ID:

dan_3062

 Coordinate:

scaffold_13340:13110857-13111007 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.9 -3.9 -3.8

Flybase annnotation

CDS [Dana\GF18326-cds]; exon [dana_GLEANR_19584:4]; intron [Dana\GF18326-in]

Repeatable elements

NameClassFamilyStrand
Hoana1DNAhAT-hobo+
Helitron-2N1_DVirRCHelitron-
mature
  1. scaffold_4144:421-445 +
  2. scaffold_12038:6928-6952 -
  3. scaffold_12944:79834-79858 -
  4. scaffold_13034:622270-622294 +
  5. scaffold_13034:1507342-1507366 -
  6. scaffold_13099:1275609-1275633 -
  7. scaffold_13099:1467001-1467025 +
  8. scaffold_13137:1085297-1085321 +
  9. scaffold_13230:2664261-2664285 +
  10. scaffold_13230:2750172-2750196 -
  11. scaffold_13250:2696087-2696111 +
  12. scaffold_13250:3070354-3070378 +
  13. scaffold_13260:1921131-1921155 +
  14. scaffold_13260:1921955-1921979 +
  15. scaffold_13282:146238-146262 -
  16. scaffold_13326:444-468 +
  17. scaffold_13337:21552530-21552554 -
  18. dan_3062  scaffold_13340:13110904-13110928 +
  19. scaffold_13417:4459603-4459627 +
  20. scaffold_13417:6146422-6146446 -
  21. scaffold_13034:347893-347917 -
  22. scaffold_13250:413493-413517 -
  23. scaffold_13250:1012322-1012346 -
  24. scaffold_13250:2645728-2645752 -
  25. scaffold_13260:1978281-1978305 -
  26. scaffold_13333:65013-65037 -
  27. scaffold_13417:4279649-4279673 -
star
  1. scaffold_7964:4138-4162 -
  2. scaffold_9717:3817-3841 -
  3. scaffold_12911:1942827-1942851 -
  4. scaffold_12947:1557865-1557889 -
  5. scaffold_12948:660302-660326 -
  6. scaffold_13034:964562-964586 -
  7. scaffold_13082:3497775-3497799 -
  8. scaffold_13082:3860198-3860222 -
  9. scaffold_13099:1700379-1700403 -
  10. scaffold_13111:131776-131800 -
  11. scaffold_13239:42576-42600 -
  12. scaffold_13250:963278-963302 -
  13. scaffold_13250:968610-968634 -
  14. scaffold_13250:1271595-1271619 -
  15. scaffold_13260:1130877-1130901 -
  16. scaffold_13266:19171194-19171218 -
  17. scaffold_13266:19677513-19677537 -
  18. scaffold_13280:255467-255491 -
  19. dan_3683  scaffold_13417:1759705-1759729 -
  20. scaffold_13417:3055241-3055265 -
  21. scaffold_891:664-688 +
  22. scaffold_6600:520-544 +
  23. scaffold_10202:828-852 +
  24. scaffold_12947:1466467-1466491 +
  25. scaffold_12975:9072-9096 +
  26. scaffold_13034:808245-808269 +
  27. scaffold_13034:1435166-1435190 +
  28. scaffold_13045:801579-801603 +
  29. scaffold_13045:925094-925118 +
  30. scaffold_13052:10438-10462 +
  31. scaffold_13077:436978-437002 +
  32. scaffold_13099:1467033-1467057 +
  33. scaffold_13099:2592458-2592482 +
  34. scaffold_13230:1227763-1227787 +
  35. scaffold_13230:1400105-1400129 +
  36. scaffold_13230:3529200-3529224 +
  37. scaffold_13260:1921987-1922011 +
  38. dan_3062  scaffold_13340:13110936-13110960 +
  39. scaffold_13417:1781615-1781639 +
  40. scaffold_13417:6802804-6802828 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAGACGGACAGACGGACAGACGGACAGACGGACATGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACAGCGTTGCACACTTTTGACCAAAATTATAATACCCTCTGCAAGGGTATAAAAAGCAACTATTCCGTTAATAATTCCTGTACATCGCCTGCAGCTGATTACCTCAAAATCCTAAACGAGCTGACGACTTTGTTCGGCATGAAT
*************************************************************************************************....(((((((.((.((........(((.....))).......)).)).)).)))))************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V039
embryo
 V105
male body
.................................................................................................TGTCTCCTTCACAGCGTTGCACACT................................................................................................................................. 25 0 20 0.60 12 10 1 0 1 0
...........................................................................ATATACTTTATAGGGTCGGAGATG........................................................................................................................................................ 24 0 20 0.55 11 0 11 0 0 0
......................................TCATATCGACTCAGGAGGTGATCC............................................................................................................................................................................................. 24 0 20 0.35 7 0 0 7 0 0
..........................................................................................TCGGAGATGTCTCCTTCACAGCGTTG....................................................................................................................................... 26 0 20 0.20 4 1 3 0 0 0
..................................................................................................GTCTCCTTCACAGCGTTGCACACTTT............................................................................................................................... 26 0 20 0.20 4 1 3 0 0 0
....................ACGGACAGACGGACATGCTC................................................................................................................................................................................................................... 20 0 20 0.20 4 0 0 4 0 0
........................................................................................................................CTTTTGACCAAAATTATAATACCCTC......................................................................................................... 26 0 20 0.15 3 3 0 0 0 0
..................................ATGCTCATATCGACTCAGGAGGTGAT............................................................................................................................................................................................... 26 0 20 0.15 3 0 3 0 0 0
...................................................................................................TCTCCTTCACAGCGTTGCACAC.................................................................................................................................. 22 0 20 0.15 3 3 0 0 0 0
...............................................................................................GATGTCTCCTTCACAGCGTTGCACA................................................................................................................................... 25 0 20 0.15 3 2 0 0 1 0
...................................................................................TATAGGGTCGGAGATGTCTCCTTC................................................................................................................................................ 24 0 20 0.15 3 0 0 0 0 3
.................................................................................................TGTCTCCTTCACAGCGTTGCACAC.................................................................................................................................. 24 0 20 0.15 3 3 0 0 0 0
..................................................................................................GTCTCCTTCACAGCGTTGCACA................................................................................................................................... 22 0 20 0.10 2 0 2 0 0 0
.................................................................................TTTATAGGGTCGGAGATGTCTCC................................................................................................................................................... 23 0 20 0.10 2 0 2 0 0 0
..................................ATGCTCATATCGACTCAGGAGGT.................................................................................................................................................................................................. 23 0 20 0.10 2 0 0 0 2 0
..........................................................................................TCGGAGATGTCTCCTTCACAGCGTTGC...................................................................................................................................... 27 0 20 0.10 2 1 1 0 0 0
...................................................................................................TCTCCTTCACAGCGTTGCACACTT................................................................................................................................ 24 0 20 0.10 2 1 1 0 0 0
.....................................................................................................TCCTTCACAGCGTTGCACACTTT............................................................................................................................... 23 0 20 0.10 2 0 2 0 0 0
...................................................................................................TCTCCTTCACAGCGTTGCACACTTTT.............................................................................................................................. 26 0 20 0.10 2 2 0 0 0 0
.................................................................................................................................AAAATTATAATACCCTCTGCAAGGG................................................................................................. 25 0 20 0.10 2 2 0 0 0 0
......................................................GGTGATCCTGATCAAGAATAT................................................................................................................................................................................ 21 0 20 0.10 2 0 0 0 0 2
.............................................................................................GAGATGTCTCCTTCACAGCGTTGCACA................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
..................................................................................................GGCTCCTTCACAGCGTTGCACA................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0
..................................................................................................GTCTCCTTCACAGCGTTGCACAC.................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
........................................................................................................TTCACAGCGTTGCACACTTT............................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
................................................................................................ATGTCTCCTTCACAGCGTTGCACACT................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0
..................................................................................................GTCTCCTTAACAGCGTTGCACACT................................................................................................................................. 24 1 20 0.05 1 0 1 0 0 0
....................................................................................................CTCCTTCACAGCGTTGCACACT................................................................................................................................. 22 0 20 0.05 1 0 0 0 1 0
...................................................................................................TCTCCTTCACAGCGTTGCACACTTT............................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
.....................................................................................................TCCTTCACAGCGTTGCACACTTTTG............................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
...............................GACATGCTCATATCGACTCAGG...................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
...................................................................................................TCTCCTTCACAGCGTTGCACACTTC............................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
..................................................................................................GTCTCCTTCACAGCGTTGCACACT................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0
..................................................................................................GTCTCCCTGACAGCGTTGCACACT................................................................................................................................. 24 2 20 0.05 1 0 1 0 0 0
.................................................................................................TGTCTCCTTCACAGCGTTGCACA................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.................................................................................................TTTCTCCTTCACAGCGTTGCACAC.................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0
.......................................................................................GGGTCGGAGATGTCTCCTTCACA............................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
................................................................................................ATGTCTCCTTCACAGCGTTGC...................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
..................AGACGGACAGACGGACATGCTCAT................................................................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0
............................................................................................................CAGCGTTGCACACTTTTGACC.......................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
.........................CAGACGGACATGCTCATATCGAC........................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
...................................................................................................TCTCCTTCACAGCGTTGCACACT................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
..................................................................................................GTCTCCTTCACAGCGTTGCAC.................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
...................................TGCTCATATCGACTCAGG...................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 1 0
..................................................................................................GTCTCCTTCACAGCGTTGCACACTTTT.............................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
.....................................................................................................TCCTTCACAGCGTTGCACACTTTTGA............................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0
................................................................................CTTTATAGGGTCGGAGATGTCTC.................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.................................................................TCAAGAATATATATACTTTATA.................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
.................................................................................................TGTCTCCTTCACAGCGTTGGACACT................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0
......................................................GGTGATCCTGATCAAGAATATATATAC.......................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
...................................................................................................TCTCCTTCACAGCGTTGCACACTTTG.............................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0
.................................................................................................TGTCTCCTTCACAGCGTTGCACACTTT............................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TGTCTGCCTGTCTGCCTGTCTGCCTGTCTGCCTGTACGAGTATAGCTGAGTCCTCCACTAGGACTAGTTCTTATATATATGAAATATCCCAGCCTCTACAGAGGAAGTGTCGCAACGTGTGAAAACTGGTTTTAATATTATGGGAGACGTTCCCATATTTTTCGTTGATAAGGCAATTATTAAGGACATGTAGCGGACGTCGACTAATGGAGTTTTAGGATTTGCTCGACTGCTGAAACAAGCCGTACTTA
*************************************************************************************************....(((((((.((.((........(((.....))).......)).)).)).)))))************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M044
female body
 V106
head
 M058
embryo
..............................................................................................................................................................................................................................TGCTCGACTGCTGATACG........... 18 2 2 0.50 1 1 0 0 0
.......................................................................................................................................................................................................................GAGGCTGTGCTCGACTGCTG................ 20 3 4 0.25 1 0 0 1 0
.......................CTGTCTGCCTGTACGAGTATAGCT............................................................................................................................................................................................................ 24 0 20 0.25 5 0 5 0 0
.....................GCCTGTCTGCCTGTACGAGTA................................................................................................................................................................................................................. 21 0 20 0.15 3 3 0 0 0
....................................................CTCCACTAGGACTAGTTCTTATATA.............................................................................................................................................................................. 25 0 20 0.15 3 0 0 0 3
...............................................................................................................................................................................................................................GCTCGACCGCTGAAACGA.......... 18 2 7 0.14 1 0 1 0 0
....................................CGAGTATAGCTGAGTCCTCCACTAGGAC........................................................................................................................................................................................... 28 0 20 0.10 2 0 0 2 0
...............................................................................................CTACAGAGGAAGTGTCGCAACGTGT................................................................................................................................... 25 0 20 0.10 2 0 2 0 0
.................................................................................................ACAGAGGAAGTGTCGCAACGTGTGAA................................................................................................................................ 26 0 20 0.10 2 0 2 0 0
........................TGTCTGCCTGTACGAGTATAGCTGAGT........................................................................................................................................................................................................ 27 0 20 0.10 2 0 2 0 0
............................................................................................CCTCTACAGAGGAAGTGTCGCAAAGT..................................................................................................................................... 26 1 20 0.05 1 0 0 0 1
....TGCCTGTCTGCCTGTCTGCCTG................................................................................................................................................................................................................................. 22 0 20 0.05 1 0 0 1 0
.................................................................................................................AACGTGTGAAAACTGGTTTTAATAT................................................................................................................. 25 0 20 0.05 1 0 0 1 0
.............................................................................................................TCGCAACGTGTGAAAACTGGTTTTAA.................................................................................................................... 26 0 20 0.05 1 1 0 0 0
...............CTGTCTGCCTGTCTGCCTGTA....................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1
.............GCCTGTCTGCCTGTCTGCCTGTACG..................................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0
.............................................................................................CTCTACAGAGGAAGTGTCGCAACGT..................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
.................................................................................................ACAGAGGAAGTGTCGCAACGTGTGAAA............................................................................................................................... 27 0 20 0.05 1 0 1 0 0
..............................................................................................................................................GGAGACGTTCCCATATTTTTCGT...................................................................................... 23 0 20 0.05 1 0 0 0 1
........................................................................................CCAGCCTCTACAGAGGAAGTGTCGC.......................................................................................................................................... 25 0 20 0.05 1 0 0 0 1
...................................................................................................AGAGGAAGTGTCGCAACGTGTGAAA............................................................................................................................... 25 0 20 0.05 1 0 0 0 1
........................................................................................CCAGCCTCTACAGAGGAAGTGTCGCAA........................................................................................................................................ 27 0 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:13110807-13111057 + dan_3062 ACAGACGGACAGACGGACAGACGGACAGACGGACATGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAAT-------ATATATACTTTATAGGGTC-GGAGATGTCTCCTTCACAGCGTTGCACACTTTT-GACCAAAATTATAATACCCTCTGCA-----------------------------------------AGGGTATAAAAAGCAAC---------------------------TATT-------C-------------------------CGTTAATAATTCC-------T-------------------GTAC----------------------------AT------------------CGCCTGCAGCTGATTACCTCAA------------------------------------------------------AA----------------------------TCCTAAACGAGCTGACGACTTTGTTCG---GCATGAAT
droBip1 scf7180000396786:5623-5874 - ACAGACGGACAGACGGACAGACGGACAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAAT-------ATATATACTTTATAGGGTC-GGAGATGTCTCCTTCACTGCGTTGCACACTTTT-GGACAAAATTATAATACCCTCTGCA-----------------------------------------AGGGTATAAAAAATTAAAATCGA-------GGAGACA--------ATT----------------------------------------------------GTTGG----------------------------------------CT----ATAG----------------------CACTGCCAACT---C-------------------------------------------------CAATGTCAAATGT---------------------------TTAAATAATAATAAAAATTTGTTCA---GAATTAAT
droKik1 scf7180000299789:4473-4701 - ACAGACGGACGGAC--------GGACAGACGGACATGGCTAAATCGACTCGGCTGTTGATACTGATCAAGAAT-------ATATATACTTTATAGGGTC-GGAAAGGTCTCCTTCACTGCGTTGCAAACTTCT-GACTGAAATTATAATACCCT--GCA-----------------------------------------AGGGTATAAAAATAGTC---------------------------TATT-ATGTC-TCA---------------------------AATAGCTCT-------T-------------------ATTT----------------------------AC------------------TGTTCATGGTTAATGAAATCAAAAA------------------------------------------------------------------------------------------------TTATTCTGATCA---GCATGAA-
droFic1 scf7180000454015:397436-397674 + ACAGACAGACAGACGGACAGACGGACAGACGTACATACATATTTCGATTCAGATGGTGATGCTGATCAAGAAT-------ATATATACTTTATGGGGTC-TGAGGTGTCTCCTTCACTGCGTTGCAAACTTCT-GACTGAAATTATAATACCCTTT------------------------GC-T------CTGCA-----AGGGTATAATTATTTAG-------------------------A--AAT----------------------------------------------------CTATACATCGTGTTAATCTTTGAAT----TTGC-------------------------------------------TCTTAA-------------------------------------------------------------------AA----------------------------TTATATATTAAATAACAACTCTTTTC------------
droEle1 scf7180000490516:33550-33809 - ACGGACGGACAGACGG----ACGGACAGACGGATATGGCTAGATCGACTCGCCTAGTGATGCTGATCAAGAAT-------ATATATACTTTATAGTGTC-GGAGATGTCTTCTTCACTGCGTTGCAAACTTCT-GACTGAAATTATAATACCCTCTGCA-----------------------------------------AGGGTATAAAACCAGAAAACCAACTTTTTGAGAAACA--------CTA----------------------------------------------------G-----------------TTTGAAT----TTGC------------CTATTC--AG------------------CACGTTTTTCTAC-------------------------------------CTT-TCTT-CA--------------AAC----------------------------TCGGAAAAAGGATTCCAACTTTGTTCA---GC------
droRho1 scf7180000765081:308-560 + ACAGACGGACAGACGGACAGACGGACAGACGGACATGGCTATATCAACTCAGGAGGTGATCCTGATCAAGAAT-------ATATATACTTTATAGGGTC-GGAGATGTCTCCTTCACTGCGTTGCACACTTTT-GACCAAAATTATAATACCCTCTGCA-----------------------------------------AGGGTATAAAAATAGGA-------TT------------TGG-A--A--------------------------------------------A---------------------------------------------------------------------------------------------GAT-------------------------TCATGTCAA-----TAGCTTGTATACTGC-------------GTGAAATATCCTAAAAATCATTAAATTTTAACCGATTTTACCCTTTTGTTC------------
droBia1 scf7180000301181:81519-81754 - ACAGACAGAC----GGTCAGACGGACATACGAACATGGCTAGATCGACTCGTCTAGTGACGCTGCTCAAGAAT-------ATATATTCTTTATGGGGTC-GGAAACGTCTCCTTCACTGCGTTGCAAGCTTCT-GACTGAAATTATTATACCCCCTGCA-----------------------------------------AGGGTATAAAAATGATA---------------------------TGAT-------C--------------------------------------------CTTTTTAACATGTACACCCTT---------------------------------------------------------GCAGCT----------------------------AC------------------AA-------------AAAA----------------------------TAATCAAC--GCTAGTAACACCGTGTG---ATATTATT
droTak1 scf7180000414002:135447-135691 - ACAGACGGACAGACGGACAGACGGACAGACGGACATGGCTAGATCGACTCGTCTTGTGATGCTGATCAAGAAT-------ATATATACTTTATGGGGTC-GGAAACGTCTCCTTCACTGCGTTGCAAACTTCT-GACTGAAATCATAATACCCTCTGCA-----------------------------------------AGGGTATAAATATTTTT---------------------------TATG-CTCTCCCTA--------------------------------CCCA-------T---------------TTCCAT--------------------------------------------------CATCTCAACTTGACCATTTCAA----TATCCTGGCTGAA-----------GT------------------------------------------------------------------------CCGTACTCA---GCTTAACT
droEug1 scf7180000408987:416185-416440 - ACGGACGGACGGACGGATGGACCGACAGACGGACATGGCTCAATCGACTTCGCTATTGATCCTGATCAAGAAT-------ATATATACTTTATAGGGTC-GGAAACGA--CCTTCTATCTGTTACATACTTTT-CAACGAATCTAGTATACCCTT-----------------------TTAC-T------CTACTAGTAACGGGTATAATAAATAAT---------------------------GATA-------A-------------------------AAAGCATATTTCA-------A-------------------ACAC----------------------------AT------------------CAACCTTGGAAGCT-------------------------TCCTGCTAAGT-----------------------------CTGC---GAAGC--------------------------TTGACGTTTTTGCTCT---ATATG---
dm3 chr3LHet:208551-208778 - -----------GACGTCCATGCGGACAGACGGATATGGCTAGATCGACTCGGCTATTGATCCTGATCAAGAAT-------ATATATACTCTATGTAACC-GAAAACGCTTGCTTCTGCCACTTACATACTTTG-CAACGAATCTAGTATACTCTT-----------------------TTAC-T------CTACGAGTAACGGGAATAAATATAATA----------------------------ATT----------------------------------------------------TTTTACAACATAGAAATTGTT------------------------------------------------------------------------------------------------------------------------CGACATCAAA----------------------------TCTTAAATATAATTAAGGCCTTGTCCG-----------
droSim2 4:631184-631425 - ACGGACGGAAAGACAG--------ACGGACTGACATGGCTAGATCGACTCGGCTATTGATCTAGATCAAGAAT-------ATGTATACTTCAAGGG--T-GGAATCTATTTCTTATACCTGTTACATACTTTT-CTACGAATCTAGTATATTAAC-----------------------TTCC-T------ATACGAGTTACGGGTATAAAAATGTGG--------------A-----TTGC----------------A---------------------------A----A----------T-------------------GT----------------------CT-----CATTCACTT------------TGTTTGCAAAGTA-------------------------------------------------------CGACGACAA-----------AG------------------TT--------AGACGATTTTTTTTGGTTTTATGGAC
droSec2 scaffold_60:70918-71143 - ACGTACG------------------------GACATTGCCAGATCGACTGGGCTGGTGATCCTAATCAAGAAT-------ATAAATACTTTATATGATA-GGAAACGATTTTCTTTTTCAAT----AACTTTT-GT------TTAAAATATCCTTTAAA-----------------------------------------ATACTTTAAATTTGAAG---------------------------TAGTACTCACTTTATCATTTTT-----------------------------------A-------------------ATACACGGTGTAAACCACATCTTCATAAAAACTTC---------------------------------------------------------CGTAACAAGT-----------------------------TT---------------------------TTGA---------ATGCCTTCTTCG---TCATGAA-
droYak3 3R:8748890-8749143 - ACAGACGGACAGACAGACGGACGGACAGACGGACATGGCCAAATCGATTCGGCTATTGATCCTGATCAAGAAT-------ATATATACTTTATATGGTC-GGAAACGCTTCCTTCTGCCTGTTACATACTTTT-CAACGAATCTAGTATACCCTT-----------------------TTAC-T------CTACGAGTAACGGGTATAACAATTGCG----------------------------A-----------------------------------------------------------------------------------TGCAACTCAAGTCTGCCTGGGGACTTCCCCTT------------TGGCTGCA------------------------------------------GT--GCCTCGT---------------AA----------------------------ATCGAATGAAGCACACGACTTCGT--------------
droEre2 scaffold_4845:3290301-3290511 + ACGGACGGACAGACAGACGGACGGACAGACGGACATGGCCAGATCGACTCGGATATTGATCCCGATCAAGAAT-------ATATATACTTTATATGATC-GGAAAAGCTTTCTCCTGCGTGTTACATACTTTT-CAACGAATCTAATATACCCTTTACT-------------------------------CGGTGAGTATCGAGTATTACAATTTAA--------------A-----TAAC----------------A---------------------------A----T----------T-------------------AC----------------------CT------TT--TCTT------------CAATTGCTACCGATT---------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_singleton_3000:498-769 - ACAGACGGACGGACGG--------ACAGGCAGACAGGGCTCAATCGACTCAGCTATTGATGCTGATCAAGATCAAAGTATATATATACTTTATGGGGTC-GGAAACAGTTCCTTCTGGACGTTACACACATCC-AC----TTTTA------------CCACAAATCGAATATACCCCAATAC-TTA----TTTTGAGTATCGGGTATAAAAATAACA-------TTTTTGATGATCA--------A--------------------------------------------TCGA-------T---------------ATCTAT-------------------------------------------------------------------------------CGTTGCTGAT-----------GG-TCGCGTCTTTACTTC-------------GC---GCCGCCTGACAA-----------------------TTATTTTGTTCG---GTAAGGAG
droPer2 scaffold_3:275848-276113 + ACGGACGGACGGACGGACGGACGAACGGACAGACATGGGTCTATCGACTCGGCTATTGATGCTGATCAAGAAT---ATACATATATACTTTATGGGGTC-GGAAAGTCTTTCTTCTGGACGTTACACA-----------AATCCAATATACCCCT-----------------------ATAC---------------------------AAATTGGA--------------------ATGCGCTTATT-------CCAATGTTTTTAATGGCATATCGCTCCGGAAAACATGTT-------A-------------------GAAC----------------------AGCGACCACGC---CGGCG----------------------ACAGCAA------------------------------------------------------TA----------------------------TTTTAAACGATTTAATGCTTCTGGCTG---ATTTGAA-
droWil2 scf2_1100000004919:10114-10365 - ACAGACGGACAGACGGTCAGACGGACAGACGGACATGGCTATATCGACTTAGCTTCTCATGCTGATCAAGAAT-------ATATATACTTTATGGGGTC-GGAAACGTCTCCTTCTGTGCGTTACAAACATCT-GACCAATTTTATAATACCCTCTGCA-----------------------------------------AGGGTATAAAAAGCGTT---------------------------TATC-------TCAA------------AAAACCGCCCCCGCAA---T---------TTAAAAAAAGC-------------------------------------------------------------------------GTTTATCTCAAAAACTATTCTAGCTAGA-----------GA-CC------------------------------------------------------------C-----A----ATATTTG---GTATGTAT
droVir3 scaffold_13050:1988093-1988300 - ACAGACGGACAGACGGTCCGA-----------------CTATATCGACTCGGCTGTTGATGCTGATTAAGAAT-------ATATATACTTTATGGGGTC-GGAGATGTCTCCTTCTATGCGTTACACATTTCA-CGACAAAATTAGAATACCCTCTGCA-----------------------------------------AGGGTATAAAAAGTTCC-----------------------------------------------------------------CTTGGT--------------------------AGGGCTCGAAC----TCGC----------------------------AACTGACCGCATTACTTGC---------------------------------------------------------------------------------------------------------------TGTCGACTCTACTCA---ACA-----
droMoj3 scaffold_6540:25276905-25277159 + ACGGACGGACGGACGGACGGACAGACAGACGGACAGGGCCAAATCGACTTAGCTCGTCGCCCTGATCAAGAAT-------ATATATACTTTGTGGGGTC-TGCCACGCCTCCTTCTGTCTGTTACATACTTTT-A-ACAAAACCATTATACCCTG-----------------------ATTTCCCATTTTCAATGGGTTCAGGGTATAAAAAGGAAA---------------------------AATT-------T-------------------------AA--AACAAACCCAGCACA-A------AT------CGGTTGTGA----TTCG------------------------------------------TTTTCAA---------------------------------------------------------------------------------------------------TTAAACAAACCGAAATATTTCTTCA---G-------
droGri2 scaffold_15252:14913144-14913353 - ATAGACGGA--------------------TGAAAATGGCTATATCTACTCGAATAGTGATGTTGACCAAGAAC-------ATATATACTTTTTGAGTTTAGGAGACGTCCCCTTTAATGCCTAAAATGCTGTGCAATCAAAATTATAATACAATCTGCA-----------------------------------------AGGATATTAAACAAATT---------------------------CAGT-------T-----------------------------------------------------GTACAAATTTCTATAA----TTGA------------------------------------------TTTAAAGTTAAT---TTGAAAAA--------------------------------------------------------------------------------------------TCTGAATTCAAGCT-----------AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACAGACGGACAGACGGACAGACGGACAGACGGACATGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAAT-------ATATATACTTTATAGGGTC-GGAGATGTCTCCTTCACAGCGTTGCACACTTTT-GACCAAAATTATAATACCCTCTGCA-----------------------------------------AGGGTATAAAAAGCAAC---------------------------TATT-------C-------------------------CGTTAATAATTCC-------T-------------------GTAC----------------------------AT------------------CGCCTGCAGCTGATTACCTCAA------------------------------------------------------AA----------------------------TCCTAAACGAGCTGACGACTTTGTTCG---GCATGAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................TGTCTCCTTCACAGCGTTGCACACT...................................................................................................................................................................................................................................................................................................................................................................................................25200.60121101000
..................................................................................ATATACTTTATAGGGTC-GGAGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................24200.55111100000
......................................TCATATCGACTCAGGAGGTGATCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.357000007
.................................................................................................TC-GGAGATGTCTCCTTCACAGCGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................26200.204310000
..........................................................................................................GTCTCCTTCACAGCGTTGCACACTTT.................................................................................................................................................................................................................................................................................................................................................................................................26200.204310000
....................ACGGACAGACGGACATGCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.204000004
................................................................................................................................CTTTT-GACCAAAATTATAATACCCTC..........................................................................................................................................................................................................................................................................................................................................................................26200.153030000
..................................ATGCTCATATCGACTCAGGAGGTGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153300000
...........................................................................................................TCTCCTTCACAGCGTTGCACAC....................................................................................................................................................................................................................................................................................................................................................................................................22200.153030000
.......................................................................................................GATGTCTCCTTCACAGCGTTGCACA.....................................................................................................................................................................................................................................................................................................................................................................................................25200.153021000
..........................................................................................TATAGGGTC-GGAGATGTCTCCTTC..................................................................................................................................................................................................................................................................................................................................................................................................................24200.153000030
.........................................................................................................TGTCTCCTTCACAGCGTTGCACAC....................................................................................................................................................................................................................................................................................................................................................................................................24200.153030000
..........................................................................................................GTCTCCTTCACAGCGTTGCACA.....................................................................................................................................................................................................................................................................................................................................................................................................22200.102200000
........................................................................................TTTATAGGGTC-GGAGATGTCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................23200.102200000
..................................ATGCTCATATCGACTCAGGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102002000
.................................................................................................TC-GGAGATGTCTCCTTCACAGCGTTGC........................................................................................................................................................................................................................................................................................................................................................................................................27200.102110000
...........................................................................................................TCTCCTTCACAGCGTTGCACACTT..................................................................................................................................................................................................................................................................................................................................................................................................24200.102110000
.............................................................................................................TCCTTCACAGCGTTGCACACTTT.................................................................................................................................................................................................................................................................................................................................................................................................23200.102200000
...........................................................................................................TCTCCTTCACAGCGTTGCACACTTTT-...............................................................................................................................................................................................................................................................................................................................................................................................26200.102020000
..........................................................................................................................................AAAATTATAATACCCTCTGCA-----------------------------------------AGGG.........................................................................................................................................................................................................................................................................................................................25200.102020000
......................................................GGTGATCCTGATCAAGAAT-------AT...................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000020
.....................................................................................................GAGATGTCTCCTTCACAGCGTTGCACA.....................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
..........................................................................................................GTCTCCTTCACAGCGTTGCACAC....................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
................................................................................................................TTCACAGCGTTGCACACTTT.................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
........................................................................................................ATGTCTCCTTCACAGCGTTGCACACT...................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
............................................................................................................CTCCTTCACAGCGTTGCACACT...................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000
...........................................................................................................TCTCCTTCACAGCGTTGCACACTTT.................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
.............................................................................................................TCCTTCACAGCGTTGCACACTTTT-G..............................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
...............................GACATGCTCATATCGACTCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
...........................................................................................................TCTCCTTCACAGCGTTGCACACTTC.................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
..........................................................................................................GTCTCCTTCACAGCGTTGCACACT...................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.........................................................................................................TGTCTCCTTCACAGCGTTGCACA.....................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
..............................................................................................GGGTC-GGAGATGTCTCCTTCACA...............................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
........................................................................................................ATGTCTCCTTCACAGCGTTGC........................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
..................AGACGGACAGACGGACATGCTCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
....................................................................................................................CAGCGTTGCACACTTTT-GACC...........................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
.........................CAGACGGACATGCTCATATCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
...........................................................................................................TCTCCTTCACAGCGTTGCACACT...................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
..........................................................................................................GTCTCCTTCACAGCGTTGCAC......................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
...................................TGCTCATATCGACTCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000
..........................................................................................................GTCTCCTTCACAGCGTTGCACACTTTT-...............................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
.............................................................................................................TCCTTCACAGCGTTGCACACTTTT-GA.............................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.......................................................................................CTTTATAGGGTC-GGAGATGTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
.................................................................TCAAGAAT-------ATATATACTTTATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
......................................................GGTGATCCTGATCAAGAAT-------ATATATAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
...........................................................................................................TCTCCTTCACAGCGTTGCACACTTTG-...............................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.........................................................................................................TGTCTCCTTCACAGCGTTGCACACTTT.................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
droBip1
ACAGACGGACAGACGGACAGACGGACAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAAT-------ATATATACTTTATAGGGTC-GGAGATGTCTCCTTCACTGCGTTGCACACTTTT-GGACAAAATTATAATACCCTCTGCA-----------------------------------------AGGGTATAAAAAATTAAAATCGA-------GGAGACA--------ATT----------------------------------------------------GTTGG----------------------------------------CT----ATAG----------------------CACTGCCAACT---C-------------------------------------------------CAATGTCAAATGT---------------------------TTAAATAATAATAAAAATTTGTTCA---GAATTAATSizeHit CountTotal NormTotal
No Reads
droKik1
ACAGACGGACGGAC--------GGACAGACGGACATGGCTAAATCGACTCGGCTGTTGATACTGATCAAGAAT-------ATATATACTTTATAGGGTC-GGAAAGGTCTCCTTCACTGCGTTGCAAACTTCT-GACTGAAATTATAATACCCT--GCA-----------------------------------------AGGGTATAAAAATAGTC---------------------------TATT-ATGTC-TCA---------------------------AATAGCTCT-------T-------------------ATTT----------------------------AC------------------TGTTCATGGTTAATGAAATCAAAAA------------------------------------------------------------------------------------------------TTATTCTGATCA---GCATGAA-SizeHit CountTotal NormTotal
No Reads
droFic1
ACAGACAGACAGACGGACAGACGGACAGACGTACATACATATTTCGATTCAGATGGTGATGCTGATCAAGAAT-------ATATATACTTTATGGGGTC-TGAGGTGTCTCCTTCACTGCGTTGCAAACTTCT-GACTGAAATTATAATACCCTTT------------------------GC-T------CTGCA-----AGGGTATAATTATTTAG-------------------------A--AAT----------------------------------------------------CTATACATCGTGTTAATCTTTGAAT----TTGC-------------------------------------------TCTTAA-------------------------------------------------------------------AA----------------------------TTATATATTAAATAACAACTCTTTTC------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACGGACGGACAGACGG----ACGGACAGACGGATATGGCTAGATCGACTCGCCTAGTGATGCTGATCAAGAAT-------ATATATACTTTATAGTGTC-GGAGATGTCTTCTTCACTGCGTTGCAAACTTCT-GACTGAAATTATAATACCCTCTGCA-----------------------------------------AGGGTATAAAACCAGAAAACCAACTTTTTGAGAAACA--------CTA----------------------------------------------------G-----------------TTTGAAT----TTGC------------CTATTC--AG------------------CACGTTTTTCTAC-------------------------------------CTT-TCTT-CA--------------AAC----------------------------TCGGAAAAAGGATTCCAACTTTGTTCA---GC------SizeHit CountTotal NormTotal
No Reads
droRho1
ACAGACGGACAGACGGACAGACGGACAGACGGACATGGCTATATCAACTCAGGAGGTGATCCTGATCAAGAAT-------ATATATACTTTATAGGGTC-GGAGATGTCTCCTTCACTGCGTTGCACACTTTT-GACCAAAATTATAATACCCTCTGCA-----------------------------------------AGGGTATAAAAATAGGA-------TT------------TGG-A--A--------------------------------------------A---------------------------------------------------------------------------------------------GAT-------------------------TCATGTCAA-----TAGCTTGTATACTGC-------------GTGAAATATCCTAAAAATCATTAAATTTTAACCGATTTTACCCTTTTGTTC------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACAGACAGAC----GGTCAGACGGACATACGAACATGGCTAGATCGACTCGTCTAGTGACGCTGCTCAAGAAT-------ATATATTCTTTATGGGGTC-GGAAACGTCTCCTTCACTGCGTTGCAAGCTTCT-GACTGAAATTATTATACCCCCTGCA-----------------------------------------AGGGTATAAAAATGATA---------------------------TGAT-------C--------------------------------------------CTTTTTAACATGTACACCCTT---------------------------------------------------------GCAGCT----------------------------AC------------------AA-------------AAAA----------------------------TAATCAAC--GCTAGTAACACCGTGTG---ATATTATTSizeHit CountTotal NormTotal
No Reads
droTak1
ACAGACGGACAGACGGACAGACGGACAGACGGACATGGCTAGATCGACTCGTCTTGTGATGCTGATCAAGAAT-------ATATATACTTTATGGGGTC-GGAAACGTCTCCTTCACTGCGTTGCAAACTTCT-GACTGAAATCATAATACCCTCTGCA-----------------------------------------AGGGTATAAATATTTTT---------------------------TATG-CTCTCCCTA--------------------------------CCCA-------T---------------TTCCAT--------------------------------------------------CATCTCAACTTGACCATTTCAA----TATCCTGGCTGAA-----------GT------------------------------------------------------------------------CCGTACTCA---GCTTAACTSizeHit CountTotal NormTotal
No Reads
droEug1
ACGGACGGACGGACGGATGGACCGACAGACGGACATGGCTCAATCGACTTCGCTATTGATCCTGATCAAGAAT-------ATATATACTTTATAGGGTC-GGAAACGA--CCTTCTATCTGTTACATACTTTT-CAACGAATCTAGTATACCCTT-----------------------TTAC-T------CTACTAGTAACGGGTATAATAAATAAT---------------------------GATA-------A-------------------------AAAGCATATTTCA-------A-------------------ACAC----------------------------AT------------------CAACCTTGGAAGCT-------------------------TCCTGCTAAGT-----------------------------CTGC---GAAGC--------------------------TTGACGTTTTTGCTCT---ATATG---SizeHit CountTotal NormTotal
No Reads
dm3
-----------GACGTCCATGCGGACAGACGGATATGGCTAGATCGACTCGGCTATTGATCCTGATCAAGAAT-------ATATATACTCTATGTAACC-GAAAACGCTTGCTTCTGCCACTTACATACTTTG-CAACGAATCTAGTATACTCTT-----------------------TTAC-T------CTACGAGTAACGGGAATAAATATAATA----------------------------ATT----------------------------------------------------TTTTACAACATAGAAATTGTT------------------------------------------------------------------------------------------------------------------------CGACATCAAA----------------------------TCTTAAATATAATTAAGGCCTTGTCCG-----------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................TCCTGATCAAGAAT-------ATATATACTCTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................26523.8011900000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000002000000100420000000000000000000000000000000000002000000000000000000000000000230130208420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TCCTGATCAAGAAT-------ATATATACTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................24515.00750000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120101100130003100000000000000000000000000000000001001000000000000000000000000013082120190000000000000000000000000000000000000000000000000000000000000000001000000000200000000000000000001000000
............................................................................................TGTAACC-GAAAACGCTTGCTTCTGCCAC............................................................................................................................................................................................................................................................................................................................................................................................................2819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCCATGCGGACAGACGGATATGGCTAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TACTCTATGTAACC-GAAAACGCTTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCCATGCGGACAGACGGATATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TGCCACTTACATACTTTG-CAACGAA........................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TGCCACTTACATACTTTG-CAACGAATC......................................................................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCCATGCGGACAGACGGATATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................TATTGATCCTGATCAAGAAT-------ATATA................................................................................................................................................................................................................................................................................................................................................................................................................................................25204.8096000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004500000510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GACGTCCATGCGGACAGACGGATATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................TAACGGGAATAAATATAATA----------------------------ATT----------------------------------------------------TTT......................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TCCTGATCAAGAAT-------ATATATACTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2554.00200000000000000000000000000000000000000010100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000050312120000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................TACTCTATGTAACC-GAAAACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TTG-CAACGAATCTAGTATACTCTT-----------------------TTAC-..............................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CATGCGGACAGACGGATATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................TTG-CAACGAATCTAGTATACT.............................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
......................................................................................................................CACTTACATACTTTG-CAACGAATCTAG...................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TCTGCCACTTACATACTTTG-CAACGAA........................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TCCTGATCAAGAAT-------ATATATACTCTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................2742.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000020000000000000000000000000000000000000000000000000000000000000000030000130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TTG-CAACGAATCTAGTATACTCTT-----------------------TT.................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TGCGGACAGACGGATATGGCTAGATCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
...................TGCGGACAGACGGATATGGCTAGATCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TTTG-CAACGAATCTAGTATACTCTT-----------------------T..................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TGTAACC-GAAAACGCTTGCTTCT.................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TGTT------------------------------------------------------------------------------------------------------------------------CGACATCAAA----------------------------TCTTAAATATAAT.........................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GACAGACGGATATGGCTAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2122.0040000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TTTG-CAACGAATCTAGTATACT.............................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TACTTTG-CAACGAATCTAGTATACTCT...........................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TACTCTATGTAACC-GAAAACGCTTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TTAC-T------CTACGAGTAACGGGAATAAA...................................................................................................................................................................................................................................................................................................................2522.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.......................................................................................................AACGCTTGCTTCTGCCACTTACATACT...................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TACTCTATGTAACC-GAAAACGCTTGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................TT-----------------------TTAC-T------CTACGAGTAACGGGAATA.....................................................................................................................................................................................................................................................................................................................2521.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.........................................................................................................................TTACATACTTTG-CAACGAATCTAG...................................................................................................................................................................................................................................................................................................................................................................................2421.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TCCTGATCAAGAAT-------ATATATACTCTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2821.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TG-CAACGAATCTAGTATACTCT...........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TTG-CAACGAATCTAGTATACTCT...........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CTCTT-----------------------TTAC-T------CTACGAGTAACGGGAA.......................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ATTGTT------------------------------------------------------------------------------------------------------------------------CGACATCAAA----------------------------TCTTAAATA.............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TACTCTATGTAACC-GAAAACGCTTGCTTC..................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
ACGGACGGAAAGACAG--------ACGGACTGACATGGCTAGATCGACTCGGCTATTGATCTAGATCAAGAAT-------ATGTATACTTCAAGGG--T-GGAATCTATTTCTTATACCTGTTACATACTTTT-CTACGAATCTAGTATATTAAC-----------------------TTCC-T------ATACGAGTTACGGGTATAAAAATGTGG--------------A-----TTGC----------------A---------------------------A----A----------T-------------------GT----------------------CT-----CATTCACTT------------TGTTTGCAAAGTA-------------------------------------------------------CGACGACAA-----------AG------------------TT--------AGACGATTTTTTTTGGTTTTATGGACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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.........................CGGACTGACATGGCTAGATCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
.........................CGGACTGACATGGCTAGATCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................TTGCAAAGTA-------------------------------------------------------CGACGACAA-----------AG------------------TT--------AGA.......................2611.00100000010000000000
......................................................................................................................................................................................................TACGGGTATAAAAATGTGG--------------A-----TTGC----------------A---------------------------A----...................................................................................................................................................................................................................................2611.00100000000000010000
...........................................TCGACTCGGCTATTGATCTAGATCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
...........................................TCGACTCGGCTATTGATCTAGATCAAGAAT-------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
...........................................TCGACTCGGCTATTGATCTAGATCAAGAAA-------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
......................................CTAGATCGACTCGGCTATTGATCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
................................................................................................................................................................................................................AAAATGTGG--------------A-----TTGC----------------A---------------------------A----A----------........................................................................................................................................................................................................................1711.00100000000001000000
...........................................TCGACTCGGCTATTGATCTAGATCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
..........................GGACTGACATGGCTAGATCGACTCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
...........................................TCGACTCGGCTATTGATCTAGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
.....................................................................GAAT-------ATGTATACTTCAAGGG--T-GGAAT............................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.............CAG--------ACGGACTGACATGGCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
........................................................TGATCTAGATCAAGAAT-------ATGTATACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.............CAG--------ACGGACTGACATGGCTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................TA-------------------------------------------------------CGACGACAA-----------AG------------------TT--------AGACGATTTTTT..............2711.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGTA-------------------------------------------------------CGACGACAA-----------AG------------------TT--------AGA.......................2511.00100000010000000000
..............................TGACATGGCTAGATCGACTCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.86600000042000000000
...........................................TCGACTCGGCTATTGATCTAGATCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000001000000000
...................................TGGCTAGATCGACTCGGCTATTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.5010000000000010000000
......................................CTAGATCGACTCGGCTATTGATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000010000000000
..............................TGACATGGCTAGATCGACTCGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.43300000030000000000
................................................TCGGCTATTGATCTAGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.33100000000010000000
.........................................GATCGACTCGGCTATTGATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.29200000000002000000
..........................................................................................................................TACATACTTTT-CTACGAATCT.....................................................................................................................................................................................................................................................................................................................................................................................2140.25100010000000000000
............................ACTGACATGGCTAGATCGACTCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.25100000001000000000
...........................GACTGACATGGCTAGATCGACTCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.25100000000000001000
.............................CTGACATGGCTAGATCGACTCGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.25100000001000000000
...........................GACTGACATGGCTAGATCGACTCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.25100000000000010000
...........................GACTGACATGGCTAGATCGACTCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.17100000001000000000
...........................GACTGACATGGCTAGATCGACTCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.17100000010000000000
...................................TGGCTAGATCGACTCGGCTATTGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.15300000010020000000
..............................TGACATGGCTAGATCGACTCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2490.11100000010000000000
................................................................................................................................................................................................ACGAGTTACGGGTATA.....................................................................................................................................................................................................................................................................................................................16100.10100000000001000000
..............................TGACATGGCTAGATCGACTCGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.09100000010000000000
...............................................CTCGGCTATTGATCTAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.09100000000010000000
..............................TGACATGGCTAGATCGACTCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23130.08100000010000000000
..............................TGACATGGCTAGATCGACTCGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.06100000000000010000
...............................GACATGGCTAGATCGACTCGGCTATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000000000010000
...............................GACATGGCTAGATCGACTCGGCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000001000000
....................................GGCTAGATCGACTCGGCTATTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000001000000000
.....................................GCTAGATCGACTCGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
...................................TGGCTAGATCGACTCGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000100000000
........................................AGATCGACTCGGCTATTGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000001000
......................................CTAGATCGACTCGGCTATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000000001000
.........................................GATCGACTCGGCTATTGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000000010000
droSec2
ACGTACG------------------------GACATTGCCAGATCGACTGGGCTGGTGATCCTAATCAAGAAT-------ATAAATACTTTATATGATA-GGAAACGATTTTCTTTTTCAAT----AACTTTT-GT------TTAAAATATCCTTTAAA-----------------------------------------ATACTTTAAATTTGAAG---------------------------TAGTACTCACTTTATCATTTTT-----------------------------------A-------------------ATACACGGTGTAAACCACATCTTCATAAAAACTTC---------------------------------------------------------CGTAACAAGT-----------------------------TT---------------------------TTGA---------ATGCCTTCTTCG---TCATGAA-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ACAGACGGACAGACAGACGGACGGACAGACGGACATGGCCAAATCGATTCGGCTATTGATCCTGATCAAGAAT-------ATATATACTTTATATGGTC-GGAAACGCTTCCTTCTGCCTGTTACATACTTTT-CAACGAATCTAGTATACCCTT-----------------------TTAC-T------CTACGAGTAACGGGTATAACAATTGCG----------------------------A-----------------------------------------------------------------------------------TGCAACTCAAGTCTGCCTGGGGACTTCCCCTT------------TGGCTGCA------------------------------------------GT--GCCTCGT---------------AA----------------------------ATCGAATGAAGCACACGACTTCGT--------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................ATTGATCCTGATCAAGAAT-------ATATA................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000000000
..............................................................................................................................................................................................CTACGAGTAACGGGTATAACAATT...............................................................................................................................................................................................................................................................................................................24110.09100000010000
...........................................TCGATTCGGCTATTGATCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05110000000000
.........CAGACAGACGGACGGACAGACGGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100100000000
.............................................................................................................................................TCTAGTATACCCTT-----------------------TTAC-T------.......................................................................................................................................................................................................................................................................................................................................19200.05101000000000
droEre2
ACGGACGGACAGACAGACGGACGGACAGACGGACATGGCCAGATCGACTCGGATATTGATCCCGATCAAGAAT-------ATATATACTTTATATGATC-GGAAAAGCTTTCTCCTGCGTGTTACATACTTTT-CAACGAATCTAATATACCCTTTACT-------------------------------CGGTGAGTATCGAGTATTACAATTTAA--------------A-----TAAC----------------A---------------------------A----T----------T-------------------AC----------------------CT------TT--TCTT------------CAATTGCTACCGATT---------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................ACGGACGGACAGACGGACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
dp5
ACAGACGGACGGACGG--------ACAGGCAGACAGGGCTCAATCGACTCAGCTATTGATGCTGATCAAGATCAAAGTATATATATACTTTATGGGGTC-GGAAACAGTTCCTTCTGGACGTTACACACATCC-AC----TTTTA------------CCACAAATCGAATATACCCCAATAC-TTA----TTTTGAGTATCGGGTATAAAAATAACA-------TTTTTGATGATCA--------A--------------------------------------------TCGA-------T---------------ATCTAT-------------------------------------------------------------------------------CGTTGCTGAT-----------GG-TCGCGTCTTTACTTC-------------GC---GCCGCCTGACAA-----------------------TTATTTTGTTCG---GTAAGGAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGAT-----------GG-TCGCGTCTTTACTTC-------------GC---..........................................................2663.001801300103100
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGAT-----------GG-TCGCGTCTTTACTTC-------------G..............................................................2560.6740400000000
................................................................................................................................................................................................TTGAGTATCGGGTATAAAAATA...............................................................................................................................................................................................................................................................................................................22200.551101000001000
..............................................................................................................................................TTA------------CCACAAATCGAATATACCCCAATAC-..............................................................................................................................................................................................................................................................................................................................................2860.5030300000000
..............................................................................................................................................TTA------------CCACAAATCGAATATACCCCAAT.................................................................................................................................................................................................................................................................................................................................................2660.5030210000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGAT-----------GG-TCGCGTCTTTACTTC-------------...............................................................2470.4330300000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTGAT-----------GG-TCGCGTCTTTACTTC-------------GC---..........................................................2460.3320100001000
....ACGGACGGACGG--------ACAGGCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000010
.....CGGACGGACGG--------ACAGGCAGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010000000010
.......................................................................................................................................................................................TTA----TTTTGAGTATCGGGTATAAAAA.................................................................................................................................................................................................................................................................................................................25200.2040100000210
..............................................................................................................................................TTA------------CCACAAATCGAATATACCCCAATA................................................................................................................................................................................................................................................................................................................................................2760.1710010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAT-----------GG-TCGCGTCTTTACTTC-------------GC---..........................................................2560.1710100000000
........................................................................................................................................................................................TA----TTTTGAGTATCGGGTATAAAAA.................................................................................................................................................................................................................................................................................................................24200.1530100000110
................................................................................................................................................................................................TTGAGTATCGGGTATAAAA..................................................................................................................................................................................................................................................................................................................19200.1530300000000
..............................................................................................................................................................................................................................................................................................................................TCTAT-------------------------------------------------------------------------------CGTTGCTGAT-----------GG-TCGCGTCT...................................................................................2570.1410100000000
..............................................................................................................................................TTA------------CCACAAATCGAATATACCCCAA..................................................................................................................................................................................................................................................................................................................................................2570.1410100000000
...............................................................................................................................................TA------------CCACAAATCGAATATACCCCA...................................................................................................................................................................................................................................................................................................................................................2370.1410100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGAT-----------GG-TCGCGTCTTTACTT.............................................................................2370.1410100000000
..............................................................................................................................................TTA------------CCACAAATCGAATATACCCCA...................................................................................................................................................................................................................................................................................................................................................2470.1410100000000
..............................................................................................................................................TTA------------CCACAAATCGAATATACCCC....................................................................................................................................................................................................................................................................................................................................................2380.1310010000000
...................................................................................................................................................................................................................................................................................................CGA-------T---------------ATCTAT-------------------------------------------------------------------------------CGTTGCTGAT-----------GG-...........................................................................................2290.1110100000000
..............................................................................................................................................TTA------------CCACAAATCGAATATACCC.....................................................................................................................................................................................................................................................................................................................................................2290.1110100000000
...................................................................................TATACTTTATGGGGTC-GGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000200
..............................................................................................................CCTTCTGGACGTTACACACA...................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000002000
.......................................................................................................................................................................................TTA----TTTTGAGTATCGGGTATA.....................................................................................................................................................................................................................................................................................................................21200.1020000002000
...........................................................................................................................................................................TACCCCAATAC-TTA----TTTTGAGTA..............................................................................................................................................................................................................................................................................................................................23170.0610100000000
..............................................................................................................................................TTA------------CCACAAATCGAATATACCA.....................................................................................................................................................................................................................................................................................................................................................22170.0610100000000
..................................................................................ATATACTTTATGGGGTC-GGAAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................24180.0610100000000
................................................................................................................................................................................................TTGAGTATCGGGTATAAAAATAACA-------A....................................................................................................................................................................................................................................................................................................26200.0510100000000
........................................................................................................................................................................................TA----TTTTGAGTATCGGGTATAAA...................................................................................................................................................................................................................................................................................................................22200.0510100000000
...................................................................................................................TGGACGTTACACACATCC-AC----T........................................................................................................................................................................................................................................................................................................................................................................................21200.0510010000000
.................................................................................................................................................................................................TGAGTATCGGGTATAAAAATAA..............................................................................................................................................................................................................................................................................................................22200.0510100000000
droPer2
ACGGACGGACGGACGGACGGACGAACGGACAGACATGGGTCTATCGACTCGGCTATTGATGCTGATCAAGAAT---ATACATATATACTTTATGGGGTC-GGAAAGTCTTTCTTCTGGACGTTACACA-----------AATCCAATATACCCCT-----------------------ATAC---------------------------AAATTGGA--------------------ATGCGCTTATT-------CCAATGTTTTTAATGGCATATCGCTCCGGAAAACATGTT-------A-------------------GAAC----------------------AGCGACCACGC---CGGCG----------------------ACAGCAA------------------------------------------------------TA----------------------------TTTTAAACGATTTAATGCTTCTGGCTG---ATTTGAA-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................ATACTTTATGGGGTC-GGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................20200.153030000
...........................................................TGCTGATCAAGAAT---ATACATATATACT............................................................................................................................................................................................................................................................................................................................................................................................................................................27180.061010000
...........................................................TGCTGATCAAGAAT---ATACATATATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................25190.051010000
droWil2
ACAGACGGACAGACGGTCAGACGGACAGACGGACATGGCTATATCGACTTAGCTTCTCATGCTGATCAAGAAT-------ATATATACTTTATGGGGTC-GGAAACGTCTCCTTCTGTGCGTTACAAACATCT-GACCAATTTTATAATACCCTCTGCA-----------------------------------------AGGGTATAAAAAGCGTT---------------------------TATC-------TCAA------------AAAACCGCCCCCGCAA---T---------TTAAAAAAAGC-------------------------------------------------------------------------GTTTATCTCAAAAACTATTCTAGCTAGA-----------GA-CC------------------------------------------------------------C-----A----ATATTTG---GTATGTATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................AAAAAGCGTT---------------------------TATC-------TCAA------------AAAA..................................................................................................................................................................................................................................................2230.33100010
...................................................................................................................................................................................................................................................................................................................................................................................................TATCTCAAAAACTATTCTAGCTAGA-----------..............................................................................................25200.05100010
............................ACGGACATGGCTATATCGACTTAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
.................................................................................................................TCTGTGCGTTACAAACATCT-G..............................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.......................................TATATCGACTTAGCTTCTCATGCTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
.................................................................................................................................ATCT-GACCAATTTTATAATACCCTCTG........................................................................................................................................................................................................................................................................................................................................................................27200.05101000
..............................................................................................................................................................................................................................................................................................................AAAAAAAGC-------------------------------------------------------------------------GTTTATCTCAAAAAC......................................................................................................................24200.05101000
droVir3
ACAGACGGACAGACGGTCCGA-----------------CTATATCGACTCGGCTGTTGATGCTGATTAAGAAT-------ATATATACTTTATGGGGTC-GGAGATGTCTCCTTCTATGCGTTACACATTTCA-CGACAAAATTAGAATACCCTCTGCA-----------------------------------------AGGGTATAAAAAGTTCC-----------------------------------------------------------------CTTGGT--------------------------AGGGCTCGAAC----TCGC----------------------------AACTGACCGCATTACTTGC---------------------------------------------------------------------------------------------------------------TGTCGACTCTACTCA---ACA-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................CTCGAAC----TCGC----------------------------AACTGACCGCATTAC.............................................................................................................................................26201.45290001000100000000000000000000155000100005000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................CTCGAAC----TCGC----------------------------AACTGACCGCATTACT............................................................................................................................................27200.85170020000000000000000010000000100200020000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCGC----------------------------AACTGACCGCATTACTTGC---------------------------------------------------------------------------------------------------------------T.........................24200.75150000000000000000000000000000110040000000000000000000000000000000
.........................................................................................................................TTACACATTTCA-CGACAAAATTAGAA.................................................................................................................................................................................................................................................................................................................................................................................2630.672000000000000000000000000010001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CTCGAAC----TCGC----------------------------AACTGACCGCATT...............................................................................................................................................24200.6513300000000000000000000000000042110000100100000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CTCGAAC----TCGC----------------------------AACTGACCGCATTA..............................................................................................................................................25200.55110010000000000000000000000000100000000000000000000000000000000000
..................................................................TAAGAAT-------ATATATACTTTATGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................23200.459000000000000000000000000100008000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCGC----------------------------AACTGACCGCATTACTTGC---------------------------------------------------------------------------------------------------------------TGTCG.....................28200.255000003000000000000000000000000000000000200000000000000000000000
...................GA-----------------CTATATCGACTCGGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.222000000000000000000000002000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CTCGAAC----TCGC----------------------------AACTGACCGC..................................................................................................................................................21200.204000001000000000000000000000000000300000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CTCGAAC----TCGC----------------------------AACTGACCGCAT................................................................................................................................................23200.204000001000000000000000000000012000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................CGC----------------------------AACTGACCGCATTACTTGC---------------------------------------------------------------------------------------------------------------TGTCG.....................27200.153000000000000000000000000001020000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CTCGAAC----TCGC----------------------------AACTGACCGCATTACTT...........................................................................................................................................28200.153001000000000000000000000000200000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCGC----------------------------AACTGACCGCATTACTTGC---------------------------------------------------------------------------------------------------------------TGTC......................27200.102000000000000000000000000100000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCGC----------------------------AACTGACCGCATTACTTG..........................................................................................................................................22200.102000000000000000000000000000002000000000000000000000000000000000
......................................................................................ACTTTATGGGGTC-GGAGATGTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000000000200000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CTCGAAC----TCGC----------------------------AACTGACCGCATTACC............................................................................................................................................27200.102000000000000000000000000000000200000000000000000000000000000000
..................................................................................................................................................AATACCCTCTGCA-----------------------------------------AGGGTATAAAAAGT...............................................................................................................................................................................................................................................................................................................27170.061000000000000000000000000000000000000000000000000000000000000001
.....................................................................................TACTTTATGGGGTC-GGAGATGTCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000000100000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ACCGCATTACTTGC---------------------------------------------------------------------------------------------------------------TGTCGACTCTAC..............26200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................TGATTAAGAAT-------ATATATACTTTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000010000000000000000000000000000000000000
.....................................................TGTTGATGCTGATTAAGAAT-------ATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GAAC----TCGC----------------------------AACTGACCGCATTACT............................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................CGC----------------------------AACTGACCGCATTACTTG..........................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
........................................................................T-------ATATATACTTTATGGGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AGGGCTCGAAC----TCGC----------------------------AACTGACCGC..................................................................................................................................................25200.051000000000000000000001000000000000000000000000000000000000000000
.......................................................TTGATGCTGATTAAGAAT-------ATATAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GAAC----TCGC----------------------------AACTGACCGCATTA..............................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CTCGAAC----TCGC----------------------------AACTGACCGCATTACTTG..........................................................................................................................................29200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CGAAC----TCGC----------------------------AACTGACCGCATTACTTGC---------------------------------------------------------------------------------------------------------------..........................28200.051000000000000000000000000000001000000000000000000000000000000000
...........................................................TGCTGATTAAGAAT-------ATATATACTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CTCGAAC----TCGC----------------------------AACTGACCGCATTACTC...........................................................................................................................................28200.051000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CTCGAAC----TCGC----------------------------AACTGACCGCATTATC............................................................................................................................................27200.051000000000000000000001000000000000000000000000000000000000000000
........................................................................T-------ATATATACTTTATGGGGTC-GGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................AACTGACCGCATTACTTGC---------------------------------------------------------------------------------------------------------------T.........................20200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................ATGCGTTACACATTTCA-CGACAAAAT......................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GAAC----TCGC----------------------------AACTGACCGCATTACTTG..........................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................C----TCGC----------------------------AACTGACCGCATTACTTGC---------------------------------------------------------------------------------------------------------------TGTC......................28200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................................TACTTTATGGGGTC-GGAGATGT.........................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
.................................................................TTAAGAAT-------ATATATACTTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CTCGAAC----TCGC----------------------------AACTGACCGCATG...............................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................AACTGACCGCATTACTTGC---------------------------------------------------------------------------------------------------------------TGTC......................23200.051000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GCTCGAAC----TCGC----------------------------AACTGACCGCATTACT............................................................................................................................................28200.051000000000000000000000000000010000000000000000000000000000000000
....................................................CTGTTGATGCTGATTAAGAAT-------ATATA................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CTCGAAC----TCGC----------------------------AACTGACCGCA.................................................................................................................................................22200.051000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GGGCTCGAAC----TCGC----------------------------AACTGACCGCA.................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................TATGGGGTC-GGAGATGTCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CGAAC----TCGC----------------------------AACTGACCGCATTAC.............................................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
ACGGACGGACGGACGGACGGACAGACAGACGGACAGGGCCAAATCGACTTAGCTCGTCGCCCTGATCAAGAAT-------ATATATACTTTGTGGGGTC-TGCCACGCCTCCTTCTGTCTGTTACATACTTTT-A-ACAAAACCATTATACCCTG-----------------------ATTTCCCATTTTCAATGGGTTCAGGGTATAAAAAGGAAA---------------------------AATT-------T-------------------------AA--AACAAACCCAGCACA-A------AT------CGGTTGTGA----TTCG------------------------------------------TTTTCAA---------------------------------------------------------------------------------------------------TTAAACAAACCGAAATATTTCTTCA---G-------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................TTTGTGGGGTC-TGCCACGCCTCCTTCT.................................................................................................................................................................................................................................................................................................................................................................................................................27200.255000050
.....................................................TCGTCGCCCTGATCAAGAAT-------ATATATAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................28200.204400000
..........................................ATCGACTTAGCTCGTCGCCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153300000
...........................................TCGACTTAGCTCGTCGCCCTGATCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
.......................................CAAATCGACTTAGCTCGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
........................................................................T-------ATATATACTTTGTGGGGTC-.................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
..........................................ATCGACTTAGCTCGTCGCCCTGATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
................................................TTAGCTCGTCGCCCTGATCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.......................................................................................................................................................................................CCATTTTCAATGGGTTCAGGGT........................................................................................................................................................................................................................................................................................................................22200.051000010
...........GACGGACGGACAGACAGACGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100
............................................................................................................................................................................................TTCAATGGGTTCAGGGTATAAAAAGG...............................................................................................................................................................................................................................................................................................................26200.051100000
........................................................................................................................................................................................CATTTTCAATGGGTTCAGG..........................................................................................................................................................................................................................................................................................................................19200.051100000
..........................................................................................................................TACATACTTTT-A-ACAAAACCATTATACC.............................................................................................................................................................................................................................................................................................................................................................................28200.051100000
...................................................................................TATACTTTGTGGGGTC-TGCCACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
............................................................................................................CTCCTTCTGTCTGTTACATACT...................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.....................................................................................TACTTTGTGGGGTC-TGCCACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000100
............................................................................................TGGGGTC-TGCCACGCCTCCTTCTGTC..............................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
............ACGGACGGACAGACAGACGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droGri2
ATAGACGGA--------------------TGAAAATGGCTATATCTACTCGAATAGTGATGTTGACCAAGAAC-------ATATATACTTTTTGAGTTTAGGAGACGTCCCCTTTAATGCCTAAAATGCTGTGCAATCAAAATTATAATACAATCTGCA-----------------------------------------AGGATATTAAACAAATT---------------------------CAGT-------T-----------------------------------------------------GTACAAATTTCTATAA----TTGA------------------------------------------TTTAAAGTTAAT---TTGAAAAA--------------------------------------------------------------------------------------------TCTGAATTCAAGCT-----------AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:21 AM