dan_303

Name	Class	Family	Strand
Jockey-1_DYa	LINE	Jockey	-

CGGCTATAAAACGATCCCCAAGTGAATTGTAGAAGTCCATAAATTGTCCTTCCGAGATTGAGAAAAGAGGAGAGCAACAAACGGCAGCGATTGAAAGGCTTCCGTTTCTTGACTGAATTTGTATCGATCTGGCCTGCAAGAAGTTTGATTCAAACCTTTTGTGAAAATGGTGTTTTAAACGTTCT ************************************.....((((....((.(((((((....(((....(((((.((((((.(((.........))).)))))).))).))...)))...)))))))))...))))..........**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V055 head	V039 embryo	V106 head	V105 male body
.............................................................................................................TGACTGAATTTGTATCGATCTGGCC...................................................	25	0	3	2.00	6	6	0	0	0	0	0
.............................................................................................................TGACTGAATTTGTATCGATCTGGCCT..................................................	26	0	3	0.67	2	2	0	0	0	0	0
......................................................................................................................TTGTATCGATCTGGCCTGCAAGAAG..........................................	25	0	3	0.33	1	0	1	0	0	0	0
.....................................................GAGATTGAGAAAAGAGGAGAGCAACA..........................................................................................................	26	0	3	0.33	1	0	1	0	0	0	0
..........................................................................................................TCTTGACTGAATTTGTATCGATCTGGCC...................................................	28	0	3	0.33	1	1	0	0	0	0	0
........................AATTGTAGAAGTCCATAAATTGTCCT.......................................................................................................................................	26	0	20	0.25	5	1	4	0	0	0	0
.................................................................................................................TGAATTTGTACCGATCGGGC....................................................	20	2	4	0.25	1	0	0	1	0	0	0
.............................................................................................................TGACTGAATTTGTATCGATCTGGCCC..................................................	26	1	4	0.25	1	1	0	0	0	0	0
............................................................................................................TTGACTGAATTTGTATCCATCTTTC....................................................	25	3	5	0.20	1	0	0	0	1	0	0
......................TGAATTGTAGAAGTCCATAAATTGTCC........................................................................................................................................	27	0	20	0.20	4	4	0	0	0	0	0
.............................................................................................................................GATCTGGCCTGCAAGAAGA.........................................	19	1	6	0.17	1	1	0	0	0	0	0
..........................TTGTAGAAGTCCATAAATTGTCCTT......................................................................................................................................	25	0	20	0.15	3	1	2	0	0	0	0
..................................................TCCGAGATTGAGAAAAGAGGAGA................................................................................................................	23	0	10	0.10	1	1	0	0	0	0	0
..................................................TCCGAGATTGAGAAAAGAGGAGAGC..............................................................................................................	25	0	10	0.10	1	1	0	0	0	0	0
...........................................................................................TGAAAGGCTTCCGTTTCTTGACTGAA....................................................................	26	0	20	0.10	2	0	2	0	0	0	0
...........................TGTAGAAGTCCATAAATTGTCCTT......................................................................................................................................	24	0	20	0.10	2	0	0	0	0	2	0
.............................................................................CAAACGGCAGCGATTGAAAGGCTTC...................................................................................	25	0	11	0.09	1	1	0	0	0	0	0
.........................................................................................................................................AAGAAGTTTGATTTAAACC.............................	19	1	11	0.09	1	1	0	0	0	0	0
.............................................................GAAGAGAGGAGAGTAACACA........................................................................................................	20	3	14	0.07	1	0	0	0	1	0	0
.............................................................................................................TGACAGAATTTTTATCGCTCT.......................................................	21	3	19	0.05	1	0	0	1	0	0	0
...............CCCCAAGTGAATTGTAGAAGTCCATA................................................................................................................................................	26	0	20	0.05	1	1	0	0	0	0	0
.........................................AATTGTCCTTCCGAGATTGAGA..........................................................................................................................	22	0	20	0.05	1	0	1	0	0	0	0
...........................................................AAGAAAAGAGTAGAGCACCA..........................................................................................................	20	3	20	0.05	1	1	0	0	0	0	0
....................................CCATAAATTGTCCTTCCGAGA................................................................................................................................	21	0	20	0.05	1	0	1	0	0	0	0
.................................................................................................GCTTCCGTTTCTTGACTGAATTTGTATC............................................................	28	0	20	0.05	1	0	1	0	0	0	0
.............................................................AAAAAGAGGCGAGCACCAAA........................................................................................................	20	3	20	0.05	1	1	0	0	0	0	0
.....................................................................................AGCGATTGAAAGGCTTCCGT................................................................................	20	0	20	0.05	1	0	1	0	0	0	0
..........................................................................................TTGAAAGGCTTCCGTTTCTTGACTG......................................................................	25	0	20	0.05	1	0	1	0	0	0	0
......................TTAATTGTAGAAGTCCATAAATTGT..........................................................................................................................................	25	1	20	0.05	1	1	0	0	0	0	0
........AAACGATCCCCAAGTGAATTGTAGA........................................................................................................................................................	25	0	20	0.05	1	0	1	0	0	0	0
.............................TAGAAGTCGATAAATTGTCCTTCCGA..................................................................................................................................	26	1	20	0.05	1	0	1	0	0	0	0
..........................TTGTAGAAGTCCATAAATTGTCCTTC.....................................................................................................................................	26	0	20	0.05	1	1	0	0	0	0	0
............................................................................................GAAAGGCTTCCGTTTCTTGACTGAATT..................................................................	27	0	20	0.05	1	0	1	0	0	0	0
..................CAAGTGAATTGTAGAAGTCCA..................................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	1
.................................................................................................GCTTCCGTTTCTTGACTGAATTTG................................................................	24	0	20	0.05	1	0	1	0	0	0	0

GCCGATATTTTGCTAGGGGTTCACTTAACATCTTCAGGTATTTAACAGGAAGGCTCTAACTCTTTTCTCCTCTCGTTGTTTGCCGTCGCTAACTTTCCGAAGGCAAAGAACTGACTTAAACATAGCTAGACCGGACGTTCTTCAAACTAAGTTTGGAAAACACTTTTACCACAAAATTTGCAAGA **********************************.....((((....((.(((((((....(((....(((((.((((((.(((.........))).)))))).))).))...)))...)))))))))...))))..........************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V055 head	V039 embryo	V106 head
..................................................................CTCCTCTCGTTGTTTGCCGTCGCT...............................................................................................	24	0	3	0.33	1	1	0	0	0	0
.......................................................................CTCGTTGTTTGCCGTCGCTAACTTTCCG......................................................................................	28	0	3	0.33	1	1	0	0	0	0
..............................................................................................TTCCGAAGGCAAAGAACTGACTTAA..................................................................	25	0	20	0.25	5	5	0	0	0	0
....................................................................CCTCTCGTGGTGTGCCGTCGAT...............................................................................................	22	3	10	0.10	1	0	0	1	0	0
.............TAGGGGTTCACTTAACATCTTCAGGT..................................................................................................................................................	26	0	20	0.10	2	0	2	0	0	0
.........................................................................................................................................TTCTTCAAACTTAGTTTGC.............................	19	2	11	0.09	1	0	0	0	1	0
.......................................................................................................................................CCTTCCTCAAACTAAGCTTG..............................	20	3	18	0.06	1	0	0	0	0	1
..........................................................................................AACTTTCCGAAGGCAAAGAACTGACT.....................................................................	26	0	20	0.05	1	1	0	0	0	0
...............................................................................................TCCGAAGGCAAAGAACTGACTTAAACTA..............................................................	28	2	20	0.05	1	0	1	0	0	0
GCCCATATTTTGCTAGGGGTTCAC.................................................................................................................................................................	24	1	20	0.05	1	1	0	0	0	0
..........TGCTAGGGGTTCAGTTAACATC.........................................................................................................................................................	22	1	20	0.05	1	1	0	0	0	0
...........................................................................................................................................................GAAAACACTTTTACCACAAAATTTGCAAG.	29	0	20	0.05	1	1	0	0	0	0
............................................................................................CTTTCCGAAGGCAAAGAACTGACTTAA..................................................................	27	0	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13269:69405-69589 +	dan_303	CGGCTATAAAACGATCCCCAAGTGAATTGTAGAAGTCCATAA--ATTGTCCTTCCGAGATTGAGAAAAGAGGAGAGCAACAAACGGCAGCGATTGAAAGGCT-TCCGTTTCTTGACTG----------------AATTTGTATCGATC-TGGCCTGCAAGAAGTTTGATTCAAACCTTTTGTGAAAATG----------GTGTTTTAAACGTTCT
droBip1	scf7180000394777:19027-19211 -		CGGCTATAAATCGATCCCCAAGTGAATTGTAGAAGTCCATAA--ATTGTCCTTCCGAGATTGAGAAACGAGGAGGGCAGCAAACGGCAGCGATTGAAAGGAT-TCCGTTGCTTGACTG----------------AATTTGTATCGATG-TGGCCTGCAAGAAGTTTGTTGCAAACCTTTTGTGAAAATG----------GTGTTTAATGCGTTCT
droKik1	scf7180000301875:13088-13272 -		CAGCTATAAATCGATCTCCAAGAGAGTTGTAAAAATCCATGA--ATTGACCTTCAGAGATTGTAAAGCGAGGTGGGCAGCAGACAGCAGCAATGCAAAGGTT-GCCGTTACCTGACTG----------------CACTTTTATGGACG-TAGCTTGCAAGAAATTTGTTGCAAACCTTTGGTGAAAATG----------GTGTTTGATACGTTCT
droFic1	scf7180000448920:4855-5038 +		CAGCTATGAAGCGATCCCCAAGTGAGTTGTAGAAATCCATGA--ATTGACCTTCAGAGATTGTAAACCGAGGTGGGCAGTAGACAGCGGCGATGCAAAGGTT-GTCGTTTCCTGACTG----------------CACTTTTATGGATG-TGGCTTGCAG-AAATTTGTTTCAAACCTTTGGTGAAAATG----------GTGTTTAATGCGTTCT
droEle1	scf7180000490094:72927-73111 -		CAACTATGAAGCGATCTCCAAGTAAGTTGTAAAAGTCCTTGA--ATTGTCATTCAGAGATTGTAAAGCGAGGCGGGCAGTATACGGCGGCTATAGAAAGGTT-TCCGTTACCTGGCTG----------------CACTTTGATAGACG-TAGCCTGCAAGGAGTTTGTTGCAAACCTTTGGTGAAAATG----------GTGCTTTATGCGTTCT
droRho1	scf7180000776885:29548-29731 +		CGTCTATAAAACGATCCCCAAGTGAGTTGTAGAAATCCATGA--ATTGTCCTTCCGAGATTGTAAAGCGAGGCGGGCAGTAGACGGCAGCAAAATATA-GTT-TCCGTTACTGGATTC----------------CATTTTTATAGATG-TGGCCTGCAAGGAGTTTGTTGCAAACCTTTGGTGAAGGTG----------GTGTTTGATGCGTTCT
droBia1	scf7180000301280:13977-14161 +		CTGCTATGAATCGCTCTCCAAGTGAATTGTAGAAGTCCATGA--ATTGGTCTTCAGAGACTGTAAAACGGGGTGGGCAGCAAACGGCGGAAATTGCAATGTT-GCAGTTGCCCAACTG----------------TAATTTTATCGATA-TAGCTTGCAAATAATTTTTTGCAAACCTTTCGTGAAAGTG----------GTATTTGATGCGATCT
droTak1	scf7180000414848:2418-2603 +		CTGCTATGAATCGCTCTCCAAGTGAATTGTAGAAGTCCAAGA--ATTGGTCTTCGGAGACTGTAAAACGAGGGGGGCAGTAAACAGCGGCAATGGCAAGGTTTGCAGTTGCCCAACTG-T--------------TAATTTTATCGATG-TAGCTTGCAAATAACTT-TTGCAAACCTTTGGTGAAAGTG----------GTGTTTGATGCGGTCT
droEug1	scf7180000405427:49186-49370 +		CGGCTATAAAACGATCCCCAAGCAGGTTATAGAAGTCCATGA--ATTGTCCTTCAGAAATTGTAAAACGAGGTGGGCAGTAAACAGCGGCTATGGTGAGGGG-TCCGTTGCCTGACTG----------------CACTTGAATAGACG-TGGCATGCATATAATTAGTTGCAAAACTTCGGTGAAAGTG----------GTGCCTGATGCGTTCC
dm3	chr3LHet:867822-868006 -		CAGCTATGAAGCGATCCCCTAGTGTGTTGAAAAAATCCAAAA--ATTGGTTTTCGGATATCGTAAAGTGAGGTCGGCAGTATACAGCAGCAAGTGTTATTTG-TCCGTTACCCAGCTG----------------TATATTTAAAGATG-TTGCCTGTAAGTAGTTTGTCGCAAAGTCGTTGCGGAAAGT----------ATGTTTTATGCGGTTT
droSim2	node_26283:1057-1241 -		CGGCTATGAAGCGATCCCCCAGAGTGTTGTAGAAGTCCATGA--ATTGACCTTCAGAGATATTAAATCGAGGTGGGCAGTAGACAGCGGCAATGCAAAGGTT-GCCGTTTCCTGAGAT----------------CACTTTTATGGACG-TGGCTTGCAGGTAATTTGTTGCAAACCTTTGATGAAAGTG----------GTGTTTGATGCGTTCT
droSec2	scaffold_571:3150-3334 +		CAGCTATGAAGCGATCCCCTAGTGTGTTAAAAAAATTCAATA--ATTGGTATTCGGATATCGTAAAGCGAGGTGGGCAATATACAGCAGCAAGTGTTATTTG-TCCTTTACCGAGATG----------------TATATTTAAAGATG-CTGCCTGTAAGTAGTTTGTCGCAAAGTCGTTGCGGAAAGT----------ATGTTTTATGCGTTTT
droYak3	chr2h:755098-755282 +		CGGCTATGAAGCGATCCCCCAGAGTGTTGTAGAAGTCCATGA--ATTGACCTTCAGAGATGTTAAATCGAGGTGGGCAGTAGACAGCGGCAATGCAAAGGTT-GCCGTTTCCTGAAAT----------------CACTTTTATGGACG-TGGCTTGCAGGTAATTTGATGCAAACCTTTGATGAAAGTG----------GTGTTTGATGCGTTCT
droEre2	scaffold_4784:23985443-23985624 +		TAGCTATAAAGCGATCCCCCAGTGTGTTGTAGAAGTCCATGATAGTTGACCGTCAGAGATAGCAAAGC-AGGTGGGCAGTAGACAGCGGCAATGCAAAGGTT-ACCGTTTCCTGGCTG----------------CACTTTTATGGACG-TGGCTTGGAAGTAATTTGTTGCAAGCCTTTGGTGAAAGTG--------------CTGATGCGTTCT
dp5	XR_group8:6409081-6409246 -		CTGCTATAAAAAGCATCCCTAAAGAGTTTCA---------------TGAACTTCAGTGATTGTAAAGCGAGGCGGGCAGTAAACAACGGCCATGATAAGATT-TCCATTACCCGAATG----------------TACCTGTACAGATC-TATATTGAAAATAGTTTGTTGCAAACCTTCTTTG----------------ATTTTTGATGCGGTTT
droPer2	scaffold_36:805318-805488 -		CTGCTATAAAAAGCATCCCTAAAGAGT--------TTCATGA--ACCGAACTTCAGTGATTGTAAAGCGAGGCGGGCAGTAAACAACGGCCATGATAAGATT-TCCATTACCCGAAAG----------------TACCTGTACAGATG-TATATTGAAAATAGTTTGTTGCAAACCTTCTTTG----------------ATGTTTGATGCGGTTT
droWil2	scf2_1100000004762:718149-718333 +		CTGCAATAAAGCGATCTCCGAGTGTGTTAAAGAAATCGGTAA--ATTCCTTTTCAGAGATTGAGAAGCGTGGTGGGCAGTACAGGGCAACCAATGTAGTGTT-GCCGCAGCTGGTTTG----------------GACGGTTATAGCAG-TTGCTTGTAGGTGCTGTGTCTCAAATCTGTTGAGAAACGA----------GTGTTTTATACGGTTT
droVir3	scaffold_10471:45525-45668 -		CAATTATAAAACCGGGGACAAGGCT----------------------------------------GCCTGGGTGGGAGATACGCAGCCGCGATTGTAAGGTC-GCCGAGTGGGCTGGGCAGCCTGACCTGGCCGCACTCCACTCAATCTTGGTATGCTGGCAGTTCAAT------------------------------TTTTTTTATTCATTGT
droMoj3	scaffold_6680:24118884-24119068 +		CAACTATAAATTTCGGGCCAAGGTTGTCCAGGAGATTTTGGA--ATGGGCCTTGTCCGATCTTATGTCTTGGTGGACAATATGCGGCAGCTATTGTTATGTC-ACCAGTTGGGCAGATTA--------------CTCTGATCTTGGCG-CACTGTA------------CCCATACCTCTTGTTAAGCTGGCAGTTCAATGTACTTTATACCGCTT
droGri2	scaffold_15116:660358-660416 +		TTGCAATAAATCTATCCCTTGAAGAGTCGTCAGAATTCAAGA--AATGATTTTTAGAGATT----------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CGGCTATAAAACGATCCCCAAGTGAATTGTAGAAGTCCATAA--ATTGTCCTTCCGAGATTGAGAAAAGAGGAGAGCAACAAACGGCAGCGATTGAAAGGCT-TCCGTTTCTTGACTG----------------AATTTGTATCGATC-TGGCCTGCAAGAAGTTTGATTCAAACCTTTTGTGAAAATG----------GTGTTTTAAACGTTCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................TGACTG----------------AATTTGTATCGATC-TGGCC.............................................................	25	3	2.00	6	0	6	0	0	0	0
................................................................................................................TGACTG----------------AATTTGTATCGATC-TGGCCT............................................................	26	3	0.67	2	0	2	0	0	0	0
.........................................................................................................................................TTGTATCGATC-TGGCCTGCAAGAAG....................................................	25	3	0.33	1	1	0	0	0	0	0
.......................................................GAGATTGAGAAAAGAGGAGAGCAACA......................................................................................................................................	26	3	0.33	1	1	0	0	0	0	0
.............................................................................................................TCTTGACTG----------------AATTTGTATCGATC-TGGCC.............................................................	28	3	0.33	1	0	1	0	0	0	0
........................AATTGTAGAAGTCCATAA--ATTGTCCT...................................................................................................................................................................	26	20	0.25	5	4	1	0	0	0	0
................................................................................................................TGACTG----------------AATTTGTATCGATC-TGGCCC............................................................	26	4	0.25	1	0	1	0	0	0	0
......................TGAATTGTAGAAGTCCATAA--ATTGTCC....................................................................................................................................................................	27	20	0.20	4	0	4	0	0	0	0
................................................................................................................................................GATC-TGGCCTGCAAGAAGA...................................................	19	6	0.17	1	0	1	0	0	0	0
..........................TTGTAGAAGTCCATAA--ATTGTCCTT..................................................................................................................................................................	25	20	0.15	3	2	1	0	0	0	0
....................................................TCCGAGATTGAGAAAAGAGGAGA............................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0
....................................................TCCGAGATTGAGAAAAGAGGAGAGC..........................................................................................................................................	25	10	0.10	1	0	1	0	0	0	0
.............................................................................................TGAAAGGCT-TCCGTTTCTTGACTG----------------AA...............................................................................	26	20	0.10	2	2	0	0	0	0	0
...........................TGTAGAAGTCCATAA--ATTGTCCTT..................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	2
...............................................................................CAAACGGCAGCGATTGAAAGGCT-TC..............................................................................................................	25	11	0.09	1	0	1	0	0	0	0
...............CCCCAAGTGAATTGTAGAAGTCCATA..............................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.........................................A--ATTGTCCTTCCGAGATTGAGA......................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
....................................CCATAA--ATTGTCCTTCCGAGA............................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...................................................................................................GCT-TCCGTTTCTTGACTG----------------AATTTGTATC.......................................................................	28	20	0.05	1	1	0	0	0	0	0
.......................................................................................AGCGATTGAAAGGCT-TCCGT...........................................................................................................	20	20	0.05	1	1	0	0	0	0	0
............................................................................................TTGAAAGGCT-TCCGTTTCTTGACTG----------------.................................................................................	25	20	0.05	1	1	0	0	0	0	0
........AAACGATCCCCAAGTGAATTGTAGA......................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
..........................TTGTAGAAGTCCATAA--ATTGTCCTTC.................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
..............................................................................................GAAAGGCT-TCCGTTTCTTGACTG----------------AATT.............................................................................	27	20	0.05	1	1	0	0	0	0	0
..................CAAGTGAATTGTAGAAGTCCA................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
...................................................................................................GCT-TCCGTTTCTTGACTG----------------AATTTG...........................................................................	24	20	0.05	1	1	0	0	0	0	0

droBip1

CGGCTATAAATCGATCCCCAAGTGAATTGTAGAAGTCCATAA--ATTGTCCTTCCGAGATTGAGAAACGAGGAGGGCAGCAAACGGCAGCGATTGAAAGGAT-TCCGTTGCTTGACTG----------------AATTTGTATCGATG-TGGCCTGCAAGAAGTTTGTTGCAAACCTTTTGTGAAAATG----------GTGTTTAATGCGTTCT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAGCTATAAATCGATCTCCAAGAGAGTTGTAAAAATCCATGA--ATTGACCTTCAGAGATTGTAAAGCGAGGTGGGCAGCAGACAGCAGCAATGCAAAGGTT-GCCGTTACCTGACTG----------------CACTTTTATGGACG-TAGCTTGCAAGAAATTTGTTGCAAACCTTTGGTGAAAATG----------GTGTTTGATACGTTCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAGCTATGAAGCGATCCCCAAGTGAGTTGTAGAAATCCATGA--ATTGACCTTCAGAGATTGTAAACCGAGGTGGGCAGTAGACAGCGGCGATGCAAAGGTT-GTCGTTTCCTGACTG----------------CACTTTTATGGATG-TGGCTTGCAG-AAATTTGTTTCAAACCTTTGGTGAAAATG----------GTGTTTAATGCGTTCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAACTATGAAGCGATCTCCAAGTAAGTTGTAAAAGTCCTTGA--ATTGTCATTCAGAGATTGTAAAGCGAGGCGGGCAGTATACGGCGGCTATAGAAAGGTT-TCCGTTACCTGGCTG----------------CACTTTGATAGACG-TAGCCTGCAAGGAGTTTGTTGCAAACCTTTGGTGAAAATG----------GTGCTTTATGCGTTCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGTCTATAAAACGATCCCCAAGTGAGTTGTAGAAATCCATGA--ATTGTCCTTCCGAGATTGTAAAGCGAGGCGGGCAGTAGACGGCAGCAAAATATA-GTT-TCCGTTACTGGATTC----------------CATTTTTATAGATG-TGGCCTGCAAGGAGTTTGTTGCAAACCTTTGGTGAAGGTG----------GTGTTTGATGCGTTCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTGCTATGAATCGCTCTCCAAGTGAATTGTAGAAGTCCATGA--ATTGGTCTTCAGAGACTGTAAAACGGGGTGGGCAGCAAACGGCGGAAATTGCAATGTT-GCAGTTGCCCAACTG----------------TAATTTTATCGATA-TAGCTTGCAAATAATTTTTTGCAAACCTTTCGTGAAAGTG----------GTATTTGATGCGATCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTGCTATGAATCGCTCTCCAAGTGAATTGTAGAAGTCCAAGA--ATTGGTCTTCGGAGACTGTAAAACGAGGGGGGCAGTAAACAGCGGCAATGGCAAGGTTTGCAGTTGCCCAACTG-T--------------TAATTTTATCGATG-TAGCTTGCAAATAACTT-TTGCAAACCTTTGGTGAAAGTG----------GTGTTTGATGCGGTCT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CGGCTATAAAACGATCCCCAAGCAGGTTATAGAAGTCCATGA--ATTGTCCTTCAGAAATTGTAAAACGAGGTGGGCAGTAAACAGCGGCTATGGTGAGGGG-TCCGTTGCCTGACTG----------------CACTTGAATAGACG-TGGCATGCATATAATTAGTTGCAAAACTTCGGTGAAAGTG----------GTGCCTGATGCGTTCC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CAGCTATGAAGCGATCCCCTAGTGTGTTGAAAAAATCCAAAA--ATTGGTTTTCGGATATCGTAAAGTGAGGTCGGCAGTATACAGCAGCAAGTGTTATTTG-TCCGTTACCCAGCTG----------------TATATTTAAAGATG-TTGCCTGTAAGTAGTTTGTCGCAAAGTCGTTGCGGAAAGT----------ATGTTTTATGCGGTTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................TGGTTTTCGGATATCGTAAAGTGAGG...............................................................................................................................................	26	4	5.75	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	5	0	2	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TAGTTTGTCGCAAAGTCGTTGCGGA..............................	25	4	5.25	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	2	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0
...................................................................TGAGGTCGGCAGTATACAGCAGCAAG..........................................................................................................................	26	4	5.00	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	1	0	0	0	0	0	0
...................................................................................CAGCAGCAAGTGTTATTTG-TCCGT...........................................................................................................	24	4	4.25	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................AAGTGAGGTCGGCAGTATACAGCAGC.............................................................................................................................	26	4	3.25	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
...............................................................................TATACAGCAGCAAGTGTTATTTG-TCCGT...........................................................................................................	28	4	3.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	3	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................TCCGTTACCCAGCTG----------------TATATTTAAAGA.....................................................................	27	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGTAAGTAGTTTGTCGCA...........................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGCGGAAAGT----------ATGTTTTATGCGGT..	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TCGTTGCGGAAAGT----------ATGTTTT.........	21	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CGGCTATGAAGCGATCCCCCAGAGTGTTGTAGAAGTCCATGA--ATTGACCTTCAGAGATATTAAATCGAGGTGGGCAGTAGACAGCGGCAATGCAAAGGTT-GCCGTTTCCTGAGAT----------------CACTTTTATGGACG-TGGCTTGCAGGTAATTTGTTGCAAACCTTTGATGAAAGTG----------GTGTTTGATGCGTTCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................GAGGTGGGCAGTAGAA...................................................................................................................................	16	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

CAGCTATGAAGCGATCCCCTAGTGTGTTAAAAAAATTCAATA--ATTGGTATTCGGATATCGTAAAGCGAGGTGGGCAATATACAGCAGCAAGTGTTATTTG-TCCTTTACCGAGATG----------------TATATTTAAAGATG-CTGCCTGTAAGTAGTTTGTCGCAAAGTCGTTGCGGAAAGT----------ATGTTTTATGCGTTTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................TAGTTTGTCGCAAAGTCGTTGCGGAA.............................	26	8	0.13	1	0	0	1	0

droYak3

CGGCTATGAAGCGATCCCCCAGAGTGTTGTAGAAGTCCATGA--ATTGACCTTCAGAGATGTTAAATCGAGGTGGGCAGTAGACAGCGGCAATGCAAAGGTT-GCCGTTTCCTGAAAT----------------CACTTTTATGGACG-TGGCTTGCAGGTAATTTGATGCAAACCTTTGATGAAAGTG----------GTGTTTGATGCGTTCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................TGTTAAATCGAGGTGGGCAGTAGACA..................................................................................................................................	26	12	4.33	52	0	30	0	0	0	0	0	0	0	0	22
.............................TAGAAGTCCATGA--ATTGACCTTCAGA..............................................................................................................................................................	26	20	3.05	61	0	29	1	0	0	0	0	0	0	0	31
...........................................................TGTTAAATCGAGGTGGGCAGTAGACAG.................................................................................................................................	27	12	2.17	26	0	7	0	0	0	0	1	0	0	0	18
.............................TAGAAGTCCATGA--ATTGACCTTCAGAG.............................................................................................................................................................	27	20	1.05	21	0	11	10	0	0	0	0	0	0	0	0
..............................................TGACCTTCAGAGATGTTAAATCGAGGT..............................................................................................................................................	27	11	0.91	10	0	0	0	0	0	0	0	0	0	0	10
..............................................................TAAATCGAGGTGGGCAGTAGACAG.................................................................................................................................	24	20	0.90	18	0	4	0	1	0	0	0	0	0	0	13
.............................TAGAAGTCCATGA--ATTGACCTTCA................................................................................................................................................................	24	20	0.75	15	0	0	15	0	0	0	0	0	0	0	0
..............TCCCCCAGAGTGTTGTAGAAGTCCA................................................................................................................................................................................	25	20	0.60	12	0	12	0	0	0	0	0	0	0	0	0
..............................................................TAAATCGAGGTGGGCAGTAGACAGC................................................................................................................................	25	20	0.55	11	0	10	0	0	0	0	1	0	0	0	0
..............TCCCCCAGAGTGTTGTAGAAGTCCATG..............................................................................................................................................................................	27	20	0.55	11	0	10	1	0	0	0	0	0	0	0	0
...............................................................................TAGACAGCGGCAATGCAAAGGT..................................................................................................................	22	20	0.50	10	0	6	0	1	0	0	1	0	0	0	2
.............................................................................................GCAAAGGTT-GCCGTTTCCTGAAAT----------------CAC..............................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................T-GCCGTTTCCTGAAAT----------------CACTTTTATGG......................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....................................................TCAGAGATGTTAAATCGAGGTGGGC..........................................................................................................................................	25	11	0.45	5	0	3	1	0	0	0	1	0	0	0	0
..............TCCCCCAGAGTGTTGTAGAAGTCCAT...............................................................................................................................................................................	26	20	0.45	9	0	9	0	0	0	0	0	0	0	0	0
.....................................................................................................................T----------------CACTTTTATGGACG-TGGCTTGCAGG.......................................................	26	20	0.40	8	0	7	0	0	0	0	0	0	0	0	1
.............................TAGAAGTCCATGA--ATTGACCTTCAG...............................................................................................................................................................	25	20	0.40	8	0	1	1	0	0	0	0	0	0	0	6
....................................................TCAGAGATGTTAAATCGAGGTGGG...........................................................................................................................................	24	11	0.36	4	0	4	0	0	0	0	0	0	0	0	0
..............................AGAAGTCCATGA--ATTGACCTTCAGAGA............................................................................................................................................................	27	20	0.35	7	0	7	0	0	0	0	0	0	0	0	0
.............................................................TTAAATCGAGGTGGGCAGTAGACAGC................................................................................................................................	26	20	0.35	7	0	6	0	0	0	0	1	0	0	0	0
............................................................GTTAAATCGAGGTGGGCAGTAGACA..................................................................................................................................	25	12	0.33	4	0	4	0	0	0	0	0	0	0	0	0
...........................................................TGTTAAATCGAGGTGGGCAGTAGA....................................................................................................................................	24	12	0.33	4	0	3	1	0	0	0	0	0	0	0	0
...............CCCCCAGAGTGTTGTAGAAGTCCATG..............................................................................................................................................................................	26	20	0.30	6	0	5	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................TGAAAGTG----------GTGTTTGATGCGTTCT	24	20	0.30	6	0	4	0	0	0	0	2	0	0	0	0
....................................................TCAGAGATGTTAAATCGAGGTGGGCA.........................................................................................................................................	26	11	0.27	3	0	3	0	0	0	0	0	0	0	0	0
...................................................TTCAGAGATGTTAAATCGAGGTGGGCA.........................................................................................................................................	27	11	0.27	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................TCGAGGTGGGCAGTAGACAGCGGC.............................................................................................................................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
...........................................................TGTTAAATCGAGGTGGGCAGTA......................................................................................................................................	22	12	0.25	3	0	2	1	0	0	0	0	0	0	0	0
...........................................................TGTTAAATCGAGGTGGGCAGTAG.....................................................................................................................................	23	12	0.25	3	0	3	0	0	0	0	0	0	0	0	0
...............................................................AAATCGAGGTGGGCAGTAGACAGC................................................................................................................................	24	20	0.25	5	0	3	2	0	0	0	0	0	0	0	0
..............................................................................GTAGACAGCGGCAATGCAAAGGT..................................................................................................................	23	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TGAAAGTG----------GTGTTTGATGCGTTC.	23	20	0.20	4	0	1	1	1	0	0	1	0	0	0	0
...............................................................................TAGACAGCGGCAATGCAAAGGTT-GCCGT...........................................................................................................	28	20	0.20	4	0	2	2	0	0	0	0	0	0	0	0
........................TGTTGTAGAAGTCCATGA--ATTGACCT...................................................................................................................................................................	26	20	0.20	4	2	1	1	0	0	0	0	0	0	0	0
...............................................................................TAGACAGCGGCAATGCAAAGGTT-G...............................................................................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
......................................................AGAGATGTTAAATCGAGGTGGGCA.........................................................................................................................................	24	11	0.18	2	0	2	0	0	0	0	0	0	0	0	0
..............................................TGACCTTCAGAGATGTTAAATCGAGG...............................................................................................................................................	26	11	0.18	2	0	1	1	0	0	0	0	0	0	0	0
...................................................TTCAGAGATGTTAAATCGAGGTGGGC..........................................................................................................................................	26	11	0.18	2	0	1	1	0	0	0	0	0	0	0	0
...........................................................TGTTAAATCGAGGTGGGCAGTAGACAGC................................................................................................................................	28	12	0.17	2	0	0	0	0	0	0	2	0	0	0	0
...............................................................................TAGACAGCGGCAATGCAAAGGTT-GC..............................................................................................................	25	20	0.15	3	0	1	1	1	0	0	0	0	0	0	0
........................................................................TGGGCAGTAGACAGCGGCAATGCAAA.....................................................................................................................	26	20	0.15	3	0	1	0	0	0	0	2	0	0	0	0
.............................TAGAAGTCCATGA--ATTGACCTTCAGAGA............................................................................................................................................................	28	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
........................TGTTGTAGAAGTCCATGA--ATTGACC....................................................................................................................................................................	25	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
..................................................................TCGAGGTGGGCAGTAGACAGCGG..............................................................................................................................	23	20	0.15	3	0	1	0	1	0	0	1	0	0	0	0
................................................................................AGACAGCGGCAATGCAAAGGTT-GCC.............................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................TCGAGGTGGGCAGTAGACAGCGGCA............................................................................................................................	25	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
...........................TGTAGAAGTCCATGA--ATTGACCTTC.................................................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................T----------------CACTTTTATGGACG-TGGCTTGCAG........................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...............CCCCCAGAGTGTTGTAGAAGTCCAT...............................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...........................TGTAGAAGTCCATGA--ATTGACCTTCA................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................TAAATCGAGGTGGGCAGTAGACAGCGGC.............................................................................................................................	28	20	0.10	2	1	0	0	0	0	0	1	0	0	0	0
.........................................................................GGGCAGTAGACAGCGGCAATGCAAAGG...................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
.....................GAGTGTTGTAGAAGTCCATGA--ATTGACC....................................................................................................................................................................	28	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0
.......................................TGA--ATTGACCTTCAGAGATGTTAAA.....................................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
...................................TCCATGA--ATTGACCTTCAGAGATGTT........................................................................................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
........................................GA--ATTGACCTTCAGAGATGTTAAA.....................................................................................................................................................	24	11	0.09	1	0	0	0	0	0	0	1	0	0	0	0
..............................................TGACCTTCAGAGATGTTAAATCGA.................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
...................................................TTCAGAGATGTTAAATCGAGGTGG............................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
...................................................TTCAGAGATGTTAAATCGAGGTGGG...........................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
........................................GA--ATTGACCTTCAGAGATGTTAAATC...................................................................................................................................................	26	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................GATGTTAAATCGAGGTGGGCAGTAG.....................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
....................................................TCAGAGATGTTAAATCGAGGTGGGCAG........................................................................................................................................	27	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
............................................................GTTAAATCGAGGTGGGCAGTAGA....................................................................................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............................................................GTTAAATCGAGGTGGGCA.........................................................................................................................................	18	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................TGTTAAATCGAGGTGGGCAGTAGAC...................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................ATGTTAAATCGAGGTGGGCAGTAGA....................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TTTATGGACG-TGGCTTGCAGGTAA....................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................GAAGTCCATGA--ATTGACCTTCAGAGA............................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............GATCCCCCAGAGTGTTGTAGAA.....................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................TAGACAGCGGCAATGCAAAGGTT-GCC.............................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TGGACG-TGGCTTGCAGGTAATTTG................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................GGCAGTAGACAGCGGCAATGCAAAG....................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................TTGTAGAAGTCCATGA--ATTGACCTTCA................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................AGAAGTCCATGA--ATTGACCTTCAGAG.............................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....TATGAAGCGATCCCCCAGAGTGTTG..........................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................TTGTAGAAGTCCATGA--ATTGACCTTC.................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................GTCCATGA--ATTGACCTTCA................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................TTAAATCGAGGTGGGCAGTAGA....................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................GTAGAAGTCCATGA--ATTGACCTTCAGAG.............................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................TAAATCGAGGTGGGCAGTAGACA..................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................TATGGACG-TGGCTTGCAGGTAATTTG................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
.......GAAGCGATCCCCCAGAGTGTTGTAGA......................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............TCCCCCAGAGTGTTGTAGAAGTC..................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................TTTTATGGACG-TGGCTTGCAGGTAA....................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................GGTGGGCAGTAGACAGCGGCAATG.........................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................TAGAAGTCCATGA--ATTGACCT...................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................TTTATGGACG-TGGCTTGCAGGTAATT..................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................AAATCGAGGTGGGCAGTA......................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................TCGAGGTGGGCAGTAGACAGCGGCAA...........................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................AGAAGTCCATGA--ATTGACCTTCAGA..............................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....TATGAAGCGATCCCCCAGAGTGT............................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................CGAGGTGGGCAGTAGACAGCGGCAA...........................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................GAGTGTTGTAGAAGTCCATGA--ATTG.......................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TTATGGACG-TGGCTTGCAGGTAATT..................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................GAAAGTG----------GTGTTTGATGCGT...	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................TAAATCGAGGTGGGCAGTAGAC...................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................TATGGACG-TGGCTTGCAGGTAATT..................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................AGTCCATGA--ATTGACCTTCAGAG.............................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TTATGGACG-TGGCTTGCAGGT......................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............CCCCCAGAGTGTTGTAGAAGTCA.................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................TTAAATCGAGGTGGGCAGTAGAC...................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................AATGCAAAGGTT-GCCGTTTCC.......................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................CGAGGTGGGCAGTAGACAG.................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................TAGACAGCGGCAATGCAAAGG...................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGATGAAAGTG----------GTGTTTGATGCGTT..	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.............................TAGAAGTCCATGA--ATTGACC....................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................TAGACAGCGGCAATGCAAAG....................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................AAATCGAGGTGGGCAGTAGACAGCG...............................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................CACTTTTATGGACG-TGGCTTGCAGG.......................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................GGCAGTAGACAGCGGCAATGCAAAGGT..................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............CCCCCAGAGTGTTGTAGAAGTCCATGA--...........................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GATGAAAGTG----------GTGTTTGATGCGTTC.	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......TGAAGCGATCCCCCAGAGTGTTG..........................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................TTGTAGAAGTCCATGA--ATTGACCTT..................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................CAATGCAAAGGTT-GCCGTTTCCTGA....................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............CCCCCAGAGTGTTGTAGAAGTCCA................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................TGGGCAGTAGACAGCGGCAATGCAAAG....................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................CCCAGAGTGTTGTAGAAGTCCATGA--AT.........................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
..............TCCCCCAGAGTGTTGTAGAAGTCC.................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................GTAGACAGCGGCAATGCAAAGG...................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
...................................TCCATGA--ATTGACCTTCAGAGA............................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................GAGGTGGGCAGTAGACAGCGGCAA...........................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
...............................................................................TAGACAGCGGCAATGCAAAGGTT-................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................TAGAAGTCCATGA--ATTGACCTTCAGAC.............................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TGAAAGTG----------GTGTTTGATGC.....	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................TAAATCGAGGTGGGCAGTAGACAGCGG..............................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TGAAAGTG----------GTGTTTGATGCG....	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

TAGCTATAAAGCGATCCCCCAGTGTGTTGTAGAAGTCCATGATAGTTGACCGTCAGAGATAGCAAAGC-AGGTGGGCAGTAGACAGCGGCAATGCAAAGGTT-ACCGTTTCCTGGCTG----------------CACTTTTATGGACG-TGGCTTGGAAGTAATTTGTTGCAAGCCTTTGGTGAAAGTG--------------CTGATGCGTTCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................GGCAATGCAAAGGTT-ACCGTTTCC.......................................................................................................	24	2	0.50	1	1	0	0	0	0	0	0

dp5

CTGCTATAAAAAGCATCCCTAAAGAGTTTCA---------------TGAACTTCAGTGATTGTAAAGCGAGGCGGGCAGTAAACAACGGCCATGATAAGATT-TCCATTACCCGAATG----------------TACCTGTACAGATC-TATATTGAAAATAGTTTGTTGCAAACCTTCTTTG----------------ATTTTTGATGCGGTTT

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

CTGCTATAAAAAGCATCCCTAAAGAGT--------TTCATGA--ACCGAACTTCAGTGATTGTAAAGCGAGGCGGGCAGTAAACAACGGCCATGATAAGATT-TCCATTACCCGAAAG----------------TACCTGTACAGATG-TATATTGAAAATAGTTTGTTGCAAACCTTCTTTG----------------ATGTTTGATGCGGTTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

CTGCAATAAAGCGATCTCCGAGTGTGTTAAAGAAATCGGTAA--ATTCCTTTTCAGAGATTGAGAAGCGTGGTGGGCAGTACAGGGCAACCAATGTAGTGTT-GCCGCAGCTGGTTTG----------------GACGGTTATAGCAG-TTGCTTGTAGGTGCTGTGTCTCAAATCTGTTGAGAAACGA----------GTGTTTTATACGGTTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................TTCAGAGATTGAGAAGCGTGGTG.............................................................................................................................................	23	20	12.30	246	0	0	0	246	0
...............................................................................................................TGGTTTG----------------GACGGTTATAGCAG-TTGC..............................................................	25	20	2.75	55	0	55	0	0	0
...............................................................................................................TGGTTTG----------------GACGGTTATAGCAG-TTGCTTA...........................................................	28	20	1.40	28	0	0	0	28	0
........................................................................................ACCAATGTAGTGTT-GCCGCAGCTGG.....................................................................................................	25	20	1.25	25	0	25	0	0	0
.TGCAATAAAGCGATCTCCGAGTGTGT............................................................................................................................................................................................	26	7	1.14	8	0	6	1	1	0
......................TGTGTTAAAGAAATCGGTAA--ATTCCTTT...................................................................................................................................................................	28	20	1.00	20	0	0	0	20	0
...................................................................................................................TTG----------------GACGGTTATAGCAG-TTGCTTG...........................................................	24	20	0.95	19	0	0	0	19	0
...............................................................................................................TGGTTTG----------------GACGGTTATAGCAG-TTGCTTT...........................................................	28	20	0.90	18	0	1	0	17	0
............................................................TGAGAAGCGTGGTGGGCAGTACAGG..................................................................................................................................	25	20	0.85	17	0	0	0	17	0
...................................................................................................................................................................................TGAGAAACGA----------GTGTTTTATACGGTTT	26	3	0.67	2	0	0	0	1	1
......................TGTGTTAAAGAAATCGGTAA--ATTCCTT....................................................................................................................................................................	27	20	0.65	13	0	13	0	0	0
.TGCAATAAAGCGATCTCCGAGTGTG.............................................................................................................................................................................................	25	7	0.57	4	0	3	0	1	0
..................................................................................................................TTTG----------------GACGGTTATAGCAG-TTGCTTGTA.........................................................	27	20	0.45	9	0	0	0	9	0
...............................................................................................................TGGTTTG----------------GACGGTTATAGCAG-TT................................................................	23	20	0.35	7	0	0	0	7	0
...........................................................................................AATGTAGTGTT-GCCGCAGCTGGTTT..................................................................................................	25	20	0.35	7	0	0	0	7	0
............................................................................................................................................TATAGCAG-TTGCTTGTAGGTGCTGTG................................................	26	20	0.35	7	0	3	0	4	0
...................................................TTCAGAGATTGAGAAGCGTGGTGGTA..........................................................................................................................................	26	20	0.30	6	0	0	0	6	0
...............................................................................TACAGGGCAACCAATGTAGTGTT-G...............................................................................................................	24	20	0.30	6	0	6	0	0	0
..........................................................................................CAATGTAGTGTT-GCCGCAGCTGGT....................................................................................................	24	20	0.30	6	0	0	0	6	0
..........................................................................................................................................GTTATAGCAG-TTGCTTGTAGGTGCTG..................................................	26	20	0.25	5	0	0	0	5	0
.........................................................................................................................................................................TCAAATCTGTTGAGAAACGA----------GTGTTT..........	26	4	0.25	1	0	0	0	1	0
........................................................AGATTGAGAAGCGTGGTGGGC..........................................................................................................................................	21	20	0.25	5	0	4	1	0	0
...................................................TTCAGAGATTGAGAAGCGTGGTGGGC..........................................................................................................................................	26	20	0.25	5	0	0	5	0	0
...............................................................................................................TGGTTTG----------------GACGGTTATAGCAG-TTGCAA............................................................	27	20	0.25	5	0	0	0	5	0
...................................................................................................................TTG----------------GACGGTTATAGCAG-TTGCTTGT..........................................................	25	20	0.25	5	0	0	0	5	0
......................................................................................CAACCAATGTAGTGTT-GCCGCAGC........................................................................................................	24	20	0.25	5	0	5	0	0	0
...............................................................................................................TGGTTTG----------------GACGGTTATAGCAG-TTGCTT............................................................	27	20	0.25	5	0	0	0	5	0
.........................................................................................................CGCAGCTGGTTTG----------------GACGGTTATAGC.....................................................................	25	20	0.25	5	0	0	0	5	0
..................................................................................................................................................AG-TTGCTTGTAGGTGCTGTGTCC.............................................	23	6	0.17	1	0	0	0	0	1
...........................................................................................................................................TTATAGCAG-TTGCTTGTAGGTGC....................................................	23	20	0.15	3	0	0	0	3	0
................................................................AAGCGTGGTGGGCAGTACAGG..................................................................................................................................	21	20	0.15	3	0	0	0	2	1
...............................................................................................................TGGTTTG----------------GACGGTTATAGCAG-TTGCTTG...........................................................	28	20	0.15	3	0	0	0	3	0
..............................................................................GTACAGGGCAACCAATGTAGTGT..................................................................................................................	23	20	0.15	3	0	0	1	2	0
.............................................................................................TGTAGTGTT-GCCGCAGCTGG.....................................................................................................	20	20	0.15	3	0	3	0	0	0
...................................................................................................................TTG----------------GACGGTTATAGCAG-TTGC..............................................................	21	20	0.15	3	0	3	0	0	0
.....................................................................................................T-GCCGCAGCTGGTTTG----------------GACGGTTATAGC.....................................................................	28	20	0.15	3	0	3	0	0	0
......................................................................................CAACCAATGTAGTGTT-GCCGCAGCTGG.....................................................................................................	27	20	0.15	3	0	0	0	3	0
....AATAAAGCGATCTCCGAGTGT..............................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0
.TGCAATAAAGCGATCTCCGAGTG...............................................................................................................................................................................................	23	7	0.14	1	0	0	0	1	0
....AATAAAGCGATCTCCGAGTGTGTTA..........................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0
.....ATAAAGCGATCTCCGAGTGTG.............................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	1
...CAATAAAGCGATCTCCGAGTG...............................................................................................................................................................................................	21	7	0.14	1	0	0	0	1	0
...................................................................CGTGGTGGGCAGTACAGGGCA...............................................................................................................................	21	20	0.10	2	0	2	0	0	0
.....................................................................................................T-GCCGCAGCTGGTTTG----------------GACG.............................................................................	20	20	0.10	2	0	2	0	0	0
........................TGTTAAAGAAATCGGTAA--ATTCCTTTT..................................................................................................................................................................	27	20	0.10	2	0	0	0	2	0
............................................................TGAGAAGCGTGGTGGGCAGT.......................................................................................................................................	20	20	0.10	2	0	2	0	0	0
..............................................................................................................CTGGTTTG----------------GACGGTTATAGCAG-TTG...............................................................	25	20	0.10	2	0	2	0	0	0
...............................................................................................................TGGTTTG----------------GACGGTTATAGCAG-TTGCTCA...........................................................	28	20	0.10	2	0	0	0	2	0
...........................................................................................................................................TTATAGCAG-TTGCTTGTAGGTGCTG..................................................	25	20	0.10	2	0	2	0	0	0
.......................................................................................AACCAATGTAGTGTT-GCCGCAGCTG......................................................................................................	25	20	0.10	2	0	0	0	2	0
..........................................................................................................................................GTTATAGCAG-TTGCTTGTAGGTGC....................................................	24	20	0.10	2	0	0	0	2	0
......................................................AGAGATTGAGAAGCGTGGTGGG...........................................................................................................................................	22	20	0.10	2	0	2	0	0	0
..........................................................ATTGAGAAGCGTGGTGGGCAG........................................................................................................................................	21	20	0.10	2	0	0	0	0	2
..................................................................................................TGTT-GCCGCAGCTGGTTTG----------------GACGGTG..........................................................................	26	20	0.10	2	0	0	0	2	0
.......................................................................................AACCAATGTAGTGTT-GCCGCAGCTGG.....................................................................................................	26	20	0.10	2	0	2	0	0	0
........................................................................TGGGCAGTACAGGGCAACCAATGTA......................................................................................................................	25	20	0.10	2	0	2	0	0	0
.....................................................................................................T-GCCGCAGCTGGTTTG----------------GACGGTTA.........................................................................	24	20	0.10	2	0	2	0	0	0
...................................................TTCAGAGATTGAGAAGCGTGGTGGGCA.........................................................................................................................................	27	20	0.10	2	0	0	2	0	0
........................................................................................ACCAATGTAGTGTT-GCCGCAGCTGGTT...................................................................................................	27	20	0.10	2	0	0	0	2	0
...............................................................................................................TGGTTTG----------------GACGGTTATAGCAG-TTG...............................................................	24	20	0.10	2	0	0	2	0	0
......................TGTGTTAAAGAAATCGGTAA--ATTC.......................................................................................................................................................................	24	20	0.10	2	0	0	0	2	0
..................................................TTTCAGAGATTGAGAAGCGTGGT..............................................................................................................................................	23	20	0.10	2	0	0	0	2	0
...........................................................TTGAGAAGCGTGGTGGGCAGTACAG...................................................................................................................................	25	20	0.05	1	0	1	0	0	0
....................................................................................................................TG----------------GACGGTTATAGCAG-TTGC..............................................................	20	20	0.05	1	0	0	0	1	0
.......................................................................................AACCAATGTAGTGTT-GCCGCA..........................................................................................................	21	20	0.05	1	0	0	0	0	1
.......................................................................................................................................ACGGTTATAGCAG-TTGCTTGT..........................................................	21	20	0.05	1	0	1	0	0	0
........................TGTTAAAGAAATCGGTAA--ATT........................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
....................................................................................................TT-GCCGCAGCTGGTTTG----------------GACGT............................................................................	22	20	0.05	1	0	0	1	0	0
......................................................AGAGATTGAGAAGCGTGG...............................................................................................................................................	18	20	0.05	1	0	1	0	0	0
......................................................AGAGATTGAGAAGCGTGGTG.............................................................................................................................................	20	20	0.05	1	0	0	0	0	1
.......................................................GAGATTGAGAAGCGTGGTGG............................................................................................................................................	20	20	0.05	1	0	1	0	0	0
............................................................................................ATGTAGTGTT-GCCGCAGCTGG.....................................................................................................	21	20	0.05	1	0	0	1	0	0
..............................................................................................................................................TAGCAG-TTGCTTGTAGGTGCTGT.................................................	23	20	0.05	1	0	0	0	1	0
...........................................................................GCAGTACAGGGCAACCAATG........................................................................................................................	20	20	0.05	1	0	1	0	0	0
...............................................................GAAGCGTGGTGGGCAGTACAGGGC................................................................................................................................	24	20	0.05	1	0	0	1	0	0
..................................................................................................TGTT-GCCGCAGCTGGTTTG----------------GACGGTTA.........................................................................	27	20	0.05	1	0	1	0	0	0
...............................................................................TACAGGGCAACCAATGTAGTGTT-GCCGC...........................................................................................................	28	20	0.05	1	0	0	0	1	0
....................................................TCAGAGATTGAGAAGCGTGGTG.............................................................................................................................................	22	20	0.05	1	0	0	0	0	1
.........................................................................................................................................GGTTATAGCAG-TTGCTTGTAGGTG.....................................................	24	20	0.05	1	0	0	0	1	0
...................................................................CGTGGTGGGCAGTACAGGGC................................................................................................................................	20	20	0.05	1	0	0	0	0	1
...........................................................................................................CAGCTGGTTTG----------------GACGGTTATAGC.....................................................................	23	20	0.05	1	0	1	0	0	0
..........................................................................................................................................GTTATAGCAG-TTGCTTGTA.........................................................	19	20	0.05	1	0	1	0	0	0
........................................................................TGGGCAGTACAGGGCAACCAATGTAGTG...................................................................................................................	28	20	0.05	1	0	1	0	0	0
.............................AAGAAATCGGTAA--ATTCCTTT...................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
............................................................................................................................................TATAGCAG-TTGCTTGTAGG.......................................................	19	20	0.05	1	0	1	0	0	0
.......................................................................................AACCAATGTAGTGTT-GCCGCAGCT.......................................................................................................	24	20	0.05	1	0	0	0	1	0
.........AGCGATCTCCGAGTGTGTTAAAGAAA....................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
.............................................................................................................................................ATAGCAG-TTGCTTGTAGGTGCTGTG................................................	25	20	0.05	1	0	1	0	0	0
...........................................................................................................CAGCTGGTTTG----------------GACGGTTATA.......................................................................	21	20	0.05	1	0	1	0	0	0
.......................................................GAGATTGAGAAGCGTGGTGGG...........................................................................................................................................	21	20	0.05	1	0	0	0	1	0
.................................AATCGGTAA--ATTCCTTTTCAGAGATC..........................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
......................................................................................CAACCAATGTAGTGTT-GCCGCAGCT.......................................................................................................	25	20	0.05	1	0	0	0	1	0
................TCCGAGTGTGTTAAAGAAATCGGTAA--AT.........................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
..........................................................ATTGAGAAGCGTGGTGGGCAGTA......................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.........................................................GATTGAGAAGCGTGGTGGGC..........................................................................................................................................	20	20	0.05	1	0	0	0	0	1
...................................................TTCAGAGATTGAGAAGCGTGGTGGGCC.........................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.........................................................................................................................................GGTTATAGCAG-TTGCTTGTAGGTGCTG..................................................	27	20	0.05	1	0	1	0	0	0
..........................................................................................................................................GTTATAGCAG-TTGCTTGTAGGTGCTGTG................................................	28	20	0.05	1	0	1	0	0	0
..................................................................................................................TTTG----------------GACGGTTATAGCAG-TT................................................................	20	20	0.05	1	0	0	0	1	0
..................................................TTTCAGAGATTGAGAAGCGTGGTGGG...........................................................................................................................................	26	20	0.05	1	0	0	1	0	0
...........................TAAAGAAATCGGTAA--ATTCC......................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
.........................................A--ATTCCTTTTCAGAGATTGAGAAGC...................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...................................................TTCAGAGATTGAGAAGCGTGGTGGT...........................................................................................................................................	25	20	0.05	1	0	0	1	0	0
..............................................................................GTACAGGGCAACCAATGTAGTGTT-G...............................................................................................................	25	20	0.05	1	0	0	0	1	0

droVir3

CAATTATAAAACCGGGGACAAGGCT----------------------------------------GCCTGGGTGGGAGATACGCAGCCGCGATTGTAAGGTC-GCCGAGTGGGCTGGGCAGCCTGACCTGGCCGCACTCCACTCAATCTTGGTATGCTGGCAGTTCAAT------------------------------TTTTTTTATTCATTGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................GTC-GCCGAGTGGGCTGGGCA...............................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAACTATAAATTTCGGGCCAAGGTTGTCCAGGAGATTTTGGA--ATGGGCCTTGTCCGATCTTATGTCTTGGTGGACAATATGCGGCAGCTATTGTTATGTC-ACCAGTTGGGCAGATTA--------------CTCTGATCTTGGCG-CACTGTA------------CCCATACCTCTTGTTAAGCTGGCAGTTCAATGTACTTTATACCGCTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................TA--------------CTCTGATCTTGGCG-CACTGTA------------CCCA...........................................	27	2	20.50	41	39	0	0	0	1	1
......................................................................................................................TA--------------CTCTGATCTTGGCG-CACTGTA------------CCC............................................	26	2	14.00	28	20	0	0	0	8	0
..........................TCCAGGAGATTTTGGA--ATGGGCCTTG.................................................................................................................................................................	26	2	11.50	23	22	0	0	0	1	0
......................................................................................................................TA--------------CTCTGATCTTGGCG-CACTGTA------------CC.............................................	25	2	10.00	20	9	0	0	0	11	0
.......................................................................................................................................TCTGATCTTGGCG-CACTGTA------------CCCATACC.......................................	28	2	5.00	10	5	0	0	0	5	0
..........................TCCAGGAGATTTTGGA--ATGGGCC....................................................................................................................................................................	23	2	4.00	8	2	0	0	0	6	0
..........................TCCAGGAGATTTTGGA--ATGGGCCT...................................................................................................................................................................	24	2	3.00	6	3	0	0	0	3	0
..............................................................TATGTCTTGGTGGACAATATGCGGCAGC.............................................................................................................................	28	2	3.00	6	5	0	0	0	1	0
.........................................................................................................................................TGATCTTGGCG-CACTGTA------------CCCATACCTC.....................................	28	2	2.50	5	1	0	0	0	4	0
............................................................................................TTGTTATGTC-ACCAGTTGGGC.....................................................................................................	21	2	2.50	5	2	2	0	0	1	0
..........................TCCAGGAGATTTTGGA--ATGGGCCTTGT................................................................................................................................................................	27	2	2.00	4	4	0	0	0	0	0
...................................TTTTGGA--ATGGGCCTTGTCCGATC..........................................................................................................................................................	24	1	2.00	2	1	0	0	0	1	0
..............................................................TATGTCTTGGTGGACAATATGCGG.................................................................................................................................	24	2	2.00	4	3	0	0	0	0	1
..............................................................TATGTCTTGGTGGACAATATGCGGC................................................................................................................................	25	2	2.00	4	4	0	0	0	0	0
.......................................................................................................................................TCTGATCTTGGCG-CACTGTA------------CCCATA.........................................	26	2	2.00	4	1	0	0	0	3	0
....................................................................................................................ATTA--------------CTCTGATCTTGGCG-CACTGTA------------CC.............................................	27	1	2.00	2	0	0	0	0	2	0
..........................TCCAGGAGATTTTGGA--ATGGGC.....................................................................................................................................................................	22	2	2.00	4	4	0	0	0	0	0
..........................TCCAGGAGATTTTGGA--ATGGGCCTT..................................................................................................................................................................	25	2	2.00	4	3	0	0	0	1	0
.............................................................TTATGTCTTGGTGGACAATATGCGG.................................................................................................................................	25	2	1.50	3	3	0	0	0	0	0
.............................................................................................TGTTATGTC-ACCAGTTGGGCAGATT................................................................................................	25	2	1.50	3	1	0	0	0	2	0
.......................................................................................................................A--------------CTCTGATCTTGGCG-CACTGTA------------CCCA...........................................	26	2	1.50	3	3	0	0	0	0	0
..................................................................TCTTGGTGGACAATATGCGGCAGCTAT..........................................................................................................................	27	2	1.50	3	2	0	0	0	1	0
...........................CCAGGAGATTTTGGA--ATGGGCCTTG.................................................................................................................................................................	25	2	1.50	3	3	0	0	0	0	0
.....................................TTGGA--ATGGGCCTTGTCCGATCTTATG.....................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................TA--------------CTCTGATCTTGGCG-CACTGTA------------C..............................................	24	2	1.00	2	2	0	0	0	0	0
.......................................................................................................................A--------------CTCTGATCTTGGCG-CACTGTA------------CCC............................................	25	2	1.00	2	2	0	0	0	0	0
......................................................TCCGATCTTATGTCTTGGTGGACAA........................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................ATTA--------------CTCTGATCTTGGCG-CACTGTA------------CCC............................................	28	1	1.00	1	0	0	0	0	1	0
......................................................................................................................TA--------------CTCTGATCTTGGCG-CACTGTA------------CCCATA.........................................	29	2	1.00	2	2	0	0	0	0	0
.......................................................................................................................A--------------CTCTGATCTTGGCG-CACTGT............................................................	21	2	1.00	2	2	0	0	0	0	0
...................................TTTTGGA--ATGGGCCTTGTCCGATCT.........................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................TGTTATGTC-ACCAGTTGGGC.....................................................................................................	20	2	1.00	2	2	0	0	0	0	0
............................................................................................TTGTTATGTC-ACCAGTTGGGCAGATT................................................................................................	26	2	1.00	2	2	0	0	0	0	0
......................................................................................................................TA--------------CTCTGATCTTGGCG-CACTGTA------------...............................................	23	2	1.00	2	2	0	0	0	0	0
.......................................................................................................................A--------------CTCTGATCTTGGCG-CACTGTA------------CC.............................................	24	2	1.00	2	2	0	0	0	0	0
............................................................................................TTGTTATGTC-ACCAGTTGGG......................................................................................................	20	2	1.00	2	1	0	0	0	1	0
.........................................................................................................................................TGATCTTGGCG-CACTGTA------------CCCATACCT......................................	27	2	1.00	2	0	0	0	0	2	0
....................................................................................................................ATTA--------------CTCTGATCTTGGCG-CACTGTA------------CCCC...........................................	29	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................TTA--------------CTCTGATCTTGGCG-CACTGTA------------CCC............................................	27	2	1.00	2	2	0	0	0	0	0
..........................TCCAGGAGATTTTGGA--ATGGGCCC...................................................................................................................................................................	24	2	1.00	2	0	0	0	0	2	0
....................................................................................................................ATTA--------------CTCTGATCTTGGCG-CACTGTA------------C..............................................	26	1	1.00	1	0	0	0	0	1	0
.............................................................TTATGTCTTGGTGGACAATATGCGGC................................................................................................................................	26	2	1.00	2	2	0	0	0	0	0
...........TTCGGGCCAAGGTTGTCCAGGAGATT..................................................................................................................................................................................	26	2	0.50	1	1	0	0	0	0	0
..................................................................TCTTGGTGGACAATATGCGGCAGC.............................................................................................................................	24	2	0.50	1	1	0	0	0	0	0
...........................CCAGGAGATTTTGGA--ATGGGC.....................................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0
............................................................................................TTGTTATGTC-ACCAGTTGGGCAGA..................................................................................................	24	2	0.50	1	1	0	0	0	0	0
.......................................................................................................................................TCTGATCTTGGCG-CACTGTA------------CC.............................................	22	2	0.50	1	0	0	0	0	1	0
.....................................................................................................................TTA--------------CTCTGATCTTGGCG-CACTGTA------------CCCA...........................................	28	2	0.50	1	1	0	0	0	0	0
.....................................................................................................................TTA--------------CTCTGATCTTGGCG-CACTGTA------------C..............................................	25	2	0.50	1	1	0	0	0	0	0
..........................................................................................TATTGTTATGTC-ACCAGTTGG.......................................................................................................	21	2	0.50	1	1	0	0	0	0	0
.............................AGGAGATTTTGGA--ATGGGCCTTG.................................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
........................TGTCCAGGAGATTTTGGA--ATGGGCCTT..................................................................................................................................................................	27	2	0.50	1	1	0	0	0	0	0
..................................................................TCTTGGTGGACAATATGCGGCAGCT............................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
........................TGTCCAGGAGATTTTGGA--ATGGGCCC...................................................................................................................................................................	26	2	0.50	1	0	0	0	0	1	0
..............................................................TATGTCTTGGTGGACAATATGCG..................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
................................................................TGTCTTGGTGGACAATATGCGGCAGCTA...........................................................................................................................	28	2	0.50	1	1	0	0	0	0	0
..........................................................................................................................................GATCTTGGCG-CACTGTA------------CCCATACC.......................................	25	2	0.50	1	1	0	0	0	0	0
CAACTATAAATTTCGGGCCAAG.................................................................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0
......................................................................................................................TA--------------CTCTGATCTTGGCG-CACTGTA------------CCCAT..........................................	28	2	0.50	1	1	0	0	0	0	0
..............................................................................................................................................TTGGCG-CACTGTA------------CCCATACCTCTTGTT................................	28	2	0.50	1	1	0	0	0	0	0
.....................................................................................GCAGCTATTGTTATGTC-ACCAGTTGGG......................................................................................................	27	2	0.50	1	1	0	0	0	0	0
......................................................................................................................TA--------------CTCTGATCTTGGCG-CA................................................................	18	2	0.50	1	1	0	0	0	0	0
..............................................................TATGTCTTGGTGGACAATATGCGGCAG..............................................................................................................................	27	2	0.50	1	1	0	0	0	0	0
......................................................................................................................TA--------------CTCTGATCTTGGCG-CACTGTA------------CCCC...........................................	27	2	0.50	1	1	0	0	0	0	0
..........................................................................................TATTGTTATGTC-ACCAGTTGGGC.....................................................................................................	23	2	0.50	1	1	0	0	0	0	0
...............................................................ATGTCTTGGTGGACAATATGCG..................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0
.....ATAAATTTCGGGCCAAGG................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0
................................................................TGTCTTGGTGGACAATATGCGG.................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0
..........................................................................................TATTGTTATGTC-ACCAGTTGGGCAGA..................................................................................................	26	2	0.50	1	0	0	0	0	0	1
......TAAATTTCGGGCCAAGGT...............................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	1	0
.........................................................................................................................................TGATCTTGGCG-CACTGTA------------CCCATAC........................................	25	2	0.50	1	0	0	0	0	1	0
.........................................................................................................................................TGATCTTGGCG-CACTGTA------------CCCATACC.......................................	26	2	0.50	1	1	0	0	0	0	0
..........................................................................................................................................................................................CTGGCAGTTCAATGTACTTTATACCGC..	27	2	0.50	1	0	0	0	0	1	0
....TATAAATTTCGGGCCAAGGT...............................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0
................................................................TGTCTTGGTGGACAATATGCGGC................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
..........................TCCAGGAGATTTTGGA--ATGGGCCTTGTC...............................................................................................................................................................	28	2	0.50	1	1	0	0	0	0	0
.......................................................................................................................................TCTGATCTTGGCG-CACTGTA------------CCCATACCT......................................	29	2	0.50	1	1	0	0	0	0	0
.......................................................................................................................A--------------CTCTGATCTTGGCG-CACTGTA------------CCCAA..........................................	27	2	0.50	1	1	0	0	0	0	0
....................................................................................................................................................................................................AATGTACTTTATACCGCTT	19	2	0.50	1	1	0	0	0	0	0
.......................................................................................AGCTATTGTTATGTC-ACCAGTTGGG......................................................................................................	25	2	0.50	1	1	0	0	0	0	0
.......................TTGTCCAGGAGATTTTGGA--ATGGGCC....................................................................................................................................................................	26	2	0.50	1	0	0	0	0	1	0
...................................TTTTGGA--ATGGGCCTTGTCCGAT...........................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
....TATAAATTTCGGGCCAAGG................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0
..............................................................TATGTCTTGGTGGACAATATGCGGCA...............................................................................................................................	26	2	0.50	1	1	0	0	0	0	0
.....................................................................................................................TTA--------------CTCTGATCTTGGCG-CACTGTA------------...............................................	24	2	0.50	1	1	0	0	0	0	0
...................................................................CTTGGTGGACAATATGCGGCAGCTAT..........................................................................................................................	26	2	0.50	1	1	0	0	0	0	0
............................CAGGAGATTTTGGA--ATGGGCCTTG.................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0
.............................................................................................TGTTATGTC-ACCAGTTGGGCAGATTA--------------C................................................................................	27	2	0.50	1	1	0	0	0	0	0
......................................................................................................................TA--------------CTCTGATCTTGGCG-CACTGTC------------...............................................	23	2	0.50	1	1	0	0	0	0	0
............................................................................................TTGTTATGTC-ACCAGTTGGGCAGAT.................................................................................................	25	2	0.50	1	1	0	0	0	0	0
..............................................................................................GTTATGTC-ACCAGTTGGGCAGAT.................................................................................................	23	2	0.50	1	1	0	0	0	0	0
..............................................................................................GTTATGTC-ACCAGTTGGGCAGATT................................................................................................	24	2	0.50	1	1	0	0	0	0	0
..................................................................TCTTGGTGGACAATATGCGGC................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0
........AATTTCGGGCCAAGGTTG.............................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0
.....................................................................................................................TTA--------------CTCTGATCTTGGCG-CACTGTA------------CC.............................................	26	2	0.50	1	1	0	0	0	0	0
.......................................................................................................................A--------------CTCTGATCTTGGCG-CACTGTA------------C..............................................	23	2	0.50	1	1	0	0	0	0	0
.............................AGGAGATTTTGGA--ATGGGCCTTGT................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0
..........................TCCAGGAGATTTTGGA--ATGGG......................................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0
...................................TTTTGGA--ATGGGCCTTGTCCGA............................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0
......................................................................................................................................CTCTGATCTTGGCG-CACTGTA------------CCC............................................	24	2	0.50	1	0	0	0	0	1	0
.............................................................TTATGTCTTGGTGGACAATATG....................................................................................................................................	22	3	0.33	1	1	0	0	0	0	0

droGri2

TTGCAATAAATCTATCCCTTGAAGAGTCGTCAGAATTCAAGA--AATGATTTTTAGAGATT----------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_303

scaffold_13269:69455-69539 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-25.4	-24.8	-24.7