ID:

dan_2914

 Coordinate:

scaffold_13340:5994701-5994851 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.7 -39.6 -39.6 -39.5

Flybase annnotation

exon [dana_GLEANR_18430:1]; CDS [Dana\GF17165-cds]; intron [Dana\GF17165-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AATTCGTTGTCTTCAATGCAGCTCGCGACAACAACCTGGCCCAGCTGAAGGTGAGTCTCTTAATTAGGTGGGAGGGGGTGTGGGGTGTGGGGCTAAAGAAGAAGTGTTGTTATTGTTATGTAGGAATCTCAGCTGCTCCCTCGGCCTAGCCTTGTGACTAATCGATAAGTTCTCACCAACAAAAGCACACAAAGCGCCCCCCAAACACAGACACACACACACCAGACATGGGCTCTCTCTCCCAGTCCGCG
**************************************************................((.(((.....(((((...(((.((.....((((....(((((.....((((((.(((...((..((((......))))..)))))))))))....)))))..))))..)).)))....)))))......)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 M044
female body
 V105
male body		 M058
embryo
 V055
head
 V039
embryo
.......................................................................GAGGGGGTGTAGGGTGGGG................................................................................................................................................................. 19 2 10 3.20 32 8 21 3 0 0 0
.......................................................................GAGGGGGTGTAGGGTGTGGTT............................................................................................................................................................... 21 3 5 2.80 14 8 0 6 0 0 0
.......................................................................GAGGGGGTGTAGGGTGTGGT................................................................................................................................................................ 20 2 1 2.00 2 1 0 1 0 0 0
..............AATGCAGCTCGCGACAACAACC....................................................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0
...............ATGCAGCTCGCGACAACAACCT...................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................TTGTGACTCAACGATAAGTTC............................................................................... 21 2 1 1.00 1 0 0 0 0 0 1
....................................................................TGGGAGGGGGTGTGGGGTGTGG................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................CACCTACACACCAGACATGGTC.................. 22 3 2 1.00 2 0 0 0 2 0 0
......................................................................................................................................................ATTGTGACTCAACGATAAGTTCT.............................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
...........TTCAATGCAGCTCGCGACAACAACCTG..................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................TATGTGGGGATCTCAGCTTCT.................................................................................................................. 21 3 1 1.00 1 0 0 0 0 1 0
..............AATGCATCTCGCGACAACAACC....................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................AGGGGGTGTAGGGTGGGG................................................................................................................................................................. 18 2 20 0.75 15 3 11 1 0 0 0
.....................................................................................................................................................................................AAAGCACACAGGGCGCCCACC................................................. 21 3 2 0.50 1 0 0 0 1 0 0
.................................................................AGGTGGGAGGCGGTGTGTGGTGCG.................................................................................................................................................................. 24 3 2 0.50 1 0 0 0 0 1 0
..............................................................................................................................................................TAATAGTTATGTTCTCACCA......................................................................... 20 3 9 0.33 3 0 0 0 3 0 0
...........................................................TTAATTAGGTGGGAGATGGCG........................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0
........................................................................AGGGGGTGTAGGGTGTGG................................................................................................................................................................. 18 1 3 0.33 1 0 1 0 0 0 0
........................................................................AGGGGGTGTAGGGTGTGGTT............................................................................................................................................................... 20 3 20 0.30 6 3 0 3 0 0 0
.....................................................................................................................................................CCGTGTGCCTAATGGATAAG.................................................................................. 20 3 4 0.25 1 0 0 1 0 0 0
........................................................................AGGGGGTGCGGAGTGTGGGCC.............................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 1 0
..............................................................................................................................................................TAATCGAGTAGTTCGCACCA......................................................................... 20 3 5 0.20 1 0 0 0 1 0 0
...........................................................................................ACTAAAGAAGAAGTTTTGT............................................................................................................................................. 19 2 6 0.17 1 0 0 0 1 0 0
.........................................................................................................................................................................................................CAGACACAGAAACACACACACCA........................... 23 2 6 0.17 1 0 0 0 1 0 0
...................................................................GTGGGAAAGGGTGTGGGG...................................................................................................................................................................... 18 2 20 0.15 3 0 1 2 0 0 0
..................................CATGGCCAAGCTGAAGGTGCG.................................................................................................................................................................................................... 21 3 7 0.14 1 0 1 0 0 0 0
..........................................................................................................................................................................................................AACCACAGACACACACACACC............................ 21 1 7 0.14 1 0 0 0 1 0 0
......................................................................................................................................................CGTGTGCCTAATGGATAAG.................................................................................. 19 3 15 0.13 2 2 0 0 0 0 0
..............................................................................TGCGGGGTGTGGGGGTAA........................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0
.....................................................................................................................................................................................AAAGCACAGAAGGCGCCCAC.................................................. 20 3 8 0.13 1 0 0 0 1 0 0
.....................................................................GGGAGGGGGGGTAGGGTGT................................................................................................................................................................... 19 2 8 0.13 1 0 0 0 0 1 0
........................................................................AGGGGGTGTAGGGTGGGGGG............................................................................................................................................................... 20 2 8 0.13 1 0 1 0 0 0 0
.......................................................................GAGGGGATGTGGGGTGTGC................................................................................................................................................................. 19 2 8 0.13 1 0 0 0 0 1 0
....................................................................................................................................................................................AAGAACACACAAACCGCCCCC.................................................. 21 3 9 0.11 1 0 0 0 1 0 0
................................................................TAAGTGGGAAAGGGTGTGGGG...................................................................................................................................................................... 21 3 9 0.11 1 0 0 1 0 0 0
..........................................................................................................................................................................TCTCAACAACAAAAGAACAC............................................................. 20 2 9 0.11 1 0 0 0 1 0 0
.......................................................................GAGGGGGTGTAGGGTGGGGA................................................................................................................................................................ 20 3 20 0.10 2 0 1 1 0 0 0
...................................................................................................................................................................GATAAGTCGTCACCAAAAAAA................................................................... 21 3 12 0.08 1 0 0 0 1 0 0
........................................................................AGGGGGTGTAGGGTGGGGGTC.............................................................................................................................................................. 21 3 13 0.08 1 0 0 1 0 0 0
........................................................................AGGGGGTGTAGGGTGGGGG................................................................................................................................................................ 19 2 15 0.07 1 1 0 0 0 0 0
.......................................................................GAGGGGGTGTAGGGTGTGTTG............................................................................................................................................................... 21 3 16 0.06 1 0 1 0 0 0 0
.................................................................AGGTGGGAGGGGGTGTGTCGG..................................................................................................................................................................... 21 3 16 0.06 1 0 0 0 0 1 0
................................................AGGTGAGTAGCTTAATTCG........................................................................................................................................................................................ 19 3 17 0.06 1 0 0 0 0 1 0
......................................................................................GGGGGGCTCAAGAAGAA.................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 1 0
........................................................................................................................................................................................GCACACACAGGGACCCCCAA............................................... 20 3 20 0.05 1 0 0 0 0 1 0
..............................................................................................AGAGATGAAGTGTTGGTAT.......................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0
.......................................................................GAGGGGGTGTAGGGTGGGGC................................................................................................................................................................ 20 3 20 0.05 1 0 0 1 0 0 0
......................................................................................................................................................................................AAGCACACAAAGGGACCCAC................................................. 20 3 20 0.05 1 0 0 0 1 0 0
.......................................................................GAGGGGGTGTAGGGTGGGGGT............................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
........................................................................AGGGGGTGCAGGGTGTGGT................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0
..............................................................................................................................................................GAATCGATTAGTTCTCAGC.......................................................................... 19 3 20 0.05 1 0 0 0 0 1 0
...............................................................TTAAGTGGGAGAGGATGTGGG....................................................................................................................................................................... 21 3 20 0.05 1 0 0 1 0 0 0
....................................................................................................................................................................................AAAAGCACATAAGGCGCCT.................................................... 19 3 20 0.05 1 0 0 0 0 1 0
.........................................................................GGGGGTGTAGGGTGGGGGG............................................................................................................................................................... 19 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TTAAGCAACAGAAGTTACGTCGAGCGCTGTTGTTGGACCGGGTCGACTTCCACTCAGAGAATTAATCCACCCTCCCCCACACCCCACACCCCGATTTCTTCTTCACAACAATAACAATACATCCTTAGAGTCGACGAGGGAGCCGGATCGGAACACTGATTAGCTATTCAAGAGTGGTTGTTTTCGTGTGTTTCGCGGGGGGTTTGTGTCTGTGTGTGTGTGGTCTGTACCCGAGAGAGAGGGTCAGGCGC
**************************************************................((.(((.....(((((...(((.((.....((((....(((((.....((((((.(((...((..((((......))))..)))))))))))....)))))..))))..)).)))....)))))......)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 V106
head
 M058
embryo
 V055
head
 M044
female body
........................................................................................................................................................CCACTGAGTTGCTATTCAAGA.............................................................................. 21 3 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................GGGGGTTTGTGTCTGTGTGTGTGTGG............................ 26 0 1 1.00 1 0 1 0 0 0
.....................GAGCGCTGTTGTCGAACC.................................................................................................................................................................................................................... 18 2 5 0.40 2 0 0 0 1 1
......................................................................................................CCACCACAATAACAATACAACC............................................................................................................................... 22 3 5 0.20 1 0 0 1 0 0
..........................................................................................CCGTTTTCTTCTTTACACCA............................................................................................................................................. 20 3 20 0.05 1 0 0 1 0 0
.........................................................................................................................................................................................................GTTTGTGTCTGTGTGTGTGG.............................. 20 1 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:5994651-5994901 - dan_2914 AATTCGTT---GTCTTCAATGCAGCTCGCGACAACAACCTGGCCCAGCTGAAGGTGAGTCTCTT--------------------------------------------------------------------------------A---AT--------------------TAGGTGGGAGGGGGTGT-GGGGTGTG------GGG--CT-----------------------A--------------------------------AAG-------AAGAA------------------GTGTTGTTA-TTGTTATGTAGGAATC------TCAGCTGCTCCC-----TCGG-------------------------------------CCTAGCCTTGTGACTAATCGATAA-GTTCTCACCAA----C-AAA--AG------CACACA---AAGCGCCCCCCAAACACAGACACA----CACACACCAGACATGGGCTCTCT------------------CTCCCAGTCCGCG------
droBip1 scf7180000396708:2813242-2813478 + AATTCGTT---GTTTTTAATGCTGCTCGCGATAACAACCTGGCCCAGCTGAAGGTGAGTTACC---------------------------------------------ATTTGC--------------AGG-------------TGGAACTG-----------T---CGGTGGGTGG-------------------------------------------------------------------------------------------GTCAAGCCAGAAA------------------TGTTATTA-TTGTTATGTAGGAATC------TCAGCTGCTG-----------C------TGCTGGTGCTGCTACT---GCTG-----GGCTTAACCTTGTGACTAATCAATAAAGTTCTCACAACC--AC-CAA--TGCAGA--AGCCC---------------------------C--CAGACACA-----CTCA--CGCTCT----------------CCC--------------CGCG
droKik1 scf7180000302706:1147745-1147988 + AATTCATTGCTGTTTTCAACGCTGCGCGGGACAATAACTTGCCCCAATTGAAGGTGAGATTTTT--------------------------------------------------------------------------------G---------------------------CCTGG-------------GTCTCG------------------------------------------------------------------------TTCGAATTGGAAT--------------------TTGTTG-TTGCTGTTTAGAAATC------TCAGCTGCTGT-----------------TGCTGA------------GACAGTGT-TTTTTTAGCCTTGTGACTAATCAATAAAATTCTCTCAG-CACAC-AC----A--CA--CACAC---------------------------A--CACGCA-A-------CAAGCTCTCTCGCCGTCTCCCTCTCTCCCCGCTAAGCCGTACACGCG
droFic1 scf7180000454104:434497-434753 + AATTCATT---GTTTTCAACGCTGCGAGGGACAACAATTTGGCGCAATTAAAGGTGAGTTTCGG----------------------------------------------------------------------------------GAATTT--------------------------------------------TCG-----A--CT-----------------------TCACCTGCAC--C-GG----G----------GCT--GTCCAATTGGAAAGTTGCG-----AGATTCTTATTGGGA-TTGCTGT-TGGAAACC------TCAGCTGCTCGGCAGACTCGAC---------------------------AGTTTGTTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-AC----A--CA--CGCAC---------------------------G--CACACACA-------CAAGCGCTCT------------------CCGCTAAGCCGTACACGCG
droEle1 scf7180000486474:1055460-1055716 + AATTCATT---GTTTTCAACGCAGCGAGGGACAATAATTTGGCGCAATTGAAGGTGAGTTTCG----------------------------------------------------------------------------TTT-GGCGAATTGG--------------------------------------------C------A--CT-----------------------CCACCTGCAC----TG----G----------TCT--GTCCAATTGGAAAGTTGCG-----ATATTCTTATTTTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAACAAACTCGGC---------------------------AGT---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-TG----A--CA--AGCAC---------------------------T--CACACACA-------CAAGCGCTCT------------------CTGCTAAGCCGAACACGCG
droRho1 scf7180000767720:809-1063 - AATTCATT---GTTTTCAACGCAGCGAGGGACAACAATTTGGCGCAATTAAAGGTGAGTTTCG----------------------------------------------------------------------------TTT-CGGGAATTA--------------------------------------------AC------A--CT-----------------------CCACCTACAC----TT----G----------GCT--GTCCAATTGGAAAGTTGCG-----ATATTCTTATTTTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAACAAACTCGGT---------------------------AGT---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-TC----A--CA--CACAT---------------------------G----CACACA-------CAAGCGCTCT------------------CTACTAAGCCGAACACGCG
droBia1 scf7180000302402:3902323-3902620 - AATTCATC---GTTTTCAACGCGGCGAGGGACAACAATTTGGCGCAATTGAAGGTGAGTTGGGGGCTT----------------------------------------------------------------C---CAGTT---GCGGG----G-----GCTCTG------------------------GAA--CGGCAGTTGGG--GT-----------------------TCACCTGCAC----T-----G----------GCA--GTCCAATTGGAAAGTTGCTTTCTTAGGTTCTTATTGCGA-TTGCCGC-TGGAAATCTCTGTCTCAGCTGCTCAACAGACTGGAC---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--ACCTCA--CA--CACACGCGC----------T---GCGGCAC------GCACACACTCG-------CAGGC------------------------AGCTTAGCCGTGCCCGCG
droTak1 scf7180000415310:1024010-1024273 + AATTCATT---GTTTTTAACGCGGCGAGGGACAACAATTTGGCGCAATTGAAGGTGAGTTTCGG------------------------------------------------GA--------------ATT-------------GGGAGCTGGT-----ATTTTG------------------------GAATA------TTGGA--TT-----------------------CCACCTGCAC----TTGTCTG----------TCT--GTCCAATTGGAAAGTTGCG-----AGATTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAATAAACTCGGC---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--GC-AC----A--CA--CACTC----TCCCGCCAC--------CACCACA----CACACA-------CC---------------------------------------------
droEug1 scf7180000409794:74187-74478 + AATTCATT---GTTTTCAACGCAGCGAGGGATAACAATTTGGCGCAATTGAAGGTGAGTTTTGAG----------------------------------------------AGA--------------ATTTCTGACATTTG-GGGGAATTGGG-----AA--------------------------------TGGAGGA-------TT-----------------------TCACCTGCAG----TT----G----------GTT--GGCCAATTGGAAAGTTGCG-----AGATTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAATAAACTCGGC---------------------------AGT---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-AC----G--CA--CACAC----TCTTGCTAT--------AAGCACTCACACACACA-------CTAGCGCTCT------------------CTGCTAAGCCGTA------
dm3 chr3R:10920343-10920638 - AATTCATT---GTTTTCAACGCAGCGAGGGACAACAATTTGGCGCAGTTGAAGGTGAGTTTTGAACATA-------------------------------------TCGTACGC--------------ATT-------------GCGAACTGGG-----GT--------------------------------TCAACAA-------TT-----------------------TCTCCTGCACACC-TG----G----------GCC--GTCCAATTGGAAAGTTGCT-----AGATTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAGTAAACTCGGC---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-AC----A--CA--CACTC----GCGCACTATCGCGGCACAC----GCACACACACA-------CAAGCTCTCT------------------CCGCTAAGCCGTA------
droSim2 3r:10293351-10293652 + dsi_23990 AATTCATT---GTTTTCAACGCAGCAAGGGACAACAATTTGGCGCAATTGAAGGTAAGTTTTGAACATA-------------------------------------CCGTAAGC--------------ATT-------------GCGAACTGGG-----AT--------------------------------TCGGCAA-------TT-----------------------TCTCCTGCACACC-TG----G----------TCC--GTCCAATTGGAAAGTTGCG-----AGATTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAGTAAACTCGGC---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-AC----A--CA--CACTC----GCGCACTATCGCGGCACACGCACA----CACACAC-ACACACAAGCACTCT------------------CCGCTAAGCCGTA------
droSec2 scaffold_0:11015232-11015533 + AATTCATT---GTTTTCAACGCAGCAAGGGACAACAATTTGGCGCAATTGAAGGTAAGTTTTGAACATA-------------------------------------CCGTAAGC--------------ATT-------------GCGAACTGGG-----AT--------------------------------TCGGCAA-------TT-----------------------TCTCCTGCACACC-TG----G----------TTC--GTCCAATTGGAAAGTTGCG-----AGATTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAGTAAACTCGGC---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-AC----A--CA--CACACTC--GCGCACTATCGCGGCACACGCGCGCACACACACA-------CAAGCACTCT------------------CCGCTAAGCCGTA------
droYak3 3R:15500627-15500957 + AATTCATT---GTTTTCAACGCAGCGAGGGACAACAATTTGGCGCAATTAAAGGTGAGTTTTGAACAAA-------------------------------------TCGTCTGCAGCGCAACCTGGGAATT-------------GGGAATTGGG-----AT--------------------------------TTGGCAA-------TTTCT---CCATCCAATTGGCCATTTCTTCGGCACAGC-TG----G----------GCC--ATCCAATTGGAAAGTTGCG-----AAGTTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCGGTTAACTCGGC---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--GC-AC----A--CA--CACACACGCACACACTATCGCGGCACAC----G--CACACACA-------C-AGCGCTCT------------------CCGCTAAGCCGTA------
droEre2 scaffold_4770:10455421-10455732 - AATTCATT---GTCTTCAACGCAGCGAGGGACAATAATTTGGCGCAATTAAAGGTGAGTTTTGAACACA-------------------------------------TCGTCTGT--------------ATT-------------GCAAGTTGGG-----AT--------------------------------TCGGCCA-------TTTCT---CCTTCCAATTGGCCATTTCTCCTGCACACC-TG----G----------GCC--GTCCAATTGGAAAGTTGCG-----AAGTTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAGTAAACTCGGT---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-AC----A--CA--CAC------GCACACTGTCGCAGCGCAC----G--CACACACA-------CAAGCGCTCT------------------CCGCTAAGCCGTA------
dp5 2:20901654-20901940 - AATTCATT---GTTTTTAATGCTGCCCGCGATAATAATCTGCCCCAATTGAAGGTGAGTTCAT-----ATGTGTTCATAGAAAAACGCCCCTCTCTCTCTCTCACGCTGTGTGCAGTGC-----------------------------------------------TTGATAAGTGGGTGGAAATGCTGGGCTTCG------AGGCAGCTCTACAGCTTCCAATTCT----------TGCAGCCAGC-----AGCAGTAATATT-AAC-------AACAAA-----------------TTATT-----TTATTGTGTGGAAATC------TCAGCTG-------------GC---------------------------AGA---GT-GTTAGCCTTGTGACTAATCAATAAAGTTCTCACCAA-----GT-------------------------------------------------CACACA-------TAATTCCTCT------------------C------------------
droPer2 scaffold_3:3651922-3652206 - AATTCATT---GTTTTTAATGCTGCCCGCGATAATAATCTGCCCCAATTGAAGGTGAGTTCAT-----ATGCGTTCATAGAAAAACGCCCCTCTC--TCTCTCACGCTGTGTGCAGTGC-----------------------------------------------TTGATAAGTGGGTGGAAATGCTGGGCTTCG------AGGCAGCTCTACAGCTTCCAATTCT----------TGCAGCCAGC-----AGCAGTAATATT-AAC-------AACAAA-----------------TTATT-----TTATTGTGTGGAAATC------TCAGCTG-------------GC---------------------------AGA---GT-GTTAGCCTTGTGACTAATCAATAAAGTTCTCACCAA-----GT-------------------------------------------------CACACA-------TAATTCCTCT------------------C------------------
droWil2 scf2_1100000004902:8819706-8819766 - G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATC------TCAGCTGC----------------------------------------------------TAGCCTTGTGACTAATCAATAAAATTCACACACA-------------------CACAT---------------------------G------CACA-------CAAA-------------------------------------------
droVir3 scaffold_13047:18860447-18860693 + dvi_17589 AATTCATC---GTATTCAATGCTGCACGCGATAATAACCTGCCCCTATTGAAGGTGAGTACCT-----ACC----------------------------------------TGC--------------TCT-G---CAATTGCTA---AT---TCTGCCCCTGCTGCTGATGCGTGGGCGGCTG-------------------------------------------------------------------------------------------------CCTG-------CGACTGCGACTGCGACTTGCAAG-TAAAAATC------ACAGCA-------CAACTCAGCTGCTGCTGCTGCTGCT---------GCAGT---GCTGCCAGCCTTGTGACTAATCAATAAAATTCT-AC---------ACACAAA------CACAC------------------CAC------A--CACACACA-------CATAC------------------------------------------
droMoj3 scaffold_6540:14820200-14820450 - dmo_1941 AATTCATC---ATATTCAATGCTGCACGCGATGATAACCTGCCCCTATTGAAGGTGAGTACCT-----GCGCT-----------------------------------------------------------G---CAATTGCCA--AA----G-----GCTGTCGCAGATGCGTGG-----------------------------------------------------------------------------------------------------------GCG-----ACAACCTAACTGCAACTTGCAAG-CAAAAATC------ATAGCG-------CAACTCAGCTGCTGGTGCTGTTGCTGTTGATGTTGCAGT---GCTGCCAGCCTTGTGACTAATCAATAAAATTCT-ACACAC--AC-------C------CATAC--------ACT--CGC-----AAACATA----CACATA-------C-------------------------------------ATACGCGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AATTCGTT---GTCTTCAATGCAGCTCGCGACAACAACCTGGCCCAGCTGAAGGTGAGTCTCTT--------------------------------------------------------------------------------A---AT--------------------TAGGTGGGAGGGGGTGT-GGGGTGTG------GGG--CT-----------------------A--------------------------------AAG-------AAGAA------------------GTGTTGTTA-TTGTTATGTAGGAATC------TCAGCTGCTCCC-----TCGG-------------------------------------CCTAGCCTTGTGACTAATCGATAA-GTTCTCACCAA----C-AAA--AG------CACACA---AAGCGCCCCCCAAACACAGACACA----CACACACCAGACATGGGCTCTCT------------------CTCCCAGTCCGCG------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................AATGCAGCTCGCGACAACAACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000002
..................ATGCAGCTCGCGACAACAACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..............................................................................................................................................................................TGGGAGGGGGTGT-GGGGTGTG------G.................................................................................................................................................................................................................................................................................................................................................2211.001000001
..............TTCAATGCAGCTCGCGACAACAACCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droBip1
AATTCGTT---GTTTTTAATGCTGCTCGCGATAACAACCTGGCCCAGCTGAAGGTGAGTTACC---------------------------------------------ATTTGC--------------AGG-------------TGGAACTG-----------T---CGGTGGGTGG-------------------------------------------------------------------------------------------GTCAAGCCAGAAA------------------TGTTATTA-TTGTTATGTAGGAATC------TCAGCTGCTG-----------C------TGCTGGTGCTGCTACT---GCTG-----GGCTTAACCTTGTGACTAATCAATAAAGTTCTCACAACC--AC-CAA--TGCAGA--AGCCC---------------------------C--CAGACACA-----CTCA--CGCTCT----------------CCC--------------CGCGSizeHit CountTotal NormTotal
No Reads
droKik1
AATTCATTGCTGTTTTCAACGCTGCGCGGGACAATAACTTGCCCCAATTGAAGGTGAGATTTTT--------------------------------------------------------------------------------G---------------------------CCTGG-------------GTCTCG------------------------------------------------------------------------TTCGAATTGGAAT--------------------TTGTTG-TTGCTGTTTAGAAATC------TCAGCTGCTGT-----------------TGCTGA------------GACAGTGT-TTTTTTAGCCTTGTGACTAATCAATAAAATTCTCTCAG-CACAC-AC----A--CA--CACAC---------------------------A--CACGCA-A-------CAAGCTCTCTCGCCGTCTCCCTCTCTCCCCGCTAAGCCGTACACGCGSizeHit CountTotal NormTotal
No Reads
droFic1
AATTCATT---GTTTTCAACGCTGCGAGGGACAACAATTTGGCGCAATTAAAGGTGAGTTTCGG----------------------------------------------------------------------------------GAATTT--------------------------------------------TCG-----A--CT-----------------------TCACCTGCAC--C-GG----G----------GCT--GTCCAATTGGAAAGTTGCG-----AGATTCTTATTGGGA-TTGCTGT-TGGAAACC------TCAGCTGCTCGGCAGACTCGAC---------------------------AGTTTGTTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-AC----A--CA--CGCAC---------------------------G--CACACACA-------CAAGCGCTCT------------------CCGCTAAGCCGTACACGCGSizeHit CountTotal NormTotal
No Reads
droEle1
AATTCATT---GTTTTCAACGCAGCGAGGGACAATAATTTGGCGCAATTGAAGGTGAGTTTCG----------------------------------------------------------------------------TTT-GGCGAATTGG--------------------------------------------C------A--CT-----------------------CCACCTGCAC----TG----G----------TCT--GTCCAATTGGAAAGTTGCG-----ATATTCTTATTTTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAACAAACTCGGC---------------------------AGT---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-TG----A--CA--AGCAC---------------------------T--CACACACA-------CAAGCGCTCT------------------CTGCTAAGCCGAACACGCGSizeHit CountTotal NormTotal
No Reads
droRho1
AATTCATT---GTTTTCAACGCAGCGAGGGACAACAATTTGGCGCAATTAAAGGTGAGTTTCG----------------------------------------------------------------------------TTT-CGGGAATTA--------------------------------------------AC------A--CT-----------------------CCACCTACAC----TT----G----------GCT--GTCCAATTGGAAAGTTGCG-----ATATTCTTATTTTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAACAAACTCGGT---------------------------AGT---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-TC----A--CA--CACAT---------------------------G----CACACA-------CAAGCGCTCT------------------CTACTAAGCCGAACACGCGSizeHit CountTotal NormTotal
No Reads
droBia1
AATTCATC---GTTTTCAACGCGGCGAGGGACAACAATTTGGCGCAATTGAAGGTGAGTTGGGGGCTT----------------------------------------------------------------C---CAGTT---GCGGG----G-----GCTCTG------------------------GAA--CGGCAGTTGGG--GT-----------------------TCACCTGCAC----T-----G----------GCA--GTCCAATTGGAAAGTTGCTTTCTTAGGTTCTTATTGCGA-TTGCCGC-TGGAAATCTCTGTCTCAGCTGCTCAACAGACTGGAC---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--ACCTCA--CA--CACACGCGC----------T---GCGGCAC------GCACACACTCG-------CAGGC------------------------AGCTTAGCCGTGCCCGCGSizeHit CountTotal NormTotal
No Reads
droTak1
AATTCATT---GTTTTTAACGCGGCGAGGGACAACAATTTGGCGCAATTGAAGGTGAGTTTCGG------------------------------------------------GA--------------ATT-------------GGGAGCTGGT-----ATTTTG------------------------GAATA------TTGGA--TT-----------------------CCACCTGCAC----TTGTCTG----------TCT--GTCCAATTGGAAAGTTGCG-----AGATTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAATAAACTCGGC---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--GC-AC----A--CA--CACTC----TCCCGCCAC--------CACCACA----CACACA-------CC---------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AATTCATT---GTTTTCAACGCAGCGAGGGATAACAATTTGGCGCAATTGAAGGTGAGTTTTGAG----------------------------------------------AGA--------------ATTTCTGACATTTG-GGGGAATTGGG-----AA--------------------------------TGGAGGA-------TT-----------------------TCACCTGCAG----TT----G----------GTT--GGCCAATTGGAAAGTTGCG-----AGATTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAATAAACTCGGC---------------------------AGT---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-AC----G--CA--CACAC----TCTTGCTAT--------AAGCACTCACACACACA-------CTAGCGCTCT------------------CTGCTAAGCCGTA------SizeHit CountTotal NormTotal
No Reads
dm3
AATTCATT---GTTTTCAACGCAGCGAGGGACAACAATTTGGCGCAGTTGAAGGTGAGTTTTGAACATA-------------------------------------TCGTACGC--------------ATT-------------GCGAACTGGG-----GT--------------------------------TCAACAA-------TT-----------------------TCTCCTGCACACC-TG----G----------GCC--GTCCAATTGGAAAGTTGCT-----AGATTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAGTAAACTCGGC---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-AC----A--CA--CACTC----GCGCACTATCGCGGCACAC----GCACACACACA-------CAAGCTCTCT------------------CCGCTAAGCCGTA------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................TGGCGCAGTTGAAGGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.00100000000000000000000000000000000000000000000000000000000005320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AACGCAGCGAGGGACAACAATTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CAACAATTTGGCGCAGTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATA-------------------------------------TCGTACGC--------------ATT-------------GCGAACT.....................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TTGAAGGTGAGTTTTGAACATA-------------------------------------TCGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AACGCAGCGAGGGACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................ACC-TG----G----------GCC--GTCCAATTG.......................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTC----GCGCACTATCGCGGC.........................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AACGCAGCGAGGGACAACAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................CGAGGGACAACAATTTGGCGCAGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
....CATT---GTTTTCAACGCAGCGAGGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CCTGCACACC-TG----G----------GCC--GTCC............................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACTATCGCGGCACAC----GCA..............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ATTCTTATTGTGA-TTGTTGT-................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................ATTTGGCGCAGTTGAAGGTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AACAATTTGGCGCAGTTGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--CACTC----GCGCACTATCGCGGCA........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTCGCTC--AC-AC----A--CA--CA...............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--CACTC----GCGCACTATCGCGGCC........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................ATTTGGCGCAGTTGAAGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................CAACAATTTGGCGCAGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................ATTTGGCGCAGTTGAAGGTGAGTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TTCAACGCAGCGAGGGACAACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......................AGCGAGGGACAACAATTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CAACAATTTGGCGCAGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GGGACAACAATTTGGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATT---GTTTTCAACGCAGCGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............TTCAACGCAGCGAGGGACAACAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TTCAACGCAGCGAGGGACAACAATTTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GACAACAATTTGGCGCAGTTGAAGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TTTCAACGCAGCGAGGGACAACAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................ATTTGGCGCAGTTGAAGGTGAGTTTTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AGGGACAACAATTTGGCGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AACGCAGCGAGGGACAACAATTTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................CAATTTGGCGCAGTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..TTCATT---GTTTTCAACGCAGCGAGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TGGCGCAGTTGAAGGTGAGTTTTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-------CAAGCTCTCT------------------CCGCTAAGCCG........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.................AACGCAGCGAGGGACAACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AGCGAGGGACAACAATTTGGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TT-----------------------TCTCCTGCACACC-TG----G----------GCC--................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AACGCAGCGAGGGACAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TTTGGCGCAGTTGAAGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ACGCAGCGAGGGACAACAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC----GCGCACTATCGCGGC.........................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TTGGCGCAGTTGAAGGTGAGTTTTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AGGGACAACAATTTGGCGCAGTTGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................ACC-TG----G----------GCC--GTCCAATTGGAAAG..................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....CATT---GTTTTCAACGCAGCGAGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................AGGTGAGTTTTGAACATA-------------------------------------TCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....CATT---GTTTTCAACGCAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................ATTTGGCGCAGTTGAAGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droSim2
AATTCATT---GTTTTCAACGCAGCAAGGGACAACAATTTGGCGCAATTGAAGGTAAGTTTTGAACATA-------------------------------------CCGTAAGC--------------ATT-------------GCGAACTGGG-----AT--------------------------------TCGGCAA-------TT-----------------------TCTCCTGCACACC-TG----G----------TCC--GTCCAATTGGAAAGTTGCG-----AGATTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAGTAAACTCGGC---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-AC----A--CA--CACTC----GCGCACTATCGCGGCACACGCACA----CACACAC-ACACACAAGCACTCT------------------CCGCTAAGCCGTA------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................TATTGTGA-TTGTTGT-TAG.............................................................................................................................................................................................................................1811.00100001000000000000
..........................AGGGACAACAATTTGGCGCAATTGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
......................................................................................................................................................................................................................................................................................................ATTCTTATTGTGA-TTGTTGT-T...............................................................................................................................................................................................................................2111.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................TGTTGT-TAGAAATC------TCAGCT............................................................................................................................................................................................................2011.00100100000000000000
......................................................................................................................................................................................................AA-------TT-----------------------TCTCCTGCACACC-TG----G----------TCC--................................................................................................................................................................................................................................................................................2311.00110000000000000000
droSec2
AATTCATT---GTTTTCAACGCAGCAAGGGACAACAATTTGGCGCAATTGAAGGTAAGTTTTGAACATA-------------------------------------CCGTAAGC--------------ATT-------------GCGAACTGGG-----AT--------------------------------TCGGCAA-------TT-----------------------TCTCCTGCACACC-TG----G----------TTC--GTCCAATTGGAAAGTTGCG-----AGATTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAGTAAACTCGGC---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-AC----A--CA--CACACTC--GCGCACTATCGCGGCACACGCGCGCACACACACA-------CAAGCACTCT------------------CCGCTAAGCCGTA------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................AGCAAGGGACAACAATTTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.......................................................................................................................................................................................................A-------TT-----------------------TCTCCTGCACACC-TG----G----------TTC--GTC.............................................................................................................................................................................................................................................................................2511.0010010
droYak3
AATTCATT---GTTTTCAACGCAGCGAGGGACAACAATTTGGCGCAATTAAAGGTGAGTTTTGAACAAA-------------------------------------TCGTCTGCAGCGCAACCTGGGAATT-------------GGGAATTGGG-----AT--------------------------------TTGGCAA-------TTTCT---CCATCCAATTGGCCATTTCTTCGGCACAGC-TG----G----------GCC--ATCCAATTGGAAAGTTGCG-----AAGTTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCGGTTAACTCGGC---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--GC-AC----A--CA--CACACACGCACACACTATCGCGGCACAC----G--CACACACA-------C-AGCGCTCT------------------CCGCTAAGCCGTA------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................GAGGGACAACAATTTGGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201000010000
.............TTTCAACGCAGCGAGGGACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00210000010000
.............................................................TGAACAAA-------------------------------------TCGTCTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000
.................................ACAATTTGGCGCAATTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
................CAACGCAGCGAGGGACAACAATTTGGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.......................................TGGCGCAATTAAAGGTGAGTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
................CAACGCAGCGAGGGACAACAATTTGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
............................................................................................................................................................................................................................................................................................................ATTGTGA-TTGTTGT-TAGA............................................................................................................................................................................................................................1811.00101000000000
droEre2
AATTCATT---GTCTTCAACGCAGCGAGGGACAATAATTTGGCGCAATTAAAGGTGAGTTTTGAACACA-------------------------------------TCGTCTGT--------------ATT-------------GCAAGTTGGG-----AT--------------------------------TCGGCCA-------TTTCT---CCTTCCAATTGGCCATTTCTCCTGCACACC-TG----G----------GCC--GTCCAATTGGAAAGTTGCG-----AAGTTCTTATTGTGA-TTGTTGT-TAGAAATC------TCAGCTGCTCAGTAAACTCGGT---------------------------AGC---TTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTC--AC-AC----A--CA--CAC------GCACACTGTCGCAGCGCAC----G--CACACACA-------CAAGCGCTCT------------------CCGCTAAGCCGTA------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................ATTTGGCGCAATTAAAGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
................CAACGCAGCGAGGGACAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...........GTCTTCAACGCAGCGAGGGACAATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
dp5
AATTCATT---GTTTTTAATGCTGCCCGCGATAATAATCTGCCCCAATTGAAGGTGAGTTCAT-----ATGTGTTCATAGAAAAACGCCCCTCTCTCTCTCTCACGCTGTGTGCAGTGC-----------------------------------------------TTGATAAGTGGGTGGAAATGCTGGGCTTCG------AGGCAGCTCTACAGCTTCCAATTCT----------TGCAGCCAGC-----AGCAGTAATATT-AAC-------AACAAA-----------------TTATT-----TTATTGTGTGGAAATC------TCAGCTG-------------GC---------------------------AGA---GT-GTTAGCCTTGTGACTAATCAATAAAGTTCTCACCAA-----GT-------------------------------------------------CACACA-------TAATTCCTCT------------------C------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................CTTCG------AGGCAGCTCTACAGCTA.................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.ATTCATT---GTTTTTAATGCTGCCCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.........................................................................................................................................................................................................................................................................................................................GTGTGGAAATC------TCAGCTG-------------GC---------------------------AGA---GT-........................................................................................................................................................2511.0010000000001
.................................................................................................................................................................................GTGGAAATGCTGGGCTTCG------AG................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................AATGCTGCCCGCGATAATAATCTGCCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
droPer2
AATTCATT---GTTTTTAATGCTGCCCGCGATAATAATCTGCCCCAATTGAAGGTGAGTTCAT-----ATGCGTTCATAGAAAAACGCCCCTCTC--TCTCTCACGCTGTGTGCAGTGC-----------------------------------------------TTGATAAGTGGGTGGAAATGCTGGGCTTCG------AGGCAGCTCTACAGCTTCCAATTCT----------TGCAGCCAGC-----AGCAGTAATATT-AAC-------AACAAA-----------------TTATT-----TTATTGTGTGGAAATC------TCAGCTG-------------GC---------------------------AGA---GT-GTTAGCCTTGTGACTAATCAATAAAGTTCTCACCAA-----GT-------------------------------------------------CACACA-------TAATTCCTCT------------------C------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................AGCCAGC-----AGCAGTAATATT-...................................................................................................................................................................................................................................................................................1911.001010000
droWil2
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATC------TCAGCTGC----------------------------------------------------TAGCCTTGTGACTAATCAATAAAATTCACACACA-------------------CACAT---------------------------G------CACA-------CAAA-------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AATTCATC---GTATTCAATGCTGCACGCGATAATAACCTGCCCCTATTGAAGGTGAGTACCT-----ACC----------------------------------------TGC--------------TCT-G---CAATTGCTA---AT---TCTGCCCCTGCTGCTGATGCGTGGGCGGCTG-------------------------------------------------------------------------------------------------CCTG-------CGACTGCGACTGCGACTTGCAAG-TAAAAATC------ACAGCA-------CAACTCAGCTGCTGCTGCTGCTGCT---------GCAGT---GCTGCCAGCCTTGTGACTAATCAATAAAATTCT-AC---------ACACAAA------CACAC------------------CAC------A--CACACACA-------CATAC------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................GAAGGTGAGTACCT-----ACC----------------------------------------TGC--------------............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................CCTGCTGCTGATGCGTGGGCGGCTG-------------------------------------------------------------------------------------------------CC.................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000001
...............................................................................................................................................TA---AT---TCTGCCCCTGCTGCTGA..................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..........................CGCGATAATAACCTGCCCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.............ATTCAATGCTGCACGCGATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................G-------CGACTGCGACTGCGACTT......................................................................................................................................................................................................................................1970.141000000000000000000000000000100000000000000000000000000000000000
droMoj3
AATTCATC---ATATTCAATGCTGCACGCGATGATAACCTGCCCCTATTGAAGGTGAGTACCT-----GCGCT-----------------------------------------------------------G---CAATTGCCA--AA----G-----GCTGTCGCAGATGCGTGG-----------------------------------------------------------------------------------------------------------GCG-----ACAACCTAACTGCAACTTGCAAG-CAAAAATC------ATAGCG-------CAACTCAGCTGCTGGTGCTGTTGCTGTTGATGTTGCAGT---GCTGCCAGCCTTGTGACTAATCAATAAAATTCT-ACACAC--AC-------C------CATAC--------ACT--CGC-----AAACATA----CACATA-------C-------------------------------------ATACGCGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................GCAGATGCGTGG-----------------------------------------------------------------------------------------------------------GCG-----ACAACCT.................................................................................................................................................................................................................................................2211.001100000

Generated: 05/18/2015 at 05:49 AM