dan_3106

CDS [Dana\GF16550-cds]; CDS [Dana\GF16550-cds]; exon [dana_GLEANR_17819:4]; exon [dana_GLEANR_17819:5]; intron [Dana\GF16550-in]

##################################################---------------------------------------------------------------------------################################################## TAAAGGAACTACTGATTATTATGAATGGGCTAAGGATAACTACCAAGACAGTAAGTTTTTTCATTAATAGAAAAATGTTTGAGGACATTTAAAACGAACAAATTCGCACATTCGCATTTTCGCAGGCATGCTTCCCTGGTTCTTCCAGACCTGCAGCGAGTTCGGCTGGTTCCAG ************************************************.............((....(((((((((.((((....(((.....)))....)))).))))).....))))..))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	V105 male body	M058 embryo	V055 head	V106 head
.............GATTATTATGAATGGGCTAAGG............................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0
.........................................................................................................................................GGATCTTCCAGACCTGCAGC..................	20	1	2	0.50	1	1	0	0	0	0
...........................................................................................................................................ATCTTCCAGACCTGCAGCGAGTTCGGTTG.......	29	2	2	0.50	1	1	0	0	0	0
.........................................................................................TAAAATGAACAAAGGCGCAC..................................................................	20	3	12	0.08	1	0	0	1	0	0
......................................................................................................................................................CTGCAGCGGGCTTGGCTGGT.....	20	3	12	0.08	1	0	0	0	1	0
.................................................................AATAGAAAAAGGTTGGAGGG..........................................................................................	20	3	20	0.05	1	0	0	0	0	1

ATTTCCTTGATGACTAATAATACTTACCCGATTCCTATTGATGGTTCTGTCATTCAAAAAAGTAATTATCTTTTTACAAACTCCTGTAAATTTTGCTTGTTTAAGCGTGTAAGCGTAAAAGCGTCCGTACGAAGGGACCAAGAAGGTCTGGACGTCGCTCAAGCCGACCAAGGTC ************************************************.............((....(((((((((.((((....(((.....)))....)))).))))).....))))..))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo	V055 head
.........................................................AAAATTAATTATCTTTTGACAAA...............................................................................................	23	2	2	0.50	1	1	0	0
.....................................TTTACGGTTCTGGCATTCAA......................................................................................................................	20	3	4	0.25	1	0	1	0
..................................................................................................................................................TCGGGATTTCGCTCAAGCC..........	19	3	13	0.08	1	0	0	1
...........................................GTTCTTTCATTCACAAAA..................................................................................................................	18	2	20	0.05	1	0	1	0
.........................................................................................................................CGTCCGTATGAAGGGGGCA...................................	19	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13340:15163969-15164143 -	dan_3106	TAAAGGAACTACTGATTATTATGAATGGGCTAAGGATAACTACCAAGAC---AGTAAGT---TTTTTC---ATT---AATAGAA------AAATGTTTG----AGGAC------------AT-TTAAAACGAACAAAT----------------T-CG--C-ACA-TT-CGCA-----------TTTTCGCAGGCATGCTTCCCTGGTTCTTCCAGACCTGCAGCGAGTTCGGCTGGTTCCAG
droBip1	scf7180000396708:4865116-4865272 +		TAAAGGAACTACTGATTATTATGAATGGTCCAAGGATAACTACCAAGAC---AGTAAGC---TCTTTG------A---ATACAA------AAGCGTTGA----ACGAC------------TT--------------------------TTAAACC---A-------AC-CATC------------GTTTTCAGGTACCCTTCCCTGGGTCTTCCAGACCTGCAGCGAGTTCGGCTGGTTCCAG
droKik1	scf7180000302707:449848-450008 +		CAAAGGAGCTGTGGGCTACTATGAATGGTCCAAGGAAAACTACGAAGAT---AGTAAGC---CTTCAC---TCT---GTTTAAATCATT---------------------------------TCTGATGC------------------TAA--CAGAT--A-ATT-TT-CTCT------------CTCCACAGGCGATCTGCCTTGGATCTTCCAGACCTGCAGCGAGTTCGGTTGGTTCCAA
droFic1	scf7180000454126:211480-211640 +		CAACGGAGCGGTGGGATACTACGAATGGTCCAAGGAGAACTACGAAGAC---AGTAAGT---GATTTTAACTTAA--A------GTTTA---------------------CT----CTTTTT--------------------------TATAACCGAC--A-TTT-TC-CTCT------------CTTTTAAGGCGACTTGCCTTGGATTTTCCAGACCTGCAACGAATTCGGATGGTTCCAA
droEle1	scf7180000490994:1011439-1011610 +		CCAAGGAGCTGTGGACTACTACGAATGGTCCAAAGAGAACTACGAAGAC---AGTAAGT---GGTTTTACCTTCT--A------AAGCA----------ATCTT----TTTTGAATAAGTGT--------------------------TATTAATGAC--A-TTT-TT-CATC------------CTTTTTAGGCGACTTGCCATGGATTTTCCAGACCTGCAGCGAGTTCGGATGGTTCCAA
droRho1	scf7180000760408:3206-3381 -		CAATGGAGCTGTAGACTACTACGAATGGTCCAAGGAGAACTACGAAGAC---AGTAAGT---GTTA---AGTTTT--A------ACATCTAAATC---ATTCTC----ATTTGAAACCATTT--------------------------TTTAAACGAC--T-TTT-TC-CACC------------CTCTTTAGGCGACTTGCCCTGGATTTTCCAGACCTGCAACGAGTTCGGATGGTTCCAA
droBia1	scf7180000302402:988059-988225 +		CAAAGGAGCTGTGGAGTACTACGAGTGGTCCAAGGAGAACTACGAAGAT---AGTATGT---ATCTCG------AAAGTTAAAA------TATT---G------------ACG---------------------AAGACGATGT----TTTAATA-TG--T-TTT-CC-CACA------------CCTTTTAGGCGACTTGCCTTGGATTTTCCAAACCTGCAGCGAGTTCGGATGGTTCCAG
droTak1	scf7180000410451:253310-253477 +		TAATGGAGCTGTGGGCTACTATGAATGGTCTAAGGAGAACTACGAAGAC---AGTGAGT---TTTAAC---TTTT--A------ATATA---------------------AAATA-------TAAAATAA---------TAATAA---TTTAATA-TA--T-CTT-TC-TACC------------CTTTTTAGGCGACTTGCCCTGGATCTTCCAGACCTGCAACGAGTTCGGTTGGTTCCAG
droEug1	scf7180000409804:1495771-1495927 +		CAAGGGAGCTGTGGACTACTACGAATGGTCCAAGGAGAACTACGAAGAT---AGTAAGT---GAATATAACTGAT--A------GCATC---------------------TTGAAACCATGC--------------------------TAAAAAC-------------GTATC------------CTCTTTAGGCGACTTGCCTTGGATTTTCCAGACCTGCAGCGAGTTTGGATGGTTCCAG
dm3	chr3R:15220281-15220444 +		TAAGGGAGCTGTTGGCTACTACGAATGGTCTAAGGAGAACTACCAGGAT---AGTAGGT---GCTACTTGCTTTT--A------GCATC---------------------ATATATCCTTGT--------------------------TAAAACC---TATCTT-T--TTGAC------------TCTTTAAGGTGACTTGCCCTGGATTTTCCAGACCTGCAGCGAGTTCGGATGGTTCCAG
droSim2	3r:6038948-6039108 -	dsi_17940	CAAGGGAGCTGTTGGCTACTACGAATGGTCGAAGGAGAACTACCAGGAT---AGTAAGT---GCTACTTGCCTTT--A------GCATC---------------------ATATATCTTTGC--------------------------TGAAACC---T---CT-T--TTGAA------------TCTTTAAGGTGACTTGCCCTGGATTTTCCAGACCTGCAGCGAGTTCGGATGGTTCCAG
droSec2	scaffold_25:548080-548243 -		CAAGGGAGCTGTTGGTTACTACGAATGGTCGAAGGAGAACTACCAGGAT---AGTAAGT---GCTACTTGCCTTC--A------GCATC---------------------ATATATCTTTGC--------------------------TGAAACC---TTTTGT-T--TTGAA------------TCTTTAAGGTGACTTGCCCTGGATTTTCCAGACCTGCAGCGAGTTCGGATGGTTCCAG
droYak3	3R:3948877-3949039 +		CAAGGGATCTGTTGGCTACTACGAATGGTCTAAGGATAACTACCAAGAT---AGTACGG---GGTTTTTATTTTA--A------GCATA---------------------ATATAACTTTGT--------------------------TATAACT-AA--G-TT-T--TTAAC------------TCTTTTAGGTGACTTGCCCTGGGTTTTCCAGACCTGCAGCGAGTTCGGATGGTTCCAG
droEre2	scaffold_4770:6414049-6414212 -		CAAGGGAGCAGTTGGCTACTACGAATGGTCCAAGGAGAACTACGAAGAT---AGTACGT---GATTTCTAGTTTC--A------GCATC---------------------GTATAACTTTGT--------------------------AATAACC---TAACTT-T--TTAAC------------TCTTTTAGGTGACTTGCCCTGGATCTTCCAGACCTGCAGCGAGTTCGGTTGGTTCCAG
dp5	2:29682524-29682689 +		TAAGGGCACCGTCAACTACTACAAATGGGCCAAGATAAACTATGAAGACGACAGTGAGT---GATATTC---TGA-------AAGGAAG---------------------------------------------AAGCCTATCCCTTTCTCATCC---CTTTCC-C---TTGT------------GTTCTCAGGCGGTCTTCCCTGGATATATCAGACTTGCAGCGAATTTGGTTGGTACCAG
droPer2	scaffold_6:5054011-5054176 +		TAAGGGCACCGTCAACTACTACAAATGGGCCAAGATAAACTATGAAGACGACAGTGAGT---GATATTC---TGA-------AAGGAAG---------------------------------------------AAGCCTATCCCTTTCTCATCC---CTTTCC-C---TTGT------------GTTCTCAGGCGGTCTTCCCTGGATATATCAGACTTGCAGCGAATTTGGTTGGTACCAG
droWil2	scf2_1100000004943:4007766-4007930 +		TCAAGGAGCCGTAGACTACTACAAATGGTCCATGGACAACTATCAAGGC---AGTGAGT---ATCTCA--------------CAAGAAC---TT---T-------AAC--AT------TTAC--------------------------AA------TT--A-ATT-AA-CTGCTTCACTTAATCAATATTCAGCTGGCATTGCATGGACTTATCAAACTTGCAACGAATTCGGTTGGTTCCAA
droVir3	scaffold_13047:16406341-16406498 -		TAAGGGAACTGTTGCCTATTACAAATGGTCAATGGACAACTACGATGGT---TGTAAGT---ATATAC---TGG---CATAACA------AATT---G-----------------ACCAAG-----------------------------TAAAG-TA--A-ATC-AT-TTCT------------TCTCTTAGCTGGTCTTGCTTGGTTCTATCAAACATGCAGAGAATTTGGCTGGTTTCAA
droMoj3	scaffold_6540:12707297-12707465 +		TCAGGAAACTGTTGATTATTACAAATGGGTCAAGAATAACTACAATGGTAATCGTAAGTAGAGCCGTATACCTCA-------AAAGACG---------------------CTGTAAATCAAA--------------------------TATGAAC-TA--T-TT---T-TTTA------------CTTCTTAGTACATCTCAGCTGGTTCTATCAAACATGCAGACAATTTGGTTGGTTCCAA
droGri2	scaffold_15116:1334065-1334230 -		TAAAGCAACTGTTAAATATTACAAGTGGGCAATGCATAACTATGATGGT---TGTAAGT---GACACCT---TGT----TAAATGAATG---------------------ATGAATACTAAG--------------------------TCTGACG-AA--T-CAA-A--TAAC----------TCTTTCTTAGCTGGTCTCAGCTGGTTCTTTCAAACATGCAACGAATTCGGCTGGTACCAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TAAAGGAACTACTGATTATTATGAATGGGCTAAGGATAACTACCAAGAC---AGTAAGT---TTTTTC---ATT---AATAGAA------AAATGTTTG----AGGAC------------AT-TTAAAACGAACAAAT----------------T-CG--C-ACA-TT-CGCA-----------TTTTCGCAGGCATGCTTCCCTGGTTCTTCCAGACCTGCAGCGAGTTCGGCTGGTTCCAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............GATTATTATGAATGGGCTAAGG................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0

droBip1

TAAAGGAACTACTGATTATTATGAATGGTCCAAGGATAACTACCAAGAC---AGTAAGC---TCTTTG------A---ATACAA------AAGCGTTGA----ACGAC------------TT--------------------------TTAAACC---A-------AC-CATC------------GTTTTCAGGTACCCTTCCCTGGGTCTTCCAGACCTGCAGCGAGTTCGGCTGGTTCCAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAAAGGAGCTGTGGGCTACTATGAATGGTCCAAGGAAAACTACGAAGAT---AGTAAGC---CTTCAC---TCT---GTTTAAATCATT---------------------------------TCTGATGC------------------TAA--CAGAT--A-ATT-TT-CTCT------------CTCCACAGGCGATCTGCCTTGGATCTTCCAGACCTGCAGCGAGTTCGGTTGGTTCCAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAACGGAGCGGTGGGATACTACGAATGGTCCAAGGAGAACTACGAAGAC---AGTAAGT---GATTTTAACTTAA--A------GTTTA---------------------CT----CTTTTT--------------------------TATAACCGAC--A-TTT-TC-CTCT------------CTTTTAAGGCGACTTGCCTTGGATTTTCCAGACCTGCAACGAATTCGGATGGTTCCAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCAAGGAGCTGTGGACTACTACGAATGGTCCAAAGAGAACTACGAAGAC---AGTAAGT---GGTTTTACCTTCT--A------AAGCA----------ATCTT----TTTTGAATAAGTGT--------------------------TATTAATGAC--A-TTT-TT-CATC------------CTTTTTAGGCGACTTGCCATGGATTTTCCAGACCTGCAGCGAGTTCGGATGGTTCCAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAATGGAGCTGTAGACTACTACGAATGGTCCAAGGAGAACTACGAAGAC---AGTAAGT---GTTA---AGTTTT--A------ACATCTAAATC---ATTCTC----ATTTGAAACCATTT--------------------------TTTAAACGAC--T-TTT-TC-CACC------------CTCTTTAGGCGACTTGCCCTGGATTTTCCAGACCTGCAACGAGTTCGGATGGTTCCAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAAAGGAGCTGTGGAGTACTACGAGTGGTCCAAGGAGAACTACGAAGAT---AGTATGT---ATCTCG------AAAGTTAAAA------TATT---G------------ACG---------------------AAGACGATGT----TTTAATA-TG--T-TTT-CC-CACA------------CCTTTTAGGCGACTTGCCTTGGATTTTCCAAACCTGCAGCGAGTTCGGATGGTTCCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAATGGAGCTGTGGGCTACTATGAATGGTCTAAGGAGAACTACGAAGAC---AGTGAGT---TTTAAC---TTTT--A------ATATA---------------------AAATA-------TAAAATAA---------TAATAA---TTTAATA-TA--T-CTT-TC-TACC------------CTTTTTAGGCGACTTGCCCTGGATCTTCCAGACCTGCAACGAGTTCGGTTGGTTCCAG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CAAGGGAGCTGTGGACTACTACGAATGGTCCAAGGAGAACTACGAAGAT---AGTAAGT---GAATATAACTGAT--A------GCATC---------------------TTGAAACCATGC--------------------------TAAAAAC-------------GTATC------------CTCTTTAGGCGACTTGCCTTGGATTTTCCAGACCTGCAGCGAGTTTGGATGGTTCCAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

TAAGGGAGCTGTTGGCTACTACGAATGGTCTAAGGAGAACTACCAGGAT---AGTAGGT---GCTACTTGCTTTT--A------GCATC---------------------ATATATCCTTGT--------------------------TAAAACC---TATCTT-T--TTGAC------------TCTTTAAGGTGACTTGCCCTGGATTTTCCAGACCTGCAGCGAGTTCGGATGGTTCCAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................TACTACGAATGGTCTAAGGAGAA............................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CTAAGGAGAACTACCAGGAT---...............................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............GCTACTACGAATGGTCTAAGGA...............................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AAGGAGAACTACCAGGAT---A..............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................CCTTGT--------------------------TAAAACC---TATCTT-T--TT.........................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TAAGGGAGCTGTTGGCTAC................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AAGGAGAACTACCAGGAT---AA.............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GTTGGCTACTACGAATG........................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CAAGGGAGCTGTTGGCTACTACGAATGGTCGAAGGAGAACTACCAGGAT---AGTAAGT---GCTACTTGCCTTT--A------GCATC---------------------ATATATCTTTGC--------------------------TGAAACC---T---CT-T--TTGAA------------TCTTTAAGGTGACTTGCCCTGGATTTTCCAGACCTGCAGCGAGTTCGGATGGTTCCAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................CGAAGGAGAACTACCAGGA...................................................................................................................................................................................................	19	1	3.00	3	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0
........CTGTTGGCTACTACGAAT.........................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGAT........	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CTACTACGAATGGTCGAAG.................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................ACCTGCAGCGAGTTCGGATG.......	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TTCCAGACCTGCAGCGAGTTCGGA.........	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGATG.......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................TCCAGACCTGCAGCGAGTTCGGA.........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGAT........	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AGGAGAACTACCAGGAT---A..............................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ATTTTCCAGACCTGCAGCGAGTT.............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....GAGCTGTTGGCTACTACGAATG........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TTCCAGACCTGCAGCGAGTTCGGATG.......	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CGAATGGTCGAAGGAGAAC...........................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ATTTTCCAGACCTGCAGCGAGTTCGGAT........	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................ATCTTTGC--------------------------TGAAACT---.....................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CAAGGGAGCTGTTGGTTACTACGAATGGTCGAAGGAGAACTACCAGGAT---AGTAAGT---GCTACTTGCCTTC--A------GCATC---------------------ATATATCTTTGC--------------------------TGAAACC---TTTTGT-T--TTGAA------------TCTTTAAGGTGACTTGCCCTGGATTTTCCAGACCTGCAGCGAGTTCGGATGGTTCCAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............GTTACTACGAATGGTCGAAGGA...............................................................................................................................................................................................................	22	1	25.00	25	0	25	0	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGATGGTT....	21	1	11.00	11	0	11	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGATGGTT....	24	1	7.00	7	1	6	0	0
.............................CGAAGGAGAACTACCAGGA...................................................................................................................................................................................................	19	1	6.00	6	1	5	0	0
..............GTTACTACGAATGGTCGAAGGAGA.............................................................................................................................................................................................................	24	1	6.00	6	0	6	0	0
CAAGGGAGCTGTTGGTTACT...............................................................................................................................................................................................................................	20	1	5.00	5	0	5	0	0
....GGAGCTGTTGGTTACTACGAATGGT......................................................................................................................................................................................................................	25	1	4.00	4	0	4	0	0
.............................CGAAGGAGAACTACCAGGAT---AGT............................................................................................................................................................................................	23	1	4.00	4	0	4	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGATGGTTC...	25	1	4.00	4	2	2	0	0
....GGAGCTGTTGGTTACTACGAATGGTC.....................................................................................................................................................................................................................	26	1	3.00	3	0	3	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGATGGT.....	23	1	3.00	3	0	3	0	0
...............TTACTACGAATGGTCGAAGGAGA.............................................................................................................................................................................................................	23	1	3.00	3	0	3	0	0
...............TTACTACGAATGGTCGAAGGA...............................................................................................................................................................................................................	21	1	3.00	3	0	2	0	1
.............................CGAAGGAGAACTACCAGGAT---...............................................................................................................................................................................................	20	1	3.00	3	0	3	0	0
...........................GTCGAAGGAGAACTACCAGGA...................................................................................................................................................................................................	21	1	3.00	3	0	3	0	0
......................GAATGGTCGAAGGAGAACTACCAGGA...................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0
.............GGTTACTACGAATGGTCGAAGGA...............................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGATGGTT....	22	1	2.00	2	0	2	0	0
........................ATGGTCGAAGGAGAACTACCAGG....................................................................................................................................................................................................	23	1	2.00	2	1	1	0	0
..............................................................................................................................................................................................................GATTTTCCAGACCTGCAGCGA................	21	1	2.00	2	0	2	0	0
CAAGGGAGCTGTTGGTTACTACGAAT.........................................................................................................................................................................................................................	26	1	2.00	2	1	1	0	0
..........GTTGGTTACTACGAATGGTCGAAGGAGA.............................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0
..............................................................................................................................................................................................................................AGCGAGTTCGGATGGTTCC..	19	1	2.00	2	1	1	0	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGATGGTTCCA.	25	1	2.00	2	0	2	0	0
......................................................................................................................................................................................................................AGACCTGCAGCGAGTTCGGATGGTT....	25	1	2.00	2	0	2	0	0
............TGGTTACTACGAATGGTCGAAGGAGA.............................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0
......................GAATGGTCGAAGGAGAACTACCA......................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0
..............GTTACTACGAATGGTCGAAG.................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0
..........GTTGGTTACTACGAATGGTCGAAGGA...............................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0
CAAGGGAGCTGTTGGTTACTACGA...........................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0
..............GTTACTACGAATGGTCGAAGG................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0
.................ACTACGAATGGTCGAAGGAGA.............................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0
..........................GGTCGAAGGAGAACTACCAGG....................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0
..............................................................................................................................................................................................................................AGCGAGTTCGGATGGTTCCA.	20	1	2.00	2	0	2	0	0
.....................................................................................................................................................................................................................CAGACCTGCAGCGAGTTCGGATGGTT....	26	1	2.00	2	0	2	0	0
..........GTTGGTTACTACGAATGGTCGAAGGAG..............................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0
.....GAGCTGTTGGTTACTACGAATGGTC.....................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0
.........TGTTGGTTACTACGAATGGTCGAAGG................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0
....................ACGAATGGTCGAAGGAGAACTACCA......................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0
............................TCGAAGGAGAACTACCAGGAT---AGT............................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
................TACTACGAATGGTCGAAGGAGA.............................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.............GGTTACTACGAATGGTCGA...................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
........CTGTTGGTTACTACGAATGGTCGA...................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
.AAGGGAGCTGTTGGTTACTACGAATGGT......................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
............TGGTTACTACGAATGGTCGAAGGA...............................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
..............................GAAGGAGAACTACCAGGA...................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGATGGTTCC..	24	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGATG.......	21	1	1.00	1	1	0	0	0
.................ACTACGAATGGTCGAAGGAGAACTACC.......................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................TTCCAGACCTGCAGCGAGTTCGGATG.......	26	1	1.00	1	1	0	0	0
.............................CGAAGGAGAACTACCAGG....................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGATGGTTCCA.	24	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGATGGTTCC..	23	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................TGCAGCGAGTTCGGATGGTTC...	21	1	1.00	1	0	1	0	0
.................ACTACGAATGGTCGAAGGAGAA............................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................TGCAGCGAGTTCGGATGGT.....	19	1	1.00	1	0	1	0	0
........................ATGGTCGAAGGAGAACTACCAGGAT---A..............................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
...................................................................................................................................................................................................................TCCAGACCTGCAGCGAGTTCGGATGG......	26	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................TTTCCAGACCTGCAGCGAGTT.............	21	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................TTTCCAGACCTGCAGCGAGTTCGGATG.......	27	1	1.00	1	1	0	0	0
.........TGTTGGTTACTACGAATGGTCGAAG.................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
..............GTTACTACGAATGGTCGAAGGAG..............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
..........GTTGGTTACTACGAATGGT......................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
.AAGGGAGCTGTTGGTTACTACGAATGGTC.....................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................ACCTGCAGCGAGTTCGGAT........	19	1	1.00	1	0	1	0	0
.AAGGGAGCTGTTGGTTACTACGAATGGG......................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................GCAGCGAGTTCGGATGGTTCCA.	22	1	1.00	1	0	1	0	0
......................GAATGGTCGAAGGAGAACT..........................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGATGGT.....	20	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................................ATTTTCCAGACCTGCAGCGA................	20	1	1.00	1	0	1	0	0
...........................GTCGAAGGAGAACTACCAGGAT---A..............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
.......................AATGGTCGAAGGAGAACTAC........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGATG.......	18	1	1.00	1	0	0	0	1
.....................................................................................................................................................................................................................CAGACCTGCAGCGAGTTCGG..........	20	1	1.00	1	1	0	0	0
.........TGTTGGTTACTACGAATGGT......................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
..............GTTACTACGAATGGTCGAAGGAGAAC...........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................AGACCTGCAGCGAGTTCGGAT........	21	1	1.00	1	0	1	0	0
CAAGGGAGCTGTTGGTTACTACG............................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
.....GAGCTGTTGGTTACTACGAATGGT......................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................GCAGCGAGTTCGGATGGTT....	19	1	1.00	1	0	1	0	0
.AAGGGAGCTGTTGGTTACTACGA...........................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
.AAGGGAGCTGTTGGTTACTACGAAT.........................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................................AGCGAGTTCGGATGGTTCCT.	20	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................CCAGACCTGCAGCGAGTTCGGATGGT.....	26	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................GATTTTCCAGACCTGCAGC..................	19	1	1.00	1	0	1	0	0
.........TGTTGGTTACTACGAATGGTCGAA..................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
.............................CGAAGGAGAACTACCAGGAT---A..............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
................TACTACGAATGGTCGAAGGA...............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGATGGTTCCA.	27	1	1.00	1	1	0	0	0
.................ACTACGAATGGTCGAAGGAGAACTACCAG.....................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................GCAGCGAGTTCGGATGGTTCC..	21	1	1.00	1	0	1	0	0
....GGAGCTGTTGGTTACTACGAATG........................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
CAAGGGAGCTGTTGGTTACTACGAATG........................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGATGGTTC...	22	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGATGGT.....	21	1	1.00	1	0	1	0	0
........CTGTTGGTTACTACGAATGGTCGAAG.................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................GATTTTCCAGACCTGCAGCG.................	20	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGATGG......	19	1	1.00	1	0	1	0	0
......................GAATGGTCGAAGGAGAACTAC........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................GATTTTCCAGACCTGCAGCGAG...............	22	1	1.00	1	1	0	0	0
...................TACGAATGGTCGAAGGAGAACTAC........................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
......AGCTGTTGGTTACTACGAATGGTC.....................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................TGCAGCGAGTTCGGATGGTT....	20	1	1.00	1	0	1	0	0
........................ATGGTCGAAGGAGAACTACCAGGA...................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
..............GTTACTACGAATGGTCGAAGGAGAA............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
....................ACGAATGGTCGAAGGAGAACTCTT.......................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
CAAGGGAGCTGTTGGTTACTAC.............................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................CAGACCTGCAGCGAGTTCGGATGGTTC...	27	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................ACCTGCAGCGAGTTCGGATGGTTC...	24	1	1.00	1	0	1	0	0
................................AGGAGAACTACCAGGAT---AGT............................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
..........GTTGGTTACTACGAATGGTCGAA..................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
....................ACGAATGGTCGAAGGAGAACTACCAG.....................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
..................CTACGAATGGTCGAAGGAG..............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
....................ACGAATGGTCGAAGGAGAAC...........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGATGG......	20	1	1.00	1	0	1	0	0
...........TTGGTTACTACGAATGGTCGAA..................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGATGGTTCCAG	25	1	1.00	1	0	1	0	0
....................ACGAATGGTCGAAGGAGAACTACCAGGA...................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
.................ACTACGAATGGTCGAAGGAGAAC...........................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
..................CTACGAATGGTCGAAGGAGAA............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
........................ATGGTCGAAGGAGAACTACCAGGAT---...............................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
........CTGTTGGTTACTACGAATGGTCGAA..................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0

droYak3

CAAGGGATCTGTTGGCTACTACGAATGGTCTAAGGATAACTACCAAGAT---AGTACGG---GGTTTTTATTTTA--A------GCATA---------------------ATATAACTTTGT--------------------------TATAACT-AA--G-TT-T--TTAAC------------TCTTTTAGGTGACTTGCCCTGGGTTTTCCAGACCTGCAGCGAGTTCGGATGGTTCCAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................CTAAGGATAACTACCAAGAT---AGT............................................................................................................................................................................................	23	2	4.00	8	2	0	0	0	0	0	6	0	0	0	0
........................ATGGTCTAAGGATAACTACCAAGAT---AGT............................................................................................................................................................................................	28	2	2.00	4	0	0	0	0	0	0	4	0	0	0	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGATGGTT....	21	2	2.00	4	0	0	0	0	0	0	4	0	0	0	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGATGGTT....	22	2	2.00	4	2	0	0	0	0	0	2	0	0	0	0
...............................................................................................................................................................................................................GTTTTCCAGACCTGCAGCGA................	20	2	2.00	4	0	0	0	0	0	0	4	0	0	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGAT........	20	2	1.50	3	2	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................GCAGCGAGTTCGGATGGTTC...	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................GGTTTTCCAGACCTGCAGCGA................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
..............GCTACTACGAATGGTCTAAGGATAACT..........................................................................................................................................................................................................	27	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGATGGTTCC..	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGATG.......	21	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGATG.......	18	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0
................TACTACGAATGGTCTAAGGATAACTACC.......................................................................................................................................................................................................	28	2	1.00	2	1	0	0	0	0	0	1	0	0	0	0
..............................TAAGGATAACTACCAAGAT---AGT............................................................................................................................................................................................	22	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0
................TACTACGAATGGTCTAAGGATA.............................................................................................................................................................................................................	22	2	1.00	2	1	0	0	0	0	0	1	0	0	0	0
.....................CGAATGGTCTAAGGATAACTACCAAG....................................................................................................................................................................................................	26	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGATGGTT....	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGATG.......	19	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
...............CTACTACGAATGGTCTAAGGAT..............................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.....GATCTGTTGGCTACTACGA...........................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
...................TACGAATGGTCTAAGGATAAC...........................................................................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTTTCCAGACCTGCAGCGAG...............	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGATGGT.....	23	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGATGG......	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...............CTACTACGAATGGTCTAAGGATAACT..........................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.................ACTACGAATGGTCTAAGGAT..............................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
......ATCTGTTGGCTACTACGAATGGTCT....................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..................CTACGAATGGTCTAAGGATAACTACCAA.....................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
CAAGGGATCTGTTGGCTACTACGA...........................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................ACCTGCAGCGAGTTCGGAT........	19	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
..................CTACGAATGGTCTAAGGATAACT..........................................................................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
.....GATCTGTTGGCTACTACGAATGGT......................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..................CTACGAATGGTCTAAGGATAACTACCA......................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...............CTACTACGAATGGTCTAAGG................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................AC------------TCTTTTAGGTGACTTGCCCTG.....................................	23	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
.................ACTACGAATGGTCTAAGGATAAC...........................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GTTTTCCAGACCTGCAGC..................	18	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
..........GTTGGCTACTACGAATGGTCTAAGG................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.................ACTACGAATGGTCTAAGGA...............................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................TTTTCCAGACCTGCAGCGA................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..................CTACGAATGGTCTAAGGATAACTA.........................................................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
..................CTACGAATGGTCTAAGGAT..............................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
................TACTACGAATGGTCTAAGGA...............................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGATGGT.....	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................TTTCCAGACCTGCAGCGAGTTCGGATGGT.....	29	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
................TACTACGAATGGTCTAAGGAT..............................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................TGCAGCGAGTTCGGATGGG.....	19	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

CAAGGGAGCAGTTGGCTACTACGAATGGTCCAAGGAGAACTACGAAGAT---AGTACGT---GATTTCTAGTTTC--A------GCATC---------------------GTATAACTTTGT--------------------------AATAACC---TAACTT-T--TTAAC------------TCTTTTAGGTGACTTGCCCTGGATCTTCCAGACCTGCAGCGAGTTCGGTTGGTTCCAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................GGAGAACTACGAAGAT---AGT............................................................................................................................................................................................	19	1	20.00	20	1	0	0	0	16	3	0
...............................................................................................................................................................................................................ATCTTCCAGACCTGCAGCGA................	20	1	12.00	12	1	0	0	0	8	3	0
..............................CAAGGAGAACTACGAAGAT---AGT............................................................................................................................................................................................	22	1	12.00	12	0	0	0	0	12	0	0
...............CTACTACGAATGGTCCAAGGAGAA............................................................................................................................................................................................................	24	1	11.00	11	0	0	0	0	9	2	0
......................GAATGGTCCAAGGAGAACT..........................................................................................................................................................................................................	19	1	9.00	9	1	0	0	0	6	2	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGTTGGTT....	24	1	8.00	8	1	0	0	0	7	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGTTGGT.....	23	1	7.00	7	0	0	1	0	5	1	0
................TACTACGAATGGTCCAAGGAGAA............................................................................................................................................................................................................	23	1	7.00	7	1	0	0	0	5	1	0
.................ACTACGAATGGTCCAAGGAGAACT..........................................................................................................................................................................................................	24	1	7.00	7	0	0	0	0	4	3	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGTTGGTTCCA.	24	1	6.00	6	0	0	0	0	6	0	0
CAAGGGAGCAGTTGGCTACTACGAATG........................................................................................................................................................................................................................	27	1	6.00	6	0	0	0	0	6	0	0
.................ACTACGAATGGTCCAAGGAGAA............................................................................................................................................................................................................	22	1	6.00	6	0	0	0	0	4	2	0
...............CTACTACGAATGGTCCAAGGAGAACT..........................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	1	5	0
..............GCTACTACGAATGGTCCAAGGAGAA............................................................................................................................................................................................................	25	1	6.00	6	1	0	0	0	5	0	0
...............................................................................................................................................................................................................................GCGAGTTCGGTTGGTTCCA.	19	1	5.00	5	0	0	0	0	4	1	0
..............................................................................................................................................................................................................................AGCGAGTTCGGTTGGTTCCA.	20	1	5.00	5	0	0	0	0	5	0	0
................TACTACGAATGGTCCAAGGAGAACT..........................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	4	1	0
..............................CAAGGAGAACTACGAAGAT---A..............................................................................................................................................................................................	20	1	5.00	5	1	0	0	0	4	0	0
..................CTACGAATGGTCCAAGGAGAACT..........................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	1	4	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGTT........	20	1	4.00	4	1	0	0	0	0	3	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGTTGGTT....	21	1	4.00	4	0	0	0	0	3	1	0
..................CTACGAATGGTCCAAGGAGA.............................................................................................................................................................................................................	20	1	4.00	4	0	0	1	0	2	1	0
..................CTACGAATGGTCCAAGGAGAAC...........................................................................................................................................................................................................	22	1	4.00	4	1	0	0	0	2	1	0
......................GAATGGTCCAAGGAGAACTACGAA.....................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	3	1	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGTTG.......	18	1	4.00	4	0	0	0	0	1	3	0
..............GCTACTACGAATGGTCCAAGGAGAACT..........................................................................................................................................................................................................	27	1	4.00	4	1	0	0	0	2	1	0
..................CTACGAATGGTCCAAGGAG..............................................................................................................................................................................................................	19	1	4.00	4	1	0	0	0	1	2	0
.................ACTACGAATGGTCCAAGGAGA.............................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	4	0	0
..................CTACGAATGGTCCAAGGAGAA............................................................................................................................................................................................................	21	1	3.00	3	0	0	1	0	2	0	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGTT........	18	1	3.00	3	0	0	0	0	2	1	0
..............GCTACTACGAATGGTCCAAGGA...............................................................................................................................................................................................................	22	1	3.00	3	1	0	0	0	1	1	0
...............CTACTACGAATGGTCCAAGGAGA.............................................................................................................................................................................................................	23	1	3.00	3	1	0	0	0	1	1	0
...GGGAGCAGTTGGCTACTACGAATGGTC.....................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	3	0	0
................................AGGAGAACTACGAAGAT---AGT............................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	3	0	0
.................................................................................................................................................................................................................CTTCCAGACCTGCAGCGA................	18	1	3.00	3	0	0	0	0	0	3	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGT.........	19	1	3.00	3	1	0	0	0	1	1	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGTTGGTT....	22	1	3.00	3	0	0	0	0	2	1	0
...............................................................................................................................................................................................................ATCTTCCAGACCTGCAGCGAGTTCGGTT........	28	1	3.00	3	0	0	0	0	3	0	0
...............CTACTACGAATGGTCCAAGGAGAACTA.........................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	2	1	0
......................GAATGGTCCAAGGAGAAC...........................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	3	0
.....................CGAATGGTCCAAGGAGAACT..........................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	1	1	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGTTGG......	19	1	2.00	2	0	0	0	0	2	0	0
.................ACTACGAATGGTCCAAGGA...............................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2	0
............................................................................................................................................................................................................................GCAGCGAGTTCGGTTGGTT....	19	1	2.00	2	0	0	0	0	2	0	0
....GGAGCAGTTGGCTACTACGAATG........................................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	1	0	0
.................................................................................................................................................................................................................CTTCCAGACCTGCAGCGAGTTCGGTT........	26	1	2.00	2	0	0	0	0	1	1	0
....................ACGAATGGTCCAAGGAGAACT..........................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0
...........................GTCCAAGGAGAACTACGAAGAT---AGT............................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	2	0	0
......AGCAGTTGGCTACTACGAATG........................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGTTGGTTCCA.	27	1	2.00	2	1	0	0	0	1	0	0
...............................................................................................................................................................................................................ATCTTCCAGACCTGCAGCGAGTTCGGT.........	27	1	2.00	2	1	0	0	0	1	0	0
............................................................................................................................................................................................................................GCAGCGAGTTCGGTTGGT.....	18	1	2.00	2	0	0	0	0	2	0	0
........................ATGGTCCAAGGAGAACTACGAAG....................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	1	1	0
...............................................................................................................................................................................................................ATCTTCCAGACCTGCAGC..................	18	1	2.00	2	0	0	0	0	0	2	0
............................................................................................................................................................................................................................GCAGCGAGTTCGGTTGGTTCCA.	22	1	2.00	2	0	0	0	0	2	0	0
...GGGAGCAGTTGGCTACTACGAATG........................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	2	0	0
.............................CCAAGGAGAACTACGAAGAT---A..............................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0
CAAGGGAGCAGTTGGCTACTACGAAT.........................................................................................................................................................................................................................	26	1	2.00	2	1	0	0	0	1	0	0
.....GAGCAGTTGGCTACTACGAATGGT......................................................................................................................................................................................................................	24	1	2.00	2	1	0	0	0	1	0	0
.....GAGCAGTTGGCTACTACGAATG........................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0
........CAGTTGGCTACTACGAATG........................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0
................TACTACGAATGGTCCAAGGAGA.............................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	1	0	0
.....GAGCAGTTGGCTACTACGAATGGTCC....................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2	0
.............................CCAAGGAGAACTACGAAGAT---AGTAC..........................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2	0
................TACTACGAATGGTCCAAGGAGAAC...........................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2	0
......................GAATGGTCCAAGGAGAACTACGAAG....................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	1	1	0
.................ACTACGAATGGTCCAAGGAG..............................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0	0
....................ACGAATGGTCCAAGGAGAACTAC........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..............GCTACTACGAATGGTCCAAGGAGAACTA.........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.............GGCTACTACGAATGGTCCAAGG................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..............GCTACTACGAATGGTCCAAG.................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...............................AAGGAGAACTACGAAGAT---...............................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
.................................GGAGAACTACGAAGAT---AGTGAC.........................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................CTGCAGCGAGTTCGGTTGGT.....	20	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGTTGG......	22	1	1.00	1	1	0	0	0	0	0	0
..........GTTGGCTACTACGAATGGTCCAAGGA...............................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................GATCTTCCAGACCTGCAGCGAGTTC............	25	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................CTGGATCTTCCAGACCTGCAGCG.................	23	1	1.00	1	1	0	0	0	0	0	0
.................ACTACGAATGGTCCAAGGAGAAC...........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
................TACTACGAATGGTCCAAGG................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...........................GTCCAAGGAGAACTACGAAGA...................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..........GTTGGCTACTACGAATGGT......................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................TCTTCCAGACCTGCAGCGA................	19	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................GATCTTCCAGACCTGCAGC..................	19	1	1.00	1	0	0	0	0	1	0	0
....................ACGAATGGTCCAAGGAGA.............................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................GACTTGCCCTGGATCTTCCAGACCT.......................	25	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGTTGGTTC...	25	1	1.00	1	0	0	0	0	1	0	0
.....GAGCAGTTGGCTACTACGA...........................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................GCAGCGAGTTCGGTTGGTTC...	20	1	1.00	1	0	0	0	0	0	1	0
.............GGCTACTACGAATGGTCCAAGGAGAA............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.............GGCTACTACGAATGGTCCAAGGAGAACT..........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
....................ACGAATGGTCCAAGGAGAA............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
........................ATGGTCCAAGGAGAACTACGAAGAT---AGT............................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
........................ATGGTCCAAGGAGAACTACGAAGA...................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................ACCTGCAGCGAGTTCGGTTG.......	20	1	1.00	1	1	0	0	0	0	0	0
...................TACGAATGGTCCAAGGAGAACTACGAAG....................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
...............CTACTACGAATGGTCCAAGGAG..............................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................TCTTCCAGACCTGCAGCGAGTTCGGTT........	27	1	1.00	1	0	0	0	0	0	1	0
.................ACTACGAATGGTCCAAGGAGAACTACG.......................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.....GAGCAGTTGGCTACTACGAAT.........................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...................TACGAATGGTCCAAGGAGAACT..........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
CAAGGGAGCAGTTGGCTACT...............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
....GGAGCAGTTGGCTACTACGAATGGT......................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................AGACCTGCAGCGAGTTCGGTT........	21	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................TTCCAGACCTGCAGCGAGTTCGGTT........	25	1	1.00	1	0	0	0	0	1	0	0
........CAGTTGGCTACTACGAATGGTC.....................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................GATCTTCCAGACCTGCAGCGAGT..............	23	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGTTG.......	19	1	1.00	1	1	0	0	0	0	0	0
................TACTACGAATGGTCCAAG.................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
......AGCAGTTGGCTACTACGAATGG.......................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGC.........	19	1	1.00	1	0	0	0	0	0	1	0
...............CTACTACGAATGGTCCAAG.................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
..........................GGTCCAAGGAGAACTACGAAGAT---AGT............................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................GGATCTTCCAGACCTGCAGC..................	20	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGCGAGTTCGGTTGGTTCC..	19	1	1.00	1	0	0	0	0	1	0	0
........................ATGGTCCAAGGAGAACTA.........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................AGACCTGCAGCGAGTTCGGTTGGTT....	25	1	1.00	1	1	0	0	0	0	0	0
......................GAATGGTCCAAGGAGAACTACGAAGAT---A..............................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGTTGGT.....	21	1	1.00	1	0	0	0	0	0	1	0
...................TACGAATGGTCCAAGGAGAA............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
CAAGGGAGCAGTTGGCTACTACGA...........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.............................CCAAGGAGAACTACGAAGAT---AGTGA..........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.....GAGCAGTTGGCTACTACGAATGGTCCAA..................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
....................ACGAATGGTCCAAGGAGAAC...........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.................ACTACGAATGGTCCAAGGAGAACTA.........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
........CAGTTGGCTACTACGAATGG.......................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.......................AATGGTCCAAGGAGAACT..........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................ACCTGCAGCGAGTTCGGTTGGTTC...	24	1	1.00	1	0	0	0	0	1	0	0
...............CTACTACGAATGGTCCAAGGAGAAC...........................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.......GCAGTTGGCTACTACGAATGGTC.....................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................CAGCGAGTTCGGTTGGTTCCA.	21	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................TGCAGCGAGTTCGGTTGGTT....	20	1	1.00	1	0	0	0	0	1	0	0
........CAGTTGGCTACTACGAATGGTCCA...................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
..AGGGAGCAGTTGGCTACTACGAATGGT......................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................GGATCTTCCAGACCTGCAGCG.................	21	1	1.00	1	0	0	0	0	1	0	0
...............CTACTACGAATGGTCCAAGGA...............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
...........................GTCCAAGGAGAACTACGAAGAT---...............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................GGATCTTCCAGACCTGCAGCGA................	22	1	1.00	1	1	0	0	0	0	0	0
....GGAGCAGTTGGCTACTACGAAA.........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................ATCTTCCAGACCTGCAGCG.................	19	1	1.00	1	0	0	0	0	1	0	0
.AAGGGAGCAGTTGGCTACTACGA...........................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
....GGAGCAGTTGGCTACTAC.............................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................CCTGCAGCGAGTTCGGTTGGTTCCA.	25	1	1.00	1	0	0	0	0	1	0	0
..............GCTACTACGAATGGTCCAAGGAG..............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.................................GGAGAACTACGAAGAT---AGTGA..........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
......AGCAGTTGGCTACTACGAATGGTCC....................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
..........GTTGGCTACTACGAATGGTCCAA..................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
................TACTACGAATGGTCCAAGGA...............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................TCCAGACCTGCAGCGAGTT.............	19	1	1.00	1	0	0	0	0	1	0	0
...........................GTCCAAGGAGAACTACGAAGAT---AGTAC..........................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
...........................GTCCAAGGAGAACTACGAA.....................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
CAAGGGAGCAGTTGGCTA.................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................GATCTTCCAGACCTGCAGCGA................	21	1	1.00	1	0	0	0	0	1	0	0
..................CTACGAATGGTCCAAGGA...............................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
CAAGGGAGCAGTTGGCTACTAC.............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................TGACTTGCCCTGGATCTTCCA............................	21	1	1.00	1	0	0	0	0	0	1	0
.............GGCTACTACGAATGGTCCAAGGAGA.............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.............GGCTACTACGAATGGTCCAAGGAG..............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.............................CCAAGGAGAACTACGAAGAT---AGT............................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................ACCTGCAGCGAGTTCGGTTGGT.....	22	1	1.00	1	0	0	0	0	1	0	0
.........AGTTGGCTACTACGAATGGT......................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................TCTTCCAGACCTGCAGCGAGTTCGGT.........	26	1	1.00	1	1	0	0	0	0	0	0
.....................CGAATGGTCCAAGGAGAACTAC........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................GACCTGCAGCGAGTTCGGTTGGG.....	23	1	1.00	1	0	0	0	0	0	1	0
.............GGCTACTACGAATGGTCCAAGGAGAAC...........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
CAAGGGAGCAGTTGGCTACTA..............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................AGACCTGCAGCGAGTTCGGTTGGTTC...	26	1	1.00	1	1	0	0	0	0	0	0
................TACTACGAATGGTCCAAGAG...............................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0	0

dp5

TAAGGGCACCGTCAACTACTACAAATGGGCCAAGATAAACTATGAAGACGACAGTGAGT---GATATTC---TGA-------AAGGAAG---------------------------------------------AAGCCTATCCCTTTCTCATCC---CTTTCC-C---TTGT------------GTTCTCAGGCGGTCTTCCCTGGATATATCAGACTTGCAGCGAATTTGGTTGGTACCAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................CTTCCCTGGATATATCAGACTTGCAGC..................	27	1	7.00	7	0	7	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCCCTGGATATATCAGACTTGC.....................	24	1	6.00	6	0	6	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CAGACTTGCAGCGAATTTGGTT........	22	1	6.00	6	0	6	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GACTTGCAGCGAATTTGGTTG.......	21	1	5.00	5	0	5	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCCCTGGATATATCAGACTT.......................	22	1	4.00	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCCCTGGATATATCAGACTTGCAGCGA................	29	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GACTTGCAGCGAATTTGGTTGGTACC..	26	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ATATATCAGACTTGCAGCGAATTTG...........	25	1	3.00	3	0	2	0	0	0	0	1	0	0	0
........CCGTCAACTACTACAAATGGGC.....................................................................................................................................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CAGACTTGCAGCGAATTTG...........	19	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.....GCACCGTCAACTACTACAA...........................................................................................................................................................................................................................	19	2	2.50	5	0	5	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CAGACTTGCAGCGAATTTGGTTGGT.....	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATCAGACTTGCAGCGAATTTG...........	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ATATATCAGACTTGCAGCGA................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GACTTGCAGCGAATTTGGTT........	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................GCCAAGATAAACTATGAAGA...................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AGACTTGCAGCGAATTTGGTTG.......	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................GGGCCAAGATAAACTATGAA.....................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................GGGCCAAGATAAACTATGAAGA...................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATCAGACTTGCAGCGAATTTGGTTGGT.....	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CCCTGGATATATCAGACTTGCAGCGA................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CTTGCAGCGAATTTGGTTG.......	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCCCTGGATATATCAGACTTGCAGCGA................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............CAACTACTACAAATGGGCCAAGAT...............................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATCAGACTTGCAGCGAATTTGGTTG.......	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................AATGGGCCAAGATAAACTATGAAGA...................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................GGGCCAAGATAAACTATGAAGAC..................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ATATATCAGACTTGCAGCGAATTTGGTT........	28	1	2.00	2	0	1	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................TCCCTGGATATATCAGACTTGCA....................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ATATCAGACTTGCAGCGAATTTGGTTG.......	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................ATAAACTATGAAGACGACAGC............................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0
...............CTACTACAAATGGGCCAAG.................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CCCTGGATATATCAGACTTG......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................CTACAAATGGGCCAAGATAAACTATGA......................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........GTCAACTACTACAAATGGGC.....................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................CAAATGGGCCAAGATAAACTATGA......................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................AATGGGCCAAGATAAACT..........................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AGACTTGCAGCGAATTTGGTTGG......	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCCCTGGATATATCAGACT........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CAGACTTGCAGCGAATTTGGT.........	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................TCCCTGGATATATCAGACTTGCAGC..................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGCGAATTTGGTTGGTACC..	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................AATGGGCCAAGATAAACTATGA......................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................TTCTCATCC---CTTTCC-C---TTGT------------GTTCT.....................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCCCTGGATATATCAGACTTGCA....................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TGCAGCGAATTTGGTTGGTACC..	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................ACTACAAATGGGCCAAGATAAACTATGA......................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CTTGCAGCGAATTTGGTTGG......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................ATGGGCCAAGATAAACTATGAAGACG.................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ATATCAGACTTGCAGCGAAT..............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................CTACAAATGGGCCAAGATAAACTAT........................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................AATGGGCCAAGATAAACTATGAAGAC..................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATCAGACTTGCAGCGAATTTGGTT........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............AACTACTACAAATGGGCCAAG.................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCCCTGGATATATCAGACTTG......................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATCAGACTTGCAGCGAATTTGG..........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........CGTCAACTACTACAAATGGGCC....................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................TGGGCCAAGATAAACTATGAAGA...................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCCCTGGATATATCAGACTTGC.....................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CCCTGGATATATCAGACTTGCAG...................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ATATATCAGACTTGCAGCGAATTT............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................CAAATGGGCCAAGATAAAC...........................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................AAATGGGCCAAGATAAACTATGAA.....................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................ATGGGCCAAGATAAACTATGA......................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
TAAGGGCACCGTCAACTACTAC.............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................AAACTATGAAGACGACAGC............................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TGCAGCGAATTTGGTTGGTACCA.	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........CCGTCAACTACTACAAATGG.......................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TATCAGACTTGCAGCGAATTTG...........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ATATATCAGACTTGCAGCG.................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................GGCCAAGATAAACTATGAAG....................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AGACTTGCAGCGAATTTGGTT........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TCAGACTTGCAGCGAATTTGG..........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............CAACTACTACAAATGGGCCAAGATAAACT..........................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................ACTACAAATGGGCCAAGAT...............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................GGGCCAAGATAAACTATGA......................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................GATAAACTATGAAGACGACAGC............................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCCCTGGATATATCAGA..........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GATATATCAGACTTGCAGCGA................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................ATATCAGACTTGCAGCGAATTTG...........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTCCCTGGATATATCAGACTTGCAGC..................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....GCACCGTCAACTACTACAAAT.........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............CTACTACAAATGGGCCAAGA................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GACTTGCAGCGAATTTGGTTGG......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................GGCCAAGATAAACTATGAA.....................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................ATAAACTATGAAGACGACA..............................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................CTACAAATGGGCCAAGATAAACTATG.......................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CCCTGGATATATCAGACTT.......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CAGACTTGCAGCGAATTTGGTTGG......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CTTGCAGCGAATTTGGTTGGTACCA.	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............CAACTACTACAAATGGGCC....................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TATATCAGACTTGCAGCGAATTTGGTT........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TATCAGACTTGCAGCGAATTTGGTTG.......	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TATCAGACTTGCAGCGAATTTGGTTGG......	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ATATCAGACTTGCAGCGAATTTGGTT........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................CTACAAATGGGCCAAGATA..............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GATATATCAGACTTGCAGCGAATTTG...........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCCCTGGATATATCAGACTTGCAGCG.................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TAAGGGCACCGTCAACTACTACAAATGGGCCAAGATAAACTATGAAGACGACAGTGAGT---GATATTC---TGA-------AAGGAAG---------------------------------------------AAGCCTATCCCTTTCTCATCC---CTTTCC-C---TTGT------------GTTCTCAGGCGGTCTTCCCTGGATATATCAGACTTGCAGCGAATTTGGTTGGTACCAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................CAGACTTGCAGCGAATTTG...........	19	1	3.00	3	0	0	0	0	0	3
.......................................................................................................................................................................................................................GACTTGCAGCGAATTTGGTTG.......	21	1	2.00	2	0	1	0	0	0	1
...............................................................................................................................................................................................................ATATATCAGACTTGCAGCGAATTTG...........	25	1	2.00	2	0	0	0	0	0	2
...............................................................................................................................................................................................................ATATATCAGACTTGCAGCGA................	20	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................................................................AGACTTGCAGCGAATTTGGTTG.......	22	1	1.00	1	0	1	0	0	0	0
......CACCGTCAACTACTACAA...........................................................................................................................................................................................................................	18	2	1.00	2	1	0	1	0	0	0
...................................................................................................................................................................................................................ATCAGACTTGCAGCGAATTTG...........	21	1	1.00	1	0	0	0	0	0	1
.............................CCAAGATAAACTATGAAGAC..................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................AGACTTGCAGCGAATTTGGTTGGT.....	24	1	1.00	1	0	0	0	0	0	1
..........................GGGCCAAGATAAACTATGAAGACGACAG.............................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
..............................CAAGATAAACTATGAAGACGACA..............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................CTTCCCTGGATATATCAGACTTGC.....................	24	1	1.00	1	0	1	0	0	0	0
........................................TATGAAGACGACAGTGAGT---GAT..................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.................ACTACAAATGGGCCAAGATAAACTATGA......................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................CTTGCAGCGAATTTGGTTG.......	19	1	1.00	1	0	0	0	0	0	1
.................................GATAAACTATGAAGACGACAGTGAGT---GA...................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................TTCCCTGGATATATCAGACTT.......................	21	1	1.00	1	0	1	0	0	0	0

droWil2

TCAAGGAGCCGTAGACTACTACAAATGGTCCATGGACAACTATCAAGGC---AGTGAGT---ATCTCA--------------CAAGAAC---TT---T-------AAC--AT------TTAC--------------------------AA------TT--A-ATT-AA-CTGCTTCACTTAATCAATATTCAGCTGGCATTGCATGGACTTATCAAACTTGCAACGAATTCGGTTGGTTCCAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

TAAGGGAACTGTTGCCTATTACAAATGGTCAATGGACAACTACGATGGT---TGTAAGT---ATATAC---TGG---CATAACA------AATT---G-----------------ACCAAG-----------------------------TAAAG-TA--A-ATC-AT-TTCT------------TCTCTTAGCTGGTCTTGCTTGGTTCTATCAAACATGCAGAGAATTTGGCTGGTTTCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................................................TCTATCAAACATGCAGAGA................	19	1	5.00	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........GTTGCCTATTACAAATGGT......................................................................................................................................................................................................................	19	1	4.00	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GCCTATTACAAATGGTCAATGGAC..............................................................................................................................................................................................................	24	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GGTTCTATCAAACATGCAGA..................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0
...GGGAACTGTTGCCTATTACAAATGGT......................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GTTCTATCAAACATGCAGAG.................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
...................TACAAATGGTCAATGGACAACTACGATG....................................................................................................................................................................................................	28	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GTTCTATCAAACATGCAGA..................	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAATGGACAACTACGATGGT---TC.............................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ATTACAAATGGTCAATGGA...............................................................................................................................................................................................................	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AAATGGTCAATGGACAACTACGATGGT---...............................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TACAAATGGTCAATGGACAACTACG.......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CTTGGTTCTATCAAACATGCAGAGA................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GGTTCTATCAAACATGCAGAGAATTT............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TTGCCTATTACAAATGGT......................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AACTGTTGCCTATTACAAATGGTC.....................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AAACATGCAGAGAATTTGGCTGGT.....	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CTCTTAGCTGGTCTTGCTTG.....................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GCCTATTACAAATGGTCAATGGACA.............................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AAACATGCAGAGAATTTGGCTG.......	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CAAATGGTCAATGGACAACT..........................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACAAATGGTCAATGGACAA............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GGTTCTATCAAACATGCAGAGAATT.............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TGGTTCTATCAAACATGCAGAGA................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TATCAAACATGCAGAGAATTTGGCTG.......	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CTATCAAACATGCAGAGAATTTGGCTG.......	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AAACATGCAGAGAATTTGGC.........	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CTGGTCTTGCTTGGTTCT................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................T-TTCT------------TCTCTTAGCTGGTCTT..........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATCAAACATGCAGAGAATTTGGCTGGT.....	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................AACATGCAGAGAATTTGGCTGGTTTC..	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................CTGGTCTTGCTTGGTTCTATCAAA..........................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TCTATCAAACATGCAGAGAATTTGG..........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CATGCAGAGAATTTGGCTG.......	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............CTATTACAAATGGTCAATGGACA.............................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GGTTCTATCAAACATGCAGAGA................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................ATGCAGAGAATTTGGCTGGTTTC..	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAATGGACAACTACGATG....................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAATGGACAACTACGATGGT---T..............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACAAATGGTCAATGGACAACTAC........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CTGGTCTTGCTTGGTTCTATC.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TTGGTTCTATCAAACATGC.....................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TACAAATGGTCAATGGAC..............................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TCAAACATGCAGAGAATTTGG..........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATGGTCAATGGACAACTACGATGGT---...............................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....GAACTGTTGCCTATTACAAATGGTC.....................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AGGGAACTGTTGCCTATTACA............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACAAATGGTCAATGGACAAC...........................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TGGTTCTATCAAACATGC.....................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GAACTGTTGCCTATTACAAATG........................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TTGGTTCTATCAAACATGCAGAGA................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ATAACA------AATT---G-----------------ACCAAG-----------------------------TAAAG-TA--...................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GAACTGTTGCCTATTACAAATGGT......................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AACATGCAGAGAATTTGG..........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGCTTGGTTCTATCAAACATGCAGA..................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ATGGACAACTACGATGGT---T..............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ATTACAAATGGTCAATGGAC..............................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTACAAATGGTCAATGGAC..............................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TGGTTCTATCAAACATGCAGAG.................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATCAAACATGCAGAGAATTTGGC.........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CTATCAAACATGCAGAGAATT.............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAATGGACAACTACGATGGT---TGTAAGT---.....................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................ATCAAACATGCAGAGAATT.............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AACTGTTGCCTATTACAAATGGT......................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATCAAACATGCAGAGAATTTGGCT........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................GGTTCTATCAAACATGCAGAG.................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ACTGTTGCCTATTACAAATG........................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................ATGCAGAGAATTTGGCTG.......	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CTATTACAAATGGTCAATGG................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TGGTTCTATCAAACATGCAGA..................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................CAAACATGCAGAGAATTTGGCTG.......	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AAGGGAACTGTTGCCTATT...............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ATGGACAACTACGATGGT---TGTAAGT---.....................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................TACAAATGGTCAATGGACAACT..........................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CTGTTGCCTATTACAAATGGTC.....................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCAGGAAACTGTTGATTATTACAAATGGGTCAAGAATAACTACAATGGTAATCGTAAGTAGAGCCGTATACCTCA-------AAAGACG---------------------CTGTAAATCAAA--------------------------TATGAAC-TA--T-TT---T-TTTA------------CTTCTTAGTACATCTCAGCTGGTTCTATCAAACATGCAGACAATTTGGTTGGTTCCAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TAAAGCAACTGTTAAATATTACAAGTGGGCAATGCATAACTATGATGGT---TGTAAGT---GACACCT---TGT----TAAATGAATG---------------------ATGAATACTAAG--------------------------TCTGACG-AA--T-CAA-A--TAAC----------TCTTTCTTAGCTGGTCTCAGCTGGTTCTTTCAAACATGCAACGAATTCGGCTGGTACCAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_3106

scaffold_13340:15164019-15164093 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads