTTTTCTT--TC------TT----T-TCTTTTTTCTTTACGCATTTCTTTTATGTTACA-CGG--------------------------------A--ACAT--------------------------CGTT------------ACACACACGCGTACAACCACAACCACAA--------------ACACACACACAC-----AC-----C---AACAC-A---CCTGCCAACACAAACAAC-----ACTGTGC----AATAACAACGTACAACA-----------------------------------AACG---------------------------------------------------------------AAC-----------------------------A-AC-ATTTGTTTTATTTTGCAATT--------------TGTT--------------TTCGTTTCCTCTCTCTTCAA-------------------ATGTCTTT---------TGTGCCTGCATTTCC--TGATTTTTGT---------------------------------------------TGG-----ACG------------C---CGCAGT------GAGCAAAAGGCA-GCGCCAGTTGGC-----------------------------------------CACGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAAGGCA-GCGCCAGTT................................................2011.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCC--TGATTTTTGT---------------------------------------------TGG-----ACG------------C---C.................................................................................2311.001000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT--------------TTCGTTTCCTCTCTCTTCA..........................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC--TGATTTTTGT---------------------------------------------TGG-----ACG------------C---C.................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AAC-----ACTGTGC----AATAACAACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGT---------------------------------------------TGG-----ACG------------C---CGCAA.............................................................................1811.001000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................TT----T-TCTTTTTTCTTTACGCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CACACACAC-----AC-----C---AACAC-A---CC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.331000000000000001000000000000000000000000000000000000000000000000
droMoj3
TACTTC---TTCTTCTTCTACGCCTACCACAACGCCGCTTGTGGTCAACAGTAAATTATTGTAAACATGAC-AA-ATTCGATAATTGATTATTAACATAAAACAACAACAAT---TTGCATCT-TCTTTTTTTCTT-TTCTTTTTTTTTCTTTTTTTTTTTTCTTTACGCATTTCTTTTATGTTACA-CGG--------------------------------A--ACAT--------------------------CGCAACACTCGCACACACACACATGCGCACAATTGC--CCACG--------------------CACACACATC-CATC-AT-C------AT----CATCATCAACATGAACAACA--AC--TGTGC----AATAACAACGAACAACAA-CAA-------------------AC---AACAAAAACG---------------------------------------------------------------AAC-----------------------------A-AT-ATTTGTTTTATTTTGCAATT--------------TGTT--------------TTCGTTTT-TCTCTCTTCAA-------------------C-----ATTTACATATGAATG---------CC--TGATCTTTGT---------------------------------------------TGG----------A------CG-C---TGCAGTGG------GCAAAAAGGA-GCGTCAAT---CA---------------GCCAC----GA-ATC---AAGTCGGAGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAAGGA-GCGTCAAT---CA---------------GCCAC----G...................2611.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA-CAA-------------------AC---AACAAAAAC......................................................................................................................................................................................................................................................................................................................................................................................................2231.003300000
...........................................................................................................................................................................................................................................................................CACACACACACATGCGCACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
................TCTACGCCTACCACAACGCCGCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................CGAACAACAA-CAA-------------------AC---AACAAAA........................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
................TCTACGCCTACCACAACGCCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
................TCTACGCCTACCACAACGCCGCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTATTTTGCAATT--------------TGTT--------------TTCGT........................................................................................................................................................................................................................................2611.001000001
......................................................................C-AA-ATTCGATAATTGATTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................AATAACAACGAACAACAA-C.........................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000010
..............................................................................................................................................TTTTTTTCTTTTTTTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA-CAA-------------------AC---AACAAA.........................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
droGri2
TACTTCTACTTCTTCTACTACGCCTACTACAACGCCCCTCGGGGCCAACAGTAAATTATTGTAAACATGAT-AA-ATTCGATAATTGATTATTAACATAAAACAACAACAAT---TTGCATCTTCTTTTTTTTCTT-TTCTTT---TT----T-CCTTTTTTTTTTACGCATTTCTTTTATGTTACAAC-G---CAC------------------------------------------------------------ACAAC---------------------------AACAACAACAA---C----CAATCAACA------AAC---AAAC-------T-AACAA------------------------------------------------------------------ACAAACTAA-----AC---AAAACAAACGA-------------------------AAC------------------------G---------AAC-----------------------------A-AC-ATTTGTTTTATTTT-----TTGTTATCCGTTT-TTCTTCCAAACTTCTGCTGTGCGTTT---------GC--CGCACACTCCTCCCTCTCTCTGTCTCTCTATATATATATGTCTGTATGTCCT-TAATTTCT----------------------------------------------GTGGA----ACGGAAC-----GACG---AGCAGTG------AGCAAAAGGCAGTC-------GGCGA---------------C---------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:25 AM