ID:

dan_298

 Coordinate:

scaffold_12916:11304288-11304355 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.0 -29.9

Flybase annnotation

Antisense to exon [dana_GLEANR_15060:2]; Antisense to CDS [Dana\GF14298-cds]

No Repeatable elements found

mature
  1. dan_298  scaffold_12916:11304295-11304312 +
  2. dan_298  scaffold_12916:11304337-11304354 +
star
  1. dan_298  scaffold_12916:11304295-11304312 +
  2. dan_298  scaffold_12916:11304337-11304354 +

Sense Strand Reads

GAGGACCTATATCATTTTAGGGAGGGGGTGCATCGCTTTTGGGTGGTAGTGCATCGCTTTTGGGTGGTGGTGCATCGTTTTTGGGAGGTGGTGCATCATTTTTGGGTGGTGGTGCATCGTATTTGGGTGGTGGTATCTCATCGTTCTTGGGTGGTGGTGCTGGTGCAG
******************************************......((((((((((.((.((.((((((((((((((((...)))))))))))))))).)).)).))))))))))...............************************************ 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 V106
head
 V055
head
 M058
embryo
 V039
embryo
..................................................................................................TTTGTGGGTGGTGGTGCAT................................................... 19 1 1 12846.00 12846 9168 1881 1634 157 6 0
...................................................................................................TTGTGGGTGGTGGTGCAT................................................... 18 1 4 5212.75 20851 18083 1177 1515 70 6 0
.........................................................TTGTGGGTGGTGGTGCAT............................................................................................. 18 1 4 5212.75 20851 18083 1177 1515 70 6 0
..................................................................................................TTTGTGGGTGGTGGTGCATG.................................................. 20 2 5 1012.00 5060 4051 644 261 104 0 0
.................................................................................................TTTTGTGGGTGGTGGTGCAT................................................... 20 2 4 919.50 3678 2839 575 201 62 0 1
..................................................................................................TTTGTGGGTGGTGGTGCA.................................................... 18 1 4 591.25 2365 1891 46 423 3 2 0
..................................................................................................TTTGTGGGTGGTGGTGCATGG................................................. 21 2 4 367.75 1471 1086 231 126 28 0 0
.................................................................................................ATCTATGGGTGGTGGTGCAT................................................... 20 2 2 197.50 395 167 10 100 49 64 5
.................................................................................................ATCTATGGGTGGTGGTGCATG.................................................. 21 3 5 182.60 913 315 8 104 281 146 59
................................................................................................ATTTTGTGGGTGGTGGTGCAT................................................... 21 3 9 173.56 1562 1130 281 127 24 0 0
.................................................................................................ATTTGTGGGTGGTGGTGCAT................................................... 20 1 1 169.00 169 126 21 21 1 0 0
........................................................CTTGTGGGTGGTGGTGCAT............................................................................................. 19 1 1 104.00 104 84 12 8 0 0 0
.................................................................................................ATCTATGGGTGGTGGTGCATGG................................................. 22 3 2 96.50 193 70 3 31 50 28 11
.........................................................TTTTGGGTGGTGGTGCAT............................................................................................. 18 0 2 66.00 132 100 5 27 0 0 0
...................................................................................................TTTTGGGTGGTGGTGCAT................................................... 18 0 2 66.00 132 100 5 27 0 0 0
.............................................................................TTTGTGGGAGGTGGTGCATG....................................................................... 20 2 1 59.00 59 58 1 0 0 0 0
..................................................................................................TTTTTGGGTGGTGGTGCAT................................................... 19 0 1 56.00 56 48 5 3 0 0 0
..........................................................TATGGGTGGTGGTGCATG............................................................................................ 18 2 13 52.85 687 519 10 71 55 32 0
....................................................................................................TATGGGTGGTGGTGCATG.................................................. 18 2 13 52.85 687 519 10 71 55 32 0
..........................................................TTTGGGTGGTGGTGCATG............................................................................................ 18 1 2 50.50 101 85 6 7 0 3 0
....................................................................................................TTTGGGTGGTGGTGCATG.................................................. 18 1 2 50.50 101 85 6 7 0 3 0
.................................................................................................ATCTATGGGTGGTGGTGCA.................................................... 19 2 7 43.14 302 170 2 94 13 23 0
.......................................................TCTTGTGGGTGGTGGTGCAT............................................................................................. 20 2 2 38.50 77 16 43 17 1 0 0
................................................................................................GATTTGTGGGTGGTGGTGCAT................................................... 21 2 1 38.00 38 20 11 6 1 0 0
..................................................................................................TCTATGGGTGGTGGTGCAT................................................... 19 2 4 37.25 149 96 13 24 7 9 0
.....................................................................................................TTGGGTGGTGGTGCATGG................................................. 18 1 2 33.00 66 59 2 5 0 0 0
...........................................................TTGGGTGGTGGTGCATGG........................................................................................... 18 1 2 33.00 66 59 2 5 0 0 0
.................................................................................................TTTTGTGGGTGGTGGTGCA.................................................... 19 2 20 29.55 591 469 60 58 4 0 0
..................................................................................................TCTATGGGTGGTGGTGCATG.................................................. 20 3 10 28.70 287 205 7 16 33 23 3
...................................................................................................CTATGGGTGGTGGTGCAT................................................... 18 2 12 26.67 320 243 4 53 7 13 0
.........................................................CTATGGGTGGTGGTGCAT............................................................................................. 18 2 12 26.67 320 243 4 53 7 13 0
.................................................................................................CTTTGTGGGTGGTGGTGCAT................................................... 20 2 2 24.00 48 40 5 3 0 0 0
....................................................................................................TATGGGTGGTGGTGCATGG................................................. 19 2 8 23.13 185 120 7 23 31 4 0
..........................................................TATGGGTGGTGGTGCATGG........................................................................................... 19 2 8 23.13 185 120 7 23 31 4 0
..................................................................................................TTTCTGGGTGGTGGTGCAT................................................... 19 1 1 23.00 23 18 3 2 0 0 0
..................................................................................................TCTATGGGTGGTGGTGCATGG................................................. 21 3 4 20.75 83 55 1 8 10 9 0
........................................................CTTGTGGGTGGTGGTGCATG............................................................................................ 20 2 2 20.00 40 34 5 1 0 0 0
....................................TTGTGGGTGGTAGTGCAT.................................................................................................................. 18 1 1 19.00 19 6 12 1 0 0 0
..................................................................................................TTTTTGGGTGGTGGTGCATG.................................................. 20 1 1 18.00 18 16 1 1 0 0 0
............................................................TGGGTGGTGGTGCATGGCT......................................................................................... 19 2 10 17.70 177 167 0 10 0 0 0
.......................................TGGGTGGTGGTGCATGGCT.............................................................................................................. 19 2 10 17.70 177 167 0 10 0 0 0
.................................................................................................ATTTGTGGGTGGTGGTGCATG.................................................. 21 2 3 17.67 53 33 12 8 0 0 0
.........................................................TTTTGGGTGGTGGTGCATG............................................................................................ 19 1 2 17.50 35 30 1 4 0 0 0
...................................................................................................TTTTGGGTGGTGGTGCATG.................................................. 19 1 2 17.50 35 30 1 4 0 0 0
.........................................................TTCTGGGTGGTGGTGCAT............................................................................................. 18 1 2 15.00 30 26 2 2 0 0 0
....................................................................................................TTTGGGTGGTGGTGCATGG................................................. 19 1 2 15.00 30 24 2 3 0 1 0
...................................................................................................TTCTGGGTGGTGGTGCAT................................................... 18 1 2 15.00 30 26 2 2 0 0 0
..........................................................TTTGGGTGGTGGTGCATGG........................................................................................... 19 1 2 15.00 30 24 2 3 0 1 0
..................................................................................................TCTATGGGTGGTGGTGCA.................................................... 18 2 13 13.69 178 151 1 16 1 9 0
.................................................................................................TTTTTTGGGTGGTGGTGCAT................................................... 20 1 1 12.00 12 11 1 0 0 0 0
.................................................................................................ATTTGTGGGTGGTGGTGCA.................................................... 19 1 4 11.25 45 27 11 7 0 0 0
.................................................................................................ATTTGTGGGTGGTGGTGC..................................................... 18 1 10 10.10 101 101 0 0 0 0 0
.............................................................................TTTGTGGGAGGTGGTGCAT........................................................................ 19 1 1 10.00 10 7 1 2 0 0 0
..................................................................................................TTTCTGGGTGGTGGTGCATG.................................................. 20 2 1 10.00 10 9 0 1 0 0 0
..................................................................................................TTTGTGGGTCGTGGTGCAT................................................... 19 2 2 9.00 18 8 5 5 0 0 0
........................................................CTTGTGGGTGGTGGTGCA.............................................................................................. 18 1 4 8.25 33 23 1 9 0 0 0
...................................................................................................TTTTGGGTGGTGGTGCATGG................................................. 20 1 2 8.00 16 14 0 2 0 0 0
..........................................................TGTGGGTGGTGGTGCATC............................................................................................ 18 1 3 8.00 24 18 1 3 2 0 0
....................................................................................................TGTGGGTGGTGGTGCATC.................................................. 18 1 3 8.00 24 18 1 3 2 0 0
..................................................................................................TTTGTGGGTGGTGGTTCAT................................................... 19 2 9 8.00 72 22 25 24 1 0 0
.........................................................TTTTGGGTGGTGGTGCATGG........................................................................................... 20 1 2 8.00 16 14 0 2 0 0 0
.............................................................................................CTTGATTTGTGGGTGGTGGTGCAT................................................... 24 3 1 8.00 8 3 5 0 0 0 0
..................................................................................................TTTGTGGGTGGTGGTGCATCGC................................................ 22 2 1 8.00 8 3 2 3 0 0 0
..................................................................................................TTTTTGGGTGGTGGTGCA.................................................... 18 0 1 7.00 7 6 0 1 0 0 0
..................................................................................................TTTTTGGGTGGTGGTGCATGGC................................................ 22 2 1 7.00 7 5 0 2 0 0 0
...................................................................................................TTGTGGGTGGTGGTTCAT................................................... 18 2 19 6.58 125 93 12 16 4 0 0
.........................................................TTGTGGGTGGTGGTTCAT............................................................................................. 18 2 19 6.58 125 93 12 16 4 0 0
...............................................................................................TGATTTGTGGGTGGTGGTGCAT................................................... 22 2 1 6.00 6 5 0 1 0 0 0
..................................................................................................TTTTTGGGTGGTGGTGCATGGCC............................................... 23 3 1 6.00 6 3 1 2 0 0 0
.................................................................................................ATTTGTGGGTGGTGGTGCATGG................................................. 22 2 3 6.00 18 10 4 2 2 0 0
..................................................................................................TTTGTGGGTGGTGGTGCATGGT................................................ 22 2 2 6.00 12 7 1 4 0 0 0
..................................................................................................TTTGTGGGTGGTGGTCCAT................................................... 19 2 8 5.75 46 18 21 5 2 0 0
..................................................................................................TTTGTGGGTGGTCGTGCAT................................................... 19 2 3 5.67 17 7 9 1 0 0 0
................................................................................................CTTTTGTGGGTGGTGGTGCAT................................................... 21 2 2 5.50 11 10 0 1 0 0 0
........................................................CTTGTGGGTGGTGGTGCATGG........................................................................................... 21 2 2 5.50 11 9 2 0 0 0 0
....................................................................................................TTTGGGTGGTGGTGCATGGC................................................ 20 2 8 5.38 43 24 5 13 0 1 0
.....................................TTTGGGTGGTGGTGCATGGC............................................................................................................... 20 2 8 5.38 43 24 5 13 0 1 0
..........................................................TTTGGGTGGTGGTGCATGGC.......................................................................................... 20 2 8 5.38 43 24 5 13 0 1 0
..................................................................................................ATTGTGGGTGGTGGTGCAT................................................... 19 2 10 5.10 51 43 6 2 0 0 0
........................................................ATTGTGGGTGGTGGTGCAT............................................................................................. 19 2 10 5.10 51 43 6 2 0 0 0
.....................................................................................................TTGGGTGGTGGTGCATGGC................................................ 19 2 14 5.07 71 49 6 16 0 0 0
......................................TTGGGTGGTGGTGCATGGC............................................................................................................... 19 2 14 5.07 71 49 6 16 0 0 0
...........................................................TTGGGTGGTGGTGCATGGC.......................................................................................... 19 2 14 5.07 71 49 6 16 0 0 0
..................................................................................................TTTTTGGGTGGTGGTGCATGG................................................. 21 1 1 5.00 5 3 1 1 0 0 0
.................................................................................................TTTTTTGGGTGGTGGTGCATG.................................................. 21 2 1 5.00 5 4 1 0 0 0 0
..................................................................................................TTTGTGGGTGGTGGTGCATCGCC............................................... 23 3 1 5.00 5 1 1 3 0 0 0
..................................................................................................TTTATGGGTGGTGGTGCAT................................................... 19 1 1 5.00 5 2 3 0 0 0 0
..................................................................................................TTTGTGGGTTGTGGTGCAT................................................... 19 2 5 4.80 24 7 5 12 0 0 0
..........................................................TGTGGGTGGTGGTGCATGGT.......................................................................................... 20 2 10 4.70 47 22 5 20 0 0 0
....................................................................................................TGTGGGTGGTGGTGCATGGT................................................ 20 2 10 4.70 47 22 5 20 0 0 0
..................................................................................................TTTGTGGGTGGAGGTGCAT................................................... 19 2 3 4.67 14 2 11 1 0 0 0
..................................................................................................TTTGTGGGTGGCGGTGCAT................................................... 19 2 5 4.60 23 7 11 3 2 0 0
..................................................................................................TTTGTGGGTGGTGGTGCATT.................................................. 20 2 4 4.25 17 6 7 3 1 0 0
................................................................................................GATTTGTGGGTGGTGGTGCATG.................................................. 22 3 6 4.17 25 14 6 5 0 0 0
.......................................................TCTTGTGGGTGGTGGTGCATG............................................................................................ 21 3 7 4.14 29 13 10 5 1 0 0
..........................................GTGGTAGTGCAGCGGTTTT........................................................................................................... 19 2 1 4.00 4 3 1 0 0 0 0
.................................................................................................TTTTGTGGGTGGTGGTGCATC.................................................. 21 2 1 4.00 4 0 4 0 0 0 0
.................................................................................................ATATATGGGTGGTGGTGCAT................................................... 20 2 1 4.00 4 0 0 0 0 4 0
..................................................................................................TTTGTGGGTGGTGGTGCATGGTC............................................... 23 3 2 4.00 8 5 0 3 0 0 0
..................................................................................................TTTGTGGGTGGGGGTGCAT................................................... 19 2 6 4.00 24 13 8 1 2 0 0
..............................................................................TTGTGGGAGGTGGTGCAT........................................................................ 18 1 1 4.00 4 4 0 0 0 0 0
................................................................................................ATTTTTTGGGTGGTGGTGCAT................................................... 21 2 2 4.00 8 7 1 0 0 0 0
..................................................................................................TTTGTGGGTAGTGGTGCAT................................................... 19 2 3 3.67 11 3 4 3 1 0 0
..................................................................................................TTTGTGGGGGGTGGTGCAT................................................... 19 2 4 3.50 14 10 3 0 1 0 0
.............................................................................TTTGTGGGGGGTGGTGCAT........................................................................ 19 2 4 3.50 14 10 3 0 1 0 0
................................................................................................GATTTGTGGGTGGTGGTGCATGG................................................. 23 3 3 3.33 10 3 7 0 0 0 0
.......................................................GATTGTGGGTGGTGGTGCAT............................................................................................. 20 2 5 3.20 16 3 12 1 0 0 0
.....................................TGTGGGTGGTGGTGCATCGC............................................................................................................... 20 2 6 3.17 19 17 0 2 0 0 0
....................................................................................................TGTGGGTGGTGGTGCATCGC................................................ 20 2 6 3.17 19 17 0 2 0 0 0
..........................................................TGTGGGTGGTGGTGCATCGC.......................................................................................... 20 2 6 3.17 19 17 0 2 0 0 0
..................................................................................................TTTGTGGGTGGTTGTGCAT................................................... 19 2 6 3.17 19 7 4 8 0 0 0
...................................TTTGTGGGTGGTAGTGCAT.................................................................................................................. 19 2 4 3.00 12 2 8 2 0 0 0
..................................................................................................TTTGTGGGTGGTAGTGCAT................................................... 19 2 4 3.00 12 2 8 2 0 0 0
................................................................................................GATTTTTGGGTGGTGGTGCAT................................................... 21 1 1 3.00 3 2 1 0 0 0 0
............................................................................GTTTGTGGGTGGTGGTGCAT........................................................................ 20 2 6 3.00 18 18 0 0 0 0 0
........................................................GATTTGGGTGGTGGTGCAT............................................................................................. 19 2 2 3.00 6 3 3 0 0 0 0
.......................................................CCTTGTGGGTGGTGGTGCAT............................................................................................. 20 2 1 3.00 3 3 0 0 0 0 0
.......................................................GATTTTGGGTGGTGGTGCAT............................................................................................. 20 1 1 3.00 3 1 1 1 0 0 0
.................................................................................................ATTTTTGGGTGGTGGTGCAT................................................... 20 0 1 3.00 3 3 0 0 0 0 0
.................................................................................................GTTTGTGGGTGGTGGTGCAT................................................... 20 2 6 3.00 18 18 0 0 0 0 0
................................................................................................AATTTGTGGGTGGTGGTGCAT................................................... 21 2 1 3.00 3 3 0 0 0 0 0
.........................................................TTATGGGTGGTGGTGCAT............................................................................................. 18 1 2 3.00 6 4 0 2 0 0 0
..................................................................................................TTTGTGGGTGGTGATGCAT................................................... 19 2 2 3.00 6 1 4 0 1 0 0
....................................TTGTGGGTGGTAGTGCATGGC............................................................................................................... 21 2 2 3.00 6 0 6 0 0 0 0
..................................................................................................GATTTGGGTGGTGGTGCAT................................................... 19 2 2 3.00 6 3 3 0 0 0 0
..................................................................................................TTTCTGGGTGGTGGTGCA.................................................... 18 1 2 3.00 6 6 0 0 0 0 0
...................................................................................................TTATGGGTGGTGGTGCAT................................................... 18 1 2 3.00 6 4 0 2 0 0 0
.................................................................................................ATTTTTGGGTGGTGGTGCATG.................................................. 21 1 1 3.00 3 3 0 0 0 0 0
.......................................................GTTTGTGGGTGGTGGTGCAT............................................................................................. 20 2 6 3.00 18 18 0 0 0 0 0
..................................................................................................TTTGTGGGTGCTGGTGCAT................................................... 19 2 9 2.89 26 9 15 0 2 0 0
.................................................................................................CTTTGTGGGTGGTGGTGCA.................................................... 19 2 7 2.86 20 15 4 0 1 0 0
....................................................................................................TGTGGGTGGTGGTGCAT................................................... 17 1 11 2.82 31 0 0 0 31 0 0
..........................................................TGTGGGTGGTGGTGCAT............................................................................................. 17 1 11 2.82 31 0 0 0 31 0 0
....................................TTTTGGGTGGTGGTGCATGGC............................................................................................................... 21 2 5 2.80 14 8 1 5 0 0 0
.........................................................TTTTGGGTGGTGGTGCATGGC.......................................................................................... 21 2 5 2.80 14 8 1 5 0 0 0
...................................................................................................TTTTGGGTGGTGGTGCATGGC................................................ 21 2 5 2.80 14 8 1 5 0 0 0
..................................................................................................TTCGTGGGTGGTGGTGCAT................................................... 19 2 4 2.75 11 5 3 3 0 0 0
...................................................................................................TTTGGGGTGGTGGTGCAT................................................... 18 1 3 2.67 8 7 0 1 0 0 0
.........................................................TTTGGGGTGGTGGTGCAT............................................................................................. 18 1 3 2.67 8 7 0 1 0 0 0
..................................................................................................TTTGTGGGGGGTGGTGCATGG................................................. 21 3 14 2.64 37 37 0 0 0 0 0
..................................................................................................TTTGTGCGTGGTGGTGCAT................................................... 19 2 2 2.50 5 1 3 1 0 0 0
...........................................................TTGGGTGGTGGTGCATGGCT......................................................................................... 20 2 2 2.50 5 5 0 0 0 0 0
.........................................................TTGTGGGTGGTGGTGCATGGT.......................................................................................... 21 2 6 2.50 15 6 6 3 0 0 0
..................................................................................................TTTGTGAGTGGTGGTGCAT................................................... 19 2 2 2.50 5 2 3 0 0 0 0
......................................TTGGGTGGTGGTGCATGGCT.............................................................................................................. 20 2 2 2.50 5 5 0 0 0 0 0
...................................................................................................TTGTGGGTGGTGGTGCATGGT................................................ 21 2 6 2.50 15 6 6 3 0 0 0
.........................................................TTGTGGGTGGTGGTCCAT............................................................................................. 18 2 20 2.35 47 32 7 8 0 0 0
...................................................................................................TTGTGGGTGGTGGTCCAT................................................... 18 2 20 2.35 47 32 7 8 0 0 0
...................................................................................................TTGTGGGTGGTCGTGCAT................................................... 18 2 10 2.20 22 13 7 0 2 0 0
...................................................................................................TTCTGGGTGGTGGTGCATG.................................................. 19 2 5 2.20 11 9 1 1 0 0 0
....................................TTGTGGGTGGTCGTGCAT.................................................................................................................. 18 2 10 2.20 22 13 7 0 2 0 0
.........................................................TTCTGGGTGGTGGTGCATG............................................................................................ 19 2 5 2.20 11 9 1 1 0 0 0
.........................................................TTGTGGGTGGTCGTGCAT............................................................................................. 18 2 10 2.20 22 13 7 0 2 0 0
..................................................................................................TTTGTGGGTGGTGTTGCAT................................................... 19 2 10 2.10 21 15 4 2 0 0 0
..........................................................TTTGGGTGGTGGTGCATGGCC......................................................................................... 21 3 12 2.08 25 15 2 4 0 4 0
....................................................................................................TTTGGGTGGTGGTGCATGGCC............................................... 21 3 12 2.08 25 15 2 4 0 4 0
.....................................TTTGGGTGGTGGTGCATGGCC.............................................................................................................. 21 3 12 2.08 25 15 2 4 0 4 0
............................................................TGGGTGGTGGTGCATGGTT......................................................................................... 19 1 1 2.00 2 2 0 0 0 0 0
.............................................................................TTTTTGGGAGGTGGTGCATG....................................................................... 20 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................TTTATGGGTGGTGGTGCATG.................................................. 20 2 1 2.00 2 0 0 0 1 1 0
..................................................................................................TTTCTGGGTGGTGGTGCATGGC................................................ 22 3 2 2.00 4 2 2 0 0 0 0
.................................................................................................ATCTATGGGTGGTGGTGCATC.................................................. 21 2 1 2.00 2 0 0 0 1 1 0
...................................................................................................TTCTGGGTGGTGGTGCATGG................................................. 20 2 3 2.00 6 5 1 0 0 0 0
..........................................................TGTGGGTGGTGGTGCATGGTT......................................................................................... 21 2 1 2.00 2 0 0 2 0 0 0
.........................................................TTCTGGGTGGTGGTGCATGG........................................................................................... 20 2 3 2.00 6 5 1 0 0 0 0
..................................................................................................TTTTGGGGTGGTGGTGCAT................................................... 19 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................TTTATGGGTGGTGGTGCATGG................................................. 21 2 1 2.00 2 0 1 0 1 0 0
.................................................................................................TTTTTTGGGTGGTGGTGCATGG................................................. 22 2 1 2.00 2 1 1 0 0 0 0
..................................................................................................TTTGTGGGTGGTGGTGCATC.................................................. 20 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................TTTGTGGGAGGTGGTGCATGG................................................. 21 3 10 1.90 19 19 0 0 0 0 0
.............................................................................TTTGTGGGAGGTGGTGCATGG...................................................................... 21 3 10 1.90 19 19 0 0 0 0 0
....................................................................................................TCTGGGTGGTGGTGCATGG................................................. 19 2 5 1.80 9 3 2 4 0 0 0
..........................................................TCTGGGTGGTGGTGCATGG........................................................................................... 19 2 5 1.80 9 3 2 4 0 0 0
....................................TTGTGGGTGGTAGTGCATG................................................................................................................. 19 2 5 1.80 9 2 6 1 0 0 0
......................................TTGGGTGGTGGTGCATGGCTGT............................................................................................................ 22 3 4 1.75 7 5 1 1 0 0 0
...........................................................TTGGGTGGTGGTGCATGGCTGT....................................................................................... 22 3 4 1.75 7 5 1 1 0 0 0
..................................................................................................TTTGTGGGTGGTGGTGCATA.................................................. 20 2 3 1.67 5 4 1 0 0 0 0
..................................................................................................TTTGTTGGTGGTGGTGCAT................................................... 19 2 14 1.64 23 5 7 11 0 0 0
.................................................................................................CTTTGTGGGTGGTGGTGCATG.................................................. 21 3 11 1.64 18 13 3 1 1 0 0
..........................................................TGTGGGTGGTGGTGCATCG........................................................................................... 19 1 2 1.50 3 0 2 0 1 0 0
...................................................................................................TTGTGGGTGGTGGTGCATC.................................................. 19 1 2 1.50 3 2 1 0 0 0 0
.................................................................................................TTTTCTGGGTGGTGGTGCAT................................................... 20 2 2 1.50 3 2 1 0 0 0 0
...............................................................................................TATTTTGTGGGTGGTGGTGCAT................................................... 22 3 2 1.50 3 1 2 0 0 0 0
....................................TTGTGGGTGGTAGTGCATGG................................................................................................................ 20 2 2 1.50 3 0 3 0 0 0 0
................................................................................................GATTTGTGGGTGGTGGTGCA.................................................... 20 2 6 1.50 9 8 1 0 0 0 0
.........................................................TTGTGGGTGGTGGTGCATC............................................................................................ 19 1 2 1.50 3 2 1 0 0 0 0
..............................................................................................TTGATTTGTGGGTGGTGGTGCAT................................................... 23 3 2 1.50 3 1 2 0 0 0 0
..................................................................................................TTTGTGGGTGGTGGTTCATG.................................................. 20 3 20 1.50 30 17 12 0 1 0 0
....................................................................................................TGTGGGTGGTGGTGCATCG................................................. 19 1 2 1.50 3 0 2 0 1 0 0
.......................................................TCTTGTGGGTGGTGGTGCATGG........................................................................................... 22 3 5 1.40 7 2 4 1 0 0 0
....................................................................................................TCTGGGTGGTGGTGCATG.................................................. 18 2 15 1.40 21 17 1 2 1 0 0
..................................................................................................TTTGTAGGTGGTGGTGCAT................................................... 19 2 5 1.40 7 4 0 2 1 0 0
..........................................................TCTGGGTGGTGGTGCATG............................................................................................ 18 2 15 1.40 21 17 1 2 1 0 0
.....................................TGTGGGTGGTAGTGCATGGC............................................................................................................... 20 2 5 1.40 7 2 2 3 0 0 0
...................................................................................................TTGTGGGTTGTGGTGCAT................................................... 18 2 20 1.35 27 15 3 9 0 0 0
.........................................................TTGTGGGTTGTGGTGCAT............................................................................................. 18 2 20 1.35 27 15 3 9 0 0 0
.......................................TGGGTGGTGGTGCATCGC............................................................................................................... 18 1 3 1.33 4 2 1 1 0 0 0
............................................................TGGGTGGTGGTGCATCGC.......................................................................................... 18 1 3 1.33 4 2 1 1 0 0 0
.....................................................TTGATTGTGGGTGGTGGTGCAT............................................................................................. 22 3 3 1.33 4 2 2 0 0 0 0
......................................................................................................TGGGTGGTGGTGCATCGC................................................ 18 1 3 1.33 4 2 1 1 0 0 0
.....................................TGTGGGTGGTAGTGCATGG................................................................................................................ 19 2 7 1.29 9 6 2 1 0 0 0
............................................................................TTTTGTGGGAGGTGGTGCAT........................................................................ 20 2 4 1.25 5 4 0 1 0 0 0
..................................................................................................TTTGTGGGTGGTGGAGCAT................................................... 19 2 4 1.25 5 1 2 1 1 0 0
.................................................................................................ATCTATGGGTGGTGGTGCATTG................................................. 22 3 4 1.25 5 1 0 1 0 0 3
................................................................................................GATTTGTGGGTGGTGGTGC..................................................... 19 2 18 1.22 22 22 0 0 0 0 0
....................................................................................................TGTGGGTGGTGGTGCATGGTC............................................... 21 3 15 1.20 18 10 4 3 1 0 0
..........................................................TGTGGGTGGTGGTGCATGGTC......................................................................................... 21 3 15 1.20 18 10 4 3 1 0 0
.........................................................TTTTGGGTGGTGGTGCATGGCC......................................................................................... 22 3 7 1.14 8 6 0 2 0 0 0
....................................TTTTGGGTGGTGGTGCATGGCC.............................................................................................................. 22 3 7 1.14 8 6 0 2 0 0 0
...................................................................................................TTTTGGGTGGTGGTGCATGGCC............................................... 22 3 7 1.14 8 6 0 2 0 0 0
...................................................................................................TTGTGGGTGGCGGTGCAT................................................... 18 2 20 1.10 22 15 5 2 0 0 0
.........................................................TTGTGGGTGGCGGTGCAT............................................................................................. 18 2 20 1.10 22 15 5 2 0 0 0
..................................................................................................TTTGTGTGTGGTGGTGCAT................................................... 19 2 11 1.09 12 4 0 8 0 0 0
..................................................................................................TTTGTGGGTGGTGGTGCAC................................................... 19 2 11 1.09 12 1 3 4 2 2 0
......................................GTGGGTGGTGGTGCATCGC............................................................................................................... 19 2 12 1.08 13 12 0 1 0 0 0
.....................................................................................................GTGGGTGGTGGTGCATCGC................................................ 19 2 12 1.08 13 12 0 1 0 0 0
...........................................................GTGGGTGGTGGTGCATCGC.......................................................................................... 19 2 12 1.08 13 12 0 1 0 0 0
................................................................................................AATCTATGGGTGGTGGTGCATCG................................................. 23 3 1 1.00 1 0 0 0 1 0 0
.................................................................................................ATTTTGGGGTGGTGGTGC..................................................... 18 1 1 1.00 1 1 0 0 0 0 0
....................................TTGTGGGTGGTAGTGCATTGC............................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0
................................................................................................GATTTTGGGGTGGTGGTGCAT................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.......................................................GCTTGTGGGTGGTGGTGCAT............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
................................................................................................CATCTATGGGTGGTGGTGCATG.................................................. 22 3 1 1.00 1 0 0 0 0 1 0
....................................................................................................TATGGGTGGTGGTGCAT................................................... 17 1 3 1.00 3 0 0 0 3 0 0
................................................................................................CTTTTATGGGTGGTGGTGCATG.................................................. 22 3 1 1.00 1 0 0 1 0 0 0
..................................................................................................TTTGTGGGTGGTGGTGCATGGG................................................ 22 3 7 1.00 7 6 0 0 1 0 0
.................................................................................................ATTTCTGGGTGGTGGTGCATG.................................................. 21 2 1 1.00 1 0 0 1 0 0 0
...........................................................GTGGGTGGTGGTGCATGGTTT........................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TCTATGGGTGGTGGTGCATC.................................................. 20 2 1 1.00 1 1 0 0 0 0 0
.............................................................................TTTGTGGGAGGTGGTGCA......................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................ATTTTGGGGTGGTGGTGCATG.................................................. 21 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TTTGCGGGTGGTGGTGCAT................................................... 19 2 10 1.00 10 5 2 2 1 0 0
.........................................................TTTTGGGTGGTGGTGCATGGCT......................................................................................... 22 2 2 1.00 2 1 0 1 0 0 0
.................................................................................................ATTTTTGGGTGGTGGTTCATGGC................................................ 23 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................TGATTTTTGGGTGGTGGTGCA.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
........................................................CTTTTGGGTGGTGGTGCAT............................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
................................................................................................GATTTCTGGGTGGTGGTGCAT................................................... 21 2 1 1.00 1 1 0 0 0 0 0
................................................................................................GATTTTTGGGTTGTGGTGCAT................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.........................................................CTTTGGGTGGTGGTGCAT............................................................................................. 18 1 2 1.00 2 1 0 1 0 0 0
..................................................................................................TCTTTGGGTGGTGGTGCA.................................................... 18 1 1 1.00 1 1 0 0 0 0 0
.......................................................GCTTGTGGGTGGTGGTGCATG............................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0
..........................................................TTTGGGTGGTGGTGCATGGCT......................................................................................... 21 2 2 1.00 2 1 0 1 0 0 0
..................................................................................................TTTTGGGGTGGTGGTGCATG.................................................. 20 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................TTTTGTGGGTGGTGGTCCATCG................................................. 22 3 1 1.00 1 0 0 0 1 0 0
..........................................GTGGTAGTGCAGCGGTTTTG.......................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................ATTTTGTGGTGGTGGTGCAT................................................... 20 2 3 1.00 3 2 0 1 0 0 0
.........................................................TTGTGGGTGGTGGTGCATGGGTT........................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0
.........................................................TTGTGGGTGGTGGTGCATGGTT......................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.....................................TTTGGGTGGTGGTGCATGGCT.............................................................................................................. 21 2 2 1.00 2 1 0 1 0 0 0
.................................................................................................ATTTTTGGGTGGTGGTGC..................................................... 18 0 1 1.00 1 1 0 0 0 0 0
.....................................................ACGCTTGTGGGTGGTGGTGCAT............................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.......................................TGGGTGGTAGTGCATGGCTGT............................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0
..........................................................TATGGGTGGTGGTGCAT............................................................................................. 17 1 3 1.00 3 0 0 0 3 0 0
..................................................................................................TTTGTGGGTGGTGGTGCATGC................................................. 21 3 13 1.00 13 7 4 0 2 0 0
.............................................................................TTTGTGGGAGGTGGTGCATGGTT.................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
.................................................................................................ATGTTTGGGTGGTGGTGCAT................................................... 20 1 1 1.00 1 0 0 1 0 0 0
............................................................................GTTTGTGGGAGGTGGTGCAT........................................................................ 20 1 1 1.00 1 1 0 0 0 0 0
.............................................................................TTTGTGGGAGGTGGTGCATT....................................................................... 20 2 1 1.00 1 0 0 1 0 0 0
.................................................................................................ATTTTTGGGTGGTGGTGCATGGCC............................................... 24 3 1 1.00 1 0 0 1 0 0 0
.................................................................................................ATCTTTGGGTGGTGGTGCATG.................................................. 21 2 2 1.00 2 0 0 0 2 0 0
.................................................................................................ATTTATGGGTGGTGGTGCATGG................................................. 22 2 1 1.00 1 0 0 0 0 1 0
................................................................................................CATCTATGGGTGGTGGTGCATGG................................................. 23 3 1 1.00 1 0 0 0 0 1 0
..................................................................................................TTGTTGGGTGGTGGTGCAT................................................... 19 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................ATTTCTGGGTGGTGGTGCATCGCC............................................... 24 3 1 1.00 1 0 1 0 0 0 0
....................................TTTTGGGTGGTGGTGCATGGCT.............................................................................................................. 22 2 2 1.00 2 1 0 1 0 0 0
.................................................................................................CTTTTTGGGTGGTGGTGCAT................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TTTGTGGGTGGTGGTGCATAGC................................................ 22 3 3 1.00 3 1 0 1 1 0 0
.................................................................................................ATTTATGGGTGGTGGTGCATG.................................................. 21 2 1 1.00 1 0 0 0 1 0 0
...................................................................................................TTGTGGGTGGTGGTGCATCG................................................. 20 1 2 1.00 2 1 0 0 1 0 0
...............................................................................................GATTTTTTGGGTGGTGGTGCAT................................................... 22 3 3 1.00 3 1 1 1 0 0 0
...............................................................................................GAATTTGTGGGTGGTGGTGCAT................................................... 22 3 3 1.00 3 2 1 0 0 0 0
...........................................................GTGGGTGGTGGTGCATGGTT......................................................................................... 20 2 2 1.00 2 2 0 0 0 0 0
.................................................................................................ATTTGTGGGTGGTGGAGCAT................................................... 20 2 2 1.00 2 0 2 0 0 0 0
.............................................................................................CTTGATTTTTGGGTGGTGGTGCATG.................................................. 25 3 1 1.00 1 1 0 0 0 0 0
.................................................................................................ATATATGGGTGGTGGTGCATG.................................................. 21 3 5 1.00 5 0 0 1 1 3 0
...................................................................................................CTTTGGGTGGTGGTGCAT................................................... 18 1 2 1.00 2 1 0 1 0 0 0
..............................................................................TTTTGGGAGGTGGTGCAT........................................................................ 18 0 1 1.00 1 1 0 0 0 0 0
.........................................................TTGTGGGTGGTGGTGCATCG........................................................................................... 20 1 2 1.00 2 1 0 0 1 0 0
..................................................................................................TTTTTGGGTGCTGGTGCA.................................................... 18 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................ATTTTGGGGTGGTGGTGCAT................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.........................................................TTGTGTGTGGTGGTGCAT............................................................................................. 18 2 20 0.95 19 12 2 5 0 0 0
...................................................................................................TTGTGTGTGGTGGTGCAT................................................... 18 2 20 0.95 19 12 2 5 0 0 0
...................................................................................................TTGTGGGTAGTGGTGCAT................................................... 18 2 11 0.91 10 6 4 0 0 0 0
.........................................................TTGTGGGTAGTGGTGCAT............................................................................................. 18 2 11 0.91 10 6 4 0 0 0 0
...................................................................................................TTGTGGGTGGGGGTGCAT................................................... 18 2 20 0.90 18 10 6 1 1 0 0
.........................................................TTGTGGGTGGGGGTGCAT............................................................................................. 18 2 20 0.90 18 10 6 1 1 0 0
..................................................................................................TTTGTGGGTGGTGCTGCAT................................................... 19 2 7 0.86 6 1 2 2 1 0 0
..................................................................................................TTTGTGGGTGGTGGTGCATTGC................................................ 22 3 7 0.86 6 2 2 1 0 0 1
.................................................................................................CTTTGTGGGTGGTGGTGCATGG................................................. 22 3 7 0.86 6 5 1 0 0 0 0
...................................................................................................TCGTGGGTGGTGGTGCAT................................................... 18 2 20 0.85 17 16 0 0 1 0 0
.........................................................TCGTGGGTGGTGGTGCAT............................................................................................. 18 2 20 0.85 17 16 0 0 1 0 0
..............................................................................TTGTGGGGGGTGGTGCAT........................................................................ 18 2 13 0.85 11 11 0 0 0 0 0
...................................................................................................TTGTGGGGGGTGGTGCAT................................................... 18 2 13 0.85 11 11 0 0 0 0 0
.........................................................TTGTGGGGGGTGGTGCAT............................................................................................. 18 2 13 0.85 11 11 0 0 0 0 0
..................................................................................................TTTGTGGGTGGTGGGGCAT................................................... 19 2 12 0.83 10 4 3 2 1 0 0
.........................................................TTGTGGGTGGTGGTGCATCGCC......................................................................................... 22 3 5 0.80 4 2 1 1 0 0 0
.............................................................................................CTTGATTTGTGGGTGGTGGTGC..................................................... 22 3 5 0.80 4 4 0 0 0 0 0
...................................................................................................TTGTGGGTGGTGGTGCATCGCC............................................... 22 3 5 0.80 4 2 1 1 0 0 0
....................................TTGTGGGTGGTGGTGCATCGCC.............................................................................................................. 22 3 5 0.80 4 2 1 1 0 0 0
...................................TTTGTGGGTGGTAGTGCATGGC............................................................................................................... 22 3 5 0.80 4 1 2 1 0 0 0
.........................................AGTGGTAGTGCAGCGGTTTTG.......................................................................................................... 21 3 5 0.80 4 4 0 0 0 0 0

Anti-sense strand reads

----------------########################################################################################################################################################
CTCCTGGATATAGTAAAATCCCTCCCCCACGTAGCGAAAACCCACCATCACGTAGCGAAAACCCACCACCACGTAGCAAAAACCCTCCACCACGTAGTAAAAACCCACCACCACGTAGCATAAACCCACCACCATAGAGTAGCAAGAACCCACCACCACGACCACGTC
************************************......((((((((((.((.((.((((((((((((((((...)))))))))))))))).)).)).))))))))))...............****************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V055
head
..................................................................CACCACGCAGCAAAAACC.................................................................................... 18 1 1 1.00 1 1 0 0
..............................................................CCACCACCACACAGCAAAAA...................................................................................... 20 2 3 0.33 1 1 0 0
...............................................................................................................................ACCACCATAGAGTAGTAAA...................... 19 2 3 0.33 1 1 0 0
..............................................................................................................................CACCACCAGAGAGAAGGAAGAA.................... 22 3 4 0.25 1 1 0 0
.........................................................................................CCACGTAGTAAGAATCCAAC........................................................... 20 3 5 0.20 1 1 0 0
.......................................................CCAAAACCCACTACCAGGTAG............................................................................................ 21 3 5 0.20 1 1 0 0
............................................................ACCACCCACCACGGAGCAAAA....................................................................................... 21 3 6 0.17 1 1 0 0
...................................................................................................................................CTATAGCGTAGCAAGAAC................... 18 2 6 0.17 1 1 0 0
..............................................................CCACCACCAGGTAGAAAAA....................................................................................... 19 2 7 0.14 1 1 0 0
........................................................................................................CCACAACCACGTCGCATA.............................................. 18 2 8 0.13 1 1 0 0
..........................................................................................................ACCACCACTCAGCATAAAAC.......................................... 20 3 8 0.13 1 1 0 0
...............................................................CACCACCACCTCGCAAAAA...................................................................................... 19 2 11 0.09 1 1 0 0
..................................................................................................................................AGCATAGAGAAGCAAGAA.................... 18 2 12 0.08 1 0 0 1
.............................................................CCCACCCCCACGGATCAAAA....................................................................................... 20 3 14 0.07 1 1 0 0
...........................................................................................................................................TAGTAAGAACCGAGCACCA.......... 19 3 15 0.07 1 0 1 0
..............................................................................................TAGTAAGAACCGAGCACCA....................................................... 19 3 15 0.07 1 0 1 0
......................................................................................CCACCACACAGTAAAAAC................................................................ 18 2 15 0.07 1 1 0 0
......................................................................................CCACCATGTAGTAAAAAA................................................................ 18 2 17 0.06 1 1 0 0
..............................................................CCACCACCACGGAGAAAAA....................................................................................... 19 2 17 0.06 1 1 0 0
.............................................................CCCACCCCCACGGAACAAAA....................................................................................... 20 3 19 0.05 1 0 1 0
...............................................................CACCACCCCATCGCAAAAA...................................................................................... 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12916:11304238-11304405 + dan_298 GAGGA---CCTATATCAT-----TTTAGGGAGGGGGTGCATCG---CTTTTGGGTGGTAGTGCATCGCTTTTGGGTGGTGGTGCATCGTTTTTGGGAGGTGGTGCATCATTTTTGGGTGGTGGTGCA---------------------------------TCGTATTTGGGTGGTGGTATCTCATCGTTCT--------------------------------------------------------------TGGGTGGTGGTGCTGGTGCAG
droBip1 scf7180000396572:963253-963369 + ATCATTT-T--TGGGTG---------------------------------------GA-----------------------------------------------------------------------------------------------------------------CTTTCATATTTGGGTGGACTATCATTTTTGGGTGGACTATCATTTTTGGGTGGACTATCATTTTTGGGTGGACTATCATTTTTGGGTTGTGAAGC--ACCCAG
droKik1 scf7180000302679:1044151-1044181 + TTGTC---GTTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGTGGCGGCGGCGGTGCGA
droFic1 scf7180000453851:1316362-1316466 + GCTTATG-G--GTCGAAATCCTATG----------------GT---GCTTGGGGTGGTGGCGCTGGTGGTGGTGGTGCTGGTGCAGCTGGTGCGG---------------------------------------------------------------------------ATGGTGGTGTCCAGTCCTATG-----------------------------------------------------------TCGATGGTGGT-------------
droEle1 scf7180000491232:391373-391413 - CATCGTC-C--TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GGAGGTCGTGTCTCATAGCTCT--------------------------------------------------------------TGGGTCGT-------------
droRho1 scf7180000779333:301634-301766 - CTGGA---CTTTCCTCTT-----A---CGGCGGCGGTGCTAAGGCTTCCTACGGCGGTGGAGCAGCTGCTTACGGTGGTGGTGCCGGATCTTATGGCGGTGGTGCCGGATCTTATGGCGGTGGTGCT---------------------------------GGATCTTATGGCG-------------------------------------------------------------------------------------------------GCGG
droBia1 scf7180000302156:45699-45719 + TCGGACG-ACTATATCAT-----AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA
droTak1 scf7180000415274:72126-72182 + GTGCGTT-G--CATGTA--------------------------------------------------------------------------------------------------------------------------------------------------------TGTATGTATGTGTTGTTGTGCT--------------------------------------------------------------GTAGTGGTGGTGGTAGTGCGG
droEug1 scf7180000409005:1129805-1129822 - GTGTA---TCTATCAGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-------------
droSim2 3l:22513724-22513739 - AAAAA---ACTTTACATT-----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrX_random_026:390-449 + GTGGCGGTG--CTCGAAA---------------------------------------------------------------------------------------------------------------------------------------------------CCTCAAGAATGATGTCTCACCTCTGA--------------------------------------------------------------TGGGCGGT---GGTGGTGGTG
droPer2 scaffold_2094:3517-3648 + GGAAGCG-A--AGTATTG-----CT----------------CT---CCTTCAGGAGATGGGTCAAGGCACTTGGGTGTAGTTATATCTTCCTTTGAAGATGACTTATCACCTTTGTGTGCGGGCT----------------------------------------TGCCGTCGGCAATTTCTTCTCCA--------------------------------------------------------------CTTTGGATGAT-------------
droWil2 scf2_1100000004943:3671628-3671806 - GAGCA---GCTCCCTCAG-----CTGGTGGAGCAGG------AGCTCCTTCAGCTGGTGGAGCAGCTCCCTCAGCCGCTGGGGCAGCACCCTCAGCCGCCGGGGCAGCACCCTCAGCTGCAGGAGCCGCTTCTCCTTCAACAACTGGAGCTGGCTCTGGCTCAGATCCGGGTGGTGGTGGCTCATAGTTCT--------------------------------------------------------------TG-------------------
droVir3 scaffold_11685:56-183 + GTTCGTA-G--TTTGTAG-----TT------------------------------GGTAGTTTGTAGTTGGTAGTTGGTAGTTTGTAGTTTGTAGTTTGTAGTTTGTAGTTTGTAGTTTGTAGTTTG---------------------------------TAGTTTGTAGTTTGTAGTTTGTAGTTTG--------------------------------------------------------------TAGTTTGTAGT-------------
droMoj3 scaffold_6496:25289670-25289709 + ATCTCCT---TT------------------------------------------------------------------------------------------------------------------------------------------------------------GGGTGGAGATAGCTCGTTGGACT--------------------------------------------------------------TGGGTGGT-------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GAGGA---CCTATATCAT-----TTTAGGGAGGGGGTGCATCG---CTTTTGGGTGGTAGTGCATCGCTTTTGGGTGGTGGTGCATCGTTTTTGGGAGGTGGTGCATCATTTTTGGGTGGTGGTGCA---------------------------------TCGTATTTGGGTGGTGGTATCTCATCGTTCT--------------------------------------------------------------TGGGTGGTGGTGCTGGTGCAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................TTTTGGGTGGTGGTGCAT............................................................................................................................................................................................18266.00132100000527
..............................................................................................................TTTTGGGTGGTGGTGCA---------------------------------T.................................................................................................................18266.00132100000527
.............................................................................................................TTTTTGGGTGGTGGTGCA---------------------------------T.................................................................................................................19156.00564800053
.....................................................................TTTGGGTGGTGGTGCATG...........................................................................................................................................................................................18250.501018530067
...............................................................................................................TTTGGGTGGTGGTGCA---------------------------------TG................................................................................................................18250.501018530067
.............................................................................................................TTTTTGGGTGGTGGTGCA---------------------------------TG................................................................................................................20118.00181600011
....................................................................TTTTGGGTGGTGGTGCATG...........................................................................................................................................................................................19217.50353000014
..............................................................................................................TTTTGGGTGGTGGTGCA---------------------------------TG................................................................................................................19217.50353000014
.............................................................................................................TTTTTGGGTGGTGGTGCA---------------------------------..................................................................................................................1817.007600001
............................................................................................................ATTTTTGGGTGGTGGTGCA---------------------------------T.................................................................................................................2013.003300000
............................................................................................................ATTTTTGGGTGGTGGTGCA---------------------------------TG................................................................................................................2113.003300000
........................................................................................TTTTTGGGAGGTGGTGCATG......................................................................................................................................................................2012.002200000
.......................................................................TGGGTGGTGGTGCATCGC.........................................................................................................................................................................................1831.334200011
.................................................................................................................TGGGTGGTGGTGCA---------------------------------TCGC..............................................................................................................1831.334200011
...................................................................CTTTTGGGTGGTGGTGCAT............................................................................................................................................................................................1911.001100000
............................................................................................................ATTTTTGGGTGGTGGTGC....................................................................................................................................................1811.001100000
.........................................................................................TTTTGGGAGGTGGTGCAT.......................................................................................................................................................................1811.001100000
droBip1
ATCATTT-T--TGGGTG---------------------------------------GA-----------------------------------------------------------------------------------------------------------------CTTTCATATTTGGGTGGACTATCATTTTTGGGTGGACTATCATTTTTGGGTGGACTATCATTTTTGGGTGGACTATCATTTTTGGGTTGTGAAGC--ACCCAGSizeHit CountTotal NormTotal
No Reads
droKik1
TTGTC---GTTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGTGGCGGCGGCGGTGCGASizeHit CountTotal NormTotal
No Reads
droFic1
GCTTATG-G--GTCGAAATCCTATG----------------GT---GCTTGGGGTGGTGGCGCTGGTGGTGGTGGTGCTGGTGCAGCTGGTGCGG---------------------------------------------------------------------------ATGGTGGTGTCCAGTCCTATG-----------------------------------------------------------TCGATGGTGGT-------------SizeHit CountTotal NormTotal
No Reads
droEle1
CATCGTC-C--TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GGAGGTCGTGTCTCATAGCTCT--------------------------------------------------------------TGGGTCGT-------------SizeHit CountTotal NormTotal
No Reads
droRho1
CTGGA---CTTTCCTCTT-----A---CGGCGGCGGTGCTAAGGCTTCCTACGGCGGTGGAGCAGCTGCTTACGGTGGTGGTGCCGGATCTTATGGCGGTGGTGCCGGATCTTATGGCGGTGGTGCT---------------------------------GGATCTTATGGCG-------------------------------------------------------------------------------------------------GCGGSizeHit CountTotal NormTotal
No Reads
droBia1
TCGGACG-ACTATATCAT-----AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TASizeHit CountTotal NormTotal
No Reads
droTak1
GTGCGTT-G--CATGTA--------------------------------------------------------------------------------------------------------------------------------------------------------TGTATGTATGTGTTGTTGTGCT--------------------------------------------------------------GTAGTGGTGGTGGTAGTGCGGSizeHit CountTotal NormTotal
No Reads
droEug1
GTGTA---TCTATCAGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-------------SizeHit CountTotal NormTotal
No Reads
droSim2
AAAAA---ACTTTACATT-----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droYak3
GTGGCGGTG--CTCGAAA---------------------------------------------------------------------------------------------------------------------------------------------------CCTCAAGAATGATGTCTCACCTCTGA--------------------------------------------------------------TGGGCGGT---GGTGGTGGTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............CGAAA---------------------------------------------------------------------------------------------------------------------------------------------------CCTCAAGAATGATGTCT............................................................................................2211.00101000000000
droPer2
GGAAGCG-A--AGTATTG-----CT----------------CT---CCTTCAGGAGATGGGTCAAGGCACTTGGGTGTAGTTATATCTTCCTTTGAAGATGACTTATCACCTTTGTGTGCGGGCT----------------------------------------TGCCGTCGGCAATTTCTTCTCCA--------------------------------------------------------------CTTTGGATGAT-------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..AAGCG-A--AGTATTG-----CT----------------CT---CCTTCAGG............................................................................................................................................................................................................................25200.50100100000
................TG-----CT----------------CT---CCTTCAGGAGATGGGTCAAGG...............................................................................................................................................................................................................27200.408080000
........................T----------------CT---CCTTCAGGAGATGGGTCAAGGCACT...........................................................................................................................................................................................................28200.204040000
.................................................TCAGGAGATGGGTCAAGGC..............................................................................................................................................................................................................19200.153030000
..AAGCG-A--AGTATTG-----CT----------------CT---CCTTCAG.............................................................................................................................................................................................................................24200.153030000
.................................................TCAGGAGATGGGTCAAGGCACTTGGG.......................................................................................................................................................................................................26200.102020000
..............ATTG-----CT----------------CT---CCTTCAGGAGAT........................................................................................................................................................................................................................20200.051010000
.......................CT----------------CT---CCTTCAGGAGATGGGTCAAGG...............................................................................................................................................................................................................25200.051010000
..AAGCG-A--AGTATTG-----CT----------------CT---CCTT................................................................................................................................................................................................................................21200.051010000
.................................................TCAGGAGATGGGTCAAGGCACTT..........................................................................................................................................................................................................23200.051010000
...................................................................................TATCTTCCTTTGAAGATGACTTATCACC...................................................................................................................................................................28200.051010000
................................................TTCAGGAGATGGGTCAAGGC..............................................................................................................................................................................................................20200.051010000
.............TATTG-----CT----------------CT---CCTTCAGGAGATGGG.....................................................................................................................................................................................................................24200.051010000
.............TATTG-----CT----------------CT---CCTTCAGGAGATGGGTC...................................................................................................................................................................................................................26200.051010000
..........................................T---CCTTCAGGAGATGGGTC...................................................................................................................................................................................................................18200.051010000
...................................................................................TATCTTCCTTTGAAGATGACTTAT.......................................................................................................................................................................24200.051010000
.........................................................TGGGTCAAGGCACTTGGGTGTAGTT................................................................................................................................................................................................25200.051010000
..........................................T---CCTTCAGGAGATGGGTCAAG................................................................................................................................................................................................................21200.051010000
.......................................................GATGGGTCAAGGCACTTGGGTGTAGT.................................................................................................................................................................................................26200.051000001
.....CG-A--AGTATTG-----CT----------------CT---CCTTCAGGAGA.........................................................................................................................................................................................................................25200.051010000
......G-A--AGTATTG-----CT----------------CT---CCTTCAGGAGA.........................................................................................................................................................................................................................24200.051010000
...AGCG-A--AGTATTG-----CT----------------CT---CCTTCAGG............................................................................................................................................................................................................................24200.051010000
.........................................................TGGGTCAAGGCACTTGGGTGTAGTTA...............................................................................................................................................................................................26200.051010000
..............................................CCTTCAGGAGATGGGTCAAGGCA.............................................................................................................................................................................................................23200.051010000
.......................................................GATGGGTCAAGGCACTTGGGTGTAG..................................................................................................................................................................................................25200.051000001
................................................TTCAGGAGATGGGTCAAGG...............................................................................................................................................................................................................19200.051010000
droWil2
GAGCA---GCTCCCTCAG-----CTGGTGGAGCAGG------AGCTCCTTCAGCTGGTGGAGCAGCTCCCTCAGCCGCTGGGGCAGCACCCTCAGCCGCCGGGGCAGCACCCTCAGCTGCAGGAGCCGCTTCTCCTTCAACAACTGGAGCTGGCTCTGGCTCAGATCCGGGTGGTGGTGGCTCATAGTTCT--------------------------------------------------------------TG-------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GTTCGTA-G--TTTGTAG-----TT------------------------------GGTAGTTTGTAGTTGGTAGTTGGTAGTTTGTAGTTTGTAGTTTGTAGTTTGTAGTTTGTAGTTTGTAGTTTG---------------------------------TAGTTTGTAGTTTGTAGTTTGTAGTTTG--------------------------------------------------------------TAGTTTGTAGT-------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
ATCTCCT---TT------------------------------------------------------------------------------------------------------------------------------------------------------------GGGTGGAGATAGCTCGTTGGACT--------------------------------------------------------------TGGGTGGT-------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................TAGCTCGTTGGACT--------------------------------------------------------------TGGGTGG..............21200.051100000

Generated: 05/15/2015 at 03:27 PM