ID:

dan_2902

 Coordinate:

scaffold_13340:4753556-4753760 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.7 -22.6 -22.6

Flybase annnotation

CDS [Dana\GF17761-cds]; CDS [Dana\GF17761-cds]; exon [dana_GLEANR_19024:7]; exon [dana_GLEANR_19024:8]; intron [Dana\GF17761-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCCCCCAATTGAGAAACCCTACGTGTGCGAGATCCCCGACTGCTCAGCGGTAAGTTTTAGGTTTAAGATGCGGCAGCATGTCCTCAGACCGAGCACGAAGCCACAGCTCTCTAACCCGCGGCCCCCCTCGTCACCCCACATTCACAACACCCCACCTCACCTCACCGGCTCTCTTTCCTTTTATTTTCTTTTTGTACCTAACGCTCGAAAAATCAAAAACAAAAAAACCAAACCCTGCCTGCCTCCGAATGTAGAGCTTCAGTTCGAAAGCGGCACTGCACGGCCATGTCCGCATACACGCTTA
**************************************************.......(((.((((..((.(((((((...(((....)))(((((....(((....)))........((.((....)).)).............................((.....))..................................)))))...........................))))).)).)).)))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
 V055
head
 M044
female body
 V039
embryo
...............AACCCTACGTGTGCGAGATCCCCGACT....................................................................................................................................................................................................................................................................... 27 0 1 2.00 2 0 2 0 0 0
........AGTGAGAAACCCTACGTGTGC.................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
........................TGTGCGAGATCCCCGACTGCTCAGC................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0
...................................................................................................................................................................................................................AATCAAAAACAAAAAAACC........................................................................... 19 0 1 1.00 1 1 0 0 0 0
...........................................................................................GAGCACGGGGGCACAGCTCTCT................................................................................................................................................................................................ 22 3 1 1.00 1 0 0 1 0 0
.......................................................................................................................................................................................................................AAAAACAAAAAAATCAAACCC..................................................................... 21 1 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................AAAACAAAAAAACCCAACCCTCCC................................................................. 24 2 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................AACAAAAAAACCCAACCCTACC................................................................. 22 2 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................AAAACAAAAAAACCACACC...................................................................... 19 1 3 0.67 2 2 0 0 0 0
..........................................................................................................................................................................................................................AACAGAAAAACCAAACCCT.................................................................... 19 1 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................................................ACAAACAAAAAAACCAAACC...................................................................... 20 1 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................................................AACAACAAAAAAACCAAACCC..................................................................... 21 1 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................................AAAACAACAAAACCAAACCC..................................................................... 20 1 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................................................................................................................................AGATCGAAAGCGGCACAACAC....................... 21 3 3 0.33 1 1 0 0 0 0
........................................................TTTAGGATTAAGATGCGT....................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 1 0 0
......................................................................................................................................................................................................................CAAAAACAAAACACCCAAACC...................................................................... 21 2 6 0.17 1 1 0 0 0 0
..............................................................................................................................................................................................................CGAAAAAATAAAAACAAAAAAGCCAAA........................................................................ 27 3 7 0.14 1 1 0 0 0 0
.........................................................................................................................................................................................................................AAACAAAAAAACCCAACCCC.................................................................... 20 2 14 0.14 2 2 0 0 0 0
........................................................................................................................................................................................................................AAAACAAAAACAACAAACCCTACC................................................................. 24 3 7 0.14 1 1 0 0 0 0
.............................................................................................................................................................................................................................AAAAAAAACAAACCCTGCCA................................................................ 20 2 8 0.13 1 0 0 0 0 1
.......................................................................................................................................................................................................................AAAAACAAGAACACCAAACCC..................................................................... 21 2 8 0.13 1 1 0 0 0 0
................................................................................................................................................................................................................AAAAACCAAAAACAAAAAAACC........................................................................... 22 1 8 0.13 1 1 0 0 0 0
........................................................................................................................................................................................................................AAAACAAAAAAACCCAACCCC.................................................................... 21 2 9 0.11 1 1 0 0 0 0
...........................................................................................TATCACGAACCCACAGCTC................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 1 0 0
........................................................................................................................................................................................................................AAAACAAAAAAAGCGAACCC..................................................................... 20 2 12 0.08 1 1 0 0 0 0
.................................................................................................................................................................................................................AAAATCAAACACCAAAAAACCCA......................................................................... 23 3 13 0.08 1 1 0 0 0 0
.......................................................................................................................................................................................................................AAAGACAAAAAAACCCAACCCC.................................................................... 22 3 16 0.06 1 1 0 0 0 0
........................................................................................................................................................................................................................AAAACAAAAAAACCAAAACC..................................................................... 20 1 18 0.06 1 1 0 0 0 0
.............................................................................................................................................................................................................................AAAAAAAGCAAACCCCGC.................................................................. 18 2 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................................................AAAAAACAAAAAAACCTAACC...................................................................... 21 2 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................AACTCAAAACCAAAAAAACC........................................................................... 20 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GCGGGGGTTAACTCTTTGGGATGCACACGCTCTAGGGGCTGACGAGTCGCCATTCAAAATCCAAATTCTACGCCGTCGTACAGGAGTCTGGCTCGTGCTTCGGTGTCGAGAGATTGGGCGCCGGGGGGAGCAGTGGGGTGTAAGTGTTGTGGGGTGGAGTGGAGTGGCCGAGAGAAAGGAAAATAAAAGAAAAACATGGATTGCGAGCTTTTTAGTTTTTGTTTTTTTGGTTTGGGACGGACGGAGGCTTACATCTCGAAGTCAAGCTTTCGCCGTGACGTGCCGGTACAGGCGTATGTGCGAAT
**************************************************.......(((.((((..((.(((((((...(((....)))(((((....(((....)))........((.((....)).)).............................((.....))..................................)))))...........................))))).)).)).)))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 M044
female body
 M058
embryo
 V105
male body		 V039
embryo
 V106
head
........................................................................................................................................................................CGAGACAAAGGAAAATAGAAG.................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................................................................................................TTGTGCTTTGGGAGGGACGGA............................................................ 21 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................GTGTATGTGTCGTAGGGTGGAGT................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................GAAAGGAAAATAAAAGAA.................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................AGCTTGGGCGCTGGGGGTAG............................................................................................................................................................................... 20 3 3 0.67 2 0 1 0 1 0 0
...............................................................................AAAGCAGTCTGGCTCGTGCAT............................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 1 0
...............................................................................................................GCTTGGGCGCTGGGGGTAG............................................................................................................................................................................... 19 3 11 0.36 4 0 3 0 1 0 0
..........................................................................GTCGTTCAGGAGTCAGGGTCG.................................................................................................................................................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0
............................................................................................................................................................................AGAAAGGGAAATAAAAGA................................................................................................................... 18 1 3 0.33 1 0 0 0 1 0 0
............................................................................................................................................................................AGAATGGAAAATATAAGAAAA................................................................................................................ 21 2 4 0.25 1 0 0 0 1 0 0
......................................CTTACGACTGGCCATTCAAA....................................................................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0
............................................................................................................................................................................AGAAAGGAAAAGAAAAGGAAAAC.............................................................................................................. 23 2 4 0.25 1 0 0 1 0 0 0
............................................ATTCGCCATTAAATATCCAAAT............................................................................................................................................................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0
...................................................................................................................GGGCGCCAGAGGGAGCAAT........................................................................................................................................................................... 19 3 5 0.20 1 1 0 0 0 0 0
..............................................................................................................AGATTGGGCGCTGGGGGT................................................................................................................................................................................. 18 2 5 0.20 1 0 1 0 0 0 0
..............................................................................................................TGCTTGGGCGCCGGGGG.................................................................................................................................................................................. 17 2 5 0.20 1 1 0 0 0 0 0
.......................................................................................................................................................................CCCAGAGAGAGGAAAATA........................................................................................................................ 18 2 7 0.14 1 0 0 1 0 0 0
...........................................................................................................................................GTAAGTGTCGTGGGGTAGAA.................................................................................................................................................. 20 3 7 0.14 1 1 0 0 0 0 0
...........................................................................TCGTACTGGAGTCTGGTACGTG................................................................................................................................................................................................................ 22 3 8 0.13 1 1 0 0 0 0 0
..........................................................................................................................................................................AGAGAAAGGAAGATAAAA..................................................................................................................... 18 1 8 0.13 1 0 0 0 0 1 0
........................................................................................................................................................................................................................................................TGACATCTCGTAGGCAAGC...................................... 19 3 8 0.13 1 0 1 0 0 0 0
...........CTCTTTGCGATTCACACACT.................................................................................................................................................................................................................................................................................. 20 3 9 0.11 1 1 0 0 0 0 0
..............................................................................TACATGGGTCTGGCTCGTG................................................................................................................................................................................................................ 19 2 10 0.10 1 1 0 0 0 0 0
..............................................................................................................AGCTTGGGCGCCGGGGGTGG............................................................................................................................................................................... 20 3 11 0.09 1 0 1 0 0 0 0
............................................................................................................................................................................AGAAAGGAGAATAGAAGAA.................................................................................................................. 19 2 19 0.05 1 0 0 0 1 0 0
.............................................................................................................................................................................................................AGCTTCTTAGTTTTCGTT.................................................................................. 18 2 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................................................................AAAAAGAAGAACATGGAT........................................................................................................ 18 2 20 0.05 1 0 1 0 0 0 0
...................................................................................................................GTGCGACGGGGGGGGCAGT........................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................GATGTGTTGGGGGGTGGAGT................................................................................................................................................. 20 3 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................CAGACGGGGGCCTACATCT................................................. 19 3 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................TTGTGGGGGGCAGCGGAGT............................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0
................................................................................CAGGAGTCTGGCTCCA................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................AGGGGAGGAGTGGGGTGCA................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1
..............................................................................................................................................TGGCTTGTGGGGTGGAGTG................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:4753506-4753810 + dan_2902 ---CGCCCCCAATTGA---GAAACCCTACGTGTGCGAGATCCCCGACTGCTCAGCGGTAAGTTTTAGG------TT-TA-AG-ATG----------------------------CGGCAGCATGTCC---------------T---------CAG--A-CCG-AGCACGAAGCCACAGCTCT---CT----------------------------------------------------AACC----------------------------CGCG--GCCCCCCTCGTC---ACCC-----------------------------CA-CA----TTCACAACACCC---CACCTCACCTCACC-----------GGCTCTCT--------------------TTCCTTTTATTTTCTTT-TTGT-------ACCTAACGC-TCG---------------AAAAATCAAAAACA---AA---------A--------AAACCA------------AAC--C------------CTGCCTGC--------CT--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCGGCACTGCACGGCCATGTCCGCATACACGCTTA
droBip1 scf7180000396359:437033-437334 - ---CGCCCCCCGTGGA---GAAACCCTATGTGTGCGAGATCCCCGACTGCTCAGCGGTAAGTTTTAGG------CCTT--AG-AAG----------------------------CGGCAGCATGTCC---------------T---------CAG--A-CCG-AGCACGAAGCCACAGCTCT---CT----------------------------------------------------AACC----------------------------CGCG--ACCCCCTTCGTC---ACCC-----------------------------CA-CA----TTCGCAACACCC---CACCTCACCTCACC-----------GGCTCTCT--------------------TTCCTTTTATTTTCTTTTTTGT-------ACATAACGC-TCG---------------AA-AATCAAAAACA---AA-----------ACC---------A------------AAC--C------------CTGCCTGC--------CT--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCGGCACTGCACGGCCATGTCCGCATACACGCTTA
droKik1 scf7180000302388:1791114-1791437 + ---CGCCCGCTGTGGA---GAAGCCCTATGTCTGCGAGATTGCCGATTGCTCAGCGGTAAGTTGAAGTAGTGATCC-TA-AG-AAG----------------------------GGAAAGCATGTCC-----------------TTG-TCCC---AGACCCG-AGCACGAAGTTGCAGCTCT---CCG--------------------------AAACCCCTGTTA-------ACCC--AA-GCTAAAGTCAT---------------------------------------------------------------------------------CACACAACGACC---CACCTCACCTCACC-----------GGCTCTCTCTCTTT--------------CTCTGTTTACTCTATTCTCTGT-------ATATAATGC-TCC---------------AA-AA-----------------------AAACC---------AA-AATCATACCAAAATCC------------CTGCCTG---------CG------C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGTCATGTACGCATTCACGCTTA
droFic1 scf7180000454106:1891147-1891476 + ---CACCCGCCGTGGA---GAAGCCCTACGTCTGCGAGATCGCCGACTGTTCAGCGGTAAGTTGCAGG------TTCCT-AG-TTGTAGATGCAG---------------CAG-CAGCAGCATGCCCCAAAGCCCA----------------CAG--C-CCGCAGCACGAA-ACGCAGTTGCCGCCT----------------------------------------------------AACC----------------------------CGAGTAGC-----------------------------------------------------------TT-GCCCC---CACCTCACCTCTG--A-----CCTCGGCTC--T--------------------CTCTGTTTACTTTCTTTCTTGT-------ACATAACGC-TCG---------------CA-AATCGCAAACCGCAAACCGCTCGT-AAACC---------A--AATCTTGCCCACC--C------------CCGCCTG---------AA--C---CGAACTGT--AGAGCTTCAGCTCGAAAGCAGCGCTGCACGGCCATGTCCGCATTCACGCTTA
droEle1 scf7180000491194:466026-466323 - ---CTCCAGCGGTGGA---GAAGCCCTATGTCTGCGAGATTGCGGACTGTTCAGCGGTAAGTTTTAGG------ATCTC-AG-CAG------------------------CAG-CAGCAGCATGCCC---------------CAAA--------G--C-CCT-AGCATGAA-TTGCAGATCCAGCCC----------------------------------------------------AAGC----------------------------CCAATTGC-----------------------------------------------------------TAAGGCCCCACCACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTCTTGT-------ACATAACGC-TCG---------------AA-AATCA---------------------AACCAAA---------AAATTTACCAATC--C------------CTGCCTG---------CGCGC---C-AAATGTATAGAGCTTCAGTTCGAAAGCGGCGCTGCACGGCCACGTTCGCATACACGCTTA
droRho1 scf7180000779488:513193-513482 - ---CACCGGCGGTGGA---GAAGCCCTATGTGTGCGAGATCGCAGACTGTTCAGCGGTAAGTCTTAGG------TTCTA-AG-CTG----------------------------CAGCAGCATGCTA----------------TTTC-CCCC---AAACCCG-AGCACGAA-TTGCAGATCC---CC----------------------------------------------------AACC----------------------------CGA-ACGC-----------------------------------------------------------CAAGGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTTCTTTCTTTC-TGT-------ACATAACGC-TCG---------------AA-TATAA---------------------AACC---------GA-AATCTGACCAATC--C------------CCGCCTG---------CG--C---C-AAATGTATAGAGCTTCAGTTCGAAAGCGGCGCTGCACGGCCATGTTCGCATACACGCTTA
droBia1 scf7180000302402:4589669-4589928 + ---CTCCGGCTGTGGA---GAAGCCCTACGTCTGCGAGATCGCCGATTGCTCAGCGGTAAGTGGTAGT------AAGG--AA-ATG------------------------CAG-CAGCAGCATGACA---------------CCATG-ACC--------CCA-AGCACGAA-ATGCGGTTAA---CC------------------------------------------------------------------------------------CT-----------------------------------------------------------------CCATACCC---AACCTCACC---------------------------------------------------CACCCTCTATCTTGT-------ACATAACTC-TCG---------------AA-AATCA---------------------AACC---------GA-AATCTTTCCAATC--C------------CCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCAGCGCTGCACGGCCATGTCCGCATACACGCTTA
droTak1 scf7180000414118:24751-25020 - ---CTCCCGCTGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGCTCAGCGGTAAGTTGTAGG------TTTTA-AGTATC------------------------CAG-GATCAGCATGTCC---------------C---------CGAAG------TGCACGAA-ATGCAGTTCC---CT--------------------------------------------------A-AAC-------------------------------------------------------------------------------------------------------------CCTCCCTCGGTT-----------AGCCC--C--------------------TTCTGTTTACTTTCTATCTTGT-------ACATAACGC-TCG---------------AA-AATCAAA--------------------ACC---------AA-ACTCTTTCCAATCCCC------------CCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCAGCGCTGCACGGTCATGTCCGCATACACGCTTA
droEug1 scf7180000407136:402833-403119 + ---CTCCCGCTGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGTTCAGCGGTAAGTTGTAGG------CTCTA-AG-ATGCA--------------------------CTGCAGCATGTCC---------------CCCT------TAG--C-CCG-AGCACGAA-TGGCAGCTCC---CC---------------------------------------------------CAAGC----------------------------CGA-AGGC-----------------------------------------------------------CAACATCC---CACCTTACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTCTTGT-------ACATAACGC-TCA---------------AA-A-------------------------ATCCAAA---------AATCTTGCCAATCCCC------------TCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCGGCGCTGCACGGCCATGTCCGCATACACGCTTA
dm3 chr3R:5294077-5294400 - ---CTCCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATTGCCGACTGTTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCAGCAGCAGCAGCAGCAGCAGCAGCAG-CAGCAGCATGGCC---------------CCTTG-CCCC---AA------TGCACGTA-CTGCAGCTCC---CC--------------------------------------------------AGAAAC----------------------------CAA-ACGC-----------------------------------------------------------TAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TATCACAATCA---AA---------AATCCAAA---------TATCTTGCCCATC--C------------CCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTA
droSim2 3r:15732679-15732987 + dsi_22834 ---CTCCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGCTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCTGCAGCAG---------------CAG-CAGCAGCATGCCC---------------CCTTG-CCCC---AA------TGCACGTA-CTGCAGCTCC---CC--------------------------------------------------AGAAAC----------------------------CGA-ACGC-----------------------------------------------------------TAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCACAATCA---AA---------AATCCAAA---------TATCTTGCCCATC--C------------CCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTA
droSec2 scaffold_0:16602142-16602448 + ---CTCCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGCTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCAGCAGCAG---------------CAG-CAGCAGCATGCCC---------------CCTTG-CCCC---AA------TGCACGTA-CTGCAGCGCC---CC--------------------------------------------------AGAAAC----------------------------CGA-ACGC-----------------------------------------------------------TAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTTTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCACAATCA---AA---------AATCCAAA---------TATCTTGCCC--C--C------------CCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTA
droYak3 3R:9342829-9343166 - dya_986 ---CACCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGTTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCAGCAGC--CAGCAGCAGCAGCAACAG-CAGCCGCATGCCC---------------CACTGCCCCC---AA------TGCACGTA-CTGCAGCTCC---CCC-------------------------------------------------AACAAC----------------------------CGA-ACGC-----------------------------------------------------------TAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCAAAATCA---AA-------TCAATCCACA---------TATCTTGCCCATT--CCCGCCTGCGCCTTCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTCCGCATACACGCTTA
droEre2 scaffold_4770:16309596-16309890 + ---CACCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGTTCCGCGGTAAGTTCTAGG------CTCTC-AT-GTG------------------------CAC-CAGCAGCATGCCC-ATTGCCCTCTGCCCCCCTG-CCCC---AA------TGCACGTG-CTGCAGCTCC---CA---------------------------------------------------AAAA-------------------------------------------------------------------------------------------------------------CCGCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCACAATCA---AA---------TATCCAAA---------TATCTTGCCCATT--C------------CCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTCCGCATACACGCTTA
dp5 2:1817118-1817454 + dps_301 ---TGCCCGCCGTGGA---GAAGCCCTATGTTTGCGAGATTGCCGACTGTTCAGCGGTAAGTTGTAGG------CCTT--AA-ATG----------------------------CTGCAGCATGTCG---------------C---------CAG--C-TCT-AGCAC------------------------------------------------ACCCCTCTTGAGACCTTACCCAG---CCGAATGACAGCCGTAACAGACA-------------------------------C-------ACACACACAC--------ACACA-CA----CACACAACATCC---CGCCTCACCTCACC-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTTCTGTATACTGTATATAATGC-TCT-----------GTACAA-AATCA---------AA-------TC-----AACCAAATCA------------ACCCCT------------CCGCCCGCCCG-----T---C---C-AAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTTCGCATACACGCTTT
droPer2 scaffold_7:1970961-1971291 + ---TGCCCGCCGTGGA---GAAGCCCTATGTTTGCGAGATTGCCGACTGTTCAGCGGTAAGTTGTAGG------CCTT--AA-ATG----------------------------CTGCAGCATGTCG---------------C---------CAG--C-TCT-AGCAC------------------------------------------------ACCCCTCTTGAGACCTTACCCAG---CCGAATGACAGCCGTAACAGACA-------------------------------C-------------ACAC--------ACACA-CA----CACACAACATCC---CGCCTCACCTCACC-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTTCTGTATACTGTATATAATGC-TCT-----------GTACAA-AATCA---------AA-------TC-----AACCAAATCA------------ACCCCT------------CCGCCCGCCCG-----T---C---C-AAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTTCGCATACACGCTTT
droWil2 scf2_1100000004902:9686319-9686648 + ---CACCAGCCATAGA---GAAGCCCTATGTATGCGAAATAGCTGATTGTTCGGCGGTAAGTTTTAAT------TA--GAGT-T-------------------------------TTTTGCATGATT-----------------------------------------------GCA--------------------------------------------TTTTGAAAACTAACAATT---CCAAAT----------------ATATGTACATG--GAACACCTTA------------------------------------------A----CACATAAT--------ACCTTAC--CACTGGCCCATCT----CTC--TCTCTCTCTCTCTCCCATACTCTCCCTTTAATTTCTTTCTTGTATCATACTCATAATGGCATC---------------AA-AAACGAAAAAA---AA---------AAACC---------AAAAATTTT------C--C------------CTGCCTG---------TGTGCAAAAATATTGT--AGAGCTTTACTTCGAAAGCGGCGCTGCACGGTCATGTACGCATACACGCTTA
droVir3 scaffold_13047:713893-714181 - dvi_14936 ---CTCCAACGGTGGAACAGAAGCCCTACGTCTGCGAGATTGCCGACTGCTCGGCGGTAAGTTATAGT------CTAT--GA-ATG----------------------------CTGCAATATATAG---------------AG---------------TCC-GGCAT-------------------------------------------------------------------------------------------------------------------------ATAACCATAA-------TTAGTCCTGCCAAGCCCCATAGCACAAG---A--ACAAGT---CCTCAA----AACTGA-----CTCACA-----T--------------------TCATTTTTCCTTTCTTTCTTGT-------ACATACTGC-TAATATATCTCCCTGC------------------------------------------------G-------------T------------TTGACTACGCG-TCTGTG--A--CCAAACTAT--AGAGCTTCACCTCGAAAGCAGCTCTGCATGGTCATGTTCGCATACACGCTTA
droMoj3 scaffold_6540:4704804-4705094 - ---TTCCGACGGTGGAGCAGAAGCCCTACGTATGCGAGATTGCCGACTGCTCGGCGGTAAGTAGTG--------TTCAGAG---TG----------------------------CGG-------------------------------------------------------------GTAG---AC-CTGTTCAGGTCACGCTACGCTATCCCGATTCCCTGTTG-------------------------------------------------------------------CGCTATTTAGTACCCACATAC--------ACACG-CG----TCTACCAAATAC---CCCCACAACTCACT---------CCGGCTC--A--------------------TT---TTTACTTTCTTTCTTGT-------ACATAATGC-CGC---------------------------------------------------------------------------T------------TTCTCTGC--GTTCCATG--A--CCAAAATGT--AGAGCTTCAGTTCTAAGGCGGCGCTGCATGGTCATGTTCGCATACACGCTTA
droGri2 scaffold_14906:5609426-5609717 + GCACCCCAGTTGTGGAGCAAAAGCCATATGTCTGCGAGATTGCCGACTGCTCAGCGGTAAGTTATAGT------CTACG-AGTATGT-GTATGAG---------------AATGCTGCGGCATGTTT---------------AGTT----------------------------------C-----------------------------------GCCCC--------------------------------------------------------------------ACACACACAC-------ACACACACACTCAGACACACA-CACACGCAAA--CCATGT---CCTCATACCTTAGT---------CGGGTTC--A--------------------TTCTGTTTACTTTCTTTCTTGT-------ACATAATGC-TGA---------------------------------------------------------------------TATC--C------------CCGCCCC----------G--A--TCAAACTGT--AGAGCTTCAGCTCGAAGGCGGCGCTGCACGGTCATGTTCGCATACACGCTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
---CGCCCCCAATTGA---GAAACCCTACGTGTGCGAGATCCCCGACTGCTCAGCGGTAAGTTTTAGG------TT-TA-AG-ATG----------------------------CGGCAGCATGTCC---------------T---------CAG--A-CCG-AGCACGAAGCCACAGCTCT---CT----------------------------------------------------AACC----------------------------CGCG--GCCCCCCTCGTC---ACCC-----------------------------CA-CA----TTCACAACACCC---CACCTCACCTCACC-----------GGCTCTCT--------------------TTCCTTTTATTTTCTTT-TTGT-------ACCTAACGC-TCG---------------AAAAATCAAAAACA---AA---------A--------AAACCA------------AAC--C------------CTGCCTGC--------CT--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCGGCACTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................AACCCTACGTGTGCGAGATCCCCGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000002
..............................TGTGCGAGATCCCCGACTGCTCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAAAACA---AA---------A--------AAACC.....................................................................................................................1911.001010000
droBip1
---CGCCCCCCGTGGA---GAAACCCTATGTGTGCGAGATCCCCGACTGCTCAGCGGTAAGTTTTAGG------CCTT--AG-AAG----------------------------CGGCAGCATGTCC---------------T---------CAG--A-CCG-AGCACGAAGCCACAGCTCT---CT----------------------------------------------------AACC----------------------------CGCG--ACCCCCTTCGTC---ACCC-----------------------------CA-CA----TTCGCAACACCC---CACCTCACCTCACC-----------GGCTCTCT--------------------TTCCTTTTATTTTCTTTTTTGT-------ACATAACGC-TCG---------------AA-AATCAAAAACA---AA-----------ACC---------A------------AAC--C------------CTGCCTGC--------CT--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCGGCACTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotal
No Reads
droKik1
---CGCCCGCTGTGGA---GAAGCCCTATGTCTGCGAGATTGCCGATTGCTCAGCGGTAAGTTGAAGTAGTGATCC-TA-AG-AAG----------------------------GGAAAGCATGTCC-----------------TTG-TCCC---AGACCCG-AGCACGAAGTTGCAGCTCT---CCG--------------------------AAACCCCTGTTA-------ACCC--AA-GCTAAAGTCAT---------------------------------------------------------------------------------CACACAACGACC---CACCTCACCTCACC-----------GGCTCTCTCTCTTT--------------CTCTGTTTACTCTATTCTCTGT-------ATATAATGC-TCC---------------AA-AA-----------------------AAACC---------AA-AATCATACCAAAATCC------------CTGCCTG---------CG------C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGTCATGTACGCATTCACGCTTASizeHit CountTotal NormTotal
No Reads
droFic1
---CACCCGCCGTGGA---GAAGCCCTACGTCTGCGAGATCGCCGACTGTTCAGCGGTAAGTTGCAGG------TTCCT-AG-TTGTAGATGCAG---------------CAG-CAGCAGCATGCCCCAAAGCCCA----------------CAG--C-CCGCAGCACGAA-ACGCAGTTGCCGCCT----------------------------------------------------AACC----------------------------CGAGTAGC-----------------------------------------------------------TT-GCCCC---CACCTCACCTCTG--A-----CCTCGGCTC--T--------------------CTCTGTTTACTTTCTTTCTTGT-------ACATAACGC-TCG---------------CA-AATCGCAAACCGCAAACCGCTCGT-AAACC---------A--AATCTTGCCCACC--C------------CCGCCTG---------AA--C---CGAACTGT--AGAGCTTCAGCTCGAAAGCAGCGCTGCACGGCCATGTCCGCATTCACGCTTASizeHit CountTotal NormTotal
No Reads
droEle1
---CTCCAGCGGTGGA---GAAGCCCTATGTCTGCGAGATTGCGGACTGTTCAGCGGTAAGTTTTAGG------ATCTC-AG-CAG------------------------CAG-CAGCAGCATGCCC---------------CAAA--------G--C-CCT-AGCATGAA-TTGCAGATCCAGCCC----------------------------------------------------AAGC----------------------------CCAATTGC-----------------------------------------------------------TAAGGCCCCACCACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTCTTGT-------ACATAACGC-TCG---------------AA-AATCA---------------------AACCAAA---------AAATTTACCAATC--C------------CTGCCTG---------CGCGC---C-AAATGTATAGAGCTTCAGTTCGAAAGCGGCGCTGCACGGCCACGTTCGCATACACGCTTASizeHit CountTotal NormTotal
No Reads
droRho1
---CACCGGCGGTGGA---GAAGCCCTATGTGTGCGAGATCGCAGACTGTTCAGCGGTAAGTCTTAGG------TTCTA-AG-CTG----------------------------CAGCAGCATGCTA----------------TTTC-CCCC---AAACCCG-AGCACGAA-TTGCAGATCC---CC----------------------------------------------------AACC----------------------------CGA-ACGC-----------------------------------------------------------CAAGGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTTCTTTCTTTC-TGT-------ACATAACGC-TCG---------------AA-TATAA---------------------AACC---------GA-AATCTGACCAATC--C------------CCGCCTG---------CG--C---C-AAATGTATAGAGCTTCAGTTCGAAAGCGGCGCTGCACGGCCATGTTCGCATACACGCTTASizeHit CountTotal NormTotal
No Reads
droBia1
---CTCCGGCTGTGGA---GAAGCCCTACGTCTGCGAGATCGCCGATTGCTCAGCGGTAAGTGGTAGT------AAGG--AA-ATG------------------------CAG-CAGCAGCATGACA---------------CCATG-ACC--------CCA-AGCACGAA-ATGCGGTTAA---CC------------------------------------------------------------------------------------CT-----------------------------------------------------------------CCATACCC---AACCTCACC---------------------------------------------------CACCCTCTATCTTGT-------ACATAACTC-TCG---------------AA-AATCA---------------------AACC---------GA-AATCTTTCCAATC--C------------CCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCAGCGCTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotal
No Reads
droTak1
---CTCCCGCTGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGCTCAGCGGTAAGTTGTAGG------TTTTA-AGTATC------------------------CAG-GATCAGCATGTCC---------------C---------CGAAG------TGCACGAA-ATGCAGTTCC---CT--------------------------------------------------A-AAC-------------------------------------------------------------------------------------------------------------CCTCCCTCGGTT-----------AGCCC--C--------------------TTCTGTTTACTTTCTATCTTGT-------ACATAACGC-TCG---------------AA-AATCAAA--------------------ACC---------AA-ACTCTTTCCAATCCCC------------CCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCAGCGCTGCACGGTCATGTCCGCATACACGCTTASizeHit CountTotal NormTotal
No Reads
droEug1
---CTCCCGCTGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGTTCAGCGGTAAGTTGTAGG------CTCTA-AG-ATGCA--------------------------CTGCAGCATGTCC---------------CCCT------TAG--C-CCG-AGCACGAA-TGGCAGCTCC---CC---------------------------------------------------CAAGC----------------------------CGA-AGGC-----------------------------------------------------------CAACATCC---CACCTTACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTCTTGT-------ACATAACGC-TCA---------------AA-A-------------------------ATCCAAA---------AATCTTGCCAATCCCC------------TCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCGGCGCTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotal
No Reads
dm3
---CTCCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATTGCCGACTGTTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCAGCAGCAGCAGCAGCAGCAGCAGCAG-CAGCAGCATGGCC---------------CCTTG-CCCC---AA------TGCACGTA-CTGCAGCTCC---CC--------------------------------------------------AGAAAC----------------------------CAA-ACGC-----------------------------------------------------------TAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TATCACAATCA---AA---------AATCCAAA---------TATCTTGCCCATC--C------------CCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................AAGCCCTATGTCTGCGAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................AGCTCC---CC--------------------------------------------------AGAAAC----------------------------CAA-ACGC-----------------------------------------------------------........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CCCGCGGTGGA---GAAGCCCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................CGAGATTGCCGACTGTTCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................GCAGCAGCAG-CAGCAGCATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................AGCAGCAGCAGCAG-CAGCAGCATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------ACATAACGC-TCG---------------AA-CCC.........................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................CAGCAGCAGCAGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TGCAGCAGCAGCAGCAGCAGCAGCAGCAG-C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................30100.1010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................ATGCAGCAGCAGCAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.0710000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................ATGCAGCAGCAGCAGCAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.0610000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GCAGCAGCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................GCAGCAGCAGCAGCAG-CAGCAGCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TGCAGCAGCAGCAGCAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................AGCAGCAGCAG-CAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGCAGCAGCAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
---CTCCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGCTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCTGCAGCAG---------------CAG-CAGCAGCATGCCC---------------CCTTG-CCCC---AA------TGCACGTA-CTGCAGCTCC---CC--------------------------------------------------AGAAAC----------------------------CGA-ACGC-----------------------------------------------------------TAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCACAATCA---AA---------AATCCAAA---------TATCTTGCCCATC--C------------CCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCGAAGGCGGCACTGCACGGC....................2712.00200200000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------TATCTTGCCCATC--C------------CCG...................................................................................1811.00100000100000000000
droSec2
---CTCCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGCTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCAGCAGCAG---------------CAG-CAGCAGCATGCCC---------------CCTTG-CCCC---AA------TGCACGTA-CTGCAGCGCC---CC--------------------------------------------------AGAAAC----------------------------CGA-ACGC-----------------------------------------------------------TAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTTTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCACAATCA---AA---------AATCCAAA---------TATCTTGCCC--C--C------------CCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
---CACCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGTTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCAGCAGC--CAGCAGCAGCAGCAACAG-CAGCCGCATGCCC---------------CACTGCCCCC---AA------TGCACGTA-CTGCAGCTCC---CCC-------------------------------------------------AACAAC----------------------------CGA-ACGC-----------------------------------------------------------TAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCAAAATCA---AA-------TCAATCCACA---------TATCTTGCCCATT--CCCGCCTGCGCCTTCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
---CACCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGTTCCGCGGTAAGTTCTAGG------CTCTC-AT-GTG------------------------CAC-CAGCAGCATGCCC-ATTGCCCTCTGCCCCCCTG-CCCC---AA------TGCACGTG-CTGCAGCTCC---CA---------------------------------------------------AAAA-------------------------------------------------------------------------------------------------------------CCGCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCACAATCA---AA---------TATCCAAA---------TATCTTGCCCATT--C------------CCGCCTG---------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--C------------CCGCCTG---------CG--C---C-GAATGT--AG..................................................2111.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--C------------CCGCCTG---------CG--C---C-GAATGT--....................................................1911.0010000010
dp5
---TGCCCGCCGTGGA---GAAGCCCTATGTTTGCGAGATTGCCGACTGTTCAGCGGTAAGTTGTAGG------CCTT--AA-ATG----------------------------CTGCAGCATGTCG---------------C---------CAG--C-TCT-AGCAC------------------------------------------------ACCCCTCTTGAGACCTTACCCAG---CCGAATGACAGCCGTAACAGACA-------------------------------C-------ACACACACAC--------ACACA-CA----CACACAACATCC---CGCCTCACCTCACC-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTTCTGTATACTGTATATAATGC-TCT-----------GTACAA-AATCA---------AA-------TC-----AACCAAATCA------------ACCCCT------------CCGCCCGCCCG-----T---C---C-AAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTTCGCATACACGCTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................CGAGATTGCCGACTGTTCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21114.00141601001023
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGTATATAATGC-TCT-----------GT.................................................................................................................................................................2115.0050100000040
..................................CGAGATTGCCGACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050100000220
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---C---C-AAATGT--AGAGCTTCAGTT........................................2114.0040100000030
.................................................................................................................................................................T-AGCAC------------------------------------------------ACCCCTCTTGAGACC...................................................................................................................................................................................................................................................................................................................................................................................................2113.0030300000000
.............................................................................T--AA-ATG----------------------------CTGCAGCATGTCG---------------C---------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030210000000
......................................................................................................................AGCATGTCG---------------C---------CAG--C-TCT-AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030300000000
............................TGTTTGCGAGATTGCCGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030300000000
................................................................................AA-ATG----------------------------CTGCAGCATGTCG---------------C---------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030200001000
............................................................................TT--AA-ATG----------------------------CTGCAGCATGTCG---------------C---------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020100001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGT--AGAGCTTCAGTTCGAAGGCGG...............................2612.0020000000020
.........................................................................................................................................................................................................................................................................................................................................A----CACACAACATCC---CGCCTCA......................................................................................................................................................................................................................................................................2012.0020200000000
..........................TATGTTTGCGAGATTGCCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020100010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGTATATAATGC-TCT-----------GTA................................................................................................................................................................2112.0020100000010
............................................................................................................................TCG---------------C---------CAG--C-TCT-AGCAC------------------------------------------------ACCC..............................................................................................................................................................................................................................................................................................................................................................................................................2012.0020100100000
..................................CGAGATTGCCGACTGTTCAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000020
.......................................................................................................................................................................................................................................TTACCCAG---CCGAATGACAGCC...........................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
.................................................................................................................................................................T-AGCAC------------------------------------------------ACCCCTCTTGAGAC....................................................................................................................................................................................................................................................................................................................................................................................................2012.0020100000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTTTCTTTTCTGTATAC..............................................................................................................................................................................................2112.0020000000020
................................TGCGAGATTGCCGACTGTTCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000020
..................................................TCAGCGGTAAGTTGTAGG------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020100001000
..............................................................TGTAGG------CCTT--AA-ATG----------------------------CTGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000020
..............................TTTGCGAGATTGCCGACTGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
................................TGCGAGATTGCCGACTGTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020100000010
.............................................................................................................................................................................................................................................................................................................................................................CGCCTCACCTCACC-----------GGCTC--T--------------------T.......................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTACTTTCTTTTCTGTATACT.............................................................................................................................................................................................2111.0010100000000
...................................................................................ATG----------------------------CTGCAGCATGTCG---------------C---------CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------ACCCCT------------CCGCCCGCCCG-----T---C---..............................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTATACTGTATATAATGC-.................................................................................................................................................................................2111.0010000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGT--AGAGCTTCAGTTCGAA....................................2111.0010000000010
.....................................GATTGCCGACTGTTCAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--AGAGCTTCAGTTCGAAGGC.................................2121.0020200000000
........................................................GTAAGTTGTAGG------CCTT--AA-ATG----------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCAGTTCGAAGGCGGCG.............................2121.0020200000000
...............................TTGCGAGATTGCCGACTGTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
..................................................TCAGCGGTAAGTTGTAGG------CC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAATGC-TCT-----------GTACAA-AA..........................................................................................................................................................2111.0010000000010
................................................................................................................................................................................................................................................................................................................................................CACAACATCC---CGCCTCACCTC..................................................................................................................................................................................................................................................................2111.0010100000000
............................................................GTTGTAGG------CCTT--AA-ATG----------------------------CTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.................................GCGAGATTGCCGACTGTTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000000
.....................................................................................................................................................................................................................................................................................................................................................................CTCACC-----------GGCTC--T--------------------TTCTGTTTA...............................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTACTTTCTTTTCTGTATACC.............................................................................................................................................................................................2111.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................TCC---CGCCTCACCTCACC-----------GGC.................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................CTT--AA-ATG----------------------------CTGCAGCATGTCG---------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................T--AA-ATG----------------------------CTGCAGCATGTCG---------------C---------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAATCA------------ACCCCT------------CCGCCGA...............................................................................2311.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTGTATATAATGC-TCT-----------...................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA------------ACCCCT------------CCGCCCGCCCG-----T---..................................................................2111.0010100000000
..........................................................................CCTT--AA-ATG----------------------------CTGCAGCATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................GTTTGCGAGATTGCCGACTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA------------ACCCCT------------CCGCCCGC..............................................................................1811.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGAAGGCGGCGCTGCA........................2021.0020100001000
........................................................................................................................................................................................................................................TACCCAG---CCGAATGACAGCCG..........................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................AG--C-TCT-AGCAC------------------------------------------------ACCCCTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................TCC---CGCCTCACCTCACC-----------GGCT................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----AACCAAATCA------------ACCCCT------------CCGC..................................................................................2111.0010100000000
................................................................................................................................................................................................................................TGAGACCTTACCCAG---CCGA....................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................T-AGCAC------------------------------------------------ACCCCTCTTGAGACCT..................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-----T---C---C-AAATGT--AGAGCTTCAG..........................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATCA------------ACCCCT------------CCGCCCG...............................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATACTGTATATAATGC-.................................................................................................................................................................................2011.0010100000000
.........................CTATGTTTGCGAGATTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--AGAGCTTCAGTTCGAAGGCGGC..............................2511.0010000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCA------------ACCCCT------------CCGCCCGCCC............................................................................2111.0010100000000
..........................TATGTTTGCGAGATTGCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
............................TGTTTGCGAGATTGCCGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------AA-------TC-----AACCAAATCA------------ACCCCT------------......................................................................................2111.0010100000000
.............................................................................................................................................................................................................................TCTTGAGACCTTACCCAG---CC......................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................TGTCG---------------C---------CAG--C-TCT-AGCAC------------------------------------------------ACCC..............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..........................................................................................................................TGTCG---------------C---------CAG--C-TCT-AGCAC------------------------------------------------AC................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGGCGGCGCTGCACGGC....................2021.0020100000001
...................................................................................................................TGCAGCATGTCG---------------C---------CAG--C-TCT-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCTTTTCTGTATACTG............................................................................................................................................................................................2011.0010000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------AA-------TC-----AACCAAATCA------------ACCCC...................................................................................................2111.0010100000000
...............................................................................................................................................................TCT-AGCAC------------------------------------------------ACCCCTCTTGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCG-----T---C---C-AAATGT--AGAGCT..............................................2111.0010100000000
...............................................TGTTCAGCGGTAAGTTGTAGG------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................CGAGATTGCCGACTGTTCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
...................................................................................................................................................................................................................................................................................................................................................AACATCC---CGCCTCACCTCACC-----------....................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................ACA-CA----CACACAACATCC---CGCC.........................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................CACA-CA----CACACAACATCC---CGC..........................................................................................................................................................................................................................................................................2111.0010100000000
................................TGCGAGATTGCCGACTGTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
....................................AGATTGCCGACTGTTCAGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................TT--AA-ATG----------------------------CTGCAGCATGTCG---------------C---------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
......................................................................................................................................................................................................................................CTTACCCAG---CCGAATGACAG.............................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................CTGTTCAGCGGTAAGTTGTAGA------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
................................................GTTCAGCGGTAAGTTGTAGG------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTGTATATAATGC-TCT-----------G..................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................GCAC------------------------------------------------ACCCCTCTTGAGACCTT.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATACTGTATATAATGC-TC...............................................................................................................................................................................2111.0010000000010
............................................................................................................................TCG---------------C---------CAG--C-TCT-AGCAC------------------------------------------------ACCCC.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................ATTGCCGACTGTTCAGCGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
...........................ATGTTTGCGAGATTGCCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTTTTCTGTATACTGTA..........................................................................................................................................................................................2111.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCGAAGGCGGCGCT...........................2020.5011000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGAAGGCGGCGCTGCAC.......................2120.5010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--AGAGCTTCAGTTCGAAGG..................................2020.5010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCAGTTCGAAGGCGG...............................1920.5010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGGCGGCGCTGCACGGC....................2120.5010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--AGAGCTTCAGTTCGAAGGCGGCG.............................2420.5010000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCGAAGGCGGCGCTT..........................2120.5010000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCGGCGCTGCACGG.....................1820.5010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGCGCTGCACGGCA...................1820.5010000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGTTCGAAGGCGGCGC............................2020.5010100000000
.........................................................................................................................................................................................................................................................................................................................C--------ACACA-CA----CACACAACAT..................................................................................................................................................................................................................................................................................18190.0510010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGT--AGAGCTTCAGTTTCC.....................................21200.0510000001000
droPer2
---TGCCCGCCGTGGA---GAAGCCCTATGTTTGCGAGATTGCCGACTGTTCAGCGGTAAGTTGTAGG------CCTT--AA-ATG----------------------------CTGCAGCATGTCG---------------C---------CAG--C-TCT-AGCAC------------------------------------------------ACCCCTCTTGAGACCTTACCCAG---CCGAATGACAGCCGTAACAGACA-------------------------------C-------------ACAC--------ACACA-CA----CACACAACATCC---CGCCTCACCTCACC-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTTCTGTATACTGTATATAATGC-TCT-----------GTACAA-AATCA---------AA-------TC-----AACCAAATCA------------ACCCCT------------CCGCCCGCCCG-----T---C---C-AAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTTCGCATACACGCTTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
---CACCAGCCATAGA---GAAGCCCTATGTATGCGAAATAGCTGATTGTTCGGCGGTAAGTTTTAAT------TA--GAGT-T-------------------------------TTTTGCATGATT-----------------------------------------------GCA--------------------------------------------TTTTGAAAACTAACAATT---CCAAAT----------------ATATGTACATG--GAACACCTTA------------------------------------------A----CACATAAT--------ACCTTAC--CACTGGCCCATCT----CTC--TCTCTCTCTCTCTCCCATACTCTCCCTTTAATTTCTTTCTTGTATCATACTCATAATGGCATC---------------AA-AAACGAAAAAA---AA---------AAACC---------AAAAATTTT------C--C------------CTGCCTG---------TGTGCAAAAATATTGT--AGAGCTTTACTTCGAAAGCGGCGCTGCACGGTCATGTACGCATACACGCTTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................CAATT---CCAAAT----------------ATATGTACATG--G....................................................................................................................................................................................................................................................................................................................................................2311.00100010
droVir3
---CTCCAACGGTGGAACAGAAGCCCTACGTCTGCGAGATTGCCGACTGCTCGGCGGTAAGTTATAGT------CTAT--GA-ATG----------------------------CTGCAATATATAG---------------AG---------------TCC-GGCAT-------------------------------------------------------------------------------------------------------------------------ATAACCATAA-------TTAGTCCTGCCAAGCCCCATAGCACAAG---A--ACAAGT---CCTCAA----AACTGA-----CTCACA-----T--------------------TCATTTTTCCTTTCTTTCTTGT-------ACATACTGC-TAATATATCTCCCTGC------------------------------------------------G-------------T------------TTGACTACGCG-TCTGTG--A--CCAAACTAT--AGAGCTTCACCTCGAAAGCAGCTCTGCATGGTCATGTTCGCATACACGCTTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................CTACGTCTGCGAGATTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
---TTCCGACGGTGGAGCAGAAGCCCTACGTATGCGAGATTGCCGACTGCTCGGCGGTAAGTAGTG--------TTCAGAG---TG----------------------------CGG-------------------------------------------------------------GTAG---AC-CTGTTCAGGTCACGCTACGCTATCCCGATTCCCTGTTG-------------------------------------------------------------------CGCTATTTAGTACCCACATAC--------ACACG-CG----TCTACCAAATAC---CCCCACAACTCACT---------CCGGCTC--A--------------------TT---TTTACTTTCTTTCTTGT-------ACATAATGC-CGC---------------------------------------------------------------------------T------------TTCTCTGC--GTTCCATG--A--CCAAAATGT--AGAGCTTCAGTTCTAAGGCGGCGCTGCATGGTCATGTTCGCATACACGCTTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCACCCCAGTTGTGGAGCAAAAGCCATATGTCTGCGAGATTGCCGACTGCTCAGCGGTAAGTTATAGT------CTACG-AGTATGT-GTATGAG---------------AATGCTGCGGCATGTTT---------------AGTT----------------------------------C-----------------------------------GCCCC--------------------------------------------------------------------ACACACACAC-------ACACACACACTCAGACACACA-CACACGCAAA--CCATGT---CCTCATACCTTAGT---------CGGGTTC--A--------------------TTCTGTTTACTTTCTTTCTTGT-------ACATAATGC-TGA---------------------------------------------------------------------TATC--C------------CCGCCCC----------G--A--TCAAACTGT--AGAGCTTCAGCTCGAAGGCGGCGCTGCACGGTCATGTTCGCATACACGCTTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:47 AM