ID:

dan_2964

 Coordinate:

scaffold_13340:7926241-7926498 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-43.7 -43.6 -43.4

Flybase annnotation

CDS [Dana\GF17989-cds]; CDS [Dana\GF17989-cds]; exon [dana_GLEANR_19249:1]; exon [dana_GLEANR_19249:2]; intron [Dana\GF17989-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAGCCCGGAAACTACAAACGCGCCACAAAGCGAATCGAAGATGGCTACAAGTAAGTTTTCTTTAAAAAAAAAAAACCGGACTAAACGCAGAGAGAAAAGCTAAGCTCAGAACTCCACTTTCTATCACGCATCTGACCAGACAAAAAAAAAAATAAAACTCAATGAATTTTATAGTTTTTTTTATAGTTTTTCTCTCTCTGTATAAACACTTGTCCCGCTGGGTCATTGCCAGCTGAATCCGTCGAAACCCAAACCCAAAACCCAAACCGGTTTGCATTATTATGATTTTTGTCTCATTCCGTACGCAGACTCTGCAATGACCTACAGCAACTGGTGCAGGAGCGAGCCGACATCGAGA
**************************************************....(((((.(((....))).)))))((((....(((.((((((((((((((...(((((....................)))))......((((((((..((((((.((...)).))))))..)))))))).)))))))))))))).)))...........((..(((((.......))))).)).............((((((.............)))))).......((((........)))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 M058
embryo
 M044
female body
 V055
head
 V105
male body		 V039
embryo
...........................................................................................................................................................................................................................................................................................................................................TGGTGCAGGAGCGAGCCGAC....... 20 0 1 3.00 3 0 1 1 0 1 0
...........CTACAAACGCGCCACAAAGC....................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................GGTGCAGGAGCGAGCCGACATC.... 22 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................................ACTGGTGCAGGAGCGAGCGG......... 20 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................ACTGGTGCAGGAGCGAGCCGACATC.... 25 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................GGTGCAGGAGCTAGCCGACATCGAGA 26 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................AACTGGTGCAGGAGCGAGCCGACAT..... 25 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................GACCTACAGCAACTGGTGCAGGAGCGA............. 27 0 1 1.00 1 0 0 0 0 1 0
.............................................................................................................................................................................................................................................TCCGTCGAAACCCAAACCCAA.................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................................................AATGACCTACAGCAACTGGTGC..................... 22 0 1 1.00 1 0 1 0 0 0 0
..GCCCGGAAACTACAAACGCGCCACAA.......................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................CTGCAATGACCTACAGCAACTGGTG...................... 25 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................................ACTGGTGCAGGAGCGAGCCG......... 20 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................GTGCAGGAGCGAGCCGACATCGAG. 24 0 1 1.00 1 1 0 0 0 0 0
...........CTACAAACGCGCCACAAAGCGAATC.................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0
..................CGCGCCACAAAGCGAATCGAAG.............................................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................GACCAGACAAAAGAAAAAA.............................................................................................................................................................................................................. 19 1 1 1.00 1 0 1 0 0 0 0
.............................GCGAATCGAAGATGGCTACA..................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................GGTGCAGGAGCGAGCCGG........ 18 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................................AGCAACTGGTGCAGGAGCGAGC........... 22 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................TGGTGCAGGAGCGAGCCGACATC.... 23 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................................ACTGGTGCAGGAGCGAGCC.......... 19 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................CTGGTGCAGGAGCGAGCCGAC....... 21 0 1 1.00 1 0 0 0 0 0 1
....................................................................................................................................................................................................................................................AAACCCCTACCCAAAAACCAAACC.......................................................................................... 24 3 3 0.33 1 0 1 0 0 0 0
..GCCCGGAAACTACCAACTCC................................................................................................................................................................................................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................................................................GCAGGAGCAAGCCGACTTC.... 19 2 6 0.17 1 0 0 1 0 0 0
...............................................................AAAAAAAAAAACCCGGAC..................................................................................................................................................................................................................................................................................... 18 1 7 0.14 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................................GAAAACCAAACCCAACACCCCA............................................................................................. 22 3 9 0.11 1 0 0 0 0 0 1
...................................................................................................................................CTGACAAGACAGAAAAAAAAAGA............................................................................................................................................................................................................ 23 3 9 0.11 1 1 0 0 0 0 0
.......GAAACTACAAAGGAGCCACCA.......................................................................................................................................................................................................................................................................................................................................... 21 3 9 0.11 1 0 1 0 0 0 0
................................................................AAAAAAAAACACCGGACCAA.................................................................................................................................................................................................................................................................................. 20 2 10 0.10 1 0 1 0 0 0 0
...........................................................................................................................ACGCGCATCTGATCAGACA........................................................................................................................................................................................................................ 19 3 10 0.10 1 0 0 0 1 0 0
...............................................................................................................................................................................................................................................CGACGACACCCAAACCAAAAA.................................................................................................. 21 3 10 0.10 1 0 1 0 0 0 0
..................................................................................................................................................AAAAAATAAAACTCAAAGA................................................................................................................................................................................................. 19 1 12 0.08 1 0 0 0 0 0 1
...................................................................................................................................................................................................................................................GAAACCCAAGCCCCAAACCC............................................................................................... 20 2 12 0.08 1 0 1 0 0 0 0
.................................................................AAAAAAAACACCGGACCAA.................................................................................................................................................................................................................................................................................. 19 2 13 0.08 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................................GAAACCCAGACCCCAAACC................................................................................................ 19 2 13 0.08 1 0 1 0 0 0 0
.............................................................................................................................................AAAAAAAAAAATTAAACTCAATAA................................................................................................................................................................................................. 24 2 17 0.06 1 0 0 0 0 0 1
..............................................................AAAAAAAAAAAAACCGGAC..................................................................................................................................................................................................................................................................................... 19 1 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................AAAAAAAAAAATAAACCTC...................................................................................................................................................................................................... 19 1 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................ACTGGCGGAGGAGCGAGC........... 18 2 20 0.05 1 0 0 0 1 0 0
..................................................................................................................................................................................................................................................CGAACACCAAACCCAAAAC................................................................................................. 19 2 20 0.05 1 0 1 0 0 0 0
...................................................................AAAAAAAACAGGACGAAACCCA............................................................................................................................................................................................................................................................................. 22 3 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................................TTATAGTTTTTTTGATGG............................................................................................................................................................................ 18 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CTCGGGCCTTTGATGTTTGCGCGGTGTTTCGCTTAGCTTCTACCGATGTTCATTCAAAAGAAATTTTTTTTTTTTGGCCTGATTTGCGTCTCTCTTTTCGATTCGAGTCTTGAGGTGAAAGATAGTGCGTAGACTGGTCTGTTTTTTTTTTTATTTTGAGTTACTTAAAATATCAAAAAAAATATCAAAAAGAGAGAGACATATTTGTGAACAGGGCGACCCAGTAACGGTCGACTTAGGCAGCTTTGGGTTTGGGTTTTGGGTTTGGCCAAACGTAATAATACTAAAAACAGAGTAAGGCATGCGTCTGAGACGTTACTGGATGTCGTTGACCACGTCCTCGCTCGGCTGTAGCTCT
**************************************************....(((((.(((....))).)))))((((....(((.((((((((((((((...(((((....................)))))......((((((((..((((((.((...)).))))))..)))))))).)))))))))))))).)))...........((..(((((.......))))).)).............((((((.............)))))).......((((........)))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 M044
female body
 V106
head
 V039
embryo
 V105
male body
.................................................................................................................................................................................................................................................................................................................................................TCCTTTCTCGGCTGTAGCTGT 21 3 2 0.50 1 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................CTACTCTCTCGGCTGTAGCTC. 21 3 4 0.25 1 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................................................................CCTGCTCGGCTGTAGCTC. 18 2 5 0.20 1 1 0 0 0 0
............................TCGATTAGTTTCTACCGA........................................................................................................................................................................................................................................................................................................................ 18 2 9 0.11 1 0 0 1 0 0
.........................................................................................................................................................................................................................................................GTTTGGGTGCTGGGGTTGG.......................................................................................... 19 3 20 0.10 2 0 2 0 0 0
...................................................................................................GAGTCGAGTCTTGAGCTG................................................................................................................................................................................................................................................. 18 2 11 0.09 1 1 0 0 0 0
.................................................................................................................................................................................................................................................AGCTTTGGGTTTGGGTTGA.................................................................................................. 19 2 14 0.07 1 0 0 0 1 0
.............................................................................................................................TCCGTAGACTCGTCTGTTG...................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1
..................................................................................................................................................................................................................................................................................................................................................CCTTCCTCGGCTGTAGCTT. 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:7926191-7926548 + dan_2964 GAGCCCGGAAACTACAAACGCGCCACAAAGCGAATCGAAGATGGCTACAAGTAAGTTTTCTTTAAAAAAAAAAAACCGGACT---AAACGCA--------------GAGAGAAAAGCTAAGCTCAGAACTCC-ACTTTCTATCACGCATC-------TGACCAGACAAAAAAAAAAATAAAACTCAATGAATTTTATAGTTTTTTTTATAGTTTTTCTCTCTCTGTAT------AAACACTTGTC-CCGCTGGGTCATTGCCAGC-------------TGAATCCGTCGAAACCCAAA-CCCA-------------------------------AAA--C-----------CCAAACCGGTT------------------------------TGCATTATTATGATTTT-------TGTC---------------------------------------TCATTCCG---------------------------------------T---ACGCAGACTCTGCAATGACCTACAGCAACTGGTGCAGGAGCGAGCCGACATCGAGA
droBip1 scf7180000396708:920973-921327 - GAGCCCGGAAACTATAAACGCGCCACAAAGCGAATCGAAGATGGATACAAGTGAGTTCCCATTAAAA-------------CTATAAAACCCA--------------GAGAGAAAATCTAAAATCAGAACTAAAACTTTCTATCATGAATCTCATAAATGACCA--------------------------------------TTTTGTTTAGTTTTTCTCTCTGTGTACTCTCTCTAACACTTGTC-CCGCTGGGTCATTGCCAGC-------------TGAATCCGTCGAAACCCATA-CCCATACTCATACCCATACCCATATCCGAACCAAAAAA--C-----------CCAAACCGGTT------------------------------TACATTATTTTGATTTT-------TGTC---------------------------------------TCATTCCG---------------------------------------T---ACGCAGACTCTGCAATGACCTACAGCAACTGGTGCAGGAGCGGGCCGACATCGAGA
droKik1 scf7180000302307:90319-90496 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTCTGTGCAT------AAGCACTTGGT-CCCCTGGGTCATTGCCAGCGACAGCAGCAGGCAGAGTCACTCGGAAAGC---------------------------------------AAA--G-----------CCAAACCGGTT------------------------------CGCATTATTTTGATTTC-------TGTC-TC------------------------------------TCGTCTCG---------------------------------------C---ACGCAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGAGCCGACATCGAGA
droFic1 scf7180000453930:117087-117267 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCTCTGTGTAT------AAGCACTTGGC-TCGCTGGGTCATTGCCAGC-------------AGAATCCATTCGAACCCGAA-CCCAACCCCAAACCC--------------------AAA--T-----------CCAAACCGGTT------------------------------TGCATTATTTTGATTTT-------TGTC---------------------------------------TCATTTCA---------------------------------------C---ACGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGAAATCGAGA
droEle1 scf7180000491080:540896-541076 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTCTGTGTGT------AAGCACTTGGC-CCTCTGGGTCATTGCCAGC-------------AGAATCCATCGAAACCCGAA-TCCAAACCCAAATAC--------------------AAG--C-----------CCAAACCGGTT------------------------------TGCATTATTATGATTTT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---ACGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGACATCGAGA
droRho1 scf7180000779659:242446-242620 + TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTCTGTGCAT------AAGCACTTGGC-CCGCTGGGTCATTGCCAGC-------------AGAATCCATCTGAACCCGAA-CCCAAATAC--------------------------AAA--C-----------TCAAACCGGTT------------------------------TGCATTATTATGATT-T-------TGTC---------------------------------------TCATTTCG---------------------------------------C---ACGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGACATCGAGA
droBia1 scf7180000302402:9500922-9501097 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTCTGTGCAC------CAAGACTTGGA-CCTCTGGGTCATTGCCAGC-------------TGAATCCATCGGAACGCGAA-CCCAGGCCCAA-------------------------AT--C-----------CAAAACCGGTT------------------------------TGCATTATTGTGATTTT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGTGCCGAAATCGAGA
droTak1 scf7180000415245:48348-48529 - TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAGT--TTTTCTCTGTGCAC------GAGCACCTGGA-CCGCTGGGTCATTGCCAGC-------------TGAATCCATCGGAACTCGAA-CCCAAACCCA--------------------------AA--A-----------CCAAACCGGTT------------------------------TGCATTATTATGATTTT-------TGTC---------------------------------------TCATTTCA---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGTGCCGAAATCGAGA
droEug1 scf7180000409542:519705-519884 - A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTT-TTTTTACTGTGTAT------TACCACTTGGC-CTGCTGGGTCATTGCCAGC-------------TCAATCCATCGCAACCCGAA-CCCAAACCA--------------------------ATA--A-----------TCAAACCGGTT------------------------------TGCATTATTATGATTTT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGTGCCGACATGGAGA
dm3 chr3R:16661464-16661646 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTGTGTAT------TTGCACTGGGCGACGCTGGGTCATTGCCAGC-------------CGAATATATCGACACCCGAAGCCCAAACCCAAGACA-------------------AAAA--T-----------TCAAACCGGTT------------------------------TGCATTATTATGATTCT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGACATCGAGA
droSim2 3r:4643952-4644133 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTGTGTAT------TTGCACTGGGCGACGCTGGGTCATTGCCAGC-------------CGAATATATCGGCACCCGAA-CCCAAACCCAAGCCA-------------------AAAA--T-----------CCAAACCGGTT------------------------------TGCATTATTATGATTCT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGACATCGAGA
droSec2 scaffold_27:73574-73767 - TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAAGG--TTCTCTCTGTGTAT------TTGCACTGGGCGACGCTGGGTCATTGCCAGC-------------CGAATATATCGGCACCCGAACCCCAAACCCAAGCCC-------------------AAAT--T-----------TCAAACCGGTT------------------------------TGCATTATTATGATTCT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGACATTGAGA
droYak3 3R:5458283-5458466 + AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGT--TTCTCCATGTGTAT------T-GCACTGGGCGACGCTGGGTCATTGCCAGC-------------CGAGTATATCGGCACCCGAA-CCAAAACCCAAGCCC-------------------AAAA--G-----------CCAAACCGGTT------------------------------TGCATTATTATGATTCT-------TGTC---------------------------------------TCATTC----------------------------------------------CGCAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGTGCCGACATAGAGA
droEre2 scaffold_4770:4994786-4994967 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCTCTGTGTAT------T-GCACTGGGCGACGCTGGGTCATTGCCAGC-------------CGAGTATAAAGTCAACCGAA-CCAAAACCCAAACCC-------------------AAAA--G-----------CCAAACCGGTT------------------------------CGCATTGTTATGATTCT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGTGCCGACATCGAGA
dp5 2:12782350-12782442 - TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTATTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------ATTTC-------TGTTCTCTTT---------------------------------CCCTCTCT---------------------------------------T---GCGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGAGCCGACATCGAAA
droPer2 scaffold_0:7676346-7676438 + TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTATTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------ATTTC-------TGTTCTCTTT---------------------------------CCCTCTCT---------------------------------------T---GCGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGAGCCGACATCGAAA
droWil2 scf2_1100000004921:2201739-2201814 - TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTT-------TGTT---------------------------------------T------T---------------------------------------C---TGACAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGAGCTGATATTGAGA
droVir3 scaffold_13047:12048669-12048725 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACAGACTCTGCAACGACCTACAGCAACTGATACAGGAGCGCGCCGATATTGAGA
droMoj3 scaffold_6540:29731437-29731677 + GAGCCCGGCAATTACAAACGAACCACCAAACGCATCGAAGACAGCTACAAGTGAGT----------------------------ATG----AAAATACAAATCGTAGA--------------------------------------------------------------------------------------------------------------CACTG-------------------------TTAGGGTCATTGCCAGC-------------AATAACAAACTGG-------------------------------------------------------------AAAACCAGTTATT---------------------------TGT---------ATTGT-------CGCTCTCGCTCACTCTCTCTGTGTGTCTTTCCTTCTCGCTTTCTCATCT-G---------------------------------CC----C---GCACAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGTGCCGATATTGAGA
droGri2 scaffold_14830:1163437-1163763 + GAGCCTGGCAATTATAAACGAACCACCAAACGCATCGAAGATAGCTACAAGTGAGT----------------------------AAAACACAAAATACAAATCGCAAATCAAAACACAA---------------------------------------------------------------------------------------------------CACT---------------GGCTTGGC-TGCTTGGGTCATTGCCAGC-------------AATAACAA------------------AAACAA-----------------------AAAAAAGTGTACAACTTAAATAACCGGTTATTTACTTGTCTCTTTTCTTTTCTTTATTTTGT---------ATTCTCGCTCTCTCTTCTCTGC---------------------------------CCCTCTCTCTATTTATATTTGATGGCTCATCCACACATCTGTCGGTGCTCGGCACAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGCGCCGATATTGAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GAGCCCGGAAACTACAAACGCGCCACAAAGCGAATCGAAGATGGCTACAAGTAAGTTTTCTTTAAAAAAAAAAAACCGGACT---AAACGCA--------------GAGAGAAAAGCTAAGCTCAGAACTCC-ACTTTCTATCACGCATC-------TGACCAGACAAAAAAAAAAATAAAACTCAATGAATTTTATAGTTTTTTTTATAGTTTTTCTCTCTCTGTAT------AAACACTTGTC-CCGCTGGGTCATTGCCAGC-------------TGAATCCGTCGAAACCCAAA-CCCA-------------------------------AAA--C-----------CCAAACCGGTT------------------------------TGCATTATTATGATTTT-------TGTC---------------------------------------TCATTCCG---------------------------------------T---ACGCAGACTCTGCAATGACCTACAGCAACTGGTGCAGGAGCGAGCCGACATCGAGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCAGGAGCGAGCCGAC.......2013.003110010
...........CTACAAACGCGCCACAAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCAGGAGCGAGCCGACATC....2211.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTGCAGGAGCGAGCCGACATC....2511.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGTGCAGGAGCGAGCCGACAT.....2511.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTACAGCAACTGGTGCAGGAGCGA.............2711.001000010
..........................................................................................................................................................................................................................................................................................TCCGTCGAAACCCAAA-CCCA-------------------------------A.......................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACCTACAGCAACTGGTGC.....................2211.001010000
..GCCCGGAAACTACAAACGCGCCACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGACCTACAGCAACTGGTG......................2511.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTGCAGGAGCGAGCCG.........2011.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGGAGCGAGCCGACATCGAG.2411.001000001
...........CTACAAACGCGCCACAAAGCGAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100
..................CGCGCCACAAAGCGAATCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.............................GCGAATCGAAGATGGCTACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCAGGAGCGAGCCGG........1811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACTGGTGCAGGAGCGAGC...........2211.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCAGGAGCGAGCCGACATC....2311.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTGCAGGAGCGAGCC..........1911.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGCAGGAGCGAGCCGAC.......2111.001001000
droBip1
GAGCCCGGAAACTATAAACGCGCCACAAAGCGAATCGAAGATGGATACAAGTGAGTTCCCATTAAAA-------------CTATAAAACCCA--------------GAGAGAAAATCTAAAATCAGAACTAAAACTTTCTATCATGAATCTCATAAATGACCA--------------------------------------TTTTGTTTAGTTTTTCTCTCTGTGTACTCTCTCTAACACTTGTC-CCGCTGGGTCATTGCCAGC-------------TGAATCCGTCGAAACCCATA-CCCATACTCATACCCATACCCATATCCGAACCAAAAAA--C-----------CCAAACCGGTT------------------------------TACATTATTTTGATTTT-------TGTC---------------------------------------TCATTCCG---------------------------------------T---ACGCAGACTCTGCAATGACCTACAGCAACTGGTGCAGGAGCGGGCCGACATCGAGASizeHit CountTotal NormTotal
No Reads
droKik1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTCTGTGCAT------AAGCACTTGGT-CCCCTGGGTCATTGCCAGCGACAGCAGCAGGCAGAGTCACTCGGAAAGC---------------------------------------AAA--G-----------CCAAACCGGTT------------------------------CGCATTATTTTGATTTC-------TGTC-TC------------------------------------TCGTCTCG---------------------------------------C---ACGCAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGAGCCGACATCGAGASizeHit CountTotal NormTotal
No Reads
droFic1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCTCTGTGTAT------AAGCACTTGGC-TCGCTGGGTCATTGCCAGC-------------AGAATCCATTCGAACCCGAA-CCCAACCCCAAACCC--------------------AAA--T-----------CCAAACCGGTT------------------------------TGCATTATTTTGATTTT-------TGTC---------------------------------------TCATTTCA---------------------------------------C---ACGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGAAATCGAGASizeHit CountTotal NormTotal
No Reads
droEle1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTCTGTGTGT------AAGCACTTGGC-CCTCTGGGTCATTGCCAGC-------------AGAATCCATCGAAACCCGAA-TCCAAACCCAAATAC--------------------AAG--C-----------CCAAACCGGTT------------------------------TGCATTATTATGATTTT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---ACGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGACATCGAGASizeHit CountTotal NormTotal
No Reads
droRho1
TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTCTGTGCAT------AAGCACTTGGC-CCGCTGGGTCATTGCCAGC-------------AGAATCCATCTGAACCCGAA-CCCAAATAC--------------------------AAA--C-----------TCAAACCGGTT------------------------------TGCATTATTATGATT-T-------TGTC---------------------------------------TCATTTCG---------------------------------------C---ACGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGACATCGAGASizeHit CountTotal NormTotal
No Reads
droBia1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTCTGTGCAC------CAAGACTTGGA-CCTCTGGGTCATTGCCAGC-------------TGAATCCATCGGAACGCGAA-CCCAGGCCCAA-------------------------AT--C-----------CAAAACCGGTT------------------------------TGCATTATTGTGATTTT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGTGCCGAAATCGAGASizeHit CountTotal NormTotal
No Reads
droTak1
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAGT--TTTTCTCTGTGCAC------GAGCACCTGGA-CCGCTGGGTCATTGCCAGC-------------TGAATCCATCGGAACTCGAA-CCCAAACCCA--------------------------AA--A-----------CCAAACCGGTT------------------------------TGCATTATTATGATTTT-------TGTC---------------------------------------TCATTTCA---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGTGCCGAAATCGAGASizeHit CountTotal NormTotal
No Reads
droEug1
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTT-TTTTTACTGTGTAT------TACCACTTGGC-CTGCTGGGTCATTGCCAGC-------------TCAATCCATCGCAACCCGAA-CCCAAACCA--------------------------ATA--A-----------TCAAACCGGTT------------------------------TGCATTATTATGATTTT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGTGCCGACATGGAGASizeHit CountTotal NormTotal
No Reads
dm3
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTGTGTAT------TTGCACTGGGCGACGCTGGGTCATTGCCAGC-------------CGAATATATCGACACCCGAAGCCCAAACCCAAGACA-------------------AAAA--T-----------TCAAACCGGTT------------------------------TGCATTATTATGATTCT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGACATCGAGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACTGATTCAGGAGCGTGC...........2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATTCAGGAGCGTGC...........1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGCAACTGATTCAGGAGCGTGC...........2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGATTCAGGAGCGTGCCG.........2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..............................................................................................................................................................................................................................................................................................................AAACCCAAGACA-------------------AAAA--T-----------TC.....................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTCAGGAGCGTGCCGAC.......2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGCAACTGATTCAGGAGCGTGCCG.........2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AACCCAAGACA-------------------AAAA--T-----------TCA....................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATTCAGGAGCGTGCCGAC.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAGGAGCGTGCCGAC.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAGGAGCGTGCCGACATC....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................................................................................................................................................................................................................GTAT------TTGCACTGGGCGACGCTT..........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACTGATTCAGGA.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGATTCAGGAGCGT.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CCCAAGACA-------------------AAAA--T-----------TCAAACCGGTT------------------------------..............................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTACAGCAACTGATTCAGGAGCGTGCC..........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---------------------------------------C---CCGCAGACTCTGCAAT........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATTCAGGAGCGTGC...........1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTGCAATGACCTACAGCAACTGA........................2611.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATTCAGGAGCGTGCCGACA......2411.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCAACTGATTCAGGAGCGTGCC..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAGGAGCGTGCCGACATCGAGA2611.0010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCGTGCCGACATCG...1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATTCAGGAGCGTGCCGA........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGCAACTGATTCAGGAGC...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTACAGCAACTGATTCAGGAGCGTG............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTCAGGAGCGTGCCG.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CGACACCCGAAGCCCAAACCCAAGAC.............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACTGATTCAGGAGCGTGCC..........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................................................................................................T------TTGCACTGGGCGACGCTGGGTCATTGC.................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTCT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCG.....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACTGATTCAGGAGCGTGC...........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGATTCAGGAGCGTGCC..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AAACCCAAGACA-------------------AAAA--T-----------TCA....................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTGTGTAT------TTGCACTGGGCGACGCTGGGTCATTGCCAGC-------------CGAATATATCGGCACCCGAA-CCCAAACCCAAGCCA-------------------AAAA--T-----------CCAAACCGGTT------------------------------TGCATTATTATGATTCT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGACATCGAGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................CTGGGTCATTGCCAGC-------------T...............................................................................................................................................................................................................................................................................................1711.00100000000010000000
droSec2
TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAAGG--TTCTCTCTGTGTAT------TTGCACTGGGCGACGCTGGGTCATTGCCAGC-------------CGAATATATCGGCACCCGAACCCCAAACCCAAGCCC-------------------AAAT--T-----------TCAAACCGGTT------------------------------TGCATTATTATGATTCT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGACATTGAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATTCAGGAGCGTGCCGAC.......2312.0021010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAGGAGCGTGCCGACA......2011.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATTCAGGAGCGTGCC..........1911.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................T-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCGCAG..................................................2011.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTCAGGAGCGTGCCGACATTGAGA2711.0011000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATTCAGGAGCGTGCCGACATT....2511.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAGGAGCGTGCCGACAT.....2111.0010100
droYak3
AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGT--TTCTCCATGTGTAT------T-GCACTGGGCGACGCTGGGTCATTGCCAGC-------------CGAGTATATCGGCACCCGAA-CCAAAACCCAAGCCC-------------------AAAA--G-----------CCAAACCGGTT------------------------------TGCATTATTATGATTCT-------TGTC---------------------------------------TCATTC----------------------------------------------CGCAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGTGCCGACATAGAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................GCATTATTATGATTCT-------TGTC---------------------------------------TCATTC----------------------------------------------.......................................................2611.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACTGATACAGGAGC...............2011.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCAACTGATACAGGAGC...............2111.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGGAGCGTGCCGAC.......1911.00100000010000
droEre2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCTCTGTGTAT------T-GCACTGGGCGACGCTGGGTCATTGCCAGC-------------CGAGTATAAAGTCAACCGAA-CCAAAACCCAAACCC-------------------AAAA--G-----------CCAAACCGGTT------------------------------CGCATTGTTATGATTCT-------TGTC---------------------------------------TCATTTCG---------------------------------------C---CCGCAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGTGCCGACATCGAGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGATACAGGAGCGTGC...........2111.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGATACAGGAGCGTGCCGACAT.....2611.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACTGATACAGGAGC...............1811.0010000010
dp5
TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTATTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------ATTTC-------TGTTCTCTTT---------------------------------CCCTCTCT---------------------------------------T---GCGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGAGCCGACATCGAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTCAGGAGCGAGCCG.........1811.0010000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------TGTTCTCTTT---------------------------------CCCTCTCT---------------------------------------T---GCGCAG..................................................2811.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACTGATTCAGGAGC...............2011.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAGGAGCGAGCCGACAT.....2111.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGCAACTGATTCAGGAGC...............2211.0010100000000
droPer2
TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTATTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------ATTTC-------TGTTCTCTTT---------------------------------CCCTCTCT---------------------------------------T---GCGCAGACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGAGCCGACATCGAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTGCAATGACCTACAGC..............................2011.001010000
droWil2
TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTT-------TGTT---------------------------------------T------T---------------------------------------C---TGACAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGAGCTGATATTGAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGGAGCGAGCTGAT.......1912.00200101
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACTGATACAGGAGC...............1811.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATACAGGAGCGAGCTGAT.......2311.00100100
droVir3
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACAGACTCTGCAACGACCTACAGCAACTGATACAGGAGCGCGCCGATATTGAGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGCAACTGATACAGGAGCGC.............2413.003000000000000000000000000000000000000000000000000000000000000030
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGACCTACAGCAACT..........................1911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTACAGCAACTGATACAGGAGC...............2411.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGGAGCGCGCCGATATTGAG.2411.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATACAGGAGCGCGCCGAT.......2311.001000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGGAGCGCGCCGATAT.....2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATACAGGAGCGCGCC..........2011.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGCAACTGATACAGGAGCG..............2311.001000000000000100000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTACAGCAACTGATACAGGAGCGC.............2711.001000000000001000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTACAGCAACTGATACAGGAGCGC.............2511.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GAGCCCGGCAATTACAAACGAACCACCAAACGCATCGAAGACAGCTACAAGTGAGT----------------------------ATG----AAAATACAAATCGTAGA--------------------------------------------------------------------------------------------------------------CACTG-------------------------TTAGGGTCATTGCCAGC-------------AATAACAAACTGG-------------------------------------------------------------AAAACCAGTTATT---------------------------TGT---------ATTGT-------CGCTCTCGCTCACTCTCTCTGTGTGTCTTTCCTTCTCGCTTTCTCATCT-G---------------------------------CC----C---GCACAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGTGCCGATATTGAGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................GAACCACCAAACGCATCGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGGAGCGTGCCGATATT....2211.001100000
...............AAACGAACCACCAAACGCATCGAAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACCTACAGCAACTGATACAGGA.................2611.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACTGATACAGGAGCGTGCCGATAT.....2811.001000001
droGri2
GAGCCTGGCAATTATAAACGAACCACCAAACGCATCGAAGATAGCTACAAGTGAGT----------------------------AAAACACAAAATACAAATCGCAAATCAAAACACAA---------------------------------------------------------------------------------------------------CACT---------------GGCTTGGC-TGCTTGGGTCATTGCCAGC-------------AATAACAA------------------AAACAA-----------------------AAAAAAGTGTACAACTTAAATAACCGGTTATTTACTTGTCTCTTTTCTTTTCTTTATTTTGT---------ATTCTCGCTCTCTCTTCTCTGC---------------------------------CCCTCTCTCTATTTATATTTGATGGCTCATCCACACATCTGTCGGTGCTCGGCACAGACTCTGCAATGACCTACAGCAACTGATACAGGAGCGCGCCGATATTGAGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:57 AM