ID:

dan_2915

 Coordinate:

scaffold_13340:6039113-6039185 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.6 -5.4 -5.0

Flybase annnotation

exon [dana_GLEANR_19094:3]; CDS [Dana\GF17832-cds]; CDS [Dana\GF17832-cds]; exon [dana_GLEANR_19094:2]; intron [Dana\GF17832-in]

No Repeatable elements found

mature
  1. dan_2915  scaffold_13340:6039122-6039142 +
  2. dan_2916  scaffold_13340:6055573-6055593 +
star
  1. dan_2915  scaffold_13340:6039161-6039180 +
  2. dan_2916  scaffold_13340:6055612-6055631 +

Sense Strand Reads

##################################################-------------------------------------------------------------------------##################################################
CAGTGTGGAGGCTGTTTCCAGGGATTCGGATCACCCTATATGTACAACCCGTATGGATTTAATCCGTTTGTGCCTTTCCCTTCCTACGGAGGTCCCGAATAATATCCCGAATAATGATTTAAGCAATACAGGAAACGACATAGATGACAAGAACGTGGCAGGATCAGGAGACT
***********************************************************......(((((.(((..(((........))))))..)))))..................******************************************************* 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M044
female body
 M058
embryo
 V039
embryo
 V106
head
 V055
head
..............................................................................................................................................GATGACAAGAACGTGGCAGGAT......... 22 0 2 5.00 10 5 3 2 0 0 0
......................................................................................................................................................GAACGTGGCAGGATCAGGA.... 19 0 2 3.50 7 2 5 0 0 0 0
........................................................................................................................................GACATAGATGACAAGAACGTGGCA............. 24 0 2 3.00 6 4 1 1 0 0 0
..............................................................................................................................................GATGACAAGAACGTGGCAGG........... 20 0 2 3.00 6 4 0 2 0 0 0
.............................................................................................................................................AGATGACAAGAACGTGGCA............. 19 0 2 2.50 5 2 3 0 0 0 0
..............................................................................................................................................GATGACAAGAACGTGGCAGGATC........ 23 0 2 2.50 5 2 1 2 0 0 0
......................................................................................................................................................GAACGTGGCAGGATCAGGAGA.. 21 0 2 2.50 5 3 2 0 0 0 0
...........................................................................................................................................ATAGATGACAAGAACGTGGCA............. 21 0 2 2.00 4 2 1 0 1 0 0
...........................................................................................................................................ATAGATGACAAGAACGTGGCAGG........... 23 0 2 2.00 4 2 2 0 0 0 0
........................................................................................................................................GACATAGATGACAAGAACGT................. 20 0 2 2.00 4 4 0 0 0 0 0
...................................................................................................................................................CAAGAACGTGGCAGGATCA....... 19 0 2 1.50 3 2 1 0 0 0 0
.........GGCTGTTTCCAGGGATTCGG................................................................................................................................................ 20 0 2 1.50 3 0 3 0 0 0 0
.................................................................................................................................................GACAAGAACGTGGCAGGATC........ 20 0 2 1.50 3 0 1 2 0 0 0
.....................................................................................................................................AACGACATAGATGACAAGAAC................... 21 0 2 1.50 3 1 0 2 0 0 0
...........................................................................................................................................ATAGATGACAAGAACGTGGCAGGATC........ 26 0 2 1.50 3 2 1 0 0 0 0
..............................................................................................................................................GATGACAAGAACGTGGCA............. 18 0 2 1.50 3 0 1 0 1 0 1
.......GAGGCTGTTTCCAGGGATTCGG................................................................................................................................................ 22 0 2 1.50 3 1 1 1 0 0 0
..........................................................................................................................GCAATACAGGAAACGACATAGAT............................ 23 0 2 1.00 2 0 0 0 0 2 0
..................................................................................................................................................ACAAGAACGTGGCAGGATCAGGAGA.. 25 0 2 1.00 2 0 2 0 0 0 0
...........................................................TAATCCGTTTGTGCCTTTCCC............................................................................................. 21 0 2 1.00 2 0 1 1 0 0 0
..................................................................................................ATAATATCCCGAATAATGAT....................................................... 20 0 2 1.00 2 0 0 0 2 0 0
........................................................................................................................................GACATAGATGACAAGAACGTGGCAGGAT......... 28 0 2 1.00 2 2 0 0 0 0 0
..........................................................................................................................GCAATACAGGAAACGACATA............................... 20 0 2 1.00 2 0 0 1 1 0 0
............................................................................................................................AATACAGGAAACGACATAGAT............................ 21 0 2 1.00 2 1 0 0 0 1 0
..............................................................................................................................................GATGACAAGAACGTGGCAGGATCAGGA.... 27 0 2 1.00 2 2 0 0 0 0 0
........................................................................................................................................GACATAGATGACAAGAACGTGGCAGG........... 26 0 2 1.00 2 2 0 0 0 0 0
.......................................................................................................................................CGACATAGATGACAAGAACGTGGCAG............ 26 0 2 1.00 2 1 1 0 0 0 0
.....................................................................................................................................AACGACATAGATGACAAGAACGT................. 23 0 2 1.00 2 2 0 0 0 0 0
..........................................................................................................................................CATAGATGACAAGAACGTGGCAGGATC........ 27 0 2 1.00 2 1 1 0 0 0 0
...................................................................................................................GATTTAAGCAATACAGGAAACGAC.................................. 24 0 2 1.00 2 0 1 1 0 0 0
.................................................................................................................................................GACAAGAACGTGGCAGGATCAGG..... 23 0 2 1.00 2 1 0 1 0 0 0
................................................................................................................................................TGACAAGAACGTGGCAGGA.......... 19 0 2 1.00 2 1 0 1 0 0 0
...........................................................................................................................................ATAGATGACAAGAACGTGGCAGGAT......... 25 0 2 1.00 2 1 1 0 0 0 0
.........GGCTGTTTCCAGGGATTCGGAT.............................................................................................................................................. 22 0 2 1.00 2 1 1 0 0 0 0
.................................................................................................................................................GACAAGAACGTGGCAGGA.......... 18 0 2 1.00 2 0 0 1 1 0 0
..........................................................................................................................................CATAGATGACAAGAACGTGGCAGGAT......... 26 0 2 1.00 2 1 1 0 0 0 0
...........................................................................................................................................ATAGATGACAAGAACGTGGCAG............ 22 0 2 1.00 2 0 1 1 0 0 0
......................................................................................................................TTAAGCAATACAGGAAACGACATA............................... 24 0 2 1.00 2 1 0 1 0 0 0
.............GTTTCCAGGGATTCGGATC............................................................................................................................................. 19 0 2 1.00 2 0 2 0 0 0 0
..........................................................................................................................................CATAGATGACAAGAACGTGGCAGG........... 24 0 2 1.00 2 2 0 0 0 0 0
........................................................................................................................................GACATAGATGACAAGAACGTGGC.............. 23 0 2 1.00 2 1 0 1 0 0 0
......................................................................................................................................................GAACGTGGCAGGATCAGG..... 18 0 2 1.00 2 1 1 0 0 0 0
......................................................................................................................................ACGACATAGATGACAAGAACGTGGCA............. 26 0 2 1.00 2 2 0 0 0 0 0
............................GATCACCCTATATGTACAACCCGT......................................................................................................................... 24 0 2 1.00 2 1 0 1 0 0 0
.......................................................................................................................................CGACATAGATGACAAGAACGT................. 21 0 2 1.00 2 1 1 0 0 0 0
.................................................................................................................................................GACAAGAACGTGGCAGGATCAGGA.... 24 0 2 1.00 2 1 1 0 0 0 0
...................................................................................................................GATTTAAGCAATACAGGAAACGA................................... 23 0 2 1.00 2 0 0 2 0 0 0
.............................................................................................................................................AGATGACAAGAACGTGGCAGG........... 21 0 2 1.00 2 1 1 0 0 0 0
.....................................................................................................................................AACGACATAGATGACAAGAACGTGGCA............. 27 0 2 1.00 2 1 1 0 0 0 0
....................................................................................................................................AAACGACATAGATGACAAGAAC................... 22 0 2 1.00 2 0 0 1 1 0 0
.......................................................................................................................................CGACATAGATGACAAGAACGTGGCA............. 25 0 2 1.00 2 2 0 0 0 0 0
..........................................................................................................................................CATAGATGACAAGAACGTGGCAGGA.......... 25 0 2 0.50 1 0 0 1 0 0 0
........................................................................................................................................GACATAGATGACAAGAAC................... 18 0 2 0.50 1 0 0 1 0 0 0
...............................CACCCTATATGTACAACCCGT......................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................................................................AGAACGTGGAAGGATCAG...... 18 1 2 0.50 1 1 0 0 0 0 0
............................................................AATCCGTTTGTGCCTTTCCCTT........................................................................................... 22 0 2 0.50 1 0 1 0 0 0 0
....................................................ATGGATTTAATCCGTTTGTGCC................................................................................................... 22 0 2 0.50 1 0 0 1 0 0 0
.......................................ATCTACAACCCGTATGGATTTAATC............................................................................................................. 25 1 2 0.50 1 0 0 1 0 0 0
.......................................................................................................................................................AACGTGGCAGGATCAGGAGAC. 21 0 2 0.50 1 0 0 1 0 0 0
..........................................................TTAATCCGTTTGTGCCTTTCCCTTCT......................................................................................... 26 1 2 0.50 1 0 0 1 0 0 0
.................................................................................................................................................GAAAAGAACGTGGCAGGATC........ 20 1 2 0.50 1 0 0 1 0 0 0
.......................................................................GCCTTTCCCTTCCTACGGA................................................................................... 19 0 2 0.50 1 0 1 0 0 0 0
...................................................................................................................................................CAAGAACGGGGCAGGATCAGGA.... 22 1 2 0.50 1 0 1 0 0 0 0
............................................................................................................................AATACAGGAAACGACATA............................... 18 0 2 0.50 1 0 0 0 1 0 0
........................................................................................................................................GACGTAGATGACAAGAACGTG................ 21 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................................................AAAGACATAGATGACAAGAACGTGGC.............. 26 1 2 0.50 1 0 0 1 0 0 0
..............................................................................................................................................GATGACAAGAACGTGGCAGGA.......... 21 0 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................GATGACAAGAACGTGGCAG............ 19 0 2 0.50 1 0 1 0 0 0 0
...................................CTATATGTACAACCCGTATGGATT.................................................................................................................. 24 0 2 0.50 1 0 1 0 0 0 0
..................................................................................................ATAATATCCCGAATAATGATTTAAGC................................................. 26 0 2 0.50 1 0 0 1 0 0 0
...............TTCCAGGGATTCGGATCACCCT........................................................................................................................................ 22 0 2 0.50 1 0 0 0 0 1 0
.................CCAGGGATTCGGATCACCCTATATGTAC................................................................................................................................ 28 0 2 0.50 1 0 1 0 0 0 0
........................................................................................................................................GACATAGATGGCAAGAACGTGGCA............. 24 1 2 0.50 1 1 0 0 0 0 0
.............GTTTCCAGGGATTCGGATCACT.......................................................................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
.......GAGGCTGTTTCCAGGGATTCGGAT.............................................................................................................................................. 24 0 2 0.50 1 0 1 0 0 0 0
.............................................................................................CCCGAATAATATCCCGAATAATGAT....................................................... 25 0 2 0.50 1 0 0 1 0 0 0
..............................................................................................................................................GATGACAAGAACGTGGCAGGATCAG...... 25 0 2 0.50 1 0 1 0 0 0 0
.............................ATCACCCTATATGTACAACCCGTATG...................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................GCCATAGATGACAAGAACGTGGC.............. 23 1 2 0.50 1 1 0 0 0 0 0
..........GCTGTTTCCAGGGATTCGG................................................................................................................................................ 19 0 2 0.50 1 0 0 1 0 0 0
.....................................................................................................................TTTAAGCAATACAGGAAACGACAT................................ 24 0 2 0.50 1 1 0 0 0 0 0
.......................................................GATTTAATCCGTTTGTGCCTT................................................................................................. 21 0 2 0.50 1 0 0 1 0 0 0
...........................................................TAATCCGTTTGTGCCTTTCC.............................................................................................. 20 0 2 0.50 1 0 0 1 0 0 0
............................................................................................................................AATACAGGAAACGACATAGATGACAA....................... 26 0 2 0.50 1 1 0 0 0 0 0
....................................................................................TACGGAGGTCCCGAATAATATCCC................................................................. 24 0 2 0.50 1 0 0 1 0 0 0
.....................................ATGTGTACAACCCGTATGGATT.................................................................................................................. 22 1 2 0.50 1 0 1 0 0 0 0
........................................................................................................................................GACATAGATGACAAGAACGTGGCAGGA.......... 27 0 2 0.50 1 0 1 0 0 0 0
................................................................................................GAATAATATCCCGAATAATGATTTAAGC................................................. 28 0 2 0.50 1 0 0 1 0 0 0
...........................................................................................................................CAATACAGGAAACGACATA............................... 19 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................AGGAAACGACATAGATGACAAGAAC................... 25 0 2 0.50 1 0 0 1 0 0 0
.......................................................................................................................................CGACATAGATGACAAGAACGTGGC.............. 24 0 2 0.50 1 1 0 0 0 0 0
............................................................................................................................AATACAGGAAACGACATAGATGA.......................... 23 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................CATAGATGACAAGAACGTGGC.............. 21 0 2 0.50 1 0 0 1 0 0 0
.................................................................................................................................................GACTAGAACGTGGCAGGATCAGGA.... 24 1 2 0.50 1 0 0 1 0 0 0
...............TTATAGGGATTCGGATCACCCT........................................................................................................................................ 22 2 2 0.50 1 0 0 1 0 0 0
....................................................................................................................................................AAGAACGTGGCAGGATCAGGAG... 22 0 2 0.50 1 0 1 0 0 0 0
.............................................................................................................................................AGATGACAAGAACGTGGCAG............ 20 0 2 0.50 1 1 0 0 0 0 0
....................................................ATGGATTTAATCCGTTTGTGCCT.................................................................................................. 23 0 2 0.50 1 0 0 1 0 0 0
..........................................................................................................................................CATAGATGACAAGAACGTGGCA............. 22 0 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................AGATGACAAGAACGTGGCAGGATC........ 24 0 2 0.50 1 0 1 0 0 0 0
.......................................................GGTTTAATCCGTTTGTGCCTTTCCCTT........................................................................................... 27 1 2 0.50 1 0 0 1 0 0 0
....................................................................................................AATATCCAGAATAATGATTTAAGCA................................................ 25 1 2 0.50 1 0 0 1 0 0 0
.........................................................................................................................................ACATAGATGACAAGAACGTGGCAGGATC........ 28 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................AAACGACATAGATGACAAGAACGT................. 24 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................GTGGCAGGATCAGGAGACT 19 0 2 0.50 1 0 1 0 0 0 0
.............................................AACCCGTATGGATTTAATCC............................................................................................................ 20 0 2 0.50 1 0 0 0 1 0 0
.............GTTTCCAGGGATTCGGAC.............................................................................................................................................. 18 1 2 0.50 1 0 0 1 0 0 0
..................................................GTATGGATTTAATCCGTTTGTGCCT.................................................................................................. 25 0 2 0.50 1 0 0 1 0 0 0
......................GATTCGGATCACCCTATATGTA................................................................................................................................. 22 0 2 0.50 1 0 0 1 0 0 0
........AGGATGTTTCCAGGGATTCGGATAACC.......................................................................................................................................... 27 2 2 0.50 1 1 0 0 0 0 0
........................................................ATTTAATCCGTTTGTACCTT................................................................................................. 20 1 2 0.50 1 0 0 0 1 0 0
..............................................................................................................................................GATGACCAGAACGTGGCAGGATC........ 23 1 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................................ATGAAAAGAACGTGTCAGGATC........ 22 2 2 0.50 1 0 0 0 1 0 0
....................................................ATGGATTTAATCCGTTTGTGCCTTTCCC............................................................................................. 28 0 2 0.50 1 0 0 1 0 0 0
............................................................AATCCGTTTGTGCCTTTCCCTTCCTACGG.................................................................................... 29 0 2 0.50 1 0 1 0 0 0 0
............................................................................................................................................TAGATGACAAGAACGTGGC.............. 19 0 2 0.50 1 1 0 0 0 0 0
...........CTGTTTCCAGGGATTCGGAT.............................................................................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................TTACGACATAGATGACAAGAACGT................. 24 2 2 0.50 1 1 0 0 0 0 0
.......................ATTCGGATCACCCTATATGTACAACCCGT......................................................................................................................... 29 0 2 0.50 1 0 1 0 0 0 0
.........................................................................CTTTCCCTTCCTACGGAGGTCCCGA........................................................................... 25 0 2 0.50 1 0 1 0 0 0 0
...................................................................................................................................GAAACGACATAGATGACAAGAACGT................. 25 0 2 0.50 1 0 0 1 0 0 0
............................................................................................................................AATACAGGAAACGACATAGAC............................ 21 1 2 0.50 1 0 0 1 0 0 0
..............................TCACCCTATATGTACAACCCGTATG...................................................................................................................... 25 0 2 0.50 1 0 0 1 0 0 0
....................................................................................................AATATCCAGAATAATGATTTAAGC................................................. 24 1 2 0.50 1 0 0 1 0 0 0
...............................................................................................................................................ATGACAAGAACGTGGCAGGAT......... 21 0 2 0.50 1 0 0 1 0 0 0
......................................................................................................................................ACGACATAGATGACAAGAACGTG................ 23 0 2 0.50 1 0 0 0 0 1 0
..............................................................................................................................................GATGACAAGAACGTGGCAGGAC......... 22 1 2 0.50 1 0 0 1 0 0 0
..GTGTGGAGGCTGTTTCCAG........................................................................................................................................................ 19 0 2 0.50 1 1 0 0 0 0 0
....................................................AGGGATTTAATCCGTTTGTGC.................................................................................................... 21 1 2 0.50 1 0 0 1 0 0 0
CAGTGTGGAGGCTGTTTCCAGGGA..................................................................................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0
.....................................................TGGATTTAATCCGTTTGTGCC................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0
...............................................................................................................................................ATGACAAGAACGTGGCAGG........... 19 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................ATCCAGAATAATGATTTAAGC................................................. 21 1 2 0.50 1 0 0 1 0 0 0
.......GAGGCTGTCTCCAGGGATTC.................................................................................................................................................. 20 1 2 0.50 1 0 1 0 0 0 0
.............GTTTCCAGGGATTCGGATCACCCT........................................................................................................................................ 24 0 2 0.50 1 0 1 0 0 0 0
.............GTTTCCAGGGATTCGGAT.............................................................................................................................................. 18 0 2 0.50 1 0 0 0 1 0 0
....................................................................................................................ATTTAAGCAATACAGGAAACGACATA............................... 26 0 2 0.50 1 0 0 0 1 0 0
..........GCTGTTTCCAGGGATTCGGATCACCCC........................................................................................................................................ 27 1 2 0.50 1 0 0 1 0 0 0
..............................................................................................................ATAATGATTTAAGCAATACA........................................... 20 0 2 0.50 1 0 0 1 0 0 0
............................................................................................................................AATACAGGAAACGACATAGATGAC......................... 24 0 2 0.50 1 0 0 1 0 0 0
...............................................................................CTTCTTACGGAGGTCCCGA........................................................................... 19 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................AAGAACGTGGCAGGATCAGGAGACT 25 0 2 0.50 1 0 1 0 0 0 0
.........................................GTACAACCCGTATGGATTT................................................................................................................. 19 0 2 0.50 1 0 0 0 1 0 0
................................................................................................................................................TGACAAGAACGTGGCAGGATC........ 21 0 2 0.50 1 0 0 1 0 0 0
CAGTGTGGAGGCTGTTTCCAGGGATT................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................AATAATATCCCGAATAATGATTTAAGC................................................. 27 0 2 0.50 1 0 0 1 0 0 0
...................................................................................................................GATTTAAGCAATACAGGAAACGACATA............................... 27 0 2 0.50 1 0 0 0 1 0 0
.......................ATTCGGATCACCCTATATGTACAACCCG.......................................................................................................................... 28 0 2 0.50 1 0 1 0 0 0 0
..........................................................................................................................................CATAGATGACCAGAACGTGGCAG............ 23 1 2 0.50 1 0 0 1 0 0 0
................................................................................TTCCTACGGAGGTCCCGAAT......................................................................... 20 0 2 0.50 1 0 0 0 0 1 0
.....................................................................................................................................................AGAACGTGGCAGGATCAGGA.... 20 0 2 0.50 1 0 1 0 0 0 0
.................................................................................................................................................GACAAGAACGTGGCAGGAT......... 19 0 2 0.50 1 0 1 0 0 0 0
...................................................................................................................GATTTAAGCAATACAGGAAACG.................................... 22 0 2 0.50 1 0 0 0 1 0 0
.............................................................................................................................ATACAGGAAACGACATAGA............................. 19 0 2 0.50 1 1 0 0 0 0 0
...................................................................................................................GATTTAAGCAATACAGGAAACGACAT................................ 26 0 2 0.50 1 1 0 0 0 0 0
...............TGCTAGGGATTCGGATCACCCT........................................................................................................................................ 22 2 2 0.50 1 0 0 1 0 0 0
.......................................................................................................................................CGACATAGATGACAAGAACGTGGCAGG........... 27 0 2 0.50 1 0 1 0 0 0 0
.....................................................................................................................TTTAAGCAATACAGGAAACGAC.................................. 22 0 2 0.50 1 1 0 0 0 0 0
........................................................ATTTAATCCGTTTGTGCCTTTCCCTT........................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0
..................................................................................................................................................ACAAGAACGTGGCAGGATCAGGAG... 24 0 2 0.50 1 0 1 0 0 0 0
.................CCAGGGATTCGGATCACCC......................................................................................................................................... 19 0 2 0.50 1 0 0 1 0 0 0
.............................................................................................CCCGAATAATATCCCGAATAAT.......................................................... 22 0 2 0.50 1 0 0 1 0 0 0
.........................................................................................................................................ACATAGATGACAAGAACGTGGC.............. 22 0 2 0.50 1 0 0 1 0 0 0
.....................................................................................................................................................AGAACGTGGCAGGATCAGGAGAC. 23 0 2 0.50 1 0 0 0 0 1 0
.........GGCTGTTTCCAGGGATTCGGAC.............................................................................................................................................. 22 1 2 0.50 1 0 0 1 0 0 0
............................................................................................................................AATACAGGAAACGACATAGA............................. 20 0 2 0.50 1 0 0 0 1 0 0
.............................................................................................................................................AGATGACAAGAACGTGGCAGGAT......... 23 0 2 0.50 1 0 0 0 0 1 0
.......................................................................GCCTTTCCATTCCTACGGAG.................................................................................. 20 1 2 0.50 1 0 1 0 0 0 0
.......................................ATGTACAACCCGTATGGATTTAATCCGT.......................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0
............................GATCACCCTATATGTACAACCC........................................................................................................................... 22 0 2 0.50 1 0 0 1 0 0 0
........................................................................................................................AAGGAATACAGGAAACGACATAGAT............................ 25 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................AAACGACATAGATGACAAGAACGTGGC.............. 27 0 2 0.50 1 1 0 0 0 0 0
.......................................................GATTTAATCCGTTTGTGCC................................................................................................... 19 0 2 0.50 1 0 0 1 0 0 0
...........................................................................................................................................ATAGATGACAAGAACGTGGC.............. 20 0 2 0.50 1 0 0 1 0 0 0
....................................................................................................................................AAACGACATAGATGACAAGA..................... 20 0 2 0.50 1 0 0 0 0 0 1
.........................................................................CTTTCCCTTCTTACGGAGGTCCC............................................................................. 23 1 2 0.50 1 0 1 0 0 0 0
....................................................ATGGATTTAATCCGTTTGTGCCTT................................................................................................. 24 0 2 0.50 1 0 0 1 0 0 0
..........................................................................TTTCCCTTCCTACGGAGGTCCCGA........................................................................... 24 0 2 0.50 1 1 0 0 0 0 0
........................................................ATTTAATCCGTTTGTGCCTTTCC.............................................................................................. 23 0 2 0.50 1 0 1 0 0 0 0
.............GTTTCCAGGGATTCGGATCACCC......................................................................................................................................... 23 0 2 0.50 1 0 0 1 0 0 0
..................................................................................................................................................ACAAGAACGTGGCAGGATC........ 19 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................GAACGTGGCAGGATCAGGAGAC. 22 0 2 0.50 1 0 1 0 0 0 0
.................CCAGGGATTCGGATCACCCTAT...................................................................................................................................... 22 0 2 0.50 1 0 0 0 1 0 0
.......GAGGCTGTTTCCAGGGATTC.................................................................................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................................ATGACAAGGACGTGGCAGGATC........ 22 1 2 0.50 1 0 1 0 0 0 0
..........................................................................................................................................CATAGATGACAAGAACGT................. 18 0 2 0.50 1 0 0 1 0 0 0
.......GAGGCTGTTTCCAGGGATTCGGATC............................................................................................................................................. 25 0 2 0.50 1 0 0 0 0 1 0
...............................................................................................................................ACAGGAAACGACATAGATGAC......................... 21 0 2 0.50 1 0 0 0 1 0 0
........................................................................................................................AAGCAATACAGGAAACGACATAGAT............................ 25 0 2 0.50 1 0 1 0 0 0 0
...............................................................................................................................................ATGACAAGAACGTGGCAGGATCAGG..... 25 0 2 0.50 1 0 1 0 0 0 0
....................................................................................................................................................AAGAACGTGGCAGGATCAGGA.... 21 0 2 0.50 1 0 1 0 0 0 0
CAGTGTGGAGGCTGTTTCCAGGG...................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0
................................................................CGTTTGTGCCTTTCCCTTCCTACGGA................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0
........................................................................................................................................GGCATAGATGACAAGAACGTGGCAGG........... 26 1 2 0.50 1 0 0 1 0 0 0
...........................................................................TTCCCTTCCTACGGAGGTCCCGAAT......................................................................... 25 0 2 0.50 1 0 1 0 0 0 0
......................................................GGATTTAATCCGTTTGTGCCT.................................................................................................. 21 0 2 0.50 1 0 1 0 0 0 0
...................................................................................................................................................CAAGAACGTGGCAGGATCAGGA.... 22 0 2 0.50 1 0 1 0 0 0 0
.......GAGGCTGTATCCAGAGAT.................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0
.............................ATCACCCAATACGTCCAACC............................................................................................................................ 20 3 20 0.15 3 0 0 0 0 3 0

Anti-sense strand reads

GTCACACCTCCGACAAAGGTCCCTAAGCCTAGTGGGATATACATGTTGGGCATACCTAAATTAGGCAAACACGGAAAGGGAAGGATGCCTCCAGGGCTTATTATAGGGCTTATTACTAAATTCGTTATGTCCTTTGCTGTATCTACTGTTCTTGCACCGTCCTAGTCCTCTGA
*******************************************************......(((((.(((..(((........))))))..)))))..................*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total V039
embryo
 M058
embryo
 V105
male body		 V106
head
...................................................AGACCCAAATTAGGCAAAC....................................................................................................... 19 2 2 0.50 1 1 0 0 0
...........................................................................................CAGGGCCTATTATAGGGC................................................................ 18 1 4 0.25 1 0 1 0 0
......................................................................................CCCCCCAGGGCTTATTAT..................................................................... 18 2 6 0.17 1 1 0 0 0
................................................................................................CTTAATATAGGGCATATT........................................................... 18 2 10 0.10 1 0 1 0 0
......................................ATACATGATGGGCATACT..................................................................................................................... 18 2 13 0.08 1 0 0 1 0
...................................................................................................................CTAAATTCATTATATCCTTTA..................................... 21 3 18 0.06 1 1 0 0 0
.......CTCCGATAAAGGTCCCTGG................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1
......................................ATACATCCTGGGCATACT..................................................................................................................... 18 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:6039063-6039235 + dan_2915 CAGTGTGGAGGCTGTTTCCAGGGATTCGGATCACCC------TATATGTACAA---CCC---GTATGGATTTAATCCG---T---TTGTGC---------CTTTCCCTTCCTACGG---AGG--------TCCCGAATAATATCCCGAATAATG---ATTTAAGCAATACAGGAAA-----------------------------------------------------------CGACATAGATGACAAGAACG----------TGGCAGGATCAGGAGAC-----------T
droBip1 scf7180000396708:2777671-2777860 - CAGTGTGGAGGCTGTTTCCAGGGTTTCGGGTCACCC------TATATGTACAA---CCC---GTATGGATTCAACCCG---T---TTATGC---------CTTTCCCTTCTTATGG---AGGCTACCCCCCGA---ACAATAACCCGAATAATG---ACTTAAGCAATACAGGAAAT-----------------------------------ACTATTGGAAA------------CGAGATTGGTGACAAGAATG----------TGGAAGGATCGGGAGAC-----------T
droKik1 scf7180000302706:1104022-1104205 - CAGTGTGCAGGCTGCTTCCAGGGATTCGGAGCTCCGATGATGCCAATCTACAG---TCTCCCCTACATGTACTCTCCC---T---ATATGCCAG------CATTCCCAGGCTATGGTGGCAACTTCCCAGGCA---------------------------ACGGCAAC---------AGCATTGGAAACCAGA-----------A------------TGGA---------------------AAGGACAACGAAG----------TCACAGGATCAGGGGACGATGGC-----T
droFic1 scf7180000454104:393809-394025 - CAGTGTGCAGGTTGCTTTCAAGGGTTCGGGGCTCCCATGATGCCCATGTACAA---TGCTCCCTTTATTTATAATCCC---T---ATATGC---------CATATCCACCCTTTGG---CAACTTTCCAGGAA---A------------CTATAACA---ACGGAAAT------------TCCGGAAATAACA-----------ATGCAATTAATAGTGAAAAGAATAATGGCAACAGCAATGCAGGGGATATAG----------TATCAGGATCAGGAGACGGTGAA-----T
droEle1 scf7180000486474:1012444-1012663 - CAGTGTGCAGGTTGTTTCCAGGGATTTGGAGCGCCCCTTATGCCTATGTACAA---TGCTCCCTACATGTACAGTCCA---T---ATGTGC---------CATATCCATCCTTCGG---CAACTTCCCTGTCA---A------------TAATAATC---ATGGAAAT---------AATAACGGAAATAATA-----------ATGCAAATAAAAATGGAAATAACAAAAGACATGAGAATGAAGACGACATCC----------TTGCTGGCTCGGGAAATGGTGGC-----T
droRho1 scf7180000779540:36840-37056 + CAGTGTGCAGGTTGTTTCCAGGGATTCGGAGCGCCTA---TGCCTATGTACAA---TGCTCCTTATATGTACAATCCG---T---ATATGC---------CATATCCACCATATGG---CAACTTCCCATTAA---A------------TAATAACA---ACGGAAAT---------AATAATGGAAATTATC-----------ATGGAAATAGCAACGGAAATAATATTGGAAATAATAATGAAGACAATATCC----------TCGCAGGATCAGGAGATGATGGG-----T
droBia1 scf7180000302402:3944038-3944257 + GAATGTGCAGGTTGCTTCCAGGGATTCGGAGCTCCCATGATGCCCATCTATAA---TTCTCCCTACATGTACAACCCA---T---TCATGC---------CCTATCCTCCGTTTGG---CAACTACCCTGGCTT---------------CAATAACA---ACGGAAAT---------AGCAATGGAAACATCT-----------TTGGAGGTGACAATGCAAAGAAAGATGACAATAACAAGGTTGATAGCATCA----------TAGCGGGATCTGGAGACGATGGT-----T
droTak1 scf7180000415310:981242-981437 - CAGTGTGCCGGTTGTTTCCAGGGCTTTGGAGCGCCCATGATGCCCATGTACAG---CTCTCCCTACATGTACAACCCA---T---TTATGG---------GATATCCACAGTTTGG---CAACTATCCACAAAT---------------GAATAATA---ATGGAAAT---------AATAACGGAAATAACA-----------ATGCAAA------------------------TACTAATGTAGATAGCAACA----------TCGCAGGCTTAGGCGACGATGGT-----T
droEug1 scf7180000409794:29008-29224 - CAATGTGCAGGTTGTTTCCAGGGCTACGGAGCGCCTATGATGCCCATGTTCAA---TGCTCCTTACATGTACAATCCT---T---ATATGC---------CATATCCAAGCTTTGG---AAATTATCCAGGCCTAAA------------TAATAATA---ATGGTAAC---------AATGACGGAAGTAGCT-----------ATGGAAATAATAATGGTAAAGTT------GATAATATTGTGGATAACACCA----------TCGCGGGATCTGGGGATGATGGT-----T
dm3 chr3R:10966887-10967075 + CAGTGTGCCGGTTGTTTCCAGGGATACGGAGCTCCC------CTCATGTATAA---TCCTCCTTGGATGTACAATCCA---TATTATGTGG---------CATATCCAGCCTTTAA---CAATATACCGGCCATA---------CAGAACAATA---ATAATGGCAACAGCGGTGAC-----------------------------------------------------------ACCAGTGTAGATAAAACCA----------TTGCAGATGATGATGACGATGGATGGACT
droSim2 3r:10257161-10257349 - CACTGTGCCGGTTGCTTCCAGGGATACGGAGCTCCC------CTCATGTATAA---TCCTCCTTGGATGTACAATCCA---TATTATGTGG---------CATATCCGCCCTTTAA---CAATGTACCGACCATA---------CAGAACAATA---ACAATGGCAACAGAGATGAC-----------------------------------------------------------ACCAGTGTAGATAAAGCCA----------TTGCAGATGAAGAGGCCGATGGATGGCAT
droSec2 scaffold_0:10979630-10979818 - CAGTGTGCCGGTTGCTTCCAGAGATACGGAGCTCCC------CTCATGTATAA---TCCTCCTTGGATGTACAATCCA---TATTATGTGG---------CATATCCACCCTTTAA---CAATGTACCGGCCATA---------CAGAACAATA---ATAATGGCAACAGAGATGAC-----------------------------------------------------------ACCAGTGTAGATAAAGCCA----------TTGCAGATGAAGAGGCCGATGGATGGCAT
droYak3 3R:15463197-15463388 - CAGTGTGCAGGCTGCTTCCAGGGATACGGAGCTCCA------CTCATGTATAA---TCCGCCTTGGATGTACAATCCC---T---ATGTGG---------CATATCCACCCTTTAA---CAATTTTCCGGCCATG---------AACAACAATA---ACTATGGAAACAAGGACGAA-----------------------------------------------------------ACCAATGTGGACACCAAT-GAAGAGACCCACGCAGGTTCAGGTGATG---GATGGATT
droEre2 scaffold_4770:10493083-10493260 + CAATGTGCAGCCTGCTTCCAGGGATACGGATCTCCA------CCCATGTACTCCAGTCCTATTTTGATGTACAATCCC---T---ACGTGG---------CGTATCCAATCATTAA---CAATTTCCCGCCCACA---------AACGACAACA---ACTATGCAGACAACGACGAC-----------------------------------------------------------ACCGATGTAGACAAGACCA----------ACGCAGGTTCAGATGACG-----------
dp5 2:20947746-20947932 + CAGTGCGCGGGCTGCTTCCTGGGCTATTCGGCTCCCTTCCAGCCCCAGTACTA---CGCTCCATATGTG---------------------CCATACAATCCATACCCACAATTTGC------------ACCCCTC---------CCCAACTGTG---GCCCTGGTGGCTGCAGCAAC------AACATCATCGATGGATCGCGAT------------TGG--------------------------AGCCCAGC-GACGATATCCCTT---------CCCGCGATGAC-----T
droPer2 scaffold_3:3697745-3697931 + CAGTGCGCGGGCTGCTTCCTGGGCTATTCGGCTCCCTTCCAGCCCCAGTACTA---CGCTCCATATGTG---------------------CCATACAATCCATACCCACAATTTGC------------ACCCCTC---------CCCAACTGTG---GCCCTGGTGGCTGCAGCAAC------AACATCATCGATGGATCGCGAT------------TGG--------------------------AGCCCAGC-GACGATATCCCTT---------CCCGCGATGAC-----T
droWil2 scf2_1100000004943:7297716-7297739 - CAATGTGCAGGCTGTTTCCAAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:7652834-7652850 + GGTTGCACCGGCTGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:3613669-3613754 + GAGTGCATGGGTTGCTTTCCAAGCTATATGCCACAGCCTGTGCTGATGC---------------------------CACAGC---CTGTGA---------TCTACCCACACTATTT---CGG--------TCCCA---------A-----------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14830:3500315-3500337 + GAATGCGTCGGCTGTTTTCAAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CAGTGTGGAGGCTGTTTCCAGGGATTCGGATCACCC------TATATGTACAA---CCC---GTATGGATTTAATCCG---T---TTGTGC---------CTTTCCCTTCCTACGG---AGG--------TCCCGAATAATATCCCGAATAATG---ATTTAAGCAATACAGGAAA-----------------------------------------------------------CGACATAGATGACAAGAACG----------TGGCAGGATCAGGAGAC-----------TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................GATGACAAGAACG----------TGGCAGGAT....................2225.0010320050
..........................................................................................................................................................................................................................................................GAACG----------TGGCAGGATCAGGA...............1923.507500020
............................................................................................................................................................................................................................................GACATAGATGACAAGAACG----------TGGCA........................2423.006110040
..................................................................................................................................................................................................................................................GATGACAAGAACG----------TGGCAGG......................2023.006020040
.................................................................................................................................................................................................................................................AGATGACAAGAACG----------TGGCA........................1922.505300020
..................................................................................................................................................................................................................................................GATGACAAGAACG----------TGGCAGGATC...................2322.505120020
..........................................................................................................................................................................................................................................................GAACG----------TGGCAGGATCAGGAGA.............2122.505200030
...............................................................................................................................................................................................................................................ATAGATGACAAGAACG----------TGGCA........................2122.004101020
...............................................................................................................................................................................................................................................ATAGATGACAAGAACG----------TGGCAGG......................2322.004200020
............................................................................................................................................................................................................................................GACATAGATGACAAGAACG----------T............................2022.004000040
.......................................................................................................................................................................................................................................................CAAGAACG----------TGGCAGGATCA..................1921.503100020
.........GGCTGTTTCCAGGGATTCGG.........................................................................................................................................................................................................................................................................2021.503300000
.....................................................................................................................................................................................................................................................GACAAGAACG----------TGGCAGGATC...................2021.503120000
..............................................................................................................................................................................AA-----------------------------------------------------------CGACATAGATGACAAGAAC........................................2121.503020010
...............................................................................................................................................................................................................................................ATAGATGACAAGAACG----------TGGCAGGATC...................2621.503100020
..................................................................................................................................................................................................................................................GATGACAAGAACG----------TGGCA........................1821.503101100
.......GAGGCTGTTTCCAGGGATTCGG.........................................................................................................................................................................................................................................................................2221.503110010
...................................................................................................................................................................GCAATACAGGAAA-----------------------------------------------------------CGACATAGAT.................................................2321.002000002
......................................................................................................................................................................................................................................................ACAAGAACG----------TGGCAGGATCAGGAGA.............2521.002200000
.......................................................................TAATCCG---T---TTGTGC---------CTTTCCC...........................................................................................................................................................................................2121.002110000
........................................................................................................................................ATAATATCCCGAATAATG---AT.......................................................................................................................................2021.002002000
............................................................................................................................................................................................................................................GACATAGATGACAAGAACG----------TGGCAGGAT....................2821.002000020
...................................................................................................................................................................GCAATACAGGAAA-----------------------------------------------------------CGACATA....................................................2021.002011000
.....................................................................................................................................................................AATACAGGAAA-----------------------------------------------------------CGACATAGAT.................................................2121.002000011
..................................................................................................................................................................................................................................................GATGACAAGAACG----------TGGCAGGATCAGGA...............2721.002000020
............................................................................................................................................................................................................................................GACATAGATGACAAGAACG----------TGGCAGG......................2621.002000020
...........................................................................................................................................................................................................................................CGACATAGATGACAAGAACG----------TGGCAG.......................2621.002100010
..............................................................................................................................................................................AA-----------------------------------------------------------CGACATAGATGACAAGAACG----------T............................2321.002000020
..............................................................................................................................................................................................................................................CATAGATGACAAGAACG----------TGGCAGGATC...................2721.002100010
.........................................................................................................................................................G---ATTTAAGCAATACAGGAAA-----------------------------------------------------------CGAC.......................................................2421.002110000
.....................................................................................................................................................................................................................................................GACAAGAACG----------TGGCAGGATCAGG................2321.002010010
....................................................................................................................................................................................................................................................TGACAAGAACG----------TGGCAGGA.....................1921.002010010
...............................................................................................................................................................................................................................................ATAGATGACAAGAACG----------TGGCAGGAT....................2521.002100010
.........GGCTGTTTCCAGGGATTCGGAT.......................................................................................................................................................................................................................................................................2221.002100010
.....................................................................................................................................................................................................................................................GACAAGAACG----------TGGCAGGA.....................1821.002011000
..............................................................................................................................................................................................................................................CATAGATGACAAGAACG----------TGGCAGGAT....................2621.002100010
...............................................................................................................................................................................................................................................ATAGATGACAAGAACG----------TGGCAG.......................2221.002110000
...............................................................................................................................................................TTAAGCAATACAGGAAA-----------------------------------------------------------CGACATA....................................................2421.002010010
.............GTTTCCAGGGATTCGGATC......................................................................................................................................................................................................................................................................1921.002200000
..............................................................................................................................................................................................................................................CATAGATGACAAGAACG----------TGGCAGG......................2421.002000020
............................................................................................................................................................................................................................................GACATAGATGACAAGAACG----------TGGC.........................2321.002010010
..........................................................................................................................................................................................................................................................GAACG----------TGGCAGGATCAGG................1821.002100010
...............................................................................................................................................................................A-----------------------------------------------------------CGACATAGATGACAAGAACG----------TGGCA........................2621.002000020
............................GATCACCC------TATATGTACAA---CCC---GT......................................................................................................................................................................................................................................2421.002010010
...........................................................................................................................................................................................................................................CGACATAGATGACAAGAACG----------T............................2121.002100010
.....................................................................................................................................................................................................................................................GACAAGAACG----------TGGCAGGATCAGGA...............2421.002100010
.........................................................................................................................................................G---ATTTAAGCAATACAGGAAA-----------------------------------------------------------CGA........................................................2321.002020000
.................................................................................................................................................................................................................................................AGATGACAAGAACG----------TGGCAGG......................2121.002100010
..............................................................................................................................................................................AA-----------------------------------------------------------CGACATAGATGACAAGAACG----------TGGCA........................2721.002100010
.............................................................................................................................................................................AAA-----------------------------------------------------------CGACATAGATGACAAGAAC........................................2221.002011000
...........................................................................................................................................................................................................................................CGACATAGATGACAAGAACG----------TGGCA........................2521.002000020
..............................................................................................................................................................................................................................................CATAGATGACAAGAACG----------TGGCAGGA.....................2520.501010000
............................................................................................................................................................................................................................................GACATAGATGACAAGAAC........................................1820.501010000
...............................CACCC------TATATGTACAA---CCC---GT......................................................................................................................................................................................................................................2120.501000010
........................................................................AATCCG---T---TTGTGC---------CTTTCCCTT.........................................................................................................................................................................................2220.501100000
................................................................ATGGATTTAATCCG---T---TTGTGC---------C.................................................................................................................................................................................................2220.501010000
...........................................................................................................................................................................................................................................................AACG----------TGGCAGGATCAGGAGAC-----------.2120.501010000
......................................................................TTAATCCG---T---TTGTGC---------CTTTCCCTTCT.......................................................................................................................................................................................2620.501010000
.........................................................................................GC---------CTTTCCCTTCCTACGG---A..............................................................................................................................................................................1920.501100000
.....................................................................................................................................................................AATACAGGAAA-----------------------------------------------------------CGACATA....................................................1820.501001000
..................................................................................................................................................................................................................................................GATGACAAGAACG----------TGGCAGGA.....................2120.501000010
..................................................................................................................................................................................................................................................GATGACAAGAACG----------TGGCAG.......................1920.501100000
...................................C------TATATGTACAA---CCC---GTATGGATT...............................................................................................................................................................................................................................2420.501100000
........................................................................................................................................ATAATATCCCGAATAATG---ATTTAAGC.................................................................................................................................2620.501010000
...............TTCCAGGGATTCGGATCACCC------T...........................................................................................................................................................................................................................................................2220.501000001
.................CCAGGGATTCGGATCACCC------TATATGTAC...................................................................................................................................................................................................................................................2820.501100000
.............GTTTCCAGGGATTCGGATCACT...................................................................................................................................................................................................................................................................2220.501100000
.......GAGGCTGTTTCCAGGGATTCGGAT.......................................................................................................................................................................................................................................................................2420.501100000
...................................................................................................................................CCCGAATAATATCCCGAATAATG---AT.......................................................................................................................................2520.501010000
..................................................................................................................................................................................................................................................GATGACAAGAACG----------TGGCAGGATCAG.................2520.501100000
.............................ATCACCC------TATATGTACAA---CCC---GTATG...................................................................................................................................................................................................................................2620.501000010
..........GCTGTTTCCAGGGATTCGG.........................................................................................................................................................................................................................................................................1920.501010000
..............................................................................................................................................................TTTAAGCAATACAGGAAA-----------------------------------------------------------CGACAT.....................................................2420.501000010
...................................................................GATTTAATCCG---T---TTGTGC---------CTT...............................................................................................................................................................................................2120.501010000
.......................................................................TAATCCG---T---TTGTGC---------CTTTCC............................................................................................................................................................................................2020.501010000
.....................................................................................................................................................................AATACAGGAAA-----------------------------------------------------------CGACATAGATGACAA............................................2620.501000010
...............................................................................................................TACGG---AGG--------TCCCGAATAATATCCC....................................................................................................................................................2420.501010000
............................................................................................................................................................................................................................................GACATAGATGACAAGAACG----------TGGCAGGA.....................2720.501100000
......................................................................................................................................GAATAATATCCCGAATAATG---ATTTAAGC.................................................................................................................................2820.501010000
....................................................................................................................................................................CAATACAGGAAA-----------------------------------------------------------CGACATA....................................................1920.501000010
..........................................................................................................................................................................AGGAAA-----------------------------------------------------------CGACATAGATGACAAGAAC........................................2520.501010000
...........................................................................................................................................................................................................................................CGACATAGATGACAAGAACG----------TGGC.........................2420.501000010
.....................................................................................................................................................................AATACAGGAAA-----------------------------------------------------------CGACATAGATGA...............................................2320.501000010
..............................................................................................................................................................................................................................................CATAGATGACAAGAACG----------TGGC.........................2120.501010000
........................................................................................................................................................................................................................................................AAGAACG----------TGGCAGGATCAGGAG..............2220.501100000
.................................................................................................................................................................................................................................................AGATGACAAGAACG----------TGGCAG.......................2020.501000010
................................................................ATGGATTTAATCCG---T---TTGTGC---------CT................................................................................................................................................................................................2320.501010000
..............................................................................................................................................................................................................................................CATAGATGACAAGAACG----------TGGCA........................2220.501000010
.................................................................................................................................................................................................................................................AGATGACAAGAACG----------TGGCAGGATC...................2420.501100000
.............................................................................................................................................................................................................................................ACATAGATGACAAGAACG----------TGGCAGGATC...................2820.501000010
.............................................................................................................................................................................AAA-----------------------------------------------------------CGACATAGATGACAAGAACG----------T............................2420.501000010
..............................................................................................................................................................................................................................................................G----------TGGCAGGATCAGGAGAC-----------T1920.501100000
...................................................AA---CCC---GTATGGATTTAATCC.........................................................................................................................................................................................................................2020.501001000
.............GTTTCCAGGGATTCGGAC.......................................................................................................................................................................................................................................................................1820.501010000
..............................................................GTATGGATTTAATCCG---T---TTGTGC---------CT................................................................................................................................................................................................2520.501010000
......................GATTCGGATCACCC------TATATGTA....................................................................................................................................................................................................................................................2220.501010000
................................................................ATGGATTTAATCCG---T---TTGTGC---------CTTTCCC...........................................................................................................................................................................................2820.501010000
........................................................................AATCCG---T---TTGTGC---------CTTTCCCTTCCTACGG---...............................................................................................................................................................................2920.501100000
................................................................................................................................................................................................................................................TAGATGACAAGAACG----------TGGC.........................1920.501000010
...........CTGTTTCCAGGGATTCGGAT.......................................................................................................................................................................................................................................................................2020.501000010
.......................ATTCGGATCACCC------TATATGTACAA---CCC---GT......................................................................................................................................................................................................................................2920.501100000
....................................................................................................CTTTCCCTTCCTACGG---AGG--------TCCCGA..............................................................................................................................................................2520.501100000
............................................................................................................................................................................GAAA-----------------------------------------------------------CGACATAGATGACAAGAACG----------T............................2520.501010000
.....................................................................................................................................................................AATACAGGAAA-----------------------------------------------------------CGACATAGAC.................................................2120.501010000
..............................TCACCC------TATATGTACAA---CCC---GTATG...................................................................................................................................................................................................................................2520.501010000
...................................................................................................................................................................................................................................................ATGACAAGAACG----------TGGCAGGAT....................2120.501010000
...............................................................................................................................................................................A-----------------------------------------------------------CGACATAGATGACAAGAACG----------TG...........................2320.501000001
..................................................................................................................................................................................................................................................GATGACAAGAACG----------TGGCAGGAC....................2220.501010000
..GTGTGGAGGCTGTTTCCAG.................................................................................................................................................................................................................................................................................1920.501000010
CAGTGTGGAGGCTGTTTCCAGGGA..............................................................................................................................................................................................................................................................................2420.501010000
.................................................................TGGATTTAATCCG---T---TTGTGC---------C.................................................................................................................................................................................................2120.501010000
...................................................................................................................................................................................................................................................ATGACAAGAACG----------TGGCAGG......................1920.501000010
.............GTTTCCAGGGATTCGGATCACCC------T...........................................................................................................................................................................................................................................................2420.501100000
.............GTTTCCAGGGATTCGGAT.......................................................................................................................................................................................................................................................................1820.501001000
.............................................................................................................................................................ATTTAAGCAATACAGGAAA-----------------------------------------------------------CGACATA....................................................2620.501001000
..........GCTGTTTCCAGGGATTCGGATCACCC------C...........................................................................................................................................................................................................................................................2720.501010000
....................................................................................................................................................ATAATG---ATTTAAGCAATACA...........................................................................................................................2020.501010000
.....................................................................................................................................................................AATACAGGAAA-----------------------------------------------------------CGACATAGATGAC..............................................2420.501010000
........................................................................................................................................................................................................................................................AAGAACG----------TGGCAGGATCAGGAGAC-----------T2520.501100000
...............................................GTACAA---CCC---GTATGGATTT..............................................................................................................................................................................................................................1920.501001000
....................................................................................................................................................................................................................................................TGACAAGAACG----------TGGCAGGATC...................2120.501010000
CAGTGTGGAGGCTGTTTCCAGGGATT............................................................................................................................................................................................................................................................................2620.501000010
.......................................................................................................................................AATAATATCCCGAATAATG---ATTTAAGC.................................................................................................................................2720.501010000
.........................................................................................................................................................G---ATTTAAGCAATACAGGAAA-----------------------------------------------------------CGACATA....................................................2720.501001000
.......................ATTCGGATCACCC------TATATGTACAA---CCC---G.......................................................................................................................................................................................................................................2820.501100000
...........................................................................................................TTCCTACGG---AGG--------TCCCGAAT............................................................................................................................................................2020.501000001
.........................................................................................................................................................................................................................................................AGAACG----------TGGCAGGATCAGGA...............2020.501100000
.....................................................................................................................................................................................................................................................GACAAGAACG----------TGGCAGGAT....................1920.501100000
.........................................................................................................................................................G---ATTTAAGCAATACAGGAAA-----------------------------------------------------------CG.........................................................2220.501001000
......................................................................................................................................................................ATACAGGAAA-----------------------------------------------------------CGACATAGA..................................................1920.501000010
.........................................................................................................................................................G---ATTTAAGCAATACAGGAAA-----------------------------------------------------------CGACAT.....................................................2620.501000010
...........................................................................................................................................................................................................................................CGACATAGATGACAAGAACG----------TGGCAGG......................2720.501100000
..............................................................................................................................................................TTTAAGCAATACAGGAAA-----------------------------------------------------------CGAC.......................................................2220.501000010
....................................................................ATTTAATCCG---T---TTGTGC---------CTTTCCCTT.........................................................................................................................................................................................2620.501100000
......................................................................................................................................................................................................................................................ACAAGAACG----------TGGCAGGATCAGGAG..............2420.501100000
.................CCAGGGATTCGGATCACCC------............................................................................................................................................................................................................................................................1920.501010000
...................................................................................................................................CCCGAATAATATCCCGAATAAT.............................................................................................................................................2220.501010000
.............................................................................................................................................................................................................................................ACATAGATGACAAGAACG----------TGGC.........................2220.501010000
.........................................................................................................................................................................................................................................................AGAACG----------TGGCAGGATCAGGAGAC-----------.2320.501000001
.........GGCTGTTTCCAGGGATTCGGAC.......................................................................................................................................................................................................................................................................2220.501010000
.....................................................................................................................................................................AATACAGGAAA-----------------------------------------------------------CGACATAGA..................................................2020.501001000
.................................................................................................................................................................................................................................................AGATGACAAGAACG----------TGGCAGGAT....................2320.501000001
.............................................ATGTACAA---CCC---GTATGGATTTAATCCG---T---.................................................................................................................................................................................................................2820.501000010
............................GATCACCC------TATATGTACAA---CCC---........................................................................................................................................................................................................................................2220.501010000
.............................................................................................................................................................................AAA-----------------------------------------------------------CGACATAGATGACAAGAACG----------TGGC.........................2720.501000010
...................................................................GATTTAATCCG---T---TTGTGC---------C.................................................................................................................................................................................................1920.501010000
...............................................................................................................................................................................................................................................ATAGATGACAAGAACG----------TGGC.........................2020.501010000
.............................................................................................................................................................................AAA-----------------------------------------------------------CGACATAGATGACAAGA..........................................2020.501000100
................................................................ATGGATTTAATCCG---T---TTGTGC---------CTT...............................................................................................................................................................................................2420.501010000
.....................................................................................................TTTCCCTTCCTACGG---AGG--------TCCCGA..............................................................................................................................................................2420.501000010
....................................................................ATTTAATCCG---T---TTGTGC---------CTTTCC............................................................................................................................................................................................2320.501100000
.............GTTTCCAGGGATTCGGATCACCC------............................................................................................................................................................................................................................................................2320.501010000
......................................................................................................................................................................................................................................................ACAAGAACG----------TGGCAGGATC...................1920.501000010
..........................................................................................................................................................................................................................................................GAACG----------TGGCAGGATCAGGAGAC-----------.2220.501100000
.................CCAGGGATTCGGATCACCC------TAT.........................................................................................................................................................................................................................................................2220.501001000
.......GAGGCTGTTTCCAGGGATTC...........................................................................................................................................................................................................................................................................2020.501000010
..............................................................................................................................................................................................................................................CATAGATGACAAGAACG----------T............................1820.501010000
.......GAGGCTGTTTCCAGGGATTCGGATC......................................................................................................................................................................................................................................................................2520.501000001
........................................................................................................................................................................ACAGGAAA-----------------------------------------------------------CGACATAGATGAC..............................................2120.501001000
.................................................................................................................................................................AAGCAATACAGGAAA-----------------------------------------------------------CGACATAGAT.................................................2520.501100000
...................................................................................................................................................................................................................................................ATGACAAGAACG----------TGGCAGGATCAGG................2520.501100000
........................................................................................................................................................................................................................................................AAGAACG----------TGGCAGGATCAGGA...............2120.501100000
CAGTGTGGAGGCTGTTTCCAGGG...............................................................................................................................................................................................................................................................................2320.501000010
............................................................................CG---T---TTGTGC---------CTTTCCCTTCCTACGG---A..............................................................................................................................................................................2620.501100000
......................................................................................................TTCCCTTCCTACGG---AGG--------TCCCGAAT............................................................................................................................................................2520.501100000
..................................................................GGATTTAATCCG---T---TTGTGC---------CT................................................................................................................................................................................................2120.501100000
.......................................................................................................................................................................................................................................................CAAGAACG----------TGGCAGGATCAGGA...............2220.501100000
droBip1
CAGTGTGGAGGCTGTTTCCAGGGTTTCGGGTCACCC------TATATGTACAA---CCC---GTATGGATTCAACCCG---T---TTATGC---------CTTTCCCTTCTTATGG---AGGCTACCCCCCGA---ACAATAACCCGAATAATG---ACTTAAGCAATACAGGAAAT-----------------------------------ACTATTGGAAA------------CGAGATTGGTGACAAGAATG----------TGGAAGGATCGGGAGAC-----------TSizeHit CountTotal NormTotal
No Reads
droKik1
CAGTGTGCAGGCTGCTTCCAGGGATTCGGAGCTCCGATGATGCCAATCTACAG---TCTCCCCTACATGTACTCTCCC---T---ATATGCCAG------CATTCCCAGGCTATGGTGGCAACTTCCCAGGCA---------------------------ACGGCAAC---------AGCATTGGAAACCAGA-----------A------------TGGA---------------------AAGGACAACGAAG----------TCACAGGATCAGGGGACGATGGC-----TSizeHit CountTotal NormTotal
No Reads
droFic1
CAGTGTGCAGGTTGCTTTCAAGGGTTCGGGGCTCCCATGATGCCCATGTACAA---TGCTCCCTTTATTTATAATCCC---T---ATATGC---------CATATCCACCCTTTGG---CAACTTTCCAGGAA---A------------CTATAACA---ACGGAAAT------------TCCGGAAATAACA-----------ATGCAATTAATAGTGAAAAGAATAATGGCAACAGCAATGCAGGGGATATAG----------TATCAGGATCAGGAGACGGTGAA-----TSizeHit CountTotal NormTotal
No Reads
droEle1
CAGTGTGCAGGTTGTTTCCAGGGATTTGGAGCGCCCCTTATGCCTATGTACAA---TGCTCCCTACATGTACAGTCCA---T---ATGTGC---------CATATCCATCCTTCGG---CAACTTCCCTGTCA---A------------TAATAATC---ATGGAAAT---------AATAACGGAAATAATA-----------ATGCAAATAAAAATGGAAATAACAAAAGACATGAGAATGAAGACGACATCC----------TTGCTGGCTCGGGAAATGGTGGC-----TSizeHit CountTotal NormTotal
No Reads
droRho1
CAGTGTGCAGGTTGTTTCCAGGGATTCGGAGCGCCTA---TGCCTATGTACAA---TGCTCCTTATATGTACAATCCG---T---ATATGC---------CATATCCACCATATGG---CAACTTCCCATTAA---A------------TAATAACA---ACGGAAAT---------AATAATGGAAATTATC-----------ATGGAAATAGCAACGGAAATAATATTGGAAATAATAATGAAGACAATATCC----------TCGCAGGATCAGGAGATGATGGG-----TSizeHit CountTotal NormTotal
No Reads
droBia1
GAATGTGCAGGTTGCTTCCAGGGATTCGGAGCTCCCATGATGCCCATCTATAA---TTCTCCCTACATGTACAACCCA---T---TCATGC---------CCTATCCTCCGTTTGG---CAACTACCCTGGCTT---------------CAATAACA---ACGGAAAT---------AGCAATGGAAACATCT-----------TTGGAGGTGACAATGCAAAGAAAGATGACAATAACAAGGTTGATAGCATCA----------TAGCGGGATCTGGAGACGATGGT-----TSizeHit CountTotal NormTotal
No Reads
droTak1
CAGTGTGCCGGTTGTTTCCAGGGCTTTGGAGCGCCCATGATGCCCATGTACAG---CTCTCCCTACATGTACAACCCA---T---TTATGG---------GATATCCACAGTTTGG---CAACTATCCACAAAT---------------GAATAATA---ATGGAAAT---------AATAACGGAAATAACA-----------ATGCAAA------------------------TACTAATGTAGATAGCAACA----------TCGCAGGCTTAGGCGACGATGGT-----TSizeHit CountTotal NormTotal
No Reads
droEug1
CAATGTGCAGGTTGTTTCCAGGGCTACGGAGCGCCTATGATGCCCATGTTCAA---TGCTCCTTACATGTACAATCCT---T---ATATGC---------CATATCCAAGCTTTGG---AAATTATCCAGGCCTAAA------------TAATAATA---ATGGTAAC---------AATGACGGAAGTAGCT-----------ATGGAAATAATAATGGTAAAGTT------GATAATATTGTGGATAACACCA----------TCGCGGGATCTGGGGATGATGGT-----TSizeHit CountTotal NormTotal
No Reads
dm3
CAGTGTGCCGGTTGTTTCCAGGGATACGGAGCTCCC------CTCATGTATAA---TCCTCCTTGGATGTACAATCCA---TATTATGTGG---------CATATCCAGCCTTTAA---CAATATACCGGCCATA---------CAGAACAATA---ATAATGGCAACAGCGGTGAC-----------------------------------------------------------ACCAGTGTAGATAAAACCA----------TTGCAGATGATGATGACGATGGATGGACTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................GATACGGAGCTCCC------CTCATGT.....................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000010000000000000000000000000000000
..............................GCTCCC------CTCATGTATAA---TC............................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TTGCAGATGATGATGACGAT.........2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................A---ATAATGGCAACAGCGGT........................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................................................................................................A----------TTGCAGATGATGATGACGAT.........2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................GATGACGATGGATGGACT1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000
....................................................................................................................................................ACAATA---ATAATGGCAACAGCGGT........................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000001000000
..........................................................................................................................................................................................................................................................................TGCAGATGATGATGACGAT.........1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
..............................GCTCCC------CTCATGTATAA---T.............................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TTTCCAGGGATACGGAGCTCC...................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TGATGACGATGGATGGACT1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................GATGATGACGATGGATGGACT2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................TGCAGATGATGATGACGATGGATGGA..2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GTGCCGGTTGTTTCCAGGGATAC...........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................A---------CAGAACAATA---ATAATGGCAA...............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................................................................................................TGATGATGACGATGGATGGAC.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................GTGTAGATAAAACCA----------TTGCAGAT.....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................AATATACCGGCCATA---------CAGAACAATA---TC.......................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................GGCCATA---------CAGAACAATA---ATAATG...................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GTTTCCAGGGATACGGAGCTCCC------CT..........................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TATTATGTGG---------CATATCCAG.........................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CATGTATAA---TCCTCCTTGG....................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................GCAGATGATGATGACGATG........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..GTGTGCCGGTTGTTTCCAGGGAT.............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TGCAGATGATGATGACGATG........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................................................................................ACCA----------TTGCAGATGATGAT...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................ATGGCAACAGCGGTGAC-----------------------------------------------------------AC........................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................................................................................................................................ACCAGTGTAGATAAAACCA----------TT...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................AACAGCGGTGAC-----------------------------------------------------------ACCAGTGT..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...TGTGCCGGTTGTTTCCAGGGAT.............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................................................................................................AGTGTAGATAAAACCA----------TTGCAGAT.....................2411.0010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGTGCCGGTTGTTTCCAGGGATT............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................ATGATGATGACGATGGATGGA..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................AGCGGTGAC-----------------------------------------------------------ACCAGTGTAGATAA............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................ATGATGACGATGGATGGACT2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................................ACCA----------TTGCAGATGATGATGACGAT.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATACGGAGCTCCC------CTCAT.......................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................CAGCGGTGAC-----------------------------------------------------------ACCAGTGTAGATAAA...........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................AACAGCGGTGAC-----------------------------------------------------------ACCAGTGTAGA...............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........GTTGTTTCCAGGGATACG..........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AGATGATGATGACGATGGATGGACT2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................AACAGCGGTGAC-----------------------------------------------------------ACCAGTGTAGAT..............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................GATGATGATGACGATGGATGGACT2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................TGCAGATGATGATGACGATGGA......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................AAAACCA----------TTGCAGATGATGATGACGAT.........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CGGTTGTTTCCAGGGATACGG.........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................CAACAGCGGTGAC-----------------------------------------------------------ACCAGTGT..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AGCCTTTAA---CAATATACCGGCC..................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................A---ATAATGGCAACAGCGGTGAC-----------------------------------------------------------A.........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................CGGTGAC-----------------------------------------------------------ACCAGTGTAGATAAAAC.........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGTGTGCCGGTTGTTTCCAGGGAT.............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GCAACAGCGGTGAC-----------------------------------------------------------ACCAGTGT..................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................TCCAGGGATACGGAGCTCCC------............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................ATACGGAGCTCCC------CTCATGT.....................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CAGTGTGCCGGTTGTTTCCAGGG...............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
............................................................................................................GCCTTTAA---CAATATACCGGCC..................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................AGCGGTGAC-----------------------------------------------------------ACCAGTGTAGA...............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................TA---ATAATGGCAACAGCGGT........................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
droSim2
CACTGTGCCGGTTGCTTCCAGGGATACGGAGCTCCC------CTCATGTATAA---TCCTCCTTGGATGTACAATCCA---TATTATGTGG---------CATATCCGCCCTTTAA---CAATGTACCGACCATA---------CAGAACAATA---ACAATGGCAACAGAGATGAC-----------------------------------------------------------ACCAGTGTAGATAAAGCCA----------TTGCAGATGAAGAGGCCGATGGATGGCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................CATGTATAA---TCCTCCTTGG....................................................................................................................................................................................................................................1912.00200200000000000000
...................AGGGATACGGAGCTCCC------CT..........................................................................................................................................................................................................................................................1911.00100100000000000000
.....................................................................................................................................TA---------CAGAACAATA---ACAATGGCAACAGAG..........................................................................................................................2711.00100100000000000000
...........................................................................................................................................................................................................................................................................GCAGATGAAGAGGCCGATGGATGGC..2511.00100010000000000000
............................................................................................................................TACCGACCATA---------CAGAACAATA---ACAAT....................................................................................................................................2611.00101000000000000000
..............................................................................................................................................................................................................................................................A----------TTGCAGATGAAGAGGCCGATGGATGGC..2811.00100010000000000000
...................................................................................................................................CATA---------CAGAACAATA---ACAATGGCAACAGA...........................................................................................................................2811.00100010000000000000
...........................................................................................................................GTACCGACCATA---------CAGAACAAT.............................................................................................................................................2111.00100100000000000000
........................TACGGAGCTCCC------CTCATGT.....................................................................................................................................................................................................................................................1911.00100010000000000000
................................................................................................................................................................................C-----------------------------------------------------------ACCAGTGTAGATAAAGCC........................................1911.00101000000000000000
................................................................................................................................................CAGAACAATA---ACAATGGCAACAGAG..........................................................................................................................2511.00100100000000000000
..............................................................................................................................................................................GAC-----------------------------------------------------------ACCAGTGTAGATAAAGCC........................................2111.00100100000000000000
......................................................................................................................................A---------CAGAACAATA---ACAATGGCAACAGAGG.........................................................................................................................2711.00100100000000000000
.....................................................................................................................................................................AACAGAGATGAC-----------------------------------------------------------ACCAGTGT..................................................2011.00100000000000100000
droSec2
CAGTGTGCCGGTTGCTTCCAGAGATACGGAGCTCCC------CTCATGTATAA---TCCTCCTTGGATGTACAATCCA---TATTATGTGG---------CATATCCACCCTTTAA---CAATGTACCGGCCATA---------CAGAACAATA---ATAATGGCAACAGAGATGAC-----------------------------------------------------------ACCAGTGTAGATAAAGCCA----------TTGCAGATGAAGAGGCCGATGGATGGCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................AGATGAAGAGGCCGATGGAT.....2012.0020020
...................................................................................................................................................................GCAACAGAGATGAC-----------------------------------------------------------ACCAGTGT..................................................2212.0020110
..................................................................................................................................................................................................................................................GTAGATAAAGCCA----------TTGCAGATGAAGA................2611.0010010
............................................................................................................................................................................ATGAC-----------------------------------------------------------ACCAGTGTAGATAAAGCC........................................2311.0010010
..............................................................................................................................................................................GAC-----------------------------------------------------------ACCAGTGTAGATAAAGCC........................................2111.0010100
..........................................................................................................................................................................................................................................................................TGCAGATGAAGAGGCCGATGGATGGCAT2811.0010010
.....................................................................................................................................................................AACAGAGATGAC-----------------------------------------------------------ACCAGTGTA.................................................2111.0010010
.....................................................................................................................................................................AACAGAGATGAC-----------------------------------------------------------ACCAGTGTAGAT..............................................2411.0010100
................TCCAGAGATACGGAGCTCCC------CTCATGT.....................................................................................................................................................................................................................................................2711.0010010
..............................................................................................................................................................................GAC-----------------------------------------------------------ACCAGTGTAGATAAAGC.........................................2011.0011000
...............................................................................................................................................................................................................................................................................ATGAAGAGGCCGATGGATG....1911.0010100
.......................ATACGGAGCTCCC------CTCATGT.....................................................................................................................................................................................................................................................2011.0011000
..........................................................................................................................................................................................................................................................................TGCAGATGAAGAGGCCGATGGATGGCA.2711.0010010
.....................................................................................................................................................................AACAGAGATGAC-----------------------------------------------------------ACCAGTGTAG................................................2211.0010100
......................GATACGGAGCTCCC------CTCATGT.....................................................................................................................................................................................................................................................2111.0010010
..............................................................................................................................................................................................................................................................A----------TTGCAGATGAAGAGGCCGATGGATGGC..2811.0010010
...............................................................................................................................................................................AC-----------------------------------------------------------ACCAGTGTAGATAAAGCC........................................2011.0010010
.................................................................................................................................................................................................................................................................................GAAGAGGCCGATGGATGGC..1911.0010010
........................................................................................................................................................................................................................................................AAAGCCA----------TTGCAGATGAAGAG...............2111.0010100
..........................................................................................................................................................................................................................................................AGCCA----------TTGCAGATGAAGAGGC.............2111.0011000
.........................................................................................GG---------CATATCCACCCTTTAA---C..............................................................................................................................................................................1911.0011000
...........................................................................................................................................................................................................................................................................GCAGATGAAGAGGCCGATGGATGGC..2511.0010100
.................................................ATAA---TCCTCCTTGGATGT................................................................................................................................................................................................................................1811.0010010
..............................................................................................................................................................................................................................................................................GATGAAGAGGCCGATGGATGG...2111.0010100
.....................................................................................................................................................................AACAGAGATGAC-----------------------------------------------------------ACCAGTGTAGA...............................................2311.0010100
............TGCTTCCAGAGATACGGA........................................................................................................................................................................................................................................................................1811.0010010
..............................................................................................................................................................................................................................................................................GATGAAGAGGCCGATGGATG....2011.0010100
......................................................................................................................................................................................................................................................ATAAAGCCA----------TTGCAGATGAAGA................2211.0010010
..............CTTCCAGAGATACGGAGC......................................................................................................................................................................................................................................................................1811.0010010
...............TTCCAGAGATACGGAGCTCCC------CTCATGT.....................................................................................................................................................................................................................................................2811.0010100
..........................................................CTCCTTGGATGTACAATCC.........................................................................................................................................................................................................................1911.0010010
......................................................................................................................................................AATA---ATAATGGCAACAGAGAT........................................................................................................................2111.0010100
.........................................................................................................................................................................................................................................................................TTGCAGATGAAGAGGCCGATGGATGG...2611.0010010
.........................................................................................................................................................................................................................................................................TTGCAGATGAAGAGGCCGATGGAT.....2411.0010010
...........................................................................................................................................................................................................................................................................GCAGATGAAGAGGCCGATGGATGGCAT2711.0010100
.............................................................................................................................................................ATAATGGCAACAGAGATGAC-----------------------------------------------------------ACCAGT....................................................2611.0010100
..............CTTCCAGAGATACGGAGCTCCC------CTCATGT.....................................................................................................................................................................................................................................................2911.0010100
..................CAGAGATACGGAGCTCCC------CTCA........................................................................................................................................................................................................................................................2211.0010010
droYak3
CAGTGTGCAGGCTGCTTCCAGGGATACGGAGCTCCA------CTCATGTATAA---TCCGCCTTGGATGTACAATCCC---T---ATGTGG---------CATATCCACCCTTTAA---CAATTTTCCGGCCATG---------AACAACAATA---ACTATGGAAACAAGGACGAA-----------------------------------------------------------ACCAATGTGGACACCAAT-GAAGAGACCCACGCAGGTTCAGGTGATG---GATGGATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................GACCCACGCAGGTTCAGGT...............1913.00303000000000
.......................ATACGGAGCTCCA------CTCATGT.....................................................................................................................................................................................................................................................2013.00302000010000
........AGGCTGCTTCCAGGGATACGGAGC......................................................................................................................................................................................................................................................................2412.00200200000000
........................TACGGAGCTCCA------CTCATGT.....................................................................................................................................................................................................................................................1912.00202000000000
.......................................................................................................................................................ATA---ACTATGGAAACAAGGAC........................................................................................................................2012.00210000010000
....................................................................................................................................................................................................................................................GGACACCAAT-GAAGAGACCCACGCAG.......................2611.00100000010000
......................................................................................................................................G---------AACAACAATA---ACTATGGAAAC..............................................................................................................................2211.00101000000000
..........GCTGCTTCCAGGGATACGGAGCTCC...................................................................................................................................................................................................................................................................2511.00100000100000
......................................................................................................................................G---------AACAACAATA---ACTATGGAAACAAGGA.........................................................................................................................2711.00101000000000
...................................................................................................................................CATG---------AACAACAATA---ACTATGG..................................................................................................................................2111.00101000000000
....................................................................GTACAATCCC---T---ATGTGG---------CATATCCACCC.......................................................................................................................................................................................2811.00101000000000
........................TACGGAGCTCCA------CTCATGTA....................................................................................................................................................................................................................................................2011.00100000010000
................................................................................................................................................................................................................................................ATGTGGACACCAAT-GAAGA..................................1911.00100000010000
......................GATACGGAGCTCCA------CTCATGTATAA---T.............................................................................................................................................................................................................................................2611.00101000000000
....................................................................................................................................................ACAATA---ACTATGGAAACAAGGACG.......................................................................................................................2411.00100100000000
....................GGGATACGGAGCTCCA------CC..........................................................................................................................................................................................................................................................1811.00110000000000
......................................................................................................................................G---------AACAACAATA---ACTATGGAAACAAGGAC........................................................................................................................2811.00100100000000
.....................................................................................................................................................................AACAAGGACGAA-----------------------------------------------------------ACCAATGT..................................................2011.00100000010000
..........GCTGCTTCCAGGGATACGGAGCTCCA------CC..........................................................................................................................................................................................................................................................2811.00100100000000
.........................................................................................................CCACCCTTTAA---CAATTTTCCGGC...................................................................................................................................................................2311.00101000000000
............TGCTTCCAGGGATACGGAGCTCCA------CT..........................................................................................................................................................................................................................................................2611.00101000000000
................................................................................................................................GGCCATG---------AACAACAATA---ACTATGGA.................................................................................................................................2511.00101000000000
..........GCTGCTTCCAGGGATACGG.........................................................................................................................................................................................................................................................................1911.00100000010000
...............................................................................................................TTTAA---CAATTTTCCGGCCAT................................................................................................................................................................2011.00101000000000
........................................................................................................................................................................................................................................................................CACGCAGGTTCAGGTGATG---........1911.00100000010000
...........................................................................................................................................................................................................................................................AAT-GAAGAGACCCACGCAGGTTCAGGTG..............2811.00100100000000
.........................................................................................................................................................A---ACTATGGAAACAAGGAC........................................................................................................................1811.00100100000000
..................................................................................................................................................CAACAATA---ACTATGGAAACAAG...........................................................................................................................2211.00100000010000
............................................CATGTATAA---TCCGCCTTGGATGT................................................................................................................................................................................................................................2311.00100000010000
.............................................ATGTATAA---TCCGCCTTGGATGT................................................................................................................................................................................................................................2211.00101000000000
......................................................................................................................................................AATA---ACTATGGAAACAAGGACGAA-----------------------------------------------------------ACC.......................................................2711.00100100000000
......................GATACGGAGCTCCA------CTCATGTA....................................................................................................................................................................................................................................................2211.00100000010000
.....TGCAGGCTGCTTCCAGGG...............................................................................................................................................................................................................................................................................1820.50101000000000
droEre2
CAATGTGCAGCCTGCTTCCAGGGATACGGATCTCCA------CCCATGTACTCCAGTCCTATTTTGATGTACAATCCC---T---ACGTGG---------CGTATCCAATCATTAA---CAATTTCCCGCCCACA---------AACGACAACA---ACTATGCAGACAACGACGAC-----------------------------------------------------------ACCGATGTAGACAAGACCA----------ACGCAGGTTCAGATGACG-----------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................CAACGACGAC-----------------------------------------------------------ACCGATGTAGACA.............................................2312.0020001100
...TGTGCAGCCTGCTTCCAGGGA..............................................................................................................................................................................................................................................................................2112.0021000010
.......................ATACGGATCTCCA------CCCATGTACTCCA...............................................................................................................................................................................................................................................2612.0020000200
.......................ATACGGATCTCCA------CCCATGTACTCC................................................................................................................................................................................................................................................2512.0022000000
.......................ATACGGATCTCCA------CCCATGT.....................................................................................................................................................................................................................................................2012.0020100010
........................TACGGATCTCCA------CCCATGT.....................................................................................................................................................................................................................................................1912.0021000010
...............................................................TTGATGTACAATCCC---T---ACGTGG---------CGTATCC...........................................................................................................................................................................................2911.0011000000
.......................ATACGGATCTCCA------CCCAT.......................................................................................................................................................................................................................................................1811.0011000000
..............................................................TTTGATGTACAATCCC---T---ACGTGG---------CGT...............................................................................................................................................................................................2611.0010000100
..................................................................................................................................................................................................................................................GTAGACAAGACCA----------ACGCAGGT.....................2111.0010000100
CAATGTGCAGCCTGCTTCCAGGG...............................................................................................................................................................................................................................................................................2311.0011000000
...........................GGATCTCCA------CCCATGTACTCCAGT.............................................................................................................................................................................................................................................2411.0011000000
......................................................................................................................................A---------AACGACAACA---ACTATGCAGAC..............................................................................................................................2211.0010000100
.........................................................................................................................................................A---ACTATGCAGACAACGACGAC-----------------------------------------------------------ACC.......................................................2411.0010100000
......................................................................ACAATCCC---T---ACGTGG---------CGT...............................................................................................................................................................................................1811.0010000100
....................................................................GTACAATCCC---T---ACGTGG---------CGT...............................................................................................................................................................................................2011.0010010000
......................GATACGGATCTCCA------CCCATGT.....................................................................................................................................................................................................................................................2111.0010001000
...................................................................TGTACAATCCC---T---ACGTGG---------CGTATCC...........................................................................................................................................................................................2511.0010000100
..................................................CTCCAGTCCTATTTTGATGTACA.............................................................................................................................................................................................................................2311.0010001000
....................................................................GTACAATCCC---T---ACGTGG---------CG................................................................................................................................................................................................1911.0010000010
.....................................................................................................................................................................GACAACGACGAC-----------------------------------------------------------ACCGATGT..................................................2011.0011000000
....................................................................GTACAATCCC---T---ACGTGG---------C.................................................................................................................................................................................................1811.0011000000
................................................................................................................................................................ATGCAGACAACGACGAC-----------------------------------------------------------ACC.......................................................2011.0010000010
.........................ACGGATCTCCA------CCCATGTACTC.................................................................................................................................................................................................................................................2211.0011000000
.........................................................................................................................................................A---ACTATGCAGACAACGACGAC-----------------------------------------------------------ACCGAT....................................................2711.0011000000
.....................................................................................................................................................................GACAACGACGAC-----------------------------------------------------------ACCGAT....................................................1811.0011000000
......................GATACGGATCTCCA------CCCATGTACTCCA...............................................................................................................................................................................................................................................2711.0011000000
.................................................ACTCCAGTCCTATTTTGATGT................................................................................................................................................................................................................................2111.0010000010
...............TTCCAGGGATACGGATCTCCA------CCCA........................................................................................................................................................................................................................................................2511.0010100000
.............................................................................................................................................................................CGAC-----------------------------------------------------------ACCGATGTAGACAAGAC.........................................2111.0010000100
.AATGTGCAGCCTGCTTCCAGGGATACG..........................................................................................................................................................................................................................................................................2711.0010000100
.......................ATACGGATCTCCA------CCCATGC.....................................................................................................................................................................................................................................................2011.0010100000
......................................................................................................................................................................ACAACGACGAC-----------------------------------------------------------ACCGATGTA.................................................2011.0010000010
................................................................................................................................................................ATGCAGACAACGACGAC-----------------------------------------------------------ACCGAT....................................................2311.0011000000
..............................................................................................................................................................CTATGCAGACAACGACGAC-----------------------------------------------------------ACC.......................................................2211.0010001000
.......................................................................CAATCCC---T---ACGTGG---------CGTATCCA..........................................................................................................................................................................................2211.0011000000
.....................................................................................................................................................................GACAACGACGAC-----------------------------------------------------------ACCGATGTAGAC..............................................2411.0010100000
..................................................................ATGTACAATCCC---T---ACGTGG---------CGTATC............................................................................................................................................................................................2511.0010100000
..............................................................................................................................................................................GAC-----------------------------------------------------------ACCGATGTAGACAAGACC........................................2111.0010000100
......................GATACGGATCTCCA------CCCATGTACTCC................................................................................................................................................................................................................................................2611.0011000000
.............GCTTCCAGGGATACGGATCTC....................................................................................................................................................................................................................................................................2111.0010000100
...............................................................................................................................................................................................................................................GATGTAGACAAGACCA----------ACGCAGG......................2311.0011000000
.......................................................................................................................................................................CAACGACGAC-----------------------------------------------------------ACCGATGTAGACAA............................................2411.0011000000
...................................................................................................................................CACA---------AACGACAACA---ACTATGCA.................................................................................................................................2211.0011000000
..................................................................ATGTACAATCCC---T---ACGTGG---------CG................................................................................................................................................................................................2111.0011000000
...............................................................................................................................................................................................................................................GATGTAGACAAGACCA----------ACGCAGGTT....................2511.0010100000
....................................................................................................................................ACA---------AACGACAACA---ACTATGC..................................................................................................................................2011.0011000000
dp5
CAGTGCGCGGGCTGCTTCCTGGGCTATTCGGCTCCCTTCCAGCCCCAGTACTA---CGCTCCATATGTG---------------------CCATACAATCCATACCCACAATTTGC------------ACCCCTC---------CCCAACTGTG---GCCCTGGTGGCTGCAGCAAC------AACATCATCGATGGATCGCGAT------------TGG--------------------------AGCCCAGC-GACGATATCCCTT---------CCCGCGATGAC-----TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................CCTGGTGGCTGCAGCAAC------AACATC.........................................................................................................2412.0020020000000
............................................................................................ATACAATCCATACCCACAATTTGC------------......................................................................................................................................................................2411.0010010000000
..........................................................................................................................................................................................................GAT------------TGG--------------------------AGCCCAGC-GACGA..................................1911.0010100000000
.......................................................................................................................................................................................AACATCATCGATGGATCGCGAT------------TGG--------------------------A...............................................2611.0010100000000
...........................................................................................................................................................................AGCAAC------AACATCATCGATG..................................................................................................1911.0010100000000
.................................................................................................................TGC------------ACCCCTC---------CCCAACTGTG---GC.......................................................................................................................................2211.0010100000000
................................................................................................................................ACCCCTC---------CCCAACTGTG---GC.......................................................................................................................................1911.0010100000000
...........................................................................................................................................................................AGCAAC------AACATCATCGATGGAT...............................................................................................2211.0010100000000
............................................................................................................................................................................GCAAC------AACATCATCGATGGATCGC............................................................................................2411.0010000100000
...................................................................................................................................................................................................GGATCGCGAT------------TGG--------------------------AGCCCAGC-.......................................2111.0010100000000
......GCGGGCTGCTTCCTGGGC..............................................................................................................................................................................................................................................................................1811.0010100000000
...........................................................................................................................................................................AGCAAC------AACATCATCGATGGATCGC............................................................................................2511.0010000100000
.......................................................................................................................................................................................................CGCGAT------------TGG--------------------------AGCCCAGC-GAC....................................2011.0010100000000
................................TCCCTTCCAGCCCCAGTACTA---C.............................................................................................................................................................................................................................................2211.0010010000000
...............................................................................................................................................................CCTGGTGGCTGCAGCAAC------...............................................................................................................1811.0010100000000
...............................................................................................................................................................CCTGGTGGCTGCAGCAAC------AACAT..........................................................................................................2311.0010100000000
.AGTGCGCGGGCTGCTTCCTGGGC..............................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
CAGTGCGCGGGCTGCTTCCTGGGCTATTCGGCTCCCTTCCAGCCCCAGTACTA---CGCTCCATATGTG---------------------CCATACAATCCATACCCACAATTTGC------------ACCCCTC---------CCCAACTGTG---GCCCTGGTGGCTGCAGCAAC------AACATCATCGATGGATCGCGAT------------TGG--------------------------AGCCCAGC-GACGATATCCCTT---------CCCGCGATGAC-----TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................CCTGGTGGCTGCAGCAAC------...............................................................................................................1813.003300000
..............................................................................................................................................................................................TCGATGGATCGCGAT------------TGG--------------------------AGCCC...........................................2313.003300000
...............................................................................................................................................................................................CGATGGATCGCGAT------------TGG--------------------------AGCCC...........................................2212.002200000
...............................................................................................................................................................................................CGATGGATCGCGAT------------TGG--------------------------AGCCCAG.........................................2412.002200000
...............................................................................................................................................................CCTGGTGGCTGCAGCAAC------AACATC.........................................................................................................2412.002200000
.......................................................................................................................................................................................................CGCGAT------------TGG--------------------------AGCCCAGC-GAC....................................2011.001010000
.........................................................................................................................................................................................CATCATCGATGGATCGCGAT------------TGG--------------------------AGCCC...........................................2811.001100000
..GTGCGCGGGCTGCTTCCTGGGC..............................................................................................................................................................................................................................................................................2211.001100000
..GTGCGCGGGCTGCTTCCTG.................................................................................................................................................................................................................................................................................1911.001100000
............................................................................................................................................................................................CATCGATGGATCGCGAT------------TGG--------------------------AGCCCAGC-.......................................2811.001100000
droWil2
CAATGTGCAGGCTGTTTCCAAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..ATGTGCAGGCTGTTTCCAA.................................................................................................................................................................................................................................................................................1911.00101000
....GTGCAGGCTGTTTCCAAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2011.00100010
droVir3
GGTTGCACCGGCTGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GAGTGCATGGGTTGCTTTCCAAGCTATATGCCACAGCCTGTGCTGATGC---------------------------CACAGC---CTGTGA---------TCTACCCACACTATTT---CGG--------TCCCA---------A-----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................TGTGCTGATGC---------------------------CACAGC---CTGT.............................................................................................................................................................................................................2112.002200000
...........TTGCTTTCCAAGCTATATGCCAC....................................................................................................................................................................................................................................................................2311.001100000
......................................TGTGCTGATGC---------------------------CACAGC---CTGTGA---------TCTAC.............................................................................................................................................................................................2811.001100000
.........................................................................................GA---------TCTACCCACACTATTT---CG.............................................................................................................................................................................2011.001100000
..................CCAAGCTATATGCCACAGC.................................................................................................................................................................................................................................................................1911.001100000
....GCATGGGTTGCTTTCCAAG...............................................................................................................................................................................................................................................................................1911.001100000
........................................TGCTGATGC---------------------------CACAGC---CTGTGA---------TCTACC............................................................................................................................................................................................2711.001100000
......................................................................................TGTGA---------TCTACCCACACTATTT---CGG--------TC..................................................................................................................................................................2611.001100000
................................................C---------------------------CACAGC---CTGTGA---------TCTACCC...........................................................................................................................................................................................2011.001100000
............TGCTTTCCAAGCTATATGCCACAGCCT...............................................................................................................................................................................................................................................................2711.001100000
........................TATATGCCACAGCCTGTGCTGATGC---------------------------..........................................................................................................................................................................................................................2511.001100000
.........................ATATGCCACAGCCTGTGCTGATGC---------------------------C.........................................................................................................................................................................................................................2511.001100000
...............TTTCCAAGCTATATGCCACA...................................................................................................................................................................................................................................................................2011.001100000
..............CTTTCCAAGCTATATGCCACAGC.................................................................................................................................................................................................................................................................2311.001100000
droGri2
GAATGCGTCGGCTGTTTTCAAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....CGTCGGCTGTTTTCAAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1811.00110

Generated: 05/18/2015 at 05:56 AM