ID:

dan_3011

 Coordinate:

scaffold_13340:10505420-10505570 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.0 -14.5 -14.2

Flybase annnotation

CDS [Dana\GF16877-cds]; exon [dana_GLEANR_18143:4]; intron [Dana\GF16877-in]

Repeatable elements

NameClassFamilyStrand
Hoana8DNAhAT-hobo+
mature
  1. scaffold_132:79-101 +
  2. scaffold_6105:238-260 +
  3. scaffold_12671:132478-132500 +
  4. scaffold_12911:1169404-1169426 +
  5. scaffold_12911:1811561-1811583 +
  6. scaffold_12911:3783630-3783652 +
  7. scaffold_12913:135445-135467 +
  8. scaffold_12916:8805569-8805591 +
  9. scaffold_12947:563760-563782 +
  10. scaffold_13089:367529-367551 +
  11. scaffold_13099:2536010-2536032 +
  12. scaffold_13115:48250-48272 +
  13. scaffold_13250:1479122-1479144 +
  14. scaffold_13335:2608164-2608186 +
  15. scaffold_13337:9350260-9350282 +
  16. scaffold_13337:20051363-20051385 +
  17. scaffold_13339:3469412-3469434 +
  18. scaffold_13417:771899-771921 +
  19. scaffold_13417:3877004-3877026 +
  20. scaffold_13473:41808-41830 +
  21. scaffold_13045:364714-364736 +
  22. scaffold_13239:370673-370695 +
  23. scaffold_13248:3076956-3076978 +
  24. scaffold_13266:17125805-17125827 +
  25. scaffold_13337:2421092-2421114 +
  26. scaffold_13767:1159204-1159226 +
  27. scaffold_130:698-720 -
  28. scaffold_4398:696-718 -
  29. scaffold_6569:186-208 -
  30. scaffold_12696:1230-1252 -
  31. scaffold_12984:46847-46869 -
  32. scaffold_13099:455538-455560 -
  33. scaffold_13099:2139905-2139927 -
  34. scaffold_13230:3451506-3451528 -
  35. scaffold_13239:556794-556816 -
  36. scaffold_13250:2673668-2673690 -
  37. scaffold_13260:1980777-1980799 -
  38. scaffold_13266:17332785-17332807 -
  39. scaffold_13333:648232-648254 -
  40. scaffold_13337:3579394-3579416 -
  41. scaffold_13337:22874901-22874923 -
  42. scaffold_13339:1135710-1135732 -
  43. scaffold_13339:3425014-3425036 -
  44. scaffold_13340:5695185-5695207 -
  45. dan_3011  scaffold_13340:10505465-10505487 -
  46. scaffold_13417:2785775-2785797 -
star
  1. scaffold_130:731-756 -
  2. scaffold_12902:36008-36033 -
  3. scaffold_12943:3006547-3006572 -
  4. scaffold_12947:1558601-1558626 -
  5. scaffold_13082:3637290-3637315 -
  6. scaffold_13099:2584180-2584205 -
  7. scaffold_13228:706744-706769 -
  8. scaffold_13239:522239-522264 -
  9. scaffold_13250:2673701-2673726 -
  10. scaffold_13250:3114968-3114993 -
  11. scaffold_13250:3117163-3117188 -
  12. scaffold_13266:17332818-17332843 -
  13. scaffold_13266:19026928-19026953 -
  14. scaffold_13333:580942-580967 -
  15. scaffold_13333:648265-648290 -
  16. scaffold_13337:21517511-21517536 -
  17. scaffold_13339:1135743-1135768 -
  18. dan_3011  scaffold_13340:10505498-10505523 -
  19. scaffold_13417:6956523-6956548 -
  20. scaffold_13756:66244-66269 -
  21. scaffold_12084:7080-7105 +
  22. scaffold_12392:74655-74680 +
  23. scaffold_12671:190884-190909 +
  24. scaffold_12933:65308-65333 +
  25. scaffold_12935:64613-64638 +
  26. scaffold_13043:503514-503539 +
  27. scaffold_13077:144649-144674 +
  28. scaffold_13077:179712-179737 +
  29. scaffold_13099:2020849-2020874 +
  30. scaffold_13137:1115937-1115962 +
  31. scaffold_13250:2632950-2632975 +
  32. scaffold_13260:1960595-1960620 +
  33. scaffold_13260:2037148-2037173 +
  34. scaffold_13266:19516128-19516153 +
  35. scaffold_13335:2726240-2726265 +
  36. scaffold_13337:5131566-5131591 +
  37. scaffold_13417:1780993-1781018 +
  38. scaffold_13417:2124672-2124697 +
  39. scaffold_13417:6392988-6393013 +
  40. scaffold_13767:1089903-1089928 +
  41. scaffold_132:43-68 +
  42. scaffold_5401:2068-2093 +
  43. scaffold_5401:5758-5783 +
  44. scaffold_6105:202-227 +
  45. scaffold_9608:5637-5662 +
  46. scaffold_12911:3783594-3783619 +
  47. scaffold_13010:215661-215686 +
  48. scaffold_13021:8406-8431 +
  49. scaffold_13034:1535575-1535600 +
  50. scaffold_13088:48133-48158 +
  51. scaffold_13089:367493-367518 +
  52. scaffold_13248:4817553-4817578 +
  53. scaffold_13248:4824068-4824093 +
  54. scaffold_13280:494517-494542 +
  55. scaffold_13335:2608128-2608153 +
  56. scaffold_13337:13372272-13372297 +
  57. scaffold_13337:20051327-20051352 +
  58. scaffold_13417:771863-771888 +
  59. scaffold_13417:2369174-2369199 +
  60. scaffold_13417:3995393-3995418 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTTGAAGTGGATCGTATCAAAAATATTCTACAGGATTTTAAACGAATTCAGTGGGTATAGCACATTTTAAATTAAAACAAGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTGAGTCGCAGTCCGCTAGGTGGCGCCACGCATCTTATATTATTAGATATATAAAAGATCGTATATAGTCGGCCGATCCTTATGAAATTTGGCATATCGAATTATTTTGCCAAAAGAGGAAT
*************************************************************************************************..((((..(((..(((.(((.....(((......))).....))).))).)))..))))*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 V105
male body		 M044
female body
 M058
embryo
 V039
embryo
.....................................................................................................................................GTCGCAGTCCGCTAGGTGGCGCC............................................................................................... 23 0 20 0.75 15 15 0 0 0 0
...........................................................................................................................TTGCAGTTGAGTCGCAGTCCG........................................................................................................... 21 0 20 0.15 3 0 3 0 0 0
............................................AGTACAGTTGGTATAGCACA........................................................................................................................................................................................... 20 3 10 0.10 1 0 1 0 0 0
.................................................................................................CGGGCGGAGCCGAAGTTGATATACCC................................................................................................................................ 26 0 20 0.10 2 0 0 0 2 0
.............................................................................................................................GCAGTTGAGTCGCAGTCCG........................................................................................................... 19 0 20 0.05 1 0 0 1 0 0
.............................................................................CAAGAAAGGAAAGCTAACTTCGGGCGG................................................................................................................................................... 27 0 20 0.05 1 0 0 1 0 0
...........................................................................................................CGAAGTTGATATACCCTTGCAGTTGAG..................................................................................................................... 27 0 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

AAACTTCACCTAGCATAGTTTTTATAAGATGTCCTAAAATTTGCTTAAGTCACCCATATCGTGTAAAATTTAATTTTGTTCTTTCCTTTCGATTGAAGCCCGCCTCGGCTTCAACTATATGGGAACGTCAACTCAGCGTCAGGCGATCCACCGCGGTGCGTAGAATATAATAATCTATATATTTTCTAGCATATATCAGCCGGCTAGGAATACTTTAAACCGTATAGCTTAATAAAACGGTTTTCTCCTTA
***********************************************************************************************..((((..(((..(((.(((.....(((......))).....))).))).)))..))))************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
 V106
head
 V039
embryo
....................................................................................................CGCCTCGGCTTCAACTATATGGGAACGT........................................................................................................................... 28 0 20 0.40 8 8 0 0 0 0
...........................................................................................................................................CAGGCGATCCACCGCGGTGCGTAGAAT..................................................................................... 27 0 20 0.30 6 6 0 0 0 0
..............................................ATGTCACCCGTATAGTGTAAA........................................................................................................................................................................................ 21 3 4 0.25 1 0 0 1 0 0
.......................................................................................................................................................CGCGGTGCGTAGAATATAATAATCTATA........................................................................ 28 0 20 0.25 5 0 5 0 0 0
.............................................................................................................................................GGCGATCCACCGCGGTGCGTAGAA...................................................................................... 24 0 20 0.20 4 4 0 0 0 0
...............................................................................................................................................................................................TATATCAGCCGGCTAGGAATACT..................................... 23 0 20 0.20 4 4 0 0 0 0
.......................................................................................................................TGGGAACGTCAACTCAGCGTCAGG............................................................................................................ 24 0 20 0.15 3 3 0 0 0 0
.........................................................................................................CGGCTTCAACTATATGGGAAC............................................................................................................................. 21 0 20 0.15 3 0 0 0 3 0
.......................................................................................................CTCGGCTTCAACTATATGGGAAC............................................................................................................................. 23 0 20 0.10 2 2 0 0 0 0
.............................................................................................................................CGTCAACTCAGCGTCAGGCGA......................................................................................................... 21 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................CGATCCACCGCGGTGCGTAGAA...................................................................................... 22 0 20 0.10 2 0 2 0 0 0
.................................................................................................................................................................................TATATTTTCTAGCATATATCAGCCG................................................. 25 0 14 0.07 1 0 1 0 0 0
......................................................................TAATTTTGTTCTTTCCTTTCGA............................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................................CAGGCGATCCACCGCGGTGCGTAGA....................................................................................... 25 0 20 0.05 1 0 1 0 0 0
............................................................................................................CTTCAACTATATGGGAACGTCAACTC..................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
........................................................................................................................................................GCGGTGCGTAGAATATAATAAT............................................................................. 22 0 20 0.05 1 0 0 1 0 0
.....................................................................................................................................................................................................AGCCGGCTAGGAATACTTTAAACCGTAT.......................... 28 0 20 0.05 1 1 0 0 0 0
.........................................................................................................CGGCTTCAACTATATGGGAACGTC.......................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
.............................................................................................................................CGTCAACTCAGCGTCAGG............................................................................................................ 18 0 20 0.05 1 0 0 0 1 0
...............................................................................................................CAACTATATGGGAACGTCAACTCAGCGT................................................................................................................ 28 0 20 0.05 1 0 0 0 0 1
...................................................................................TCCTTTCGATTGAAGCCCGC.................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0
........................................................................................................................................................GCGGTGCGTAGAATATAATAATCT........................................................................... 24 0 20 0.05 1 1 0 0 0 0
....................................................................................................................ATATGGGAACGTCAACTCAGCGT................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0
......................................................................TAATTTTGTTCTTTCCTTTCGATTGAAG......................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
.............................................................................................TGAAGCCCGCCTCGGCTTCAACTAT..................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
................................................................................................................................CAACTCAGCGTCAGGCGATC....................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................CGCGGTGCGTAGAATATAATAAT............................................................................. 23 0 20 0.05 1 0 0 0 0 1
...............................................................................................................................................................................................................................ATAGCTTAATAAAACGGTTTTCTCCT.. 26 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:10505370-10505620 - dan_3011 TTTGAAGTGGAT---------------------------------CG-----------------------------------------------TATCAAAAAT-A--------TTCT----ACAG----------------------------------------GATTTTAA----------------------------------------------------------------------------------------ACGAATTCAGTGGGTATAGCACATTTTAAATTAAAACAAGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTG--AGTCGCA---GTCCGCTAGGTGGC--------------------------G------------------------------------------------------------CCACG--------CATCTTATAT-------------TATTAGATATATA------------------------AAAG--ATCGTATATAGTCGGCC----------GATCCTTATGA---------AATTTGGCATATCG-------A--------------ATTATTTTGCCAAAAGAGGAAT
droBip1 scf7180000396615:55727-55941 - CGCATCA--------------------------------------------------------------------------------------------AAAAA-G-----------------------------------------AAAATTTTAAAAACTGTATG-----------GTATGGTAAA--------------AAT-----TAAAAA-A-------AAAC--AAGAAAGTA--------------------------------------------------------------------AAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTG--AAACCGC-------------------------------------------ATATA---------------------------------------------------------------------CAACTAAT---------------------------------------GTCAACATATATCGCAGACATCGGATATAGTTGGCC----------GATCCTTATGA---------AATTTGGTAGGTTG-------G--------------ATCAACTGACCAAAAATAGAAT
droKik1 scf7180000302766:62996-63235 - TGAAGTT--TGTCATATAGCATATATTTGTTTGGTTTTGATAGAATT-----------------------------------------------T-----------------------TAA-------------------------A---AAAC------A----TTACTTATT--TGGTATTATAAAAAT-----------ATT-----TTAAAT-T-------TAAC--AAGAAAGGA-AGCTAACTTCG--GCACGCCGAAGTTTGTATAC--------------------------------------------------------------------CCTTGCAGATT--GGTTTTGA---------TGTTTATATTATAGATTTAAATGCTGAAAACACTCA-------------------------------------------------------------------------------------------------------------------------------CAAAACAGAGTTTTATTACATTTTACC----------TATACTTATTATGTTTAC----------AGTT------------------------------------------T-GA
droFic1 scf7180000453074:4340-4600 + TTTTAAATCTAT---------------------------------TC-----------------------------------------------CTTCAATAATTAC-------------------------------------------AATATTTACT------TATTCTAT-------------AAGT--------------ATTGTTTTTTT-A-------AGAC--AAGAAAGTA-AGCTAGCTTCG--GCAAGCCGAAGCTTATATAC--------------------------------------------------------------------CCTTGCACAAA--ATGCATAAAG------------------------------------------------------------------------------GCTAAACAACAACGAAGCTAGGACGATTTTTCTATTCA-----------TTTTCCATATTTTTGTC-----------------TATAGATCATATGGCAGCTATATGATATAGTTGTCC----------GATTTTGATCA---------AATTTAAT---TCGTTATTCA---------------------AGAGTCGTTAGA-AAA
droEle1 scf7180000490220:14121-14332 - TGAAGTGGAA-----------------------------------CT-----------------------------------------------TAAAAAAGT--AA-------------------------------------------AAGACAA------AATTGCTTACC--TGGTGG-----AGAT---------ACTAC-----TTATAA-G-------AAAC--AAGAAAGCA-AGTAAACTTCG--GCAAGCCGAAGTTCATATAC--------------------------------------------------------------------CCTTGCAGCTA--TTTCAAAAAC-------TAAATAC--------------------------TCTTGAAAACGTTAAAATTTTGATTTACTTGGTGGTATGTTTAAAAACATTGAAGATATAATGATT----------------------------------------------------------------------------------T----------------------------------GC----------AGCT------------------------------------------TAAT
droRho1 scf7180000763062:13321-13560 + TTTGAAATTTAA---------------------------------TA------------ATATTTTATAATATGGACGTTGACTTCGAAATACTTAAAA----------------------------------------------------------------------------------AGGTAAA--------------GACTT-----AATA-C-------AAACA-AAAAAGGAA-AGCTAACTTCG--GGT------------------------------------------------------------------GGAGCCGAAGTTGATAATCCCTTGCAGAAT--ATTCTTTAAG-------TTATGGC--------------------------ATTTC---------------------------------------------------------------------CA------------------------------------------ATCGTTCAGTTATATGGCAGCTATAGGATATAGTCGGCC----------GATCCTTATGA---------AATTTGGTAGGTCG-------G--------------ATTGATTGGCCAAAAATAAAAC
droBia1 scf7180000302421:1739154-1739417 - GTTGAGCGTT---------------------------------------------------------------------------------------CAAAAAT-G--------TT--TAA-------------------------A---ACGG------A----GGACTTTAGAAAGCTAATGTAGAAATATTATCAATA---------TTTTGT-A-------AAAC--A---AGGGA-ATTTAACTTCG--GCAAGCCGAAGTTTGTATAC--------------------------------------------------------------------CCTTGCAGTTATAAGAAATA---ATCAACTTTAGTAA--------------------------A------------------------------------------------------------CCATT--------TTTTTAATATTATTTTCCCACTAATTTCCC-----------------GATTGCTCATATGACAGCTATATGATATAGTCGTCC----------GATTTTGATAA---------AATTTAAT---TCGAAATTCA---------------------AAACCAATTAAAAAAT
droTak1 scf7180000414738:10534-10748 - TGAAAAAAGAGT---------------------------------CA-----------------------------------------------AATCAAATAC-------------------------------------------AAAAATCTTTGAA------TTTACTAT-----------AAA--------------AAT-----TTTTAC-A-------TAAC--AAGAAAGAA-AGCTAGCTTCG--GCAAGCCGAAGCTTATATAC--------------------------------------------------------------------CCTTGCAGATC--ATTCTATTAA-------TTTT-----------------------------------------------------------------------------------------------------------------------------------TC-----------------GATCGTTTTTATCACAGGTATATGATATAGTAGTTC----------GATCTTTTAAA---------AATTAAAA---TCGAAATTCGG--------------AAATAT--TTCAAAATAGTCAT
droEug1 scf7180000409767:435397-435472 + TGGGTTGTA---------------------------------------------------------------------------------------TTAAAGC--CAAAAATAATCTT----ATTGAATTTTGTACGCTTTCCTTA--------------------------------------------------------AG----------TT-A-------AAAT--AAGAAAGGA--------------------------------------------------------------------AAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrUextra:226069-226171 - TTCGATGGTT-----------------------------------TT-----------------------------------------------C-----------------------TAAG------------------------A---AAAC------ATCGATA-----------GTAT-----C---------GATAGTTT-T----CAAAC-AC------AAAA--AAAAAGGAA--CTATAATTTAACGTGAACCGAAGTTTATATAC--------------------------------------------------------------------CCTTGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3r:11644907-11644975 - TATGAACTGGAT---------------------------------CA-----------------------------------------------TCTTAAGGAA-------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTCGAGGTGTTCAGGA--------------------------------------------------------------------AGTTGCAGTAA--GTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------GG----------CGCT------------------------------------------TTTT
droSec2 scaffold_184:30465-30524 - AGTTAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA--AAAATGGAACTATAATATAAC--GTGAACCGAAGTTTATATAC--------------------------------------------------------------------CCTTGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chr3L_random_007:20772-20874 + TTTAAGGGAAGT---------------------------------CA-----------------------------------------------TGTGATAA-TTAC-------------------------------------------ATAACA----------------------------------------------AATTT-----AA-A-A-------AAAA--AAGGAAAGA-AGCCAGACTTG--GCATGCCGAAGCTTATATAC--------------------------------------------------------------------CCTTGCAGTAA--TGTTACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:14066130-14066213 + TAACCAAGTT---------------------------------------------------------------------------------------C-------------------------------------------AGTG--------------------TG------------------------------TCTTGACT-G----AAAAC-A-------AGAA--AAGAAAGGA-AGGAAGATTCG--GCAAGCCGAAGCTTATATAC--------------------------------------------------------------------CCTTGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_607:6045-6135 - TTGGAAATAACA---------------------------------CG-----------------------------------------------GTTAGAAAAT-------------------------------------------AAAATTTTTAAAA------TTTTTTAA----------------------------------------------------------------------------------------ACGATTTTATTTCATTCAGCACGGCTTAAAATAAAACGAGGG-----G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA
droPer2 scaffold_0:3945034-3945093 + TCAACTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------AAAC--AAGAAAGAA--------------------------------------------------------------------AAGCTGGCTTTTTGAGGAGCGAAGCTTCAGATACCCTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000001616:1120-1372 - TTTAAAGCGAAT---------------------------------TAAAATGAAAATGTATATACTATTAT-------------------------TTAAAAGT--------AAAATT----AAAAAAATTTGAACAATTTAATGA--------------------------------------------------------AT-TT-----AAAACAAAAAAAAAAACCAGAGGGCCGG-GGCTAACTTCGA-CCGCGTCAAAGTTTGTATAC--------------------------------------------------------------------CCTTGCAACTT--TTTTGGTAAC-------TTTTTCC------------------------------T---------------------------------------------------------------------TACCTATA---------------------------------------GCCATCAA---------AGTGGAAAAACGTTTTATCTAAAAAGGCTAATGTTT---------GCGAA---------------------AG----AACGGCCAACAATC----TTATCACAG-GA
droVir3 scaffold_12847:48545-48757 + TTTGAGAAATAT---------------------------------AA-----------------------------------------------AAC-AATTTT------------------GA----------------------A---AAAGCTC------AATAGCGCAAC--AGGT-------------------------ATAATAAATAA-A-------AGAA--AAGAAAGAAAGGCTATCTTCG--GCACGCCGAAGATCTAGTAA--------------------------------------------------------------------CCTTGCAGACC--CAACCGTG--GTCCGA-T----------------------------------------------------------------------------------------------------------CT--TAATATAA-----------TTTTGCCTATATA------------------------TGAGGAGTATAGTAAAG--------------CTAATAAAT---------GCCGA---------------------GT----TTGGTCAAGATATC----TTAAAAAACCAA
droMoj3 scaffold_6540:31233260-31233319 + TTTAAAGGAAAA---------------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------AAAC--AAGAAAAGA-----ATGTCTGACGT-GATCGAAAATCATATAC--------------------------------------------------------------------TCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15126:988987-989173 - TCTATATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC--AAGAAAGAATCGCTTTCTCAG--GCACACCGATGATTATATAT--------------------------------------------------------------------CCTTGAAGACT--GCAATCTA-------CCTGTGAGC--------------------------A------------------------------------------------------------TTATA--------------------------------AAAAGAAATAAAAGAAACCGAACAATTATTCCTGTGGGAGCTATATGATATAA-----------------------------------------GACATATTG-------AGTTGGATTGGTTTTCATATCAGGCTCAACAAAAAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTTGAAGTGGAT---------------------------------CG-----------------------------------------------TATCAAAAAT-A--------TTCT----ACAG----------------------------------------GATTTTAA----------------------------------------------------------------------------------------ACGAATTCAGTGGGTATAGCACATTTTAAATTAAAACAAGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTG--AGTCGCA---GTCCGCTAGGTGGC--------------------------G------------------------------------------------------------CCACG--------CATCTTATAT-------------TATTAGATATATA------------------------AAAG--ATCGTATATAGTCGGCC----------GATCCTTATGA---------AATTTGGCATATCG-------A--------------ATTATTTTGCCAAAAGAGGAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................GTCGCA---GTCCGCTAGGTGGC--------------------------G------------------------------------------------------------CC......................................................................................................................................................................................23200.75150000015
........................................................................................................................................................................................................................................................................................................................................................TTGCAGTTG--AGTCGCA---GTCCG........................................................................................................................................................................................................................................................................................21200.153000030
..............................................................................................................................................................................................................................................................................................................................CGGGCGGAGCCGAAGTTGATATACCC..................................................................................................................................................................................................................................................................................................................26200.102020000
..........................................................................................................................................................................................................................................................................................................................................................GCAGTTG--AGTCGCA---GTCCG........................................................................................................................................................................................................................................................................................19200.051100000
..........................................................................................................................................................................................................................................................................................................CAAGAAAGGAAAGCTAACTTCGGGCGG.....................................................................................................................................................................................................................................................................................................................................27200.051100000
........................................................................................................................................................................................................................................................................................................................................CGAAGTTGATATACCCTTGCAGTTG--AG.....................................................................................................................................................................................................................................................................................................27200.051001000
droBip1
CGCATCA--------------------------------------------------------------------------------------------AAAAA-G-----------------------------------------AAAATTTTAAAAACTGTATG-----------GTATGGTAAA--------------AAT-----TAAAAA-A-------AAAC--AAGAAAGTA--------------------------------------------------------------------AAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTG--AAACCGC-------------------------------------------ATATA---------------------------------------------------------------------CAACTAAT---------------------------------------GTCAACATATATCGCAGACATCGGATATAGTTGGCC----------GATCCTTATGA---------AATTTGGTAGGTTG-------G--------------ATCAACTGACCAAAAATAGAATSizeHit CountTotal NormTotal
No Reads
droKik1
TGAAGTT--TGTCATATAGCATATATTTGTTTGGTTTTGATAGAATT-----------------------------------------------T-----------------------TAA-------------------------A---AAAC------A----TTACTTATT--TGGTATTATAAAAAT-----------ATT-----TTAAAT-T-------TAAC--AAGAAAGGA-AGCTAACTTCG--GCACGCCGAAGTTTGTATAC--------------------------------------------------------------------CCTTGCAGATT--GGTTTTGA---------TGTTTATATTATAGATTTAAATGCTGAAAACACTCA-------------------------------------------------------------------------------------------------------------------------------CAAAACAGAGTTTTATTACATTTTACC----------TATACTTATTATGTTTAC----------AGTT------------------------------------------T-GASizeHit CountTotal NormTotal
No Reads
droFic1
TTTTAAATCTAT---------------------------------TC-----------------------------------------------CTTCAATAATTAC-------------------------------------------AATATTTACT------TATTCTAT-------------AAGT--------------ATTGTTTTTTT-A-------AGAC--AAGAAAGTA-AGCTAGCTTCG--GCAAGCCGAAGCTTATATAC--------------------------------------------------------------------CCTTGCACAAA--ATGCATAAAG------------------------------------------------------------------------------GCTAAACAACAACGAAGCTAGGACGATTTTTCTATTCA-----------TTTTCCATATTTTTGTC-----------------TATAGATCATATGGCAGCTATATGATATAGTTGTCC----------GATTTTGATCA---------AATTTAAT---TCGTTATTCA---------------------AGAGTCGTTAGA-AAASizeHit CountTotal NormTotal
No Reads
droEle1
TGAAGTGGAA-----------------------------------CT-----------------------------------------------TAAAAAAGT--AA-------------------------------------------AAGACAA------AATTGCTTACC--TGGTGG-----AGAT---------ACTAC-----TTATAA-G-------AAAC--AAGAAAGCA-AGTAAACTTCG--GCAAGCCGAAGTTCATATAC--------------------------------------------------------------------CCTTGCAGCTA--TTTCAAAAAC-------TAAATAC--------------------------TCTTGAAAACGTTAAAATTTTGATTTACTTGGTGGTATGTTTAAAAACATTGAAGATATAATGATT----------------------------------------------------------------------------------T----------------------------------GC----------AGCT------------------------------------------TAATSizeHit CountTotal NormTotal
No Reads
droRho1
TTTGAAATTTAA---------------------------------TA------------ATATTTTATAATATGGACGTTGACTTCGAAATACTTAAAA----------------------------------------------------------------------------------AGGTAAA--------------GACTT-----AATA-C-------AAACA-AAAAAGGAA-AGCTAACTTCG--GGT------------------------------------------------------------------GGAGCCGAAGTTGATAATCCCTTGCAGAAT--ATTCTTTAAG-------TTATGGC--------------------------ATTTC---------------------------------------------------------------------CA------------------------------------------ATCGTTCAGTTATATGGCAGCTATAGGATATAGTCGGCC----------GATCCTTATGA---------AATTTGGTAGGTCG-------G--------------ATTGATTGGCCAAAAATAAAACSizeHit CountTotal NormTotal
No Reads
droBia1
GTTGAGCGTT---------------------------------------------------------------------------------------CAAAAAT-G--------TT--TAA-------------------------A---ACGG------A----GGACTTTAGAAAGCTAATGTAGAAATATTATCAATA---------TTTTGT-A-------AAAC--A---AGGGA-ATTTAACTTCG--GCAAGCCGAAGTTTGTATAC--------------------------------------------------------------------CCTTGCAGTTATAAGAAATA---ATCAACTTTAGTAA--------------------------A------------------------------------------------------------CCATT--------TTTTTAATATTATTTTCCCACTAATTTCCC-----------------GATTGCTCATATGACAGCTATATGATATAGTCGTCC----------GATTTTGATAA---------AATTTAAT---TCGAAATTCA---------------------AAACCAATTAAAAAATSizeHit CountTotal NormTotal
No Reads
droTak1
TGAAAAAAGAGT---------------------------------CA-----------------------------------------------AATCAAATAC-------------------------------------------AAAAATCTTTGAA------TTTACTAT-----------AAA--------------AAT-----TTTTAC-A-------TAAC--AAGAAAGAA-AGCTAGCTTCG--GCAAGCCGAAGCTTATATAC--------------------------------------------------------------------CCTTGCAGATC--ATTCTATTAA-------TTTT-----------------------------------------------------------------------------------------------------------------------------------TC-----------------GATCGTTTTTATCACAGGTATATGATATAGTAGTTC----------GATCTTTTAAA---------AATTAAAA---TCGAAATTCGG--------------AAATAT--TTCAAAATAGTCATSizeHit CountTotal NormTotal
No Reads
droEug1
TGGGTTGTA---------------------------------------------------------------------------------------TTAAAGC--CAAAAATAATCTT----ATTGAATTTTGTACGCTTTCCTTA--------------------------------------------------------AG----------TT-A-------AAAT--AAGAAAGGA--------------------------------------------------------------------AAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTCGATGGTT-----------------------------------TT-----------------------------------------------C-----------------------TAAG------------------------A---AAAC------ATCGATA-----------GTAT-----C---------GATAGTTT-T----CAAAC-AC------AAAA--AAAAAGGAA--CTATAATTTAACGTGAACCGAAGTTTATATAC--------------------------------------------------------------------CCTTGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................TAACGTGAACCGAAGTTTATATAC--------------------------------------------------------------------CCT.................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000200000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TTTAACGTGAACCGAAGTTTATATAC--------------------------------------------------------------------CCT.................................................................................................................................................................................................................................................................................................................2914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TTAACGTGAACCGAAGTTTATATAC--------------------------------------------------------------------CCT.................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TAAG------------------------A---AAAC------ATCGATA-----------GTAT-----C---------GATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................TTTAACGTGAACCGAAGTTTATAT..........................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TTTAACGTGAACCGAAGTTTATATAC--------------------------------------------------------------------C...................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TTTAACGTGAACCGAAGTTTATATA.........................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................ATTTAACGTGAACCGAAGT................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TTTAACGTGAACCGAAGTTTA.............................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........T-----------------------------------TT-----------------------------------------------C-----------------------TAAG------------------------A---AAAC------ATCGATA-----------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2131.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTT-T----CAAAC-AC------AAAA--AAAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TTTAACGTGAACCGAAGTT...............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................A--CTATAATTTAACGTGAACCGAAGTT...............................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................AAGGAA--CTATAATTTAAC............................................................................................................................................................................................................................................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TAAG------------------------A---AAAC------ATCGATA-----------GTAT-----C---------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................................................................................................................................................................................TAGTTT-T----CAAAC-AC------AAAA--AAAAAGGAA--C.......................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........T-----------------------------------TT-----------------------------------------------C-----------------------TAAG------------------------A---AAAC------ATCGATA-----------GTAT-----C---------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TTAACGTGAACCGAAGTTTATATAC--------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................T-T----CAAAC-AC------AAAA--AAAAAGGAA--CTA.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TTAACGTGAACCGAAGTTTATATAC--------------------------------------------------------------------C...................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................T-----------------------------------------------C-----------------------TAAG------------------------A---AAAC------ATCGATA-----------GTAT-----C---------GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TATAATTTAACGTGAACCGAAG.................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................CTATAATTTAACGTGAACCGAAGT................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TAT-----C---------GATAGTTT-T----CAAAC-AC------AAAA--AA.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................ATA-----------GTAT-----C---------GATAGTTT-T----CAAAC-A................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................CGTGAACCGAAGTTTATATAC--------------------------------------------------------------------CCT.................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGATA-----------GTAT-----C---------GATAGTTT-T----CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................TATAATTTAACGTGAACCGAAGTTTATA...........................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TT-----------------------------------------------C-----------------------TAAG------------------------A---AAAC------ATCGATA-----------GTAT-----C---------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................AAC------ATCGATA-----------GTAT-----C---------GATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TTTAACGTGAACCGAAGTTTATATAC--------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................AA--CTATAATTTAACGTGAACC.....................................................................................................................................................................................................................................................................................................................................................................................................2130.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GATGGTT-----------------------------------TT-----------------------------------------------C-----------------------TAAG------------------------A---AAAC------AT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................T-----------------------------------------------C-----------------------TAAG------------------------A---AAAC------ATCGATA-----------GTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AAAGGAA--CTATAATTTAACGTGAACC.....................................................................................................................................................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CGATGGTT-----------------------------------TT-----------------------------------------------C-----------------------TAAG------------------------A---AAAC------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AGGAA--CTATAATTTAACGTGAACC.....................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................AAGGAA--CTATAATTTAACGTGAAC......................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TT-----------------------------------------------C-----------------------TAAG------------------------A---AAAC------ATCGATA-----------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TT-----------------------------------TT-----------------------------------------------C-----------------------TAAG------------------------A---AAAC------ATCGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........TT-----------------------------------TT-----------------------------------------------C-----------------------TAAG------------------------A---AAAC------ATCGATA-----------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droSim2
TATGAACTGGAT---------------------------------CA-----------------------------------------------TCTTAAGGAA-------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTCGAGGTGTTCAGGA--------------------------------------------------------------------AGTTGCAGTAA--GTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------GG----------CGCT------------------------------------------TTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
AGTTAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA--AAAATGGAACTATAATATAAC--GTGAACCGAAGTTTATATAC--------------------------------------------------------------------CCTTGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTTAAGGGAAGT---------------------------------CA-----------------------------------------------TGTGATAA-TTAC-------------------------------------------ATAACA----------------------------------------------AATTT-----AA-A-A-------AAAA--AAGGAAAGA-AGCCAGACTTG--GCATGCCGAAGCTTATATAC--------------------------------------------------------------------CCTTGCAGTAA--TGTTACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TAACCAAGTT---------------------------------------------------------------------------------------C-------------------------------------------AGTG--------------------TG------------------------------TCTTGACT-G----AAAAC-A-------AGAA--AAGAAAGGA-AGGAAGATTCG--GCAAGCCGAAGCTTATATAC--------------------------------------------------------------------CCTTGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................G--------------------TG------------------------------TCTTGACT-G----AAAAC-A-------AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
dp5
TTGGAAATAACA---------------------------------CG-----------------------------------------------GTTAGAAAAT-------------------------------------------AAAATTTTTAAAA------TTTTTTAA----------------------------------------------------------------------------------------ACGATTTTATTTCATTCAGCACGGCTTAAAATAAAACGAGGG-----G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TCAACTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------AAAC--AAGAAAGAA--------------------------------------------------------------------AAGCTGGCTTTTTGAGGAGCGAAGCTTCAGATACCCTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTTAAAGCGAAT---------------------------------TAAAATGAAAATGTATATACTATTAT-------------------------TTAAAAGT--------AAAATT----AAAAAAATTTGAACAATTTAATGA--------------------------------------------------------AT-TT-----AAAACAAAAAAAAAAACCAGAGGGCCGG-GGCTAACTTCGA-CCGCGTCAAAGTTTGTATAC--------------------------------------------------------------------CCTTGCAACTT--TTTTGGTAAC-------TTTTTCC------------------------------T---------------------------------------------------------------------TACCTATA---------------------------------------GCCATCAA---------AGTGGAAAAACGTTTTATCTAAAAAGGCTAATGTTT---------GCGAA---------------------AG----AACGGCCAACAATC----TTATCACAG-GASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GCGAA---------------------AG----AACGGCCAACAAT.................21200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAA---------AGTGGAAAAACGTTTTATCTAAAA...................................................................................29200.05100100
droVir3
TTTGAGAAATAT---------------------------------AA-----------------------------------------------AAC-AATTTT------------------GA----------------------A---AAAGCTC------AATAGCGCAAC--AGGT-------------------------ATAATAAATAA-A-------AGAA--AAGAAAGAAAGGCTATCTTCG--GCACGCCGAAGATCTAGTAA--------------------------------------------------------------------CCTTGCAGACC--CAACCGTG--GTCCGA-T----------------------------------------------------------------------------------------------------------CT--TAATATAA-----------TTTTGCCTATATA------------------------TGAGGAGTATAGTAAAG--------------CTAATAAAT---------GCCGA---------------------GT----TTGGTCAAGATATC----TTAAAAAACCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................TT------------------GA----------------------A---AAAGCTC------AATAGCGCAAC--AGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26525.40127009010400002110000000002435110000150112551214000000000000000000002000
......................................................................................................TT------------------GA----------------------A---AAAGCTC------AATAGCGCAAC--AG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25204.408800500020000001000000000143880001814176910000000000000000000000000
......................................................................................................TT------------------GA----------------------A---AAAGCTC------AATAGCGCAAC--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23201.9539000000000000000000001000969500000018000000000000000000000000000
.......................................................................................................T------------------GA----------------------A---AAAGCTC------AATAGCGCAAC--AGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.603002000000000000000000000000000000001000000000000000000000000000
......................................................................................................TT------------------GA----------------------A---AAAGCTC------AATAGCGCAAC--A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.5511000020000001000000000000000200114000000000000000000000000000000
......................................................................................................TT------------------GA----------------------A---AAAGCTC------AATAGCGCAAC--AGGT-------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.331000000000000000000000000000000000000010000000000000000000000000
......................................................................................................TT------------------GA----------------------A---AAAGCTC------AATAGCGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.255000000000000000000000000004000000000000100000000000000000000000
..................................................................................................................................................A---AAAGCTC------AATAGCGCAAC--AGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.201001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---------GCCGA---------------------GT----TTGGTCAAGATATC----............23200.102000000200000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................GAAAGAAAGGCTATCTTCG--GCACGC......................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................TT------------------GA----------------------A---AAAGCTC------AATAGCGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................AGCTC------AATAGCGCAAC--AG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTATATA------------------------TGAGGAGTATA....................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................A----------------------A---AAAGCTC------AATAGCGCAAC--AG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................A---AAAGCTC------AATAGCGCAAC--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................A---AAAGCTC------AATAGCGCAAC--A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT---------GCCGA---------------------GT----TTGGTCAAGATA..................22200.051000000000000000000000000000000000000000000000000000000000000010
......................................................................................................TT------------------GA----------------------A---AAAGCTC------AATAGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AAGAAAGAAAGGCTATCTTCG--G...........................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................GA----------------------A---AAAGCTC------AATAGCGCAAC--A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000001000000000000000000000000000
droMoj3
TTTAAAGGAAAA---------------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------AAAC--AAGAAAAGA-----ATGTCTGACGT-GATCGAAAATCATATAC--------------------------------------------------------------------TCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCTATATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC--AAGAAAGAATCGCTTTCTCAG--GCACACCGATGATTATATAT--------------------------------------------------------------------CCTTGAAGACT--GCAATCTA-------CCTGTGAGC--------------------------A------------------------------------------------------------TTATA--------------------------------AAAAGAAATAAAAGAAACCGAACAATTATTCCTGTGGGAGCTATATGATATAA-----------------------------------------GACATATTG-------AGTTGGATTGGTTTTCATATCAGGCTCAACAAAAAAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:10 AM