ID:

dan_3022

 Coordinate:

scaffold_13340:11075258-11075408 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.4 -15.4 -15.3

Flybase annnotation

exon [dana_GLEANR_19455:7]; CDS [Dana\GF18195-cds]; intron [Dana\GF18195-in]

No Repeatable elements found

mature
star
  1. scaffold_2900:1083-1105 +
  2. scaffold_3688:1022-1044 +
  3. scaffold_3759:920-942 +
  4. scaffold_6155:1039-1061 +
  5. scaffold_7461:341-363 +
  6. scaffold_9126:459-481 +
  7. scaffold_9421:1195-1217 +
  8. scaffold_9662:574-596 +
  9. scaffold_11399:806-828 +
  10. scaffold_12902:225952-225974 +
  11. scaffold_13045:48745-48767 +
  12. scaffold_13047:123337-123359 +
  13. scaffold_13047:130666-130688 +
  14. scaffold_13090:8509-8531 +
  15. scaffold_13099:912758-912780 +
  16. scaffold_13099:1146574-1146596 +
  17. scaffold_13099:1477745-1477767 +
  18. scaffold_13340:11067778-11067800 +
  19. dan_3022  scaffold_13340:11075258-11075280 +
  20. scaffold_13441:5851-5873 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCCGTTAGGGTGCTAGATGCGAGTGTGGGAATGTTTATATTATAAAGACTCAAAAGAGCTTGGTGGCAAGTGCCCAAATAATTGTTTATAATATTCATATAAAATATGGCTTAAACTTCTAGTTAATTTGCCCGCTTTTTGTGTGACTTTCTACTTTGAAGATCATATGTTAATAATTATCCTTTGTCTTCGAAATGCAGAACCTTCCCGCCTACGAAGACATCAAACAACAGGTGCTCGACGCCAACAA
**************************************************........(((((....))))).......................((((((((((...(((...((((...)))).....)))....))))))))))..****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body		 V106
head
 V055
head
......TAGGGTGCTAGATGCGAGTGTGGG............................................................................................................................................................................................................................. 24 0 20 1.25 25 14 7 2 2 0 0
.......................................................................................................................................................................................................................CGAAGACATCAAACAACAGGT............... 21 0 1 1.00 1 0 0 0 1 0 0
.....................................................................................................................................................................................................................TACGAAGACATCAAACAACAGGTGCTC........... 27 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................ATTGGCAGAACCTTCCCGCCTACGAAGA.............................. 28 3 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................ACAACAGGTGCTCGACGCC..... 19 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................TAATTTGCCCGCTTTTTGTGTGACT...................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................................TCCCGCCTACGAAGACATCAAACAACAGG................ 29 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................TACGAAGACATCAAACAACAGGTGCT............ 26 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................CATCAAACAACAGGTGCTCGACGCC..... 25 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................TGCAGAACCTTCCCGCCTACGAAGACATC.......................... 29 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................................CCGCCTACGAAGACATCAAACAACAGG................ 27 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................TTATCCTTTGTCTTCGAAATGCAGAACC.............................................. 28 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................................................................AACAACAGGTGCTCGACGCCA.... 21 0 1 1.00 1 0 0 0 0 1 0
.TCCGTTAGGGTGCTAGATGCGAGT.................................................................................................................................................................................................................................. 24 0 20 0.85 17 0 1 14 2 0 0
......TAGGGTGCTAGATGCGAGTGTGGGAA........................................................................................................................................................................................................................... 26 0 20 0.65 13 7 6 0 0 0 0
......TAGGGTGCTAGATGCGAGTGTG............................................................................................................................................................................................................................... 22 0 20 0.55 11 6 0 5 0 0 0
......TAGGGTGCTAGATGCGAGTGT................................................................................................................................................................................................................................ 21 0 20 0.50 10 0 3 4 3 0 0
...........TGCTAGATGCGAGTGTGGGAATG......................................................................................................................................................................................................................... 23 0 20 0.45 9 9 0 0 0 0 0
TTCCGTTAGGGTGCTAGATGCGAG................................................................................................................................................................................................................................... 24 0 20 0.45 9 2 5 2 0 0 0
...........................................TAAAGACTCAAAAGAGCTTGGTGGCAAG.................................................................................................................................................................................... 28 0 20 0.30 6 5 0 0 1 0 0
.TCCGTTAGGGTGCTAGATGCGAG................................................................................................................................................................................................................................... 23 0 20 0.25 5 4 1 0 0 0 0
...........................................TAAAGACTCAAAAGAGCTTGGTGG........................................................................................................................................................................................ 24 0 20 0.25 5 4 0 0 1 0 0
...........................................TAAAGACTCAAAAGAGCTTGGTGGC....................................................................................................................................................................................... 25 0 20 0.25 5 0 3 2 0 0 0
.........................................TATAAAGACTCAAAAGAGCTTGGTGG........................................................................................................................................................................................ 26 0 20 0.20 4 1 3 0 0 0 0
.........................................TATAAAGACTCAAAAGAGCTTGGTG......................................................................................................................................................................................... 25 0 20 0.20 4 2 0 2 0 0 0
TTCCGTTAGGGTGCTAGATGCGAGT.................................................................................................................................................................................................................................. 25 0 20 0.20 4 1 0 3 0 0 0
.TCCGTTAGGGTGCTAGATGCGAGTGT................................................................................................................................................................................................................................ 26 0 20 0.20 4 1 1 1 1 0 0
...........TGCTAGATGCGAGTGTGGGAA........................................................................................................................................................................................................................... 21 0 20 0.15 3 1 1 1 0 0 0
.....TTAGGGTGCTAGATGCGAGTGTGG.............................................................................................................................................................................................................................. 24 0 20 0.15 3 0 3 0 0 0 0
...........TGCTAGATGCGAGTGTGGGAAT.......................................................................................................................................................................................................................... 22 0 20 0.15 3 1 2 0 0 0 0
...............................................GACTCAAAAGAGCTTGGTGG........................................................................................................................................................................................ 20 0 20 0.15 3 3 0 0 0 0 0
.......AGGGTGCTAGATGCGAGTGTGG.............................................................................................................................................................................................................................. 22 0 20 0.15 3 3 0 0 0 0 0
.................................................................................................................................................................................................................CGCCTACGATGACATACAAC...................... 20 3 7 0.14 1 0 1 0 0 0 0
..............TAGATGCGAGTGTGGGAATGT........................................................................................................................................................................................................................ 21 0 20 0.10 2 1 1 0 0 0 0
......TAGGGTGCTAGATGCGAGTGTGGGA............................................................................................................................................................................................................................ 25 0 20 0.10 2 0 0 2 0 0 0
...........TGCTAGATGCGAGTGTGGGAATGTTTA..................................................................................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0 0
.........................................................................................................TATGGCTTAAACTTCTAGTTAATTTG........................................................................................................................ 26 0 20 0.10 2 0 0 2 0 0 0
......TAGGGTGCTAGATGCGAGTGTGGGAAT.......................................................................................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0 0
...CGTTAGGGTGCTAGATGCGAGTGT................................................................................................................................................................................................................................ 24 0 20 0.10 2 1 0 0 1 0 0
......TAGGGTGCTAGATGCGAGTGTGT.............................................................................................................................................................................................................................. 23 1 20 0.10 2 0 2 0 0 0 0
........GGGTGCTAGATGCGAGTGTGG.............................................................................................................................................................................................................................. 21 0 20 0.10 2 2 0 0 0 0 0
...........TGCTAGATGCGAGTGTGGG............................................................................................................................................................................................................................. 19 0 20 0.10 2 2 0 0 0 0 0
...........................................................................................................................................................................TAATAATTATCCGTTGTA.............................................................. 18 2 17 0.06 1 0 0 1 0 0 0
...CGTTAGGGTGCTAGATGCGAGTGTGG.............................................................................................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0
......................................TATTATAAAGACTCAAAAGAGCTTGGT.......................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 1 0
......TGGGGTGCTAGATGCGAGTGC................................................................................................................................................................................................................................ 21 2 20 0.05 1 0 1 0 0 0 0
.TCCGTTAGGGTGCTAGATGCGAGTGTGG.............................................................................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................TAAAATATGGCTTAAACTTCTAGT............................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
..................................................TCAAAAGAGCTTGGTGGCAAGTG.................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 1 0 0
........................................TTATAAAGACTCAAAAGAGCTTGGTGG........................................................................................................................................................................................ 27 0 20 0.05 1 0 1 0 0 0 0
............GCTAGATGCGAGTGTGGGAATGT........................................................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0
............................................AAAGACTCAAAAGAGCTTGGT.......................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
..............TAGATGCGAGTGTGGGAATGTTTATAT.................................................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0
TTCCGTTAGGGTGCTAGATTCGAGTGT................................................................................................................................................................................................................................ 27 1 20 0.05 1 0 0 0 0 1 0
...............................................GACTCAAAAGAGCTTGGTGGCAAGTG.................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
......TAGGGTGCTAGATGCGAGTGTGG.............................................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 0 1
......TAGGGTGCAAGATGCGAGTGTGGGAA........................................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
......TAGGGTTCTAGATGCGAGTGTGGGAA........................................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
......................................TATTATAAAGACTCAAAAGAGCTTGGTG......................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
......TCAGGTGCTAGATGCTAGTGTGG.............................................................................................................................................................................................................................. 23 3 20 0.05 1 0 0 1 0 0 0
...........................................TAAAGACTCAAAAGAGCTTGGTGGCA...................................................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0 0
.......................................................................................................AATACGGTTTAAACTTCTA................................................................................................................................. 19 2 20 0.05 1 0 0 1 0 0 0
..............TAGATGCGAGTGTGGGAATG......................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0 0
............................................AAAGACTCAAAAGAGCTTGGTGGC....................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 1 0
...................................................CCAAAGAGCTTGGTGGCAAGT................................................................................................................................................................................... 21 1 20 0.05 1 0 0 0 0 0 1
........................................CTATAAAGACTCAAAAGAGCTTGGTG......................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
......TATGGTGCTAGATGCGAGTGTGCG............................................................................................................................................................................................................................. 24 2 20 0.05 1 0 0 1 0 0 0
.....................................................AAAGAGCTTGGTGGCAAGTGC................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 1 0
..CCGTTAGGGTGCTAGATGCGA.................................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0
....GTTAGGGTACTAGATGCGAGTGTGG.............................................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
...........TGCTAGATGCGAGTGTGGGAATGTT....................................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0
.............................................AAGACTCAAAAGAGCTTGGTGGCAAG.................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.....................................................AAAGAGCTTGGTGGAGAGTGT................................................................................................................................................................................. 21 3 20 0.05 1 0 0 1 0 0 0
...........TGCTAGATGCGAGTGTGGGAATGTTTAA.................................................................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
...............................................GACTCAAAAGAGCTTGGTGGCAAATGCCC............................................................................................................................................................................... 29 1 20 0.05 1 0 1 0 0 0 0
..................TGCGAGTGTGGGAATGTTTATATTATA.............................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0
..................................................TCAAAAGAGCTTGGTGGCAAGTGCC................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
...........TGCTAGATGCGAGTGTTG.............................................................................................................................................................................................................................. 18 1 20 0.05 1 0 0 1 0 0 0
..............TAGATGCGAGTGTGGGAATGTTTT..................................................................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
..........................................ATAAAGACTCAAAAGAGCTTGGTGG........................................................................................................................................................................................ 25 0 20 0.05 1 0 0 0 1 0 0
..CCGTTAGGGTGCTAGATGCGAGTGTG............................................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
...........TGCTAGATGCGAGTGCGGGAATGT........................................................................................................................................................................................................................ 24 1 20 0.05 1 0 0 1 0 0 0
..........................................ATAAAGACTCAAAAGAGCTTGGTGGC....................................................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0 0
.........GGTGCTAGATGCGAGTGTGGGAATG......................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
TTCCGTTAGGGGGCTAGATGCGAGT.................................................................................................................................................................................................................................. 25 1 20 0.05 1 0 0 1 0 0 0
..................................................TCAAAAGAGCTTGGTGGCAAG.................................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0
.............CTAGATGCGAGTGTGGGAATG......................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0
.TCCGTTAGGGTACTAGATGCTAGAGTG............................................................................................................................................................................................................................... 27 3 20 0.05 1 0 0 0 1 0 0
...............................................................................................TCATATAAAATATGGCTTAAACTTCTAGT............................................................................................................................... 29 0 20 0.05 1 0 1 0 0 0 0
............................................AAAGACTCAAAAGAGCTTGGTGGCAAG.................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
.....TGAGGGTGCTAGATGCGAGTGTG............................................................................................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
................................TTTGTATATTATAAAGACTCAAAAGA................................................................................................................................................................................................. 26 2 20 0.05 1 0 1 0 0 0 0
..........GTGCTAGATGCGAGTGTGGGAAT.......................................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0
........................................TTATAAAGACTCAAAAGAGCTTGG........................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
CTCCGTTAGGGTGCTAGATGCGAGTGC................................................................................................................................................................................................................................ 27 2 20 0.05 1 0 1 0 0 0 0
.............CTAGATGCGAGTGTGGGAA........................................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 1 0 0
............GCTAGATGCGAGTGTGGGAAT.......................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0
.....................................ATATTATAAAGACTCAAAAGAGCTTGG........................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
...........TGCTAGATGCGAGTGTGGGAATGTTTAT.................................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
.......GGGGTGCTAGATGCGAGTGTG............................................................................................................................................................................................................................... 21 1 20 0.05 1 0 0 0 1 0 0
..............TAGATGCGAGTGTGGGAATGTT....................................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
................................................ACTCAAAAGAGCTTGGTGGCAAGT................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0
...............................................GACTCAAAAGAGCTTGGTGGCAAGT................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0
....................................................................................................TAAAATATGGCTTAAACTTCTAGTT.............................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0
..CCGTTAGGGTGCTAGATGCGAGTGT................................................................................................................................................................................................................................ 25 0 20 0.05 1 0 1 0 0 0 0
....GTTAGGGTGCTAGATGCGAGT.................................................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 1 0
...................................................CAAAAGAGCTTGGTGGCAAGT................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0
.......................................................................................TATAATATTCATATAAAATATGGCT........................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
.................................GTTTATATTATAAAGACTCAAAAGAGA............................................................................................................................................................................................... 27 1 20 0.05 1 0 0 0 1 0 0
.TCCGTTAGGGTGCTAGATGCGAGTGC................................................................................................................................................................................................................................ 26 1 20 0.05 1 0 1 0 0 0 0
.........................................TATAAAGACTCAAAAGAGCTTACTGG........................................................................................................................................................................................ 26 2 20 0.05 1 0 0 1 0 0 0
......TAGGGTGCTAGATTCGAGTGTGG.............................................................................................................................................................................................................................. 23 1 20 0.05 1 0 1 0 0 0 0
....GTTAGGGTGCTAGATGCGAGTGT................................................................................................................................................................................................................................ 23 0 20 0.05 1 0 0 0 1 0 0
........................................................................................................ATATGGTTTAAACTTCTA................................................................................................................................. 18 1 20 0.05 1 0 0 1 0 0 0
.....TTAGGGTGCTAGATGCGAGTGTGGGA............................................................................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0
..........GTGCTAGATGCGAGTGTGGGAATGTT....................................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................ATTCATATAAAATATGGCTTAAACT..................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
...........................................TGAAGACTCAAAAGAGCTTGGTGGT....................................................................................................................................................................................... 25 2 20 0.05 1 0 1 0 0 0 0
......TAGGGTGCTAGATGCGCGTGTGGG............................................................................................................................................................................................................................. 24 1 20 0.05 1 0 0 1 0 0 0
...............................................GACTCAAAAGAGCTTGGTGGCAAGTGC................................................................................................................................................................................. 27 0 20 0.05 1 0 0 1 0 0 0
.........................................TATAAAGACTCAAAAGAGCTTGGTGGC....................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
......TAGGGTTCTAGATGCGAGTG................................................................................................................................................................................................................................. 20 1 20 0.05 1 0 1 0 0 0 0
...................................................................CAAGTGCCCAAATAATTGT..................................................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0
..............TGGATGCGAGTGTGGGAA........................................................................................................................................................................................................................... 18 1 20 0.05 1 0 1 0 0 0 0
.....TTAGGGTGCTAGATGCGAGT.................................................................................................................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 1 0
................................TGTTTATATTATAAAGACTCAAAAGAGC............................................................................................................................................................................................... 28 0 20 0.05 1 0 0 1 0 0 0
TTCCGTTAGGGTGCTAGATGCGAGTGT................................................................................................................................................................................................................................ 27 0 20 0.05 1 0 1 0 0 0 0
.................................................CTCAAAAGAGCTTGGTGGCAAGTGCCCA.............................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0
.....................................................AAAGAGCTTGGTGGCAAGTGCCCAAAT........................................................................................................................................................................... 27 0 20 0.05 1 0 0 1 0 0 0
...............................................................................................TCATATAAAATATGGCTTAAACTTC................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
....GTTAGGGTGCTAGATGCGAGTGTG............................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

AAGGCAATCCCACGATCTACGCTCACACCCTTACAAATATAATATTTCTGAGTTTTCTCGAACCACCGTTCACGGGTTTATTAACAAATATTATAAGTATATTTTATACCGAATTTGAAGATCAATTAAACGGGCGAAAAACACACTGAAAGATGAAACTTCTAGTATACAATTATTAATAGGAAACAGAAGCTTTACGTCTTGGAAGGGCGGATGCTTCTGTAGTTTGTTGTCCACGAGCTGCGGTTGTT
******************************************************************************************************........(((((....))))).......................((((((((((...(((...((((...)))).....)))....))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M058
embryo
 V039
embryo
 M044
female body
 V055
head
.................................................................................................................................................................................................................GCGGATGCTTCTGCAGTTTG...................... 20 1 1 1.00 1 1 0 0 0 0
................................................................................................................................................................TCTAGTAGACAATTAGTAA........................................................................ 19 2 2 0.50 1 0 0 1 0 0
..............................................................CCACCGTTCACGGGTTTATTAACAAAT.................................................................................................................................................................. 27 0 20 0.20 4 0 4 0 0 0
.AGGCAATCCCACGATCTACGCTC................................................................................................................................................................................................................................... 23 0 20 0.20 4 0 3 0 1 0
.........CCACGATCTACGCTCACACCCTTACAA....................................................................................................................................................................................................................... 27 0 20 0.20 4 0 4 0 0 0
......................................................................CACGGGTTTATTAACAAATATTATAAGT......................................................................................................................................................... 28 0 20 0.10 2 0 2 0 0 0
....................................................................................................................................................................GTATACCATTAGTAATAG..................................................................... 18 2 17 0.06 1 0 0 0 0 1
..................ACGCTCACACCCTTACAAATATAATATT............................................................................................................................................................................................................. 28 0 20 0.05 1 0 1 0 0 0
..................................................AGTTTTCTCGAACCACCGTTAACGGGTTT............................................................................................................................................................................ 29 1 20 0.05 1 0 0 0 1 0
..............................................................CCACCGTTCACGGGTTTA........................................................................................................................................................................... 18 0 20 0.05 1 0 1 0 0 0
...............TCTACGCTCACACCCTTACAAATAT................................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0
.......................................................................................................................GATCAATTAAAGGGGCACA................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1
AAGGCAATCCCACGATCTACGCTCACCA............................................................................................................................................................................................................................... 28 2 20 0.05 1 0 0 0 1 0
.....................................................................TCACGGGTTTATTAACAAATATTAT............................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
.AGGCAATCCCACGATCTACGCTCACACC.............................................................................................................................................................................................................................. 28 0 20 0.05 1 0 1 0 0 0
.......................................................................ACGGGGTTATTAACAAATAT................................................................................................................................................................ 20 1 20 0.05 1 1 0 0 0 0
...........ACGATCTACGCTCACACCCTT........................................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
........CCCACGATCTACGCTCACACC.............................................................................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0
............CGATCTACGCTCACACCCTTACAAATA.................................................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 1 0
.........................................................TCGAACCACCGTTCACGGGTTTA........................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
....................GCTCACACCCTTACAAATATA.................................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 1
AAGGCAATCCCACGATCTACGCTC................................................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
....................................ACTTAATATGTCTGAGTTTT................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0
.....................................................................TCACGGGTTTATTAACAAATATTATAAG.......................................................................................................................................................... 28 0 20 0.05 1 0 0 0 1 0
.............GATCTACGCTCACACCCTTACAAATAT................................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
............CGATCTACGCTCACACCCTTACAAATAT................................................................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 1 0
........CCCACGATCTACGCTCACGC............................................................................................................................................................................................................................... 20 1 20 0.05 1 0 1 0 0 0
.............GATCTACGCTCACACCCTTACAAATATAA................................................................................................................................................................................................................. 29 0 20 0.05 1 0 1 0 0 0
..........................................................CGAACCACCGTTCACGGGTTTATT......................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:11075208-11075458 + dan_3022 TTCCG-TTA---GGGTGCTAGATGCGAGTGTGGGAATGTTTATATTATAAAGACTCAAAAGAGCTTG------GTGGCAAG---------------------TGCCC-AAAT-AATTGTTT-ATAATATTCAT-ATAAAATAT--GGCTTAAACTTCTAGTTAATTTGCCCGCTTTTTGTGTGACTTTCTACTTTGAAGATCATATGTTAATA-A---TTATCC-TTTGTC-TTCGAAATGCAGAACCTTCCCGCCTACGAAGACATCAAACAACAGGTGCTCGACGCCAACAA
droBip1 scf7180000391364:410-556 + TGCCG-TTT---ATGTTGTAGGTGCGAGTGTGGGGATAAATGT---GTAAGAGCTCGTGGGAACTCACTGCTCGTGGGAAG---------------------TGCAG-AAAT-AATTGTTT-ATAATATTAAT-A-------T--AGATTAAACTTCTAGTTAATTTGTATGCA---TGT-------------------------------------------------------------------------------------------------------GTAACTATGTA
droKik1 scf7180000302707:124577-124732 + TAG--ACTACTAATACATTTGCAT-----------------------------------------------------CATGCTTTATTACGTCAAATCGTTCTGCAA-AAAC-AAATGTTT-AAAA-------TTGCTTTAACTTTGACC---------------------------------------------------------------A--------TC-TTTTTCGA-CCATCTACAGACACTGCAATCCTACGAAGACGTCAAACAGAAGGTTTTGGATGCCAACAA
droFic1 scf7180000452349:14830-14948 + CGCCG-TTT---GTTTATTGGGTGCGAGTGTGGGAATGTTTATATGATAAGAACTTGTGGGAACTCG------GTAGCAAGCTT------------------TGTCAAAAATAAATTGTTT-ACAATATTTAT--------------------------------------------------------------------------------------------------------------------------------------------------TAAAGGTATAGATTA
droEle1 scf7180000490640:273978-274112 + CAC--GTTT---GTTTATTGGGTACGAGTGTGAGAATGTTTATGCGATAAGAACTTGTGAAAACTCA------GCAGAAAGGTT------------------TGGCA-AAATAAATTGTTT-ACATTATTAAT-AGGAACAAT--GGATTAAAGTTTTAGTTAATTTAC-----------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000764685:97-273 - CGCCG-TTT--------------GCGAGGGTGGAAATGTTTATAAGATAAGAACCCGTGAGAACTCA------GTAGCAAGCTC------------------TGCCA-AAATAAATTGTTT-ACAATATTAAT-TAGAATATT--TAATTAAAGTTATAGTTAATTTGTATATA---CGT--G--TGTACATTTGGGTGTACATATGTAAATT-AACTTTC-TCCTTTG----------------------------------------------------------------T
droBia1 scf7180000301321:2503-2650 + CGCCG-TTT---GTTTATTAGGGGCGAGTGTGGG-ATGTTTATATGATACGAACTTCTGAGAACTCG------GTAGAAATCTT------------------TGCCA-AAATAAAATGTTT-ACAATATTAAT----------------TAAAGGTATAGATAATT--------------------------------------------------------------------------------CTCCCCCTCCTAAGATGAATTATTACATT-------------------
droTak1 scf7180000414515:10301-10381 - ATGT-------------------------------------------------------------------------------------------------------------------TT-ACAATA----------------------------------------------------------------------------------------------TT-TTTTGT-A-TAATCTGCAGAACCTGCCCTCCTATGAAGACATAAGACGAAATGTTAATGATGCCAACAA
droEug1 scf7180000409781:15625-15679 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAACTTGCCCTCCTATGAAGACATAAAGCGAAGTGTTTTTGATGCCAACAA
dm3 chr3R:66576-66649 + TTA--A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-CTTTTC-TTGGTCTCGTAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGATGCCAACAA
droSim2 3r:59217-59289 + TTA--A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-CTTTTC-T-TGGTCCGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGATGCCAACAA
droSec2 scaffold_6:193488-193560 + TTA--A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-CTTTTC-T-TGGTCCGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGATGCCAACAA
droYak3 3R:428710-428858 + ATT--ACTA---ATAATCTTGGCC-----------------------------------------------------TATGCTTTTAAATGTGCAGTTGCTACATG-A--AA--GATTTAT-ATAA-------TTTCTAATAATTTTAAC---------------------------------------------------------------A--------CT-TTTTTC-T-TGACGCGCAGAACCAGCCTAGCTATGAAGACATGAAGCAACTTATTATTGATGCCAACAA
droEre2 scaffold_4770:424921-425045 + TTTTA-----------------------------------------------------------------------------------ATGTAAAGTTGCTACGTA-A--AA--GATTTAT-ACAA-------TTTCTAAGAATTTTTAC---------------------------------------------------------------A--------CT-CTTGTC-TTGGACTTGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTCATTATTGATGCCAACAA
dp5 2:24855429-24855483 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGACATTGCCTTCCTACGAGGACGTCAAGCAGCAAGTGCTTGATGCTAACAA
droPer2 scaffold_6:154749-154819 - TTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-TTCGC----CCATCTACAGACATTGCCTTCCTACGAGGACGTCAAGCAGCAAGTGCTTGATGCTAACAA
droWil2 scf2_1100000004921:1440583-1440672 - TACT--CTA-----------------------------------------------------------------------------------------------------AT-AATTGTTT-CTC-------------------------------------------------------------------------------------------------TCTTTTG-CTT-CAATCAACAGAGTCTACCATCGTACGAGGACATTAAGCGACAGGTGCTTGATGCCAACAA
droVir3 scaffold_12822:1352848-1352928 + ACACT-TTA---TTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-TTCGCT-T-TTCATCACAGACCCTGCCCTCCTATGAGGACATCAAACGCCAGATTATGGATGCCAATAA
droMoj3 scaffold_6540:33967223-33967277 + T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGACCCTGCCTTCCTATGAGGACATCAAACGTCAGGTTCTGGATGCCAACAA
droGri2 scaffold_15074:2523975-2524126 - AAT--ATTC---ACATT-----------------------------ATTCA----------------CCACTCAATT----------------AACTTGCAACACA-C--AT-CATTGATTCACATTTTAAAT-TGAAACTATTTTAATG---------------------------------------------------------------AA---TTA--T-TTTAAT-T-GCATTCTTAGAATCTGCCTTCATATGAGGACATCAAACGCCAGGTTCTGGATGCTAACAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTCCG-TTA---GGGTGCTAGATGCGAGTGTGGGAATGTTTATATTATAAAGACTCAAAAGAGCTTG------GTGGCAAG---------------------TGCCC-AAAT-AATTGTTT-ATAATATTCAT-ATAAAATAT--GGCTTAAACTTCTAGTTAATTTGCCCGCTTTTTGTGTGACTTTCTACTTTGAAGATCATATGTTAATA-A---TTATCC-TTTGTC-TTCGAAATGCAGAACCTTCCCGCCTACGAAGACATCAAACAACAGGTGCTCGACGCCAACAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......TA---GGGTGCTAGATGCGAGTGTGGG....................................................................................................................................................................................................................................................................24201.25251472020
..................................................................................................................................................................................................................................................................CGAAGACATCAAACAACAGGT...............2111.001000010
................................................................................................................................................................................................................................................................TACGAAGACATCAAACAACAGGTGCTC...........2711.001100000
..............................................................................................................................................................................................................................................................................ACAACAGGTGCTCGACGCC.....1911.001100000
.................................................................................................................................................................TAATTTGCCCGCTTTTTGTGTGACT............................................................................................................2511.001010000
.........................................................................................................................................................................................................................................................TCCCGCCTACGAAGACATCAAACAACAGG................2911.001100000
................................................................................................................................................................................................................................................................TACGAAGACATCAAACAACAGGTGCT............2611.001001000
........................................................................................................................................................................................................................................................................CATCAAACAACAGGTGCTCGACGCC.....2511.001010000
...............................................................................................................................................................................................................................................TGCAGAACCTTCCCGCCTACGAAGACATC..........................2911.001010000
...........................................................................................................................................................................................................................................................CCGCCTACGAAGACATCAAACAACAGG................2711.001100000
..........................................................................................................................................................................................................................TTATCC-TTTGTC-TTCGAAATGCAGAACC..............................................2811.001010000
.............................................................................................................................................................................................................................................................................AACAACAGGTGCTCGACGCCA....2111.001000001
.TCCG-TTA---GGGTGCTAGATGCGAGT.........................................................................................................................................................................................................................................................................24200.85170114020
.......TA---GGGTGCTAGATGCGAGTGTGGGAA..................................................................................................................................................................................................................................................................26200.6513760000
.......TA---GGGTGCTAGATGCGAGTGTG......................................................................................................................................................................................................................................................................22200.5511605000
.......TA---GGGTGCTAGATGCGAGTGT.......................................................................................................................................................................................................................................................................21200.5010034030
...............TGCTAGATGCGAGTGTGGGAATG................................................................................................................................................................................................................................................................23200.459900000
TTCCG-TTA---GGGTGCTAGATGCGAG..........................................................................................................................................................................................................................................................................24200.459252000
...............................................TAAAGACTCAAAAGAGCTTG------GTGGCAAG---------------------................................................................................................................................................................................................28200.306500010
.TCCG-TTA---GGGTGCTAGATGCGAG..........................................................................................................................................................................................................................................................................23200.255410000
...............................................TAAAGACTCAAAAGAGCTTG------GTGG.........................................................................................................................................................................................................................24200.255400010
...............................................TAAAGACTCAAAAGAGCTTG------GTGGC........................................................................................................................................................................................................................25200.255032000
.............................................TATAAAGACTCAAAAGAGCTTG------GTGG.........................................................................................................................................................................................................................26200.204130000
.............................................TATAAAGACTCAAAAGAGCTTG------GTG..........................................................................................................................................................................................................................25200.204202000
TTCCG-TTA---GGGTGCTAGATGCGAGT.........................................................................................................................................................................................................................................................................25200.204103000
.TCCG-TTA---GGGTGCTAGATGCGAGTGT.......................................................................................................................................................................................................................................................................26200.204111010
...............TGCTAGATGCGAGTGTGGGAA..................................................................................................................................................................................................................................................................21200.153111000
......TTA---GGGTGCTAGATGCGAGTGTGG.....................................................................................................................................................................................................................................................................24200.153030000
...............TGCTAGATGCGAGTGTGGGAAT.................................................................................................................................................................................................................................................................22200.153120000
...................................................GACTCAAAAGAGCTTG------GTGG.........................................................................................................................................................................................................................20200.153300000
........A---GGGTGCTAGATGCGAGTGTGG.....................................................................................................................................................................................................................................................................22200.153300000
..................TAGATGCGAGTGTGGGAATGT...............................................................................................................................................................................................................................................................21200.102110000
.......TA---GGGTGCTAGATGCGAGTGTGGGA...................................................................................................................................................................................................................................................................25200.102002000
...............TGCTAGATGCGAGTGTGGGAATGTTTA............................................................................................................................................................................................................................................................27200.102200000
............................................................................................................................................TAT--GGCTTAAACTTCTAGTTAATTTG..............................................................................................................................26200.102002000
.......TA---GGGTGCTAGATGCGAGTGTGGGAAT.................................................................................................................................................................................................................................................................27200.102200000
...CG-TTA---GGGTGCTAGATGCGAGTGT.......................................................................................................................................................................................................................................................................24200.102100010
.......TA---GGGTGCTAGATGCGAGTGTGT.....................................................................................................................................................................................................................................................................23200.102020000
............GGGTGCTAGATGCGAGTGTGG.....................................................................................................................................................................................................................................................................21200.102200000
...............TGCTAGATGCGAGTGTGGG....................................................................................................................................................................................................................................................................19200.102200000
...CG-TTA---GGGTGCTAGATGCGAGTGTGG.....................................................................................................................................................................................................................................................................26200.051010000
..........................................TATTATAAAGACTCAAAAGAGCTTG------GT...........................................................................................................................................................................................................................27200.051000001
.TCCG-TTA---GGGTGCTAGATGCGAGTGTGG.....................................................................................................................................................................................................................................................................28200.051100000
.......................................................................................................................................TAAAATAT--GGCTTAAACTTCTAGT.....................................................................................................................................24200.051010000
......................................................TCAAAAGAGCTTG------GTGGCAAG---------------------TG..............................................................................................................................................................................................23200.051000010
............................................TTATAAAGACTCAAAAGAGCTTG------GTGG.........................................................................................................................................................................................................................27200.051010000
................GCTAGATGCGAGTGTGGGAATGT...............................................................................................................................................................................................................................................................23200.051100000
................................................AAAGACTCAAAAGAGCTTG------GT...........................................................................................................................................................................................................................21200.051100000
..................TAGATGCGAGTGTGGGAATGTTTATAT.........................................................................................................................................................................................................................................................27200.051010000
...................................................GACTCAAAAGAGCTTG------GTGGCAAG---------------------TG..............................................................................................................................................................................................26200.051100000
.......TA---GGGTGCTAGATGCGAGTGTGG.....................................................................................................................................................................................................................................................................23200.051000100
..........................................TATTATAAAGACTCAAAAGAGCTTG------GTG..........................................................................................................................................................................................................................28200.051100000
...............................................TAAAGACTCAAAAGAGCTTG------GTGGCA.......................................................................................................................................................................................................................26200.051001000
..................TAGATGCGAGTGTGGGAATG................................................................................................................................................................................................................................................................20200.051000010
................................................AAAGACTCAAAAGAGCTTG------GTGGC........................................................................................................................................................................................................................24200.051000001
.........................................................AAAGAGCTTG------GTGGCAAG---------------------TGC.............................................................................................................................................................................................21200.051000001
..CCG-TTA---GGGTGCTAGATGCGA...........................................................................................................................................................................................................................................................................21200.051000010
...............TGCTAGATGCGAGTGTGGGAATGTT..............................................................................................................................................................................................................................................................25200.051000001
.................................................AAGACTCAAAAGAGCTTG------GTGGCAAG---------------------................................................................................................................................................................................................26200.051100000
...............TGCTAGATGCGAGTGTGGGAATGTTTAA...........................................................................................................................................................................................................................................................28200.051100000
......................TGCGAGTGTGGGAATGTTTATATTATA.....................................................................................................................................................................................................................................................27200.051100000
......................................................TCAAAAGAGCTTG------GTGGCAAG---------------------TGCC............................................................................................................................................................................................25200.051100000
..................TAGATGCGAGTGTGGGAATGTTTT............................................................................................................................................................................................................................................................24200.051100000
..............................................ATAAAGACTCAAAAGAGCTTG------GTGG.........................................................................................................................................................................................................................25200.051000010
..CCG-TTA---GGGTGCTAGATGCGAGTGTG......................................................................................................................................................................................................................................................................26200.051100000
..............................................ATAAAGACTCAAAAGAGCTTG------GTGGC........................................................................................................................................................................................................................26200.051001000
.............GGTGCTAGATGCGAGTGTGGGAATG................................................................................................................................................................................................................................................................25200.051100000
......................................................TCAAAAGAGCTTG------GTGGCAAG---------------------................................................................................................................................................................................................21200.051001000
.................CTAGATGCGAGTGTGGGAATG................................................................................................................................................................................................................................................................21200.051000010
.................................................................................................................................TCAT-ATAAAATAT--GGCTTAAACTTCTAGT.....................................................................................................................................29200.051010000
................................................AAAGACTCAAAAGAGCTTG------GTGGCAAG---------------------................................................................................................................................................................................................27200.051100000
..............GTGCTAGATGCGAGTGTGGGAAT.................................................................................................................................................................................................................................................................23200.051000010
............................................TTATAAAGACTCAAAAGAGCTTG------G............................................................................................................................................................................................................................24200.051100000
.................CTAGATGCGAGTGTGGGAA..................................................................................................................................................................................................................................................................19200.051000010
................GCTAGATGCGAGTGTGGGAAT.................................................................................................................................................................................................................................................................21200.051000001
.........................................ATATTATAAAGACTCAAAAGAGCTTG------G............................................................................................................................................................................................................................27200.051100000
...............TGCTAGATGCGAGTGTGGGAATGTTTAT...........................................................................................................................................................................................................................................................28200.051100000
..................TAGATGCGAGTGTGGGAATGTT..............................................................................................................................................................................................................................................................22200.051010000
....................................................ACTCAAAAGAGCTTG------GTGGCAAG---------------------T...............................................................................................................................................................................................24200.051000010
...................................................GACTCAAAAGAGCTTG------GTGGCAAG---------------------T...............................................................................................................................................................................................25200.051000001
.......................................................................................................................................TAAAATAT--GGCTTAAACTTCTAGTT....................................................................................................................................25200.051010000
..CCG-TTA---GGGTGCTAGATGCGAGTGT.......................................................................................................................................................................................................................................................................25200.051010000
....G-TTA---GGGTGCTAGATGCGAGT.........................................................................................................................................................................................................................................................................21200.051000001
.......................................................CAAAAGAGCTTG------GTGGCAAG---------------------T...............................................................................................................................................................................................21200.051000010
........................................................................................................................T-ATAATATTCAT-ATAAAATAT--GGCT.................................................................................................................................................25200.051010000
.....................................GTTTATATTATAAAGACTCAAAAGAGA......................................................................................................................................................................................................................................27200.051000010
.TCCG-TTA---GGGTGCTAGATGCGAGTGC.......................................................................................................................................................................................................................................................................26200.051010000
....G-TTA---GGGTGCTAGATGCGAGTGT.......................................................................................................................................................................................................................................................................23200.051000010
......TTA---GGGTGCTAGATGCGAGTGTGGGA...................................................................................................................................................................................................................................................................26200.051010000
..............GTGCTAGATGCGAGTGTGGGAATGTT..............................................................................................................................................................................................................................................................26200.051100000
...............................................................................................................................ATTCAT-ATAAAATAT--GGCTTAAACT...........................................................................................................................................25200.051010000
...................................................GACTCAAAAGAGCTTG------GTGGCAAG---------------------TGC.............................................................................................................................................................................................27200.051001000
.............................................TATAAAGACTCAAAAGAGCTTG------GTGGC........................................................................................................................................................................................................................27200.051100000
.............................................................................CAAG---------------------TGCCC-AAAT-AATTGT...............................................................................................................................................................................19200.051001000
......TTA---GGGTGCTAGATGCGAGT.........................................................................................................................................................................................................................................................................20200.051000001
....................................TGTTTATATTATAAAGACTCAAAAGAGC......................................................................................................................................................................................................................................28200.051001000
TTCCG-TTA---GGGTGCTAGATGCGAGTGT.......................................................................................................................................................................................................................................................................27200.051010000
.....................................................CTCAAAAGAGCTTG------GTGGCAAG---------------------TGCCC-A.........................................................................................................................................................................................28200.051100000
.........................................................AAAGAGCTTG------GTGGCAAG---------------------TGCCC-AAAT-.....................................................................................................................................................................................27200.051001000
.................................................................................................................................TCAT-ATAAAATAT--GGCTTAAACTTC.........................................................................................................................................25200.051100000
....G-TTA---GGGTGCTAGATGCGAGTGTG......................................................................................................................................................................................................................................................................24200.051100000
droBip1
TGCCG-TTT---ATGTTGTAGGTGCGAGTGTGGGGATAAATGT---GTAAGAGCTCGTGGGAACTCACTGCTCGTGGGAAG---------------------TGCAG-AAAT-AATTGTTT-ATAATATTAAT-A-------T--AGATTAAACTTCTAGTTAATTTGTATGCA---TGT-------------------------------------------------------------------------------------------------------GTAACTATGTASizeHit CountTotal NormTotal
No Reads
droKik1
TAG--ACTACTAATACATTTGCAT-----------------------------------------------------CATGCTTTATTACGTCAAATCGTTCTGCAA-AAAC-AAATGTTT-AAAA-------TTGCTTTAACTTTGACC---------------------------------------------------------------A--------TC-TTTTTCGA-CCATCTACAGACACTGCAATCCTACGAAGACGTCAAACAGAAGGTTTTGGATGCCAACAASizeHit CountTotal NormTotal
No Reads
droFic1
CGCCG-TTT---GTTTATTGGGTGCGAGTGTGGGAATGTTTATATGATAAGAACTTGTGGGAACTCG------GTAGCAAGCTT------------------TGTCAAAAATAAATTGTTT-ACAATATTTAT--------------------------------------------------------------------------------------------------------------------------------------------------TAAAGGTATAGATTASizeHit CountTotal NormTotal
No Reads
droEle1
CAC--GTTT---GTTTATTGGGTACGAGTGTGAGAATGTTTATGCGATAAGAACTTGTGAAAACTCA------GCAGAAAGGTT------------------TGGCA-AAATAAATTGTTT-ACATTATTAAT-AGGAACAAT--GGATTAAAGTTTTAGTTAATTTAC-----------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGCCG-TTT--------------GCGAGGGTGGAAATGTTTATAAGATAAGAACCCGTGAGAACTCA------GTAGCAAGCTC------------------TGCCA-AAATAAATTGTTT-ACAATATTAAT-TAGAATATT--TAATTAAAGTTATAGTTAATTTGTATATA---CGT--G--TGTACATTTGGGTGTACATATGTAAATT-AACTTTC-TCCTTTG----------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droBia1
CGCCG-TTT---GTTTATTAGGGGCGAGTGTGGG-ATGTTTATATGATACGAACTTCTGAGAACTCG------GTAGAAATCTT------------------TGCCA-AAATAAAATGTTT-ACAATATTAAT----------------TAAAGGTATAGATAATT--------------------------------------------------------------------------------CTCCCCCTCCTAAGATGAATTATTACATT-------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ATGT-------------------------------------------------------------------------------------------------------------------TT-ACAATA----------------------------------------------------------------------------------------------TT-TTTTGT-A-TAATCTGCAGAACCTGCCCTCCTATGAAGACATAAGACGAAATGTTAATGATGCCAACAASizeHit CountTotal NormTotal
No Reads
droEug1
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAACTTGCCCTCCTATGAAGACATAAAGCGAAGTGTTTTTGATGCCAACAASizeHit CountTotal NormTotal
No Reads
dm3
TTA--A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-CTTTTC-TTGGTCTCGTAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGATGCCAACAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTTGT...............23115.00150000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000100000000000000000000000000000000000100100000010001000010000100001000200000
.....................................................................................................................................................................................................................................................ACCAGCCCAGCTATGAAGACATGAAGC......................27111.00110000000000000000000000000000000000000000000000000000000000000000000000000000010030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000100100000000100000010010000
................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTTGTTATT...........2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000012110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100100
.....................................................................................................................................................................................................................................................ACCAGCCCAGCTATGAAGACATGAAGCAAC...................3014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GCTATGAAGACATGAAGCAACTTGT...............2512.0020000000000000000000000000000000000000000000000010000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTT.................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GCCCAGCTATGAAGACATGAAGCAACT..................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................................................................................................................................................................TTTC-TTGGTCTCGTAGAACCA.............................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTTGTTAT............2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CCAGCTATGAAGACATGAAGCAACTTG................2712.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CCCAGCTATGAAGACATGAAGCAACTTG................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..A--A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-CTTTTC-TTGGTCTCGT....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TA--A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-CTTTTC-TTGGTCTCGTAG..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................CAGCTATGAAGACATGAAGCAACTTGT...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................CCAGCCCAGCTATGAAGACATGAAGCAAC...................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AACCAGCCCAGCTATGAAGACATGAAGC......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GCTATGAAGACATGAAGCAACTTGTT..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CCAGCCCAGCTATGAAGACATGAAGCAA....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CCAGCCCAGCTATGAAGACATGAAGCA.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTTG................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................CAGCTATGAAGACATGAAGCAAC...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................AGCCCAGCTATGAAGACA............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................ACCAGCCCAGCTATGAAGACATGA.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAA....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TC-TTGGTCTCGTAGAACCAGCCCAGC......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................ACCAGCCCAGCTATGAAGACATGAAGCAA....................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTC-TTGGTCTCGTAGAA................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TGAAGCAACTTGTTATTGATGCCAA...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTTGTTATTGAT........3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTTGT...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................GCTATGAAGACATGAAGCA.....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................GTCTCGTAGAACCAGCCCAGC......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TGAAGCAACTTGTTATTGATGCC.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TCGTAGAACCAGCCCAGCTAT...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................TGAAGCAACTTGTTATTGATG.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................AGCCCAGCTATGAAGACATGA.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................AGCTATGAAGACATGAAGCAACTTGA...............2611.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AACTTGTTATTGATGCCA....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ACTTGTTATTGATGCCAAC..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AACCAGCCCAGCTATGAAGACATG..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................ATGAAGCAACTTGTTATT...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................GAACCAGCCCAGCTATGAAGACATG..........................2511.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................ACATGAAGCAACTTGTTATTG..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CCAGCTATGAAGACATGAAGCAACTTGT...............2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CCCAGCTATGAAGACATGAAGCAACTTGT...............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TGAAGACATGAAGCAACTTGT...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTTGTT..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTTGTTATTGA.........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-CTTTTC-TTGGTCTCGTAG..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GCCCAGCTATGAAGACATGAAGCAACTTG................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TCTCGTAGAACCAGCCCAGCTATGAAGA..............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTA--A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-CTTTTC-T-TGGTCCGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGATGCCAACAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................AGCCCAGCTATGAAGACATGAAGCAACT..................2812.00200000002000000000
.........................................................................................................................................................................................................................................................GCCCAGCTATGAAGACATGAAGCAACT..................2712.00200000002000000000
.........................................................................................................................................................................................................................................................GCCCAGCTATGAAGACATGAA........................2111.00100000000000100000
.................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACT..................1911.00100100000000000000
.............................................................................................................................................................................................................................................................AGCTATGAAGACATGAAGCA.....................2011.00100000000000100000
.............................................................................................................................................................................................................................................................AGCTATGAAGACATGAAG.......................1811.00110000000000000000
...............................................................................................................................................................................................................................................................CTATGAAGACATGAAGCAACT..................2111.00110000000000000000
..................................................................................................................................................................................................................................................................TGAAGACATGAAGCAACA..................1811.00110000000000000000
..................................................................................................................................................................................................................................................AGAACCAGCCCAGCTATGAAGACATGA.........................2711.00100000001000000000
........................................................................................................................................................................................................................................................AGCCCAGCTATGAAGACATG..........................2011.00100000100000000000
.............................................................................................................................................................................................................................................................AGCTATGAAGACATGAAGCAACTTG................2511.00100000000000010000
.................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTT.................2011.00101000000000000000
.........................................................................................................................................................................................................................................................................ATGAAGCAACTTGTTATTGATGCC.....2411.00100010000000000000
........................................................................................................................................................................................................................................................AGCCCAGCTATGAAGACATGAAGCAAC...................2711.00100000000000001000
droSec2
TTA--A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-CTTTTC-T-TGGTCCGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGATGCCAACAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................CCAGCTATGAAGACATGAAGCAACTTG................2711.0010100
.............................................................................................................................................................................................................................................................AGCTATGAAGACATGAAGCA.....................2011.0010100
.........................................................................................................................................................................................................................................................GCCCAGCTATGAAGACATGAAGCA.....................2411.0011000
....................................................................................................................................................................................................................................................AACCAGCCCAGCTATGAAGACATGA.........................2511.0010010
.................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTT.................2011.0010100
droYak3
ATT--ACTA---ATAATCTTGGCC-----------------------------------------------------TATGCTTTTAAATGTGCAGTTGCTACATG-A--AA--GATTTAT-ATAA-------TTTCTAATAATTTTAAC---------------------------------------------------------------A--------CT-TTTTTC-T-TGACGCGCAGAACCAGCCTAGCTATGAAGACATGAAGCAACTTATTATTGATGCCAACAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTTATTA.............2512.00220000000000
........................................................................................................................................................................................................................................................AGCCTAGCTATGAAGACATGAAGCAAC...................2711.00100100000000
........................................................................................................................................................................................................................................................AGCCTAGCTATGAAGACATGAAGC......................2411.00100000010000
.................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAAC...................1811.00100100000000
......................................................................................................................................................................................................................................................CCAGCCTAGCTATGAAGACAT...........................2111.00100000010000
...............................................................................................................................................................................................................................................................................CAACTTATTATTGATGCCAAC..2111.00101000000000
...........................................................................................................................................................................................................................................................CTAGCTATGAAGACATGAAG.......................2011.00100000010000
droEre2
TTTTA-----------------------------------------------------------------------------------ATGTAAAGTTGCTACGTA-A--AA--GATTTAT-ACAA-------TTTCTAAGAATTTTTAC---------------------------------------------------------------A--------CT-CTTGTC-TTGGACTTGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTCATTATTGATGCCAACAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................CCAGCTATGAAGACATGAAGCAACTCATT..............2911.0011000000
................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTCAT...............2311.0010000100
.....................................................................................................................................................................................................................................................................AGACATGAAGCAACTCATTATTGATGCC.....2811.0011000000
.................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTCATTATT...........2611.0010000010
.................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTCATC..............2311.0010000010
.................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTCATT..............2311.0010000010
...........................................................................................................................................................................................................................................................CCAGCTATGAAGACATGAAG.......................2011.0010000100
....................................................................................................................................................................................................................................................................AAGACATGAAGCAACTCATTATT...........2311.0010000100
...................................................................................................................................................................................................................................................................GAAGACATGAAGCAACTCATT..............2111.0010001000
.........................................................................................................................................................................................................................................................GCCCAGCTATGAAGACATGAAG.......................2211.0010001000
................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTCATTATTGA.........2911.0011000000
................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTCATT..............2411.0010000100
dp5
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGACATTGCCTTCCTACGAGGACGTCAAGCAGCAAGTGCTTGATGCTAACAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................ATTGCCTTCCTACGAGGACGTCA.........................2311.0010100000000
......................................................................................................................................................................................................................................................ATTGCCTTCCTACGAGGACGTC..........................2211.0010100000000
droPer2
TTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-TTCGC----CCATCTACAGACATTGCCTTCCTACGAGGACGTCAAGCAGCAAGTGCTTGATGCTAACAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................GACGTCAAGCAGCAAGTGCTT...........2111.001001000
...........................................................................................................................................................................................................................................................CTTCCTACGAGGACGTCAAG.......................2011.001010000
...................................................................................................................................................................................................................................................GACATTGCCTTCCTACGAGGACGTCA.........................2611.001000010
droWil2
TACT--CTA-----------------------------------------------------------------------------------------------------AT-AATTGTTT-CTC-------------------------------------------------------------------------------------------------TCTTTTG-CTT-CAATCAACAGAGTCTACCATCGTACGAGGACATTAAGCGACAGGTGCTTGATGCCAACAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................AGTCTACCATCGTACGAGGACA............................2211.00110000
............................................................................................................................................................................................................................................................ATCGTACGAGGACATTAAGCGACA..................2411.00101000
.......................................................................................................................................................................................................................................................CTACCATCGTACGAGGAC.............................1811.00110000
...................................................................................................................................................................................................................................................GAGTCTACCATCGTACGAGGA..............................2111.00100010
droVir3
ACACT-TTA---TTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-TTCGCT-T-TTCATCACAGACCCTGCCCTCCTATGAGGACATCAAACGCCAGATTATGGATGCCAATAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................TGCCCTCCTATGAGGACATC..........................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CTGCCCTCCTATGAGGACATC..........................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CCTGCCCTCCTATGAGGACATC..........................2211.001000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................GACCCTGCCCTCCTATGAGGACATCAA........................2711.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGACCCTGCCTTCCTATGAGGACATCAAACGTCAGGTTCTGGATGCCAACAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................CAAACGTCAGGTTCTGGATGCCAAC..2511.001100000
..........................................................................................................................................................................................................................................................................TCAAACGTCAGGTTCTGGATGCCA....2411.001000100
...........................................................................................................................................................................................................................................................................CAAACGTCAGGTTCTGGATG.......2011.001100000
droGri2
AAT--ATTC---ACATT-----------------------------ATTCA----------------CCACTCAATT----------------AACTTGCAACACA-C--AT-CATTGATTCACATTTTAAAT-TGAAACTATTTTAATG---------------------------------------------------------------AA---TTA--T-TTTAAT-T-GCATTCTTAGAATCTGCCTTCATATGAGGACATCAAACGCCAGGTTCTGGATGCTAACAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................AACGCCAGGTTCTGGATGCTA....2112.00220
......................................................................................................................................................................................................................................................................GACATCAAACGCCAGGTTCTGGATGC......2611.00110
..............................................................................................................................................................................................................................................................................ACGCCAGGTTCTGGATGCT.....1911.00110
.............................................................................................................................................................................................................................................................TCATATGAGGACATCAAAC......................1911.00110
.........................................................................................................................................................................................................................................................GCCTTCATATGAGGACATC..........................1911.00110

Generated: 05/18/2015 at 06:08 AM