ID:

dan_2922

 Coordinate:

scaffold_13340:6328837-6328987 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dana_GLEANR_19110:2]; CDS [Dana\GF17848-cds]; intron [Dana\GF17848-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTTGAAGTCGCAAAGCTAAAGCTGCCGATGCCTGCGTGTCTATATCTTTATCGTCTAATTTGTGTATATGCGGGGGTGGCTGATAGAATCATGTCTCAGAACTAGAGCTCAGAAATTGATTTTCCAATCAAGGGACAAGGGTCATCTATTAAATATTAAATTAATTTTAAACTAAATATTATTTTATTCTTTTCTTACAGCTCACGGAAACGTCCGCCCAGCGATCACCAGGACTACGGTCCCAGCAAGG
**************************************************......(((((((.((((......((((((((..........((((((..................((((((....))))))))))))..)))))))).....))))))))))).....................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M044
female body
 M058
embryo
 V106
head
 V055
head
 V039
embryo
.................................................GATCGTCGAATTTGGGTATA...................................................................................................................................................................................... 20 3 15 4.00 60 36 16 1 3 4 0
..................................................ATCGTCGAATTTGGGTATA...................................................................................................................................................................................... 19 2 10 2.60 26 16 7 0 1 1 1
.................................................GATCGTCGAATTTGGGTAT....................................................................................................................................................................................... 19 3 20 1.05 21 14 5 0 2 0 0
..................................................ATCGTCGAATTTGTGTATAGGGG.................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
....................................................CGTCTAATTTGGGTATAGGGG.................................................................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0
...................................................TCGTCGAATTTGTGTATA...................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................CTCACGGAAACGTCCGCCCAGC............................ 22 0 1 1.00 1 0 0 1 0 0 0
..................................................ATCGTCGAATTTGGGTATATGG................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................ATCGTCTAATTTGTGTATAGGG................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................CGTCCGCCCAGCGATCACCAGGACTACA............ 28 1 1 1.00 1 0 1 0 0 0 0
..................................................ATCGTCGAATTTGGGTATAT..................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0
........................................................................................ATCATGGCTCAGAACGAGA................................................................................................................................................ 19 2 1 1.00 1 0 0 1 0 0 0
..................................................ATCGTCGAATTTGGGTATAG..................................................................................................................................................................................... 20 3 15 0.67 10 8 2 0 0 0 0
..................................................ATCGTCGAATTTGGGTATAGGCG.................................................................................................................................................................................. 23 3 2 0.50 1 0 0 0 0 1 0
....................................................CGTCGAATTTGTGTATAGGGG.................................................................................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0
..................................................ATCGTCGAATTTGGGTAT....................................................................................................................................................................................... 18 2 20 0.50 10 1 7 0 0 2 0
...................................................TCGTCGAATTTGGGTATA...................................................................................................................................................................................... 18 2 13 0.46 6 1 2 0 0 3 0
....................................................CGTCGAATTTGGGTATATGGG.................................................................................................................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0
.....................................................GTCGAATTTGGGTATATGGG.................................................................................................................................................................................. 20 3 8 0.25 2 2 0 0 0 0 0
....................................................CGTCTAATTTGGGTATAGGG................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 1 0 0
.....................................................GTCTAATTTGGGTATAGGG................................................................................................................................................................................... 19 3 20 0.20 4 3 1 0 0 0 0
.....................................................GTCGAATTTGGGTATATGG................................................................................................................................................................................... 19 3 20 0.15 3 2 1 0 0 0 0
.....................................................GTCTAATTTGGGTATAGGGG.................................................................................................................................................................................. 20 3 7 0.14 1 1 0 0 0 0 0
...................................................TCGTCGAATTTGGGTATAG..................................................................................................................................................................................... 19 3 20 0.10 2 0 2 0 0 0 0
....................................................................................................................TTAATTTTCCACGCAAGGGA................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 1
....................................................CGTCGAATTTGGGTATAGG.................................................................................................................................................................................... 19 3 20 0.10 2 0 2 0 0 0 0
...........................................................TTTGGGTATATGCGCGG............................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 1 0
...................................................................................................................................................................................................TTACAGCACACGGAATCGC..................................... 19 3 18 0.06 1 0 1 0 0 0 0
....................................................CGTCGAATTTGGGTATATGG................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................................ATATTATGTTATTCGTTT......................................................... 18 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GAAACTTCAGCGTTTCGATTTCGACGGCTACGGACGCACAGATATAGAAATAGCAGATTAAACACATATACGCCCCCACCGACTATCTTAGTACAGAGTCTTGATCTCGAGTCTTTAACTAAAAGGTTAGTTCCCTGTTCCCAGTAGATAATTTATAATTTAATTAAAATTTGATTTATAATAAAATAAGAAAAGAATGTCGAGTGCCTTTGCAGGCGGGTCGCTAGTGGTCCTGATGCCAGGGTCGTTCC
**************************************************......(((((((.((((......((((((((..........((((((..................((((((....))))))))))))..)))))))).....))))))))))).....................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 V105
male body		 V055
head
.......................................................................................................................CAAAGGGTTAGTTCCCTG.................................................................................................................. 18 2 6 0.33 2 1 1 0
......................................................................................................GTTCTCGAGTCTTCAACTAT................................................................................................................................. 20 3 7 0.14 1 0 0 1
.............................................................................................................................................................................................GAAAAAAATGTCGTGTGC............................................ 18 2 15 0.07 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:6328787-6329037 + dan_2922 CT--TTGAA----------------------GTCGCAAAGCTA-AAG----------------------------------CTG-CCGA--TGCCTGCGTGTC----TATATCTTTATCG-TCTAATT-TG-----------------------------------------------------TGTATAT--------GCGGGGGTGGCTGATAGAATCATGTCTCA-GAACTAGA-----GCTCA------GAAA-TTGATTT-----TCCAATCAAGGG---ACA---------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------GGGTCATCTATTAAATA---------------------TTA------AATTAATTTTAA-ACTAAATAT--------------TATTTTAT---T-----C--TT----TTC---------TTACAGCTCACGGAAACGTCCGCCCAGCGATCACCAGGACTACGG------TCCCAGCAAGG---------
droBip1 scf7180000396708:2515343-2515562 - CT--TTGAA----------------------GTCGAAAAGCTA-AAG----------------------------------CTG-TCGATATGCCTGCGTGTC----TATATCTTTATCG-TTT-------------------A----------------------------------------------T--------GCGGGGGTGGCTGATAACATCATGTCTTA-GAACTGGGACAC---ACA-------AAA-TTGATTT-----TCCAAAAAA--GG-GATA---------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------AGGTCA------------------------------------------------------------TTC--------------TCTAAAATGTTTTCAATTC-TT----TCA---------TTGCAGCTCACGGAAACGTCCGCCCAGCGATCACCAGGACTACGG------TCCCAGCAAGG---------
droKik1 scf7180000302706:2003245-2003608 + CT--TTGAT----------------------GTC--TAAGCCA-TAG----------------------------------CTG-CCGA--TGCCTGCGTGTC----TATATCTTTATCG-TTCACA-----------------T----ATATATAAATATGCTATAGTATGGAGATGTTTTGTGCACTTT--------GTGGGGGCGACCGATAAAATCAAGAATCA-GAACTGGGTCAA--------AGCTGCAA-CTGATTT-----GTCATTGAAGTGA-GGTG--GAAA-----------TTGGGTCGGAATTTCTGAAGTGAGATCACAGAAAAC-----------------------------------------------------------------G-GG-------------TCCTTTC------------------------------------------TATTTTTATTAATGTATTTTTTACGAATAGTAA------A------TAGTCTGTATAAACTCAA------------------------------------------------------------T-ACTAAATA---------------TATGATTT---TCCC-----TT----ACT---------TTCCAGCTCACGGAAACGTCCGCCCAGCGATCATCATGACTATGGCAGCGATCCGAGCAAGG---------
droFic1 scf7180000454104:1071959-1072371 - CT--TTGAT----------------------GTCG-AAAGCTA-AAG----------------------------------CTG-CCGA--TGACTGCGTGTC----TATATCTTTATCG-GCCAGTT-TCTAGTTG--CTGTACTCGTATGTAG--------------------ATC------GCAGCCT--------GTGGGGGCGACTGATAAAATCAAGAATCA-AAACTGGGTCAATGCTCA-GAGCTGGAA-TTGATTT-----GCCACTGAAATGG-AAGGAGGTTTTTAAATCTATGTTGCG------------------------TAAAAATTTGTTATACTTCAATTTA----------------------------CTTCAATTTATATTATTA-G-AGAAATTATTATACAT----TTTGAGCTTACTAGTTTGAGTTTCTCCTTTTCCTTTATTTTAAT----------------------------TTTATAAGA-------------------------------------------ATT---------------------ATT------TCTTAT-TGATA-ACTAACCTT--------------TCT----T---TTCC-----TCTCT-TTT---------TTCCAGTCCTCGGAAACGTCCGCCCAGCGATCACCAGGACTACAGCAGCGATCCCAACAAGG---------
droEle1 scf7180000490967:969528-969699 - CT--TTGAT----------------------GTC--TAAGCTA-AGG----------------------------------CTG-CCGA--TGCCTGCGTGTC----TATATCTCTATCG-GCCAGTTTTTCAGTTT--CT--AT----ATGTAG--------------------ATG------AGTGCTT--------GTGTGGGTGGCTGATAAAATCAAGAATCA-GAACTGGGTCAATGCTTA-GAGTTGAAA-TTGATTT-----GCCACTGAAAAGA-GATG-----------------------------------------------------------------------GGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779916:61198-61353 - CT--TTGAT----------------------GTC--TAAGCTA-AGG----------------------------------CTG-CCGAT-TGCCTGCGTGTC----TATATCTTTATCG-GCCAGTTTTCTAGTTT--CT--AT----ATGTAG--------------------ATG------AGTGCTT--------GTGGGGGTGGCTGATAAAATCAAGAATCA-CAACTGGGTCAATGCTTT-GAGTTGCAA-TTGATTT-----GCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302402:3259775-3259958 + CT--TTGAT----------------------GTC--GA-GCCA-A--------------------------------------G-CCGC--TGCCTGCGTGTC----TATATCTTTATCG-GCCAGTT-TCTAGCTT--CT--GT----ATGTAG--------------------ATG------AGTGCTT--------GTGGGGGTGGCCGATAAAATCAAGAATCA-AAACTGGGTCAATGCTCA-G-GCCGGAA-TGGATTT-----GCCAATGAGAGGG-G----------------------------------------------------------GTTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA----------------------------------------------------------------------AGTACTTGTAA-GATAAA------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415245:353170-353560 - CT--TTGAT----------------------GTTGGTAAGCCAAAGG----------------------------------CTG-CCGTT-TGCCTGCGTGTC----TATATCTTTATCG-GCCAGTT-TCTAGTTT--CT--AT----ATGTAG--------------------ATG------AGCGCTT--------GTGGGGGTGGCTGATAAAATCAAGAATCA-AAACTGGGTCAATGCTCA-GAGCTGGAA-TTGATTT-----GTTAATGAAATAGGGAGG-GGTA----------------------------------------------------TG-CAATAGAAGTAGGTCAAGAA--G----ATTGTCATTTAACTTCAA--------ACTT-G-AGAGATTAAAATATTT----TTTAATCTA----------------------------------------------------------------AGATATCAATAATAA-----------------------------------AATAATATTTTATTA-------------AGATAA---TCTCTTTAT-ATTAAACTTAAATAATTTTTTAAACTTTTTT---CCCCCTC--TT----TTC---------TTTCAGTCCCCGGAAACGTCCGCCCAGCGATCTGCAGGACTACAGCAACTA------CGAGG---------
droEug1 scf7180000409470:89325-89662 + CT--TTGATGTGTGTGTCTGTCTCAGCTGAAGCT--ATAGCTA-AAG----------------------------------CTG-CCGA--TGCCTGCGTGTC----TATATCTTTATCG-GCCAGTT-TCTAGTCT--CT--AT----ATGTAG--------------------ATG------AATGCCT--------GTGGGGGTGGCTGATAAAATCAACAATCA-AATCTGGGTCAATGCTAAAAAGCTGGAA-TTGATTT-----GCCACTGAAATGT-GATA-----------------CTGG---------------------------CAAATCTGTTCTATAGGAAACTAGGCA-----------------------------GTCT-----TG---ATGC-------------TT---------------------------------------------------------------------------AACTC------------------------------------------------TA---------------------TTC-TACAA---AC----TTT-ACTAAACAA--------------ACTTTCTT---TCTT------------GTATCTTTCATTTTCAGTCCCCGGAAACGTCCGCCCAGCGATCAGCAGGACTACAGCAACTA---------TG---------
dm3 chr3R:5768926-5769249 + CT--TTGATGTG----------------------TCTAAGCAA-ATG----------------------------------CCG-CCAA--TGTCTGTGTGTG----TATATCTTTATCG-CCCAGTT-TCTAGCTTCTCT--AT----ATGTAG--------------------AT------------------------------GACTGATAAAATCAAGAATGATAATCTGGGTCAATGTTTG-AAGCGGGAA-TTGAGTT-----GTTT--------------------------------------------------------------AAAATGTGTTATATATAGAACTAGGCCAT---GAGTACAGCTCTGTTTCAA-TGCAACGA-----AG---A-GG-------------TGCTTTC--------------------------------------------------------------TTACAAATAATAT-------------------------------------------------------------------------A------TATTATTTATTT-ACTAAATCC--------------TCTGTTTT---TCCCATCTTATTTT-TTT---------TTGCAGTTCCCGGAAACGTCCGCCCAGCGATCACCAGGACTACGGCAACTATC------------------
droSim2 3r:15278917-15279226 - dsi_27570 CTGTTTGATGTG----------------------TCTAAGCAA-ATG----------------------------------CCG-CCAA--TGCCTGCATGTG----TATATCTTTATCG-CCCAGTT-TCTGGCTTCTCT--AT----ATGTAG--------------------AT------------------------------AACTGATAAAATCAAGAATCATAATCTGGGTCAATGTTCA-AAGCGGGATTTTGATTT-----ATCT--------------------------------------------------------------AAAATGTGTTATATATAAAACTAGGCCAT---GAGT----TTCTGTTTCAA-TGCAATGA-----AG---A-GT------------------------------------------------------------------------------------------AATAT----------------------------------------------AATA---------------------ATA------TATTATTTATTA-ACTAAACCA--------------TCTGTTTT---TCCCATCT--T---ATTT---------TTGCAGTCCCCGGAAACGTCCGCCCAGCGATCACCAGGACTACGGCAAAGA---------TG---------
droSec2 scaffold_0:16148123-16148437 - CTGTTTGATGTG----------------------TCTAAGCAA-ATG----------------------------------CCGGCCAA--TGCCTGCGTGTG----TATATCTTTATCGACCCAGTT-TCTAGCTTCTCT--AT----ATGTAG--------------------AT------------------------------AACTGATAAAATCAAGAACCATAATCTGGGTCAATGTTCA-AAGCGAGAA-TTGATTT-----GTCT--------------------------------------------------------------AAAATATGTTATATATAAAACTAGGCCAC---AAA----ATTCTGTTTCAA-TGCAATGA-----GG---A-GT-------------TGGATTC--------------------------------------------------------------TTGCAAA-------------------T-------------------------------------------------------------------ATTATTTATTA-ACTAAACCA--------------TCTATTTT---TCCTATCT--TTTG-TTT---------TTGCAGTCCCCGGAAACGTCCGCCCAGCGATCACCAGGACTACGGCAAAGA---------TG---------
droYak3 3R:9815906-9816235 + CT--TTGATGTG----------------------TCT-AGCAA-ATG----------------------------------CCG-CCGA--TGCCTGCGTGTTTATGTATATCTTTATCG-CCCAGTT-TCTAGCTT--CT--AT----ATGTAG--------------------AT-----------------------------TGACTGATAAAATCAAGAATCGCTATCTGGGTCAATGCTCA-AAGCGGGAA-TTGATTC-----GTCT--------------------------------------------------------------AAAATCGGTTATAAATAGAACTAGGCCAGCAAGAGTATAAGTCTCATTCAA-TGCAATGA-----AC---A-GT-------------T----TCTTATTTT----------------------------------------------------------------ATATAACAAT--TGAAAT------------------------------------------------------------------ACTTATTTTTTT-ACTAAACCA--------------TCTGTATT---TCCCATCC--T---ATAT---------TTGCAGTCCCCGGAAACGTCCGCCCAGCGATCACCAGGACTACAGCAACTA---------CG---------
droEre2 scaffold_4770:15834379-15834707 - CT--TTGATGTG----------------------TCTAAGCAA-ATG----------------------------------CCG-CCAA--TGCCTGCGTGTG----TATATCTTTATCG-CCCAGTT-TCTGGCTT--CT--AT----ATGTAG--------------------AT------------------------------GGCTGATAAAATCAAGAATCCTAATCTGGGTCAATGCTCA-AAGCGGGAA-TTGATTT-----GTCC------------------------------------------------------------TAAAAATGTGTTATATATAGAACACGGCCAA---A-----------CTTTCAA-GGCAGTGA-----AG---ATGT-------------TGCA--C--------------------------------------------------------------ATGCAAATAATAT------ATTAT-----------------------------------AATATTTATTTATAT-------------ATATAA---TATCTATTT-ACTAAACCA--------------TCTGTTAT---GCCCATCT--T----ACT---------TTGCAGTTCCCGGAAACGTCCGCCCAGCGATCACCAGGACTACAACAACTA---------TG---------
dp5 2:5205561-5205812 - CC-TTTGAA----------------------GTC--AAACCCA-AAG----------------------------------CCT-CCAAC-AGACTGCGTGTC----TATATCTTTATCT-G----TT-CATAGAATGTAC--AT----ATGTAT--------------------GTG------TGTGCCTGTGCGCGTGTGTGGG---------------------------TGGGCCACAGCG------CTGTCC-ATGATTTGCATCGCCC------------------------------------------------------------CAAAAAT-----------------------------------------------------------------G-TA-------------TCATTTT------------------------------------------TCTTACTAA--------------------------------------------------AACAATC-----------------------------------------------------------------CACA--------------TCTATCAT---TCC---G--TT----TCG---------TTACAGCTCGAGGAAACGTCCGTCCAGCGATCATCAGGACTATGGCAGCAGTCCGGGCAATG---------
droPer2 scaffold_19:915683-915934 - CC-TTTGAA----------------------GTC--AAACCCA-AAG----------------------------------CCC-CCAAC-AGACTGCGTGTC----TATATCTTTATCT-G----TT-CATAGAATGTGC--AT----ATGTGT--------------------GTG------TGTGCCTGTGTGCGTGTGTGGG---------------------------TGGGCCACAGCG------CTGTCC-ATGATTTGCATCGCCC------------------------------------------------------------CAAAAAT-----------------------------------------------------------------G-TG-------------TGATTTT------------------------------------------TCTTACTAT--------------------------------------------------AACAATC-----------------------------------------------------------------CCCA--------------TCTATCAT---TCC---G--TT----TCG---------TTACAGCTCGAGGAAACGTCCGTCCAGCGATCATCAGGACTATGGCAGCAGTCCGGGCAATG---------
droWil2 scf2_1100000004943:16297779-16298025 - CT--TTGAA----------------------GTA--CCGCCCA-CAGTAGTGGGATAAGATCACATGAGAAGGAGGAGGTGGCG-GCGA--AG-TGGGGTGTG----TACACA--------------------------------------------------------------------------------------------------ATTAGAATGAAATCTCC-GAACTAGGCCAATGCCCA-ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTGATATGCATTTATTTGAAATTAATATTC------AC-------TTG-ACT-CATCA--------------TCCATCATTC-TTCTATCTTTT----TTT---------GTTTAGCTCTCGGAAACGTCCGCCCAGTGACACTCACGAATGCGGCAACGATCAGTGCGATA---------
droVir3 scaffold_13047:10748349-10748504 - AA--ATGGG----------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----ATTAGTTATGAA-----------------------------------------------------------------------AAACA-----------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------AGATAATTTTTAGAAT------------------AATTTTCGCACAA---TATCGTTTAATCTAATCCC----------------TACCTT---GCTC-----TTTCT-CTC---------TTGCAGCTCACGGAAGCGTCCGCCAAGCGACTCTTATGATTGCAGCAGCGATCAATGCAAAG---------
droMoj3 scaffold_6540:31046748-31046877 + TC--ATTAA----------------------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------GATA---------------------TTT------TTTTAACTTTTC-ACTAATCTC--------------CTCTTTAT---CCTTGCTT--G---AATC---------TTACAGCTCACGGAAGCGTCCGCCCAGCGACACCTATGATTGCAGCAGCGATCAATGCAAAGTCGACGGGA
droGri2 scaffold_14624:519458-519575 - AT--ATATT----------------------AA------ATAA-ATC----------------------------------CCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ATCTAACTC--------------------AATC-TGATATCTTTT----TGTATCTGTGTATTGCAGTTCTCGGAAGCGTCCGCCGAGCGACAGTTACGATTGCAGCAGTGATCAGTGCAAAG---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CT--TTGAA----------------------GTCGCAAAGCTA-AAG----------------------------------CTG-CCGA--TGCCTGCGTGTC----TATATCTTTATCG-TCTAATT-TG-----------------------------------------------------TGTATAT--------GCGGGGGTGGCTGATAGAATCATGTCTCA-GAACTAGA-----GCTCA------GAAA-TTGATTT-----TCCAATCAAGGG---ACA---------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------GGGTCATCTATTAAATA---------------------TTA------AATTAATTTTAA-ACTAAATAT--------------TATTTTAT---T-----C--TT----TTC---------TTACAGCTCACGGAAACGTCCGCCCAGCGATCACCAGGACTACGG------TCCCAGCAAGG---------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACGGAAACGTCCGCCCAGC...........................................2211.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCGCCCAGCGATCACCAGGACTACA...........................2811.001100000
droBip1
CT--TTGAA----------------------GTCGAAAAGCTA-AAG----------------------------------CTG-TCGATATGCCTGCGTGTC----TATATCTTTATCG-TTT-------------------A----------------------------------------------T--------GCGGGGGTGGCTGATAACATCATGTCTTA-GAACTGGGACAC---ACA-------AAA-TTGATTT-----TCCAAAAAA--GG-GATA---------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------AGGTCA------------------------------------------------------------TTC--------------TCTAAAATGTTTTCAATTC-TT----TCA---------TTGCAGCTCACGGAAACGTCCGCCCAGCGATCACCAGGACTACGG------TCCCAGCAAGG---------SizeHit CountTotal NormTotal
No Reads
droKik1
CT--TTGAT----------------------GTC--TAAGCCA-TAG----------------------------------CTG-CCGA--TGCCTGCGTGTC----TATATCTTTATCG-TTCACA-----------------T----ATATATAAATATGCTATAGTATGGAGATGTTTTGTGCACTTT--------GTGGGGGCGACCGATAAAATCAAGAATCA-GAACTGGGTCAA--------AGCTGCAA-CTGATTT-----GTCATTGAAGTGA-GGTG--GAAA-----------TTGGGTCGGAATTTCTGAAGTGAGATCACAGAAAAC-----------------------------------------------------------------G-GG-------------TCCTTTC------------------------------------------TATTTTTATTAATGTATTTTTTACGAATAGTAA------A------TAGTCTGTATAAACTCAA------------------------------------------------------------T-ACTAAATA---------------TATGATTT---TCCC-----TT----ACT---------TTCCAGCTCACGGAAACGTCCGCCCAGCGATCATCATGACTATGGCAGCGATCCGAGCAAGG---------SizeHit CountTotal NormTotal
No Reads
droFic1
CT--TTGAT----------------------GTCG-AAAGCTA-AAG----------------------------------CTG-CCGA--TGACTGCGTGTC----TATATCTTTATCG-GCCAGTT-TCTAGTTG--CTGTACTCGTATGTAG--------------------ATC------GCAGCCT--------GTGGGGGCGACTGATAAAATCAAGAATCA-AAACTGGGTCAATGCTCA-GAGCTGGAA-TTGATTT-----GCCACTGAAATGG-AAGGAGGTTTTTAAATCTATGTTGCG------------------------TAAAAATTTGTTATACTTCAATTTA----------------------------CTTCAATTTATATTATTA-G-AGAAATTATTATACAT----TTTGAGCTTACTAGTTTGAGTTTCTCCTTTTCCTTTATTTTAAT----------------------------TTTATAAGA-------------------------------------------ATT---------------------ATT------TCTTAT-TGATA-ACTAACCTT--------------TCT----T---TTCC-----TCTCT-TTT---------TTCCAGTCCTCGGAAACGTCCGCCCAGCGATCACCAGGACTACAGCAGCGATCCCAACAAGG---------SizeHit CountTotal NormTotal
No Reads
droEle1
CT--TTGAT----------------------GTC--TAAGCTA-AGG----------------------------------CTG-CCGA--TGCCTGCGTGTC----TATATCTCTATCG-GCCAGTTTTTCAGTTT--CT--AT----ATGTAG--------------------ATG------AGTGCTT--------GTGTGGGTGGCTGATAAAATCAAGAATCA-GAACTGGGTCAATGCTTA-GAGTTGAAA-TTGATTT-----GCCACTGAAAAGA-GATG-----------------------------------------------------------------------GGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CT--TTGAT----------------------GTC--TAAGCTA-AGG----------------------------------CTG-CCGAT-TGCCTGCGTGTC----TATATCTTTATCG-GCCAGTTTTCTAGTTT--CT--AT----ATGTAG--------------------ATG------AGTGCTT--------GTGGGGGTGGCTGATAAAATCAAGAATCA-CAACTGGGTCAATGCTTT-GAGTTGCAA-TTGATTT-----GCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CT--TTGAT----------------------GTC--GA-GCCA-A--------------------------------------G-CCGC--TGCCTGCGTGTC----TATATCTTTATCG-GCCAGTT-TCTAGCTT--CT--GT----ATGTAG--------------------ATG------AGTGCTT--------GTGGGGGTGGCCGATAAAATCAAGAATCA-AAACTGGGTCAATGCTCA-G-GCCGGAA-TGGATTT-----GCCAATGAGAGGG-G----------------------------------------------------------GTTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA----------------------------------------------------------------------AGTACTTGTAA-GATAAA------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CT--TTGAT----------------------GTTGGTAAGCCAAAGG----------------------------------CTG-CCGTT-TGCCTGCGTGTC----TATATCTTTATCG-GCCAGTT-TCTAGTTT--CT--AT----ATGTAG--------------------ATG------AGCGCTT--------GTGGGGGTGGCTGATAAAATCAAGAATCA-AAACTGGGTCAATGCTCA-GAGCTGGAA-TTGATTT-----GTTAATGAAATAGGGAGG-GGTA----------------------------------------------------TG-CAATAGAAGTAGGTCAAGAA--G----ATTGTCATTTAACTTCAA--------ACTT-G-AGAGATTAAAATATTT----TTTAATCTA----------------------------------------------------------------AGATATCAATAATAA-----------------------------------AATAATATTTTATTA-------------AGATAA---TCTCTTTAT-ATTAAACTTAAATAATTTTTTAAACTTTTTT---CCCCCTC--TT----TTC---------TTTCAGTCCCCGGAAACGTCCGCCCAGCGATCTGCAGGACTACAGCAACTA------CGAGG---------SizeHit CountTotal NormTotal
No Reads
droEug1
CT--TTGATGTGTGTGTCTGTCTCAGCTGAAGCT--ATAGCTA-AAG----------------------------------CTG-CCGA--TGCCTGCGTGTC----TATATCTTTATCG-GCCAGTT-TCTAGTCT--CT--AT----ATGTAG--------------------ATG------AATGCCT--------GTGGGGGTGGCTGATAAAATCAACAATCA-AATCTGGGTCAATGCTAAAAAGCTGGAA-TTGATTT-----GCCACTGAAATGT-GATA-----------------CTGG---------------------------CAAATCTGTTCTATAGGAAACTAGGCA-----------------------------GTCT-----TG---ATGC-------------TT---------------------------------------------------------------------------AACTC------------------------------------------------TA---------------------TTC-TACAA---AC----TTT-ACTAAACAA--------------ACTTTCTT---TCTT------------GTATCTTTCATTTTCAGTCCCCGGAAACGTCCGCCCAGCGATCAGCAGGACTACAGCAACTA---------TG---------SizeHit CountTotal NormTotal
No Reads
dm3
CT--TTGATGTG----------------------TCTAAGCAA-ATG----------------------------------CCG-CCAA--TGTCTGTGTGTG----TATATCTTTATCG-CCCAGTT-TCTAGCTTCTCT--AT----ATGTAG--------------------AT------------------------------GACTGATAAAATCAAGAATGATAATCTGGGTCAATGTTTG-AAGCGGGAA-TTGAGTT-----GTTT--------------------------------------------------------------AAAATGTGTTATATATAGAACTAGGCCAT---GAGTACAGCTCTGTTTCAA-TGCAACGA-----AG---A-GG-------------TGCTTTC--------------------------------------------------------------TTACAAATAATAT-------------------------------------------------------------------------A------TATTATTTATTT-ACTAAATCC--------------TCTGTTTT---TCCCATCTTATTTT-TTT---------TTGCAGTTCCCGGAAACGTCCGCCCAGCGATCACCAGGACTACGGCAACTATC------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTCCGCCCAGCGATCACC....................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATCACCAGGACTACGGCAACA.....................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TTCAA-TGCAACGA-----AG---A-GG-------------TGCTT..............................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCCCAGCGATCACCAGGACTACG...........................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCAGGACTACGGCAAC......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATCACCAGGACTACGGCAA.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCGATCACCAGGACTACGGC.........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCAGGACTACGGCAACT.....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---------TTGCAGTTCCCGGAAACGTCCGCC...............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGGAAACGTCCGCCCAGCGAT........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCCGCCCAGCGATCACC....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGAAACGTCCGCCCA.............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCGCCCAGCGATCACCAG..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAACGTCCGCCCAGCGATCA......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGCGATCACCAGGACTACG...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTC--------------------------------------------------------------TTACAAATAATAT-------------------------------------------------------------------------A------TATTATTT.........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTACGGCAACTATC------------------1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGCGATCACCAGGA................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................A-TTGAGTT-----GTTT--------------------------------------------------------------AAAATGTGT.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATCACCAGGACTACGGCAACT.....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCTGTTTCAA-TGCAACGA-----AG---A-GG-------------TGCTT..............................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droSim2
CTGTTTGATGTG----------------------TCTAAGCAA-ATG----------------------------------CCG-CCAA--TGCCTGCATGTG----TATATCTTTATCG-CCCAGTT-TCTGGCTTCTCT--AT----ATGTAG--------------------AT------------------------------AACTGATAAAATCAAGAATCATAATCTGGGTCAATGTTCA-AAGCGGGATTTTGATTT-----ATCT--------------------------------------------------------------AAAATGTGTTATATATAAAACTAGGCCAT---GAGT----TTCTGTTTCAA-TGCAATGA-----AG---A-GT------------------------------------------------------------------------------------------AATAT----------------------------------------------AATA---------------------ATA------TATTATTTATTA-ACTAAACCA--------------TCTGTTTT---TCCCATCT--T---ATTT---------TTGCAGTCCCCGGAAACGTCCGCCCAGCGATCACCAGGACTACGGCAAAGA---------TG---------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCCGCCCAGCGATCACCAGGACC..............................2612.00200200000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCAGCGATCACCAGGAC...............................2012.00200200000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGATCACCAGGACTA.............................1811.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCCGCCCAGCGATCACCAGGACT..............................2611.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGCGATCACCAGGACTACGGCAA.......................2711.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCCGCCCAGCGATCACCAGGAC...............................2511.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCAGCGATCACCAGGACTACG...........................2411.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCCCAGCGATCACCAGGACTACGG..........................2811.00100010000000000000
droSec2
CTGTTTGATGTG----------------------TCTAAGCAA-ATG----------------------------------CCGGCCAA--TGCCTGCGTGTG----TATATCTTTATCGACCCAGTT-TCTAGCTTCTCT--AT----ATGTAG--------------------AT------------------------------AACTGATAAAATCAAGAACCATAATCTGGGTCAATGTTCA-AAGCGAGAA-TTGATTT-----GTCT--------------------------------------------------------------AAAATATGTTATATATAAAACTAGGCCAC---AAA----ATTCTGTTTCAA-TGCAATGA-----GG---A-GT-------------TGGATTC--------------------------------------------------------------TTGCAAA-------------------T-------------------------------------------------------------------ATTATTTATTA-ACTAAACCA--------------TCTATTTT---TCCTATCT--TTTG-TTT---------TTGCAGTCCCCGGAAACGTCCGCCCAGCGATCACCAGGACTACGGCAAAGA---------TG---------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATCACCAGGACTACGGC.........................2011.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGTCCGCCCAGCGAT........................................1911.0010001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATCACCAGGACTACGGC.........................2111.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCCGCCCAGCGATCACC....................................2011.0010010
droYak3
CT--TTGATGTG----------------------TCT-AGCAA-ATG----------------------------------CCG-CCGA--TGCCTGCGTGTTTATGTATATCTTTATCG-CCCAGTT-TCTAGCTT--CT--AT----ATGTAG--------------------AT-----------------------------TGACTGATAAAATCAAGAATCGCTATCTGGGTCAATGCTCA-AAGCGGGAA-TTGATTC-----GTCT--------------------------------------------------------------AAAATCGGTTATAAATAGAACTAGGCCAGCAAGAGTATAAGTCTCATTCAA-TGCAATGA-----AC---A-GT-------------T----TCTTATTTT----------------------------------------------------------------ATATAACAAT--TGAAAT------------------------------------------------------------------ACTTATTTTTTT-ACTAAACCA--------------TCTGTATT---TCCCATCC--T---ATAT---------TTGCAGTCCCCGGAAACGTCCGCCCAGCGATCACCAGGACTACAGCAACTA---------CG---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTCCGCCCAGCGATCACCAGGACT..............................2811.00110000000000
droEre2
CT--TTGATGTG----------------------TCTAAGCAA-ATG----------------------------------CCG-CCAA--TGCCTGCGTGTG----TATATCTTTATCG-CCCAGTT-TCTGGCTT--CT--AT----ATGTAG--------------------AT------------------------------GGCTGATAAAATCAAGAATCCTAATCTGGGTCAATGCTCA-AAGCGGGAA-TTGATTT-----GTCC------------------------------------------------------------TAAAAATGTGTTATATATAGAACACGGCCAA---A-----------CTTTCAA-GGCAGTGA-----AG---ATGT-------------TGCA--C--------------------------------------------------------------ATGCAAATAATAT------ATTAT-----------------------------------AATATTTATTTATAT-------------ATATAA---TATCTATTT-ACTAAACCA--------------TCTGTTAT---GCCCATCT--T----ACT---------TTGCAGTTCCCGGAAACGTCCGCCCAGCGATCACCAGGACTACAACAACTA---------TG---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................GAACACGGCCAA---A-----------CTTTCAA-GGCAGT................................................................................................................................................................................................................................................................................................................................................2611.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGCGATCACCAGGACTAC............................2111.0010000100
dp5
CC-TTTGAA----------------------GTC--AAACCCA-AAG----------------------------------CCT-CCAAC-AGACTGCGTGTC----TATATCTTTATCT-G----TT-CATAGAATGTAC--AT----ATGTAT--------------------GTG------TGTGCCTGTGCGCGTGTGTGGG---------------------------TGGGCCACAGCG------CTGTCC-ATGATTTGCATCGCCC------------------------------------------------------------CAAAAAT-----------------------------------------------------------------G-TA-------------TCATTTT------------------------------------------TCTTACTAA--------------------------------------------------AACAATC-----------------------------------------------------------------CACA--------------TCTATCAT---TCC---G--TT----TCG---------TTACAGCTCGAGGAAACGTCCGTCCAGCGATCATCAGGACTATGGCAGCAGTCCGGGCAATG---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAACGTCCGTCCAGCGATC.......................................2311.0010001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGACTATGGCAGCAGTCCGGGC.............2611.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATCAGGACTATGGCAGC......................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGGACTATGGCAGCA.....................1911.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGAAACGTCCGTCCAGCGATCAT.....................................2611.0010010000000
droPer2
CC-TTTGAA----------------------GTC--AAACCCA-AAG----------------------------------CCC-CCAAC-AGACTGCGTGTC----TATATCTTTATCT-G----TT-CATAGAATGTGC--AT----ATGTGT--------------------GTG------TGTGCCTGTGTGCGTGTGTGGG---------------------------TGGGCCACAGCG------CTGTCC-ATGATTTGCATCGCCC------------------------------------------------------------CAAAAAT-----------------------------------------------------------------G-TG-------------TGATTTT------------------------------------------TCTTACTAT--------------------------------------------------AACAATC-----------------------------------------------------------------CCCA--------------TCTATCAT---TCC---G--TT----TCG---------TTACAGCTCGAGGAAACGTCCGTCCAGCGATCATCAGGACTATGGCAGCAGTCCGGGCAATG---------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGGACTATGGCAGCA.....................1913.003300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGTCCGTCCAGCGAT........................................1911.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGTCCGTCCAGCGA.........................................1811.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCATCAGGACTATGGC.........................1911.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGACTATGGCAGCAGT...................1911.001000001
...............................................................................................................................................................................GTG------TGTGCCTGTGTGCGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20100.101000001
droWil2
CT--TTGAA----------------------GTA--CCGCCCA-CAGTAGTGGGATAAGATCACATGAGAAGGAGGAGGTGGCG-GCGA--AG-TGGGGTGTG----TACACA--------------------------------------------------------------------------------------------------ATTAGAATGAAATCTCC-GAACTAGGCCAATGCCCA-ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTGATATGCATTTATTTGAAATTAATATTC------AC-------TTG-ACT-CATCA--------------TCCATCATTC-TTCTATCTTTT----TTT---------GTTTAGCTCTCGGAAACGTCCGCCCAGTGACACTCACGAATGCGGCAACGATCAGTGCGATA---------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCACGAATGCGGCAACGAT...................2111.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGCAACGATCAGTGCGATA---------2311.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCACGAATGCGGCAACGATCAGT...............2511.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTCGGAAACGTCCGCCCAGT...........................................2411.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCAACGATCAGTGCG............1911.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGCAACGATCAGTGCG............2011.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAATGCGGCAACGATCAGTGCGAT..........2711.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGAAACGTCCGCCCAGTGACACTC....................................2711.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACACTCACGAATGCGGC.........................2011.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACTCACGAATGCGGCAACGAT...................2411.00100100
droVir3
AA--ATGGG----------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----ATTAGTTATGAA-----------------------------------------------------------------------AAACA-----------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------AGATAATTTTTAGAAT------------------AATTTTCGCACAA---TATCGTTTAATCTAATCCC----------------TACCTT---GCTC-----TTTCT-CTC---------TTGCAGCTCACGGAAGCGTCCGCCAAGCGACTCTTATGATTGCAGCAGCGATCAATGCAAAG---------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTTATGATTGCAGCAGCGAT...................2412.002000000000000001000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCAAGCGACTCTTATG.................................1911.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCCAAGCGACTCTTATGATTG.............................2511.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTTATGATTGCAGC.........................1811.001000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGCGACTCTTATGATTGCAGCAGCGATCAATGCAAAG---------4011.001000000000000000000000000000000000000000000000000000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTATGATTGCAGCAGC......................1911.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTATGATTGCAGCGA.......................1850.201000000000000000000000000000000000000010000000000000000000000000
droMoj3
TC--ATTAA----------------------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------GATA---------------------TTT------TTTTAACTTTTC-ACTAATCTC--------------CTCTTTAT---CCTTGCTT--G---AATC---------TTACAGCTCACGGAAGCGTCCGCCCAGCGACACCTATGATTGCAGCAGCGATCAATGCAAAGTCGACGGGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCTATGATTGCAGCAGC......................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAAGCGTCCGCCCAGCGACACA.....................................2511.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTATGATTGCAGCAGC......................2011.001100000
droGri2
AT--ATATT----------------------AA------ATAA-ATC----------------------------------CCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ATCTAACTC--------------------AATC-TGATATCTTTT----TGTATCTGTGTATTGCAGTTCTCGGAAGCGTCCGCCGAGCGACAGTTACGATTGCAGCAGTGATCAGTGCAAAG---------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATTGCAGCAGTGATCAGTG..............2211.00101
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTCCGCCGAGGAC.........................................18200.05101

Generated: 05/18/2015 at 05:51 AM