ID:

dan_289

 Coordinate:

scaffold_13250:2051249-2051335 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.5 -24.9 -24.9

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dan_289  scaffold_13250:2051249-2051273 +
  2. dan_284  scaffold_13250:2137279-2137303 +
star
  1. dan_289  scaffold_13250:2051278-2051301 +
  2. dan_284  scaffold_13250:2137308-2137331 +

Sense Strand Reads

CTACCAGCACCCTCCAGGATCCTCGCAGTCTCCTCATTTAAAGTGAGGACAACCTGCTTTCTTAGTCCCACTGCCTCCTCCAGCTTGGCGACTCCAGTCCGCCGTAGGAAGTGTGGGATTGCACATTTTCAGCATGGCCAGTATGGTTGCAGGGTCCGCCGGCTTCTCTGTCAACCATACGCGGGCC
***********************************....(((((.(((....)))))))).....((((((.((.((((...((..((((((....)).)))))))))).))))))))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V105
male body		 V106
head
..................................................AACCTGCTTTCTTAGTCCCACTGCC................................................................................................................ 25 0 2 4.00 8 6 2 0 0 0
......................TCGCAGTCTCCTCATTTAAAGTGAGGAC......................................................................................................................................... 28 0 20 2.70 54 52 2 0 0 0
.............................................................................................................................................TATGGTTGCAGGGTCCGCCGGCTTC..................... 25 0 14 1.64 23 5 4 14 0 0
.TACCAGCACCCTCCAGGATCCTCGC................................................................................................................................................................. 25 0 20 1.30 26 26 0 0 0 0
.............................................................................................................................................TATGGTTGCAGGGTCCGCCGGC........................ 22 0 14 1.07 15 6 3 6 0 0
....................................................................................................................................................................TCTCTGTCAACCATACGCGGGCC 23 0 1 1.00 1 0 1 0 0 0
.............................................................TTAGTCCCACTGCCTCCTCCAGCTTGG................................................................................................... 27 0 2 1.00 2 0 2 0 0 0
.............................................................................................................................................TATGGTTGCAGGGTCCGCCGGCT....................... 23 0 14 0.79 11 5 4 2 0 0
..................................................AACCTGCTTTCTTAGTCCCACTGC................................................................................................................. 24 0 3 0.67 2 2 0 0 0 0
.............................................................................................................................................TATGGTTGCAGGGTCCGCCGGCTT...................... 24 0 14 0.64 9 4 2 3 0 0
...........................................................................TCCTCCAGCTTGGCGACTCCAGTC........................................................................................ 24 0 2 0.50 1 0 1 0 0 0
..................................................AACCTGCTTTCTTAGTCCCACTGCCTC.............................................................................................................. 27 0 2 0.50 1 0 1 0 0 0
...............................................................................CCAGCTTGGCGACTCCAGTCCGCC.................................................................................... 24 0 2 0.50 1 1 0 0 0 0
..................................................AACCTGCTGTCTTAGTCCCACTGCCCCC............................................................................................................. 28 2 2 0.50 1 0 1 0 0 0
..............................................................TAGTCCCACTGCCTCCTCCAGCTTG.................................................................................................... 25 0 2 0.50 1 0 1 0 0 0
....................................................................................................GCCGTAGGAAGTGTGGGATTGCACA.............................................................. 25 0 2 0.50 1 0 1 0 0 0
..........................................................TTCTTAGTCCCACTGCCTCCTCCAGC....................................................................................................... 26 0 2 0.50 1 0 1 0 0 0
..................................................AACCTGCTTTCTTAGTCCCACTGCCT............................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
...........................................................................TCCTCCAGCTTGGCGACTCCAGTCCGC..................................................................................... 27 0 2 0.50 1 1 0 0 0 0
..................................................AACCTGCTTTCTTAGTCCCACTGCCTCC............................................................................................................. 28 0 2 0.50 1 0 1 0 0 0
..................................................AACCTGCTATCTTAGTCCCACTGCC................................................................................................................ 25 1 2 0.50 1 0 1 0 0 0
.TACCAGCACCCTCCAGGATCCTCGCAG............................................................................................................................................................... 27 0 20 0.45 9 3 6 0 0 0
.............................................................................................................................................TATGGTTGCAGGGTCCGCCGGCC....................... 23 1 14 0.43 6 6 0 0 0 0
............TCCAGGATCCTCGCAGTCTCCTCATT..................................................................................................................................................... 26 0 20 0.35 7 6 0 0 1 0
..................................................AAACTGCACTCTTAGTCCCACTGCC................................................................................................................ 25 3 3 0.33 1 1 0 0 0 0
..................................................AGCCTGCTTTCTTAGTCCCACTGC................................................................................................................. 24 1 3 0.33 1 0 1 0 0 0
.....................CTCGCAGTCTCCTCATTTAAAGTGAGGAC......................................................................................................................................... 29 0 20 0.30 6 6 0 0 0 0
...................................................................................................................GTATTGCACATTTTCAGCATGGCC................................................ 24 1 7 0.29 2 2 0 0 0 0
...................................................................................................................GGATTGCACATTTTCAGCATGGCCAG.............................................. 26 0 7 0.29 2 0 2 0 0 0
.............................................................................................................................................TATGGTTGCAGGGTCCGCCGG......................... 21 0 15 0.27 4 0 4 0 0 0
....................................................................................................GCCGTAGGAAGGTTGGGAT.................................................................... 19 2 4 0.25 1 0 0 0 1 0
.TACCAGCACCCTCCAGGATCCTCGCA................................................................................................................................................................ 26 0 20 0.25 5 0 5 0 0 0
...................TCCTCGCAGTCTCCTCATTTAAAGTGA............................................................................................................................................. 27 0 20 0.25 5 4 1 0 0 0
............................................................................................TCCAGTCCGCCCTAGGAAGTGTGG....................................................................... 24 1 4 0.25 1 0 0 0 1 0
............TCCAGGATCCTCGCAGTCTCCTCA....................................................................................................................................................... 24 0 20 0.20 4 0 4 0 0 0
.......................................................................................................................TGCACATTTTCAGCATGGCCAGTATGGT........................................ 28 0 5 0.20 1 1 0 0 0 0
...............................................................................................................................................TGGTTGCAGGGTCCGCCGGCTTCT.................... 24 0 17 0.18 3 0 3 0 0 0
...............................................................................................................TGTGGGATTGCACATTTTCAGCATG................................................... 25 0 6 0.17 1 1 0 0 0 0
............TCCAGGATCCTCGCAGTCTCCTCAT...................................................................................................................................................... 25 0 20 0.15 3 0 3 0 0 0
.......CACCCTCCAGGATCCTCGCAGTCTCC.......................................................................................................................................................... 26 0 20 0.15 3 3 0 0 0 0
.......................................................................................................................TGCACATTTTCAGCATGGCC................................................ 20 0 7 0.14 1 1 0 0 0 0
......................................................................................................................................TGGCCAGTATGGTTGCAGGGTCCGCCGG......................... 28 0 14 0.14 2 1 1 0 0 0
...................................................................................................................GGATTGCACATTTTCAGCATGGC................................................. 23 0 7 0.14 1 1 0 0 0 0
...................................................................................................................GGATTGCACATTTTCAGCATGGCC................................................ 24 0 7 0.14 1 0 1 0 0 0
...................................................................................................................................................TGCAGGGTCCGCCGGCTTCTCTGTCA.............. 26 0 15 0.13 2 0 2 0 0 0
......................................................................................................................................TGGCCAGTATGGTTGCAGGGTCCGCC........................... 26 0 15 0.13 2 2 0 0 0 0
......................................................................................................................................TGGCCAGTATGGTTGCAGGGTC............................... 22 0 15 0.13 2 1 0 1 0 0
.............................................................................................................................................TATGGTTGCAGGGTCCGCCG.......................... 20 0 16 0.13 2 0 1 1 0 0
..........................................................................................................................................CAGTATGGTTGCAGGGTCCGCC........................... 22 0 16 0.13 2 1 1 0 0 0
.............................................................................................................................................TATGGTTGCAGGGTCCGCC........................... 19 0 16 0.13 2 2 0 0 0 0
...................TCCTCGCAGTCTCCTCATTTAAAGTGAGG........................................................................................................................................... 29 0 20 0.10 2 2 0 0 0 0
..........CCTCCAGGATCCTCGCAGTCTCCTCA....................................................................................................................................................... 26 0 20 0.10 2 0 2 0 0 0
.....................CGCGCAGTCTCCTCATTTAAAGTGAGGAC......................................................................................................................................... 29 1 20 0.10 2 2 0 0 0 0
.......CACCCTCCAGGATCCTCGCAGTCTC........................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
......................TCCCAGTCTCCTCATTTAAAGTGAGGAC......................................................................................................................................... 28 1 20 0.10 2 2 0 0 0 0
......................TCGCAGTCTCCTCATTTAAAGTGAGGACA........................................................................................................................................ 29 0 20 0.10 2 0 2 0 0 0
............TCCAGGATCCTCGCAGTCTCCTCATC..................................................................................................................................................... 26 1 20 0.10 2 2 0 0 0 0
.TACCAGCACCCTCCAGGATCCTCGCAGTC............................................................................................................................................................. 29 0 20 0.10 2 1 1 0 0 0
....................CCTCGCAGTCTCCTCATTTAAAGTGA............................................................................................................................................. 26 0 20 0.10 2 1 1 0 0 0
......GCACCCTCCAGGATCCTCGC................................................................................................................................................................. 20 0 20 0.10 2 0 0 0 0 2
.............................................................................................................................................TATGGTTGGAGGGTCCGCCGGCTTCT.................... 26 1 14 0.07 1 0 1 0 0 0
.............................................................................................................................................TATGGTTGAAGGGTCCGCCGGC........................ 22 1 14 0.07 1 1 0 0 0 0
.............................................................................................................................................TATGGTTGCAGGGTCTGCCGGCT....................... 23 1 14 0.07 1 1 0 0 0 0
.............................................................................................................................................TATGGTTGCAGGGTCCGCCGGCTTCTC................... 27 0 14 0.07 1 0 1 0 0 0
............................................................................................................................................CTATGGTTGCAGGGTCCGCCGGCT....................... 24 1 14 0.07 1 0 1 0 0 0
.............................................................................................................................................TATGGTTGCTGGGTCCGCCGGCT....................... 23 1 14 0.07 1 1 0 0 0 0
.............................................................................................................................................TATGGTTTCAGGGTCCCCCGGC........................ 22 2 14 0.07 1 0 0 1 0 0
........................................................................................................................................GCCAGTATGGTTGCAGGGTCCGCCGGCT....................... 28 0 14 0.07 1 1 0 0 0 0
..........................................................................................................................................CAGTATGGTTGCAGGGTCCGCCGGCT....................... 26 0 14 0.07 1 0 1 0 0 0
..................................................................................................................................................TTGCAGGGTCCGCCGGCTTCTCTGTCT.............. 27 1 15 0.07 1 0 1 0 0 0
.............................................................................................................................................TATGGTTGCAGGTTCCGCCGGCTTC..................... 25 1 15 0.07 1 0 0 1 0 0
......................................................................................................................................TGGCCAGTATGGTTGCCGGGTCC.............................. 23 1 15 0.07 1 0 0 1 0 0
......................................................................................................................................TGGCCAGTATGGTTGCAGGGT................................ 21 0 15 0.07 1 1 0 0 0 0
......................................................................................................................................TGCCCAGTATGGTTGCAGGGTCCGCC........................... 26 1 15 0.07 1 1 0 0 0 0
......................................................................................................................................TGGCCAGTATGGTTGCAGGGTCCGC............................ 25 0 15 0.07 1 1 0 0 0 0
...................................................................................................................................GCATGGCCAGTATGGTTGCAGGGTC............................... 25 0 15 0.07 1 1 0 0 0 0
.............................................................................................................................................TATGGTTGCAGGGGCCGCCGGCT....................... 23 1 15 0.07 1 1 0 0 0 0
......................................................................................................................................TGGCCAGTATGGTTGCAGGGTCCG............................. 24 0 15 0.07 1 0 1 0 0 0
...................................................................................................................................................TGCAGGGTCCGCCGGCTTCTCTGTC............... 25 0 15 0.07 1 0 1 0 0 0
..............................................................................................................................................ATGGTTGCAGGGTCCGCCGGCTT...................... 23 0 15 0.07 1 1 0 0 0 0
..............................................................................................................................................ATGGTTGCAGGGTCCGCCGGCTTC..................... 24 0 15 0.07 1 0 1 0 0 0
....................................................................................................................................CATGGCCAGTATGGTTGCAGGGTC............................... 24 0 15 0.07 1 1 0 0 0 0
.............................................................................................................................................CATGGTTGCAGGGTCCGCCGGC........................ 22 1 15 0.07 1 0 0 1 0 0
.....................................................................................................................................ATGGCCAGTATGGTTGCAGGGTCC.............................. 24 0 15 0.07 1 1 0 0 0 0
..................................................................................................................................AGCATGGCCAGTATGGTTGCAGGGT................................ 25 0 15 0.07 1 0 1 0 0 0
........................................................................................................................................GCCAGTATGGTTGCAGGGTCCGCCGG......................... 26 0 15 0.07 1 0 1 0 0 0
.............................................................................................................................................TATGGGTGCAGGGTCCGCC........................... 19 1 16 0.06 1 1 0 0 0 0
.............................................................................................................................................TATGGTTGCATGGTCCTCCGGCCTC..................... 25 3 16 0.06 1 0 0 1 0 0
......................................................................................................................................TGGCCAGCATGGTTGCAGGGTCCGC............................ 25 1 16 0.06 1 1 0 0 0 0
.............................................................................................................................................TATGGTTGCAGGGTCCGCCGGT........................ 22 1 16 0.06 1 1 0 0 0 0
.............................................................................................................................................TATGGTTGCAGGGTCCGC............................ 18 0 16 0.06 1 1 0 0 0 0
......................................................................................................................................TTGCCAGTATGGTTGCAGGGTCCGCC........................... 26 1 16 0.06 1 1 0 0 0 0
......................................................................................................................................CGGCCAGTATGGTTGCAGGGTCCG............................. 24 1 16 0.06 1 1 0 0 0 0
........................................................................................................................................GCCAGTATGGTTGCAGGGTCCGCC........................... 24 0 16 0.06 1 1 0 0 0 0
.............................................................................................................................................TATGGTTGCAGCGTCCTCCCGC........................ 22 3 16 0.06 1 0 0 1 0 0
...........................................................................................................................................AGGATGGTTGCAGGGTCCGCC........................... 21 1 17 0.06 1 0 1 0 0 0
...........................................................................................................................................AATATGGTTGCAGGGTCCGCCGG......................... 23 1 17 0.06 1 0 1 0 0 0
...............................................................................................................................................TGGTTGCAGGGTCCGCCGGCTTC..................... 23 0 17 0.06 1 0 0 1 0 0
............................................................................................................................................GTATGGTTGCAGGCGCCGCC........................... 20 2 17 0.06 1 1 0 0 0 0
...............................................................................................................................................TGGTTGCAGGGTCCGCCGGCTT...................... 22 0 17 0.06 1 1 0 0 0 0
...................................................................................................................................................TGCAGGGTCCGCCGGCTTCTCTG................. 23 0 17 0.06 1 0 1 0 0 0
.................................................................................................................................................GTTGCAGGGTCCGCCGGCTTCTCTG................. 25 0 17 0.06 1 0 1 0 0 0
...............................................................................................................................................TGGTTGCAGGGTCCGCCGG......................... 19 0 18 0.06 1 0 1 0 0 0
...CCAGCACCCTCCAGGATCCTCAC................................................................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0
.........CCCTCCAGGATCCTCGCAGTCTCCTCA....................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
.........CCCTCCAGGATCCTCGCAGTCTCCC......................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
....................................................................................................................................CGGGGCAAGTATGGTTGCA.................................... 19 3 20 0.05 1 0 0 0 0 1
.....AGCACCCTCCAGGATCCTCGCAGTCTC........................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
......................TCGCAGTCTCCTCATTTAAAGTGAGGA.......................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
..........CCTCCAGGATCCTCGCAGTCTCCT......................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
......................TGGCAGTCTCCTCATTTAAAGTGAGGAC......................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0
....CAGCACCCTCCAGGATCCTCGCAGT.............................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
...................................................................................................AGCCGTAGGAAGGTTGGGA..................................................................... 19 3 20 0.05 1 0 0 0 1 0
.......CACCCTCCAGGATCCTCGCAGTCTCCTC........................................................................................................................................................ 28 0 20 0.05 1 0 1 0 0 0
...................TCCTCGCAGTCTCCTCATTTAAAG................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
..................ATCCTCGCAGTCTCCTCATTTAAAGTG.............................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................TATGGTCGCAGGGTCCGCCGGCTTC..................... 25 1 20 0.05 1 0 1 0 0 0
.......CACCCTCCAGGATCCTCGCAGTC............................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
......GCACCCTCCAGGATCCTCGCAGTCTC........................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................CAGGGGAAGTATGGTTGCA.................................... 19 3 20 0.05 1 0 0 0 1 0
.....................CTCGCAGTCTCCTCATTTAAAGTGGGGAC......................................................................................................................................... 29 1 20 0.05 1 1 0 0 0 0
.TACCAGCACCCTCCAGGATCC..................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
.......................CGCAGTCTCCTCATTTAAAGTGAGGAC......................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
.TACTAGCACCCTCCAGGATCCTCGCAGTC............................................................................................................................................................. 29 1 20 0.05 1 1 0 0 0 0
.........CCCTCCAGGATCCTCGCAGTCTCCTC........................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
.........CCCTCCAGGATCCTCGCAGTCTCCT......................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
.......CGCCCTCCAGGATCCTCGCAGTCTC........................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
..........CGTCCAGGATCCTCGCAGTCTCC.......................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0
...........CTCCAGGATCCTCGCAGTC............................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0
.TACCAGCACCCTCCAGGAT....................................................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0
............TCCAGGATCCTCGCAGTCTCC.......................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
.TACCATCACCCTCCAGGATCCTCGC................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0
.............CCAGGATCCTCGCAGTCTCCTCA....................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
......................TCGCAGTCTCCTCATTTAAAGTGAGG........................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
...........GTCCAGGATCCTCGCAGTCTCCTCAT...................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
......................TCGCATTCTCCTCATTTAAAGTGAGGAC......................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0
...............AGGATCCTCGCAGTCTCC.......................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 1
....CAGCACCCTCCAGGATCCTCGCAG............................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
...................TCCTCGCAGTCTCCTCATTTAAAGT............................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
.....................CTCGCAGTCTCCTCATTTAAAGT............................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.................GTTCCTCGCAGTCTCCTCATTTAAAGT............................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
.....................CTCGCAGTCTCCTCATTTAAAGTG.............................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
.TACCAGCACCCTCCAGGATCCT.................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GATGGTCGTGGGAGGTCCTAGGAGCGTCAGAGGAGTAAATTTCACTCCTGTTGGACGAAAGAATCAGGGTGACGGAGGAGGTCGAACCGCTGAGGTCAGGCGGCATCCTTCACACCCTAACGTGTAAAAGTCGTACCGGTCATACCAACGTCCCAGGCGGCCGAAGAGACAGTTGGTATGCGCCCGG
*********************************************************************....(((((.(((....)))))))).....((((((.((.((((...((..((((((....)).)))))))))).))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V055
head
 V039
embryo
 V105
male body
.......................................................................................................................................................CCCAGGCGGCCGAAGAGACAGTT............. 23 0 1 4.00 4 2 2 0 0 0
........................................................................................................................................................CCAGGCGGCCGAAGAGACAGTT............. 22 0 1 3.00 3 3 0 0 0 0
........................................................................................................................................................CCAGGCGGCCGAAGAGACAGGT............. 22 1 1 2.00 2 2 0 0 0 0
.........................................................................................................................................................CAGGCGGCCGAAGAGACAGTTGGT.......... 24 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................TCCCAGGCGGCCGAAGAGACAGTT............. 24 0 1 1.00 1 0 1 0 0 0
........................................................................................................................................................CCAGGCGGCCGAAGAGACAGT.............. 21 0 20 0.85 17 6 11 0 0 0
..................................................................................................GGCGGCATCCTTCACACCCTAACGTGT.............................................................. 27 0 2 0.50 1 0 1 0 0 0
......................................................................................................GCATCCTTCACACCCTAACGTGT.............................................................. 23 0 2 0.50 1 0 1 0 0 0
.....................................................................................................GGCATCCTTCACACCCTAACGTGT.............................................................. 24 0 2 0.50 1 0 1 0 0 0
......................................................................................................GCATCCTTCACACCCTAACGTG............................................................... 22 0 2 0.50 1 0 1 0 0 0
.....................................................................TGACGGAGGAGGTCGAACGGCTGAGGT........................................................................................... 27 1 2 0.50 1 0 1 0 0 0
...................................................................GGTGACGGAGGGGCTCGA...................................................................................................... 18 2 12 0.42 5 0 1 4 0 0
..................................................................................................TGCGGCATCCTTCACACCCT..................................................................... 20 1 3 0.33 1 1 0 0 0 0
.............................................................................................GGTCAGGCGGCATCCTTCACACCCT..................................................................... 25 0 3 0.33 1 0 1 0 0 0
....................................................................................................................................................CGTCCCAGGCGGCCGAAGAGACAGT.............. 25 0 20 0.30 6 0 6 0 0 0
...................................................TGGATGAAAGAATCCGGGGGA................................................................................................................... 21 3 5 0.20 1 0 0 0 1 0
.........................................................................................................................................................CAGGCGGCCGAAGAGACAGT.............. 20 0 20 0.15 3 0 3 0 0 0
.........GGGAGGTCCTAGGAGCGTCAG............................................................................................................................................................. 21 0 20 0.10 2 1 1 0 0 0
......CGTGGGAGGTCCTAGGAGCGTCA.............................................................................................................................................................. 23 0 20 0.10 2 0 2 0 0 0
.............................................................................................................................AAAGGTCGTACCGGTCATTC.......................................... 20 2 12 0.08 1 0 1 0 0 0
..........................................................................................................................................GTCATACCAACGTCCCAGGCGGCCG........................ 25 0 14 0.07 1 0 1 0 0 0
.......................................................................................................................................CCGGTCATACCAACGTCCC................................. 19 0 15 0.07 1 1 0 0 0 0
.........................................................................................................................................TGTCATACCAACGTCCCAGGCGGCCG........................ 26 1 15 0.07 1 0 1 0 0 0
...................................................................................................................................................ACGTCCCAGGCGGCCGAAGAGACAG............... 25 0 15 0.07 1 0 1 0 0 0
.................................................................................................................................................CAACGTCCCAGGCGGCCGAAGAGACAGT.............. 28 0 15 0.07 1 1 0 0 0 0
....................................................................................AACCGCTGAGGTAAGACGAC................................................................................... 20 3 15 0.07 1 0 0 1 0 0
..................................................................................................................................................AACGTCCCAGGCGGCCGAAGAGACAGT.............. 27 0 15 0.07 1 0 1 0 0 0
...............................................................TCAGGGTGAAGGAGGATG.......................................................................................................... 18 2 15 0.07 1 0 0 1 0 0
.................................................................................................................................................................AGAAGAGACCGTTGGTAT........ 18 2 17 0.06 1 0 0 0 1 0
..................................GTAAATTTCACTCCTGTTGGACG.................................................................................................................................. 23 0 20 0.05 1 0 1 0 0 0
..........GGAGGTCCTAGGAGCGTCAGAG........................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
.........GGGAGGTCCTAGGACCGTCAGAG........................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0
.....TCGTGGGAGGTCCTAGGAGCTT................................................................................................................................................................ 22 1 20 0.05 1 1 0 0 0 0
.......GTGGGAGGTCCTAGGAGCGT................................................................................................................................................................ 20 0 20 0.05 1 0 1 0 0 0
...............TCCTAGGAGCGTCAGAGGAGT....................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
....GTCGTGCGAGGTCCTAGGAGCGT................................................................................................................................................................ 23 1 20 0.05 1 0 1 0 0 0
...GGTCGTGGGAGGTCCTAGGAG................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
...........GAGGTCCTAGGAGCGTCAGAG........................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1
.......GTGGGAGGTCCTAGGAGCGTC............................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
........TGGGAGGTCCTAGGAGCGTCA.............................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13250:2051199-2051385 + dan_289 CTA----CC-AGCACCCT---------CCAGGATCCTCGCAGTCTCCTCATTTAAAGTGAGGACAACCTGCTTTCTTAGTCCCACTGCCTC---------------CTCCAGCTTGGCGAC--TCCAGTCCGCCGTAGGAAGTGTGGGATTGCACATTTTCAGCATGGCCAGTATGGTTGCAGGGTCCGCCGGCTTCTCTGTCAACCATACGCGGGCC
droBip1 scf7180000391623:13621-13809 - TGC----TC-TGATTTTT---------CCAGAATCTCCACGGTCTCCTCTTTAAGAGTGAGGACGACCTGCCTCCGCAGTCCTACCGCCTC---------------CTCCACCTTGGCGACTCTCCAGTCCGCCGTGGTAACTGTCGGATTGCACATCCTCAGCATCGCCACGATGGTTTTAGGGTCGGCTGGCTTTTCTGTGAGCCATACTCGCGCC
droKik1 scf7180000298335:26182-26363 + AGG-----------------------------ATGTCCTCTGCCTCCTTGTTTATCTGGAGGACTGCACTTTCGCCCCCCCCCCC----TCTTTGGGTGATGGGGCCGCAACGTGTAGAACCTTCCAGTCCGCGGTTGGGATATCCGGGTTCTGACGCTGCAGCACCTTCAGCGCCCGGTCCGC---TTGGATTGCGATGGGGAAGAGTACCTTCGCT
droFic1 scf7180000453903:178621-178809 - CCA----CC-GCACTCCT---------TCAACGGCTGCACGCACTCCTGATTGAGAAGTATGGTAACCTTCGACCTGAGACACTTGCCAAT---------------CGCGAAGCCCACCACCCTCCAGTTCTGAGTTGGCAAGTCCGGATTGAAGAGCCGAATTAATTTAAGGATCTCCGCTGGGGAGGAAGGTTCCGATGGAATCAAAGCAGTTGCT
droEle1 scf7180000491226:6259-6448 - TTCTCCGTG-AGCAGCCT---------CTATTGGGGAAACTGATTTCTTGTTCAGCACGACGATGGACTGACTCACCGGTCCCTCAGGCTG---------------CTCCACCTTTACGACCTTCCAGTCGAGCGTGGGGAGGTTTGGGTTGTACCTCTGCGACATAAAGAGGATGTCCGACG---TCTTTATGGAGGACGTCAGCCAGATCCTCGCT
droRho1 scf7180000769622:101-290 - TTC----CCGAGCAGCCT---------CTATGAGAGCGACCGACTCCTTATTCAGCACCACGATCGCTTGGTTGACGTCACCTACGTGCTC---------------CTCCACCTTAACGACTTTCCAGTCTTTTGTGAGGAGATGTGGGTTGCATTCTTGCAACATATAGAGGATGTTTTCCGGTGATGCGATTGCTGCTGGGAGCCAAATTCTGGCT
droBia1 scf7180000299137:14437-14563 - AGG----------------------------------------------------------------------------CACACCACCATT---------------CTCCACCCTAATCACTTTCCAAGCATCTGTCGGAAGCTTAGGGTTAAACCTCGTCAGCAGGCTGAGGATAGCCTCAGGCTCCGAGAGCTTAGACGGCAGCCACACCCTCGCT
droTak1 scf7180000415225:4909-5097 - CCT----CG-AGCATCCT---------CGATTGGCGCCACCGACTCCTTATTTAGGACCAAAACCGCCTGGTTTACGTCCCCTTCATGTTC---------------CTCCACCTTGACGACTCTCCAGTCCTTCGTGGGGAGGTGCGGATTGCAAACTTGCAGCATGTAGAGGATGTCCTCCGGGGCCTTCATGGCTGCTGGGAGCCAGATCCGGGCT
droYak3 v2_chrUn_004:358611-358794 - CCA----TG-AGCGGCCT---------CAATGGGAGCTAGGTACTCCTTGTTTAAGATGAGGATGGCCTGGTTTGTTGGCCCTTCCATCTC---------------GTCGACCTTCACCACTCGCCAGTCCGAGGTGGGAAGGTGTGGGTTGCATAGCTGCAGCATTGTGTGGAATCCTGCCA---CTCGGGTCGTTTCCGTCAACCACGCCCAGG--
dp5 XL_group3b:111228-111421 - CAG---------TACCCTTCGTATCATGGAAAAGTCTTACCGACTCCTCGTTCAAAACGAGGACGACTTGGGGCCTCTGTTTATTGCTCTC---------------CTCTACATTGGCCACCTTTCAATCAGCTGTAGGAAGGTGGGGATTGCAGACCTGCAGAATCCGGAGAATCTTTTCCGGCTCTGCAGGCTTGGCTGATACTCATGCTCTGGCC
droPer2 scaffold_56:132463-132660 - TTC----AC-AGTACCCTTCGTATCATGGAGAAGTCTTACCGACTCCTCGTTCAAAACGAGGATGACTTGTGGCCTCTGTTTATTGCTCTC---------------CTCTACCTTGGCCACCTTTCAATCAGCTGTAGGAAGGTGGGGATTGCAGACCTGCAGAATCCGGAGAATCTTTTCCGGCTCTGCAGGCTTGGCTGATACTCATGCTCTGGCC
droVir3 scaffold_13047:17380285-17380434 - T--------------------------------------------CCTTATTTAGAATGA---TCACCTGATTGGTGGCACCGTGCACCTC---------------TTCTACATTCAGAACTTTCCAGTCTTTGGTATGTAGAATTGGGTTGCGTCGCATTGTCA------TTATGTGCTCTGGCTCTATTATGGACGAAGGTGACCACAACCGGGGG
droMoj3 scaffold_6540:23750019-23750113 - T---------------------------------------------------------------------------------------------------------------------------CCAGTCGTTTGTCGGCAAGTTCGGGTTGAATCTTGTTAGCAATTCGAGAATGTCATTGGACTCGGATGGCGTTTCCGGTAGCCAAGCTGTAGCC
droGri2 scaffold_15057:5779-5967 + CCC----TT-GGCGGCTT---------CAATTGGGGCTAGCGATTCCTTGTTAAGAATCAGCACTGCCTGATTTGTTGGCCCCTCGGTGGC---------------CTCAATCTTCACCACCCTCCAGTCTTGGGTGGGGAGAGAGGGGTTGCAGAGTTGCAGAAGGTTAAGCACTTGGTCCGGCTCCTTTAGGGAAGCCGGGATCCAGATGCGTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CTA----CC-AGCACCCT---------CCAGGATCCTCGCAGTCTCCTCATTTAAAGTGAGGACAACCTGCTTTCTTAGTCCCACTGCCTC---------------CTCCAGCTTGGCGAC--TCCAGTCCGCCGTAGGAAGTGTGGGATTGCACATTTTCAGCATGGCCAGTATGGTTGCAGGGTCCGCCGGCTTCTCTGTCAACCATACGCGGGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................AACCTGCTTTCTTAGTCCCACTGCC.................................................................................................................................2524.008260000
....................................TCGCAGTCTCCTCATTTAAAGTGAGGAC..........................................................................................................................................................28202.70542520000
............................................................................................................................................................................TATGGTTGCAGGGTCCGCCGGCTTC.....................25141.64234514000
.TA----CC-AGCACCCT---------CCAGGATCCTCGC..................................................................................................................................................................................25201.30260260000
............................................................................................................................................................................TATGGTTGCAGGGTCCGCCGGC........................22141.0715366000
...................................................................................................................................................................................................TCTCTGTCAACCATACGCGGGCC2311.001100000
...........................................................................TTAGTCCCACTGCCTC---------------CTCCAGCTTGG.....................................................................................................2721.002200000
............................................................................................................................................................................TATGGTTGCAGGGTCCGCCGGCT.......................23140.7911452000
................................................................AACCTGCTTTCTTAGTCCCACTGC..................................................................................................................................2430.672020000
............................................................................................................................................................................TATGGTTGCAGGGTCCGCCGGCTT......................24140.649243000
.........................................................................................TC---------------CTCCAGCTTGGCGAC--TCCAGTC........................................................................................2420.501100000
................................................................AACCTGCTTTCTTAGTCCCACTGCCTC---------------................................................................................................................2720.501100000
............................................................................................................CCAGCTTGGCGAC--TCCAGTCCGCC....................................................................................2420.501010000
............................................................................TAGTCCCACTGCCTC---------------CTCCAGCTTG......................................................................................................2520.501100000
...................................................................................................................................GCCGTAGGAAGTGTGGGATTGCACA..............................................................2520.501100000
........................................................................TTCTTAGTCCCACTGCCTC---------------CTCCAGC.........................................................................................................2620.501100000
................................................................AACCTGCTTTCTTAGTCCCACTGCCT................................................................................................................................2620.501010000
.........................................................................................TC---------------CTCCAGCTTGGCGAC--TCCAGTCCGC.....................................................................................2720.501010000
................................................................AACCTGCTTTCTTAGTCCCACTGCCTC---------------C...............................................................................................................2820.501100000
.TA----CC-AGCACCCT---------CCAGGATCCTCGCAG................................................................................................................................................................................27200.459630000
............................................................................................................................................................................TATGGTTGCAGGGTCCGCCGGCC.......................23140.436060000
.................T---------CCAGGATCCTCGCAGTCTCCTCATT......................................................................................................................................................................26200.357060010
...................................CTCGCAGTCTCCTCATTTAAAGTGAGGAC..........................................................................................................................................................29200.306060000
..................................................................................................................................................GGATTGCACATTTTCAGCATGGCCAG..............................................2670.292200000
............................................................................................................................................................................TATGGTTGCAGGGTCCGCCGG.........................21150.274400000
.TA----CC-AGCACCCT---------CCAGGATCCTCGCA.................................................................................................................................................................................26200.255500000
.................................TCCTCGCAGTCTCCTCATTTAAAGTGA..............................................................................................................................................................27200.255140000
.................T---------CCAGGATCCTCGCAGTCTCCTCA........................................................................................................................................................................24200.204400000
......................................................................................................................................................TGCACATTTTCAGCATGGCCAGTATGGT........................................2850.201010000
..............................................................................................................................................................................TGGTTGCAGGGTCCGCCGGCTTCT....................24170.183300000
..............................................................................................................................................TGTGGGATTGCACATTTTCAGCATG...................................................2560.171010000
.................T---------CCAGGATCCTCGCAGTCTCCTCAT.......................................................................................................................................................................25200.153300000
............CACCCT---------CCAGGATCCTCGCAGTCTCC...........................................................................................................................................................................26200.153030000
......................................................................................................................................................TGCACATTTTCAGCATGGCC................................................2070.141010000
.....................................................................................................................................................................TGGCCAGTATGGTTGCAGGGTCCGCCGG.........................28140.142110000
..................................................................................................................................................GGATTGCACATTTTCAGCATGGC.................................................2370.141010000
..................................................................................................................................................GGATTGCACATTTTCAGCATGGCC................................................2470.141100000
..................................................................................................................................................................................TGCAGGGTCCGCCGGCTTCTCTGTCA..............26150.132200000
.....................................................................................................................................................................TGGCCAGTATGGTTGCAGGGTCCGCC...........................26150.132020000
.....................................................................................................................................................................TGGCCAGTATGGTTGCAGGGTC...............................22150.132011000
............................................................................................................................................................................TATGGTTGCAGGGTCCGCCG..........................20160.132101000
.........................................................................................................................................................................CAGTATGGTTGCAGGGTCCGCC...........................22160.132110000
............................................................................................................................................................................TATGGTTGCAGGGTCCGCC...........................19160.132020000
.................................TCCTCGCAGTCTCCTCATTTAAAGTGAGG............................................................................................................................................................29200.102020000
...............CCT---------CCAGGATCCTCGCAGTCTCCTCA........................................................................................................................................................................26200.102200000
............CACCCT---------CCAGGATCCTCGCAGTCTC............................................................................................................................................................................25200.102020000
....................................TCGCAGTCTCCTCATTTAAAGTGAGGACA.........................................................................................................................................................29200.102200000
.................T---------CCAGGATCCTCGCAGTCTCCTCATC......................................................................................................................................................................26200.102020000
.TA----CC-AGCACCCT---------CCAGGATCCTCGCAGTC..............................................................................................................................................................................29200.102110000
..................................CCTCGCAGTCTCCTCATTTAAAGTGA..............................................................................................................................................................26200.102110000
...........GCACCCT---------CCAGGATCCTCGC..................................................................................................................................................................................20200.102000002
............................................................................................................................................................................TATGGTTGCAGGGTCCGCCGGCTTCTC...................27140.071100000
.......................................................................................................................................................................GCCAGTATGGTTGCAGGGTCCGCCGGCT.......................28140.071010000
.........................................................................................................................................................................CAGTATGGTTGCAGGGTCCGCCGGCT.......................26140.071100000
.................................................................................................................................................................................TTGCAGGGTCCGCCGGCTTCTCTGTCT..............27150.071100000
.....................................................................................................................................................................TGGCCAGTATGGTTGCAGGGT................................21150.071010000
.....................................................................................................................................................................TGGCCAGTATGGTTGCAGGGTCCGC............................25150.071010000
..................................................................................................................................................................GCATGGCCAGTATGGTTGCAGGGTC...............................25150.071010000
.....................................................................................................................................................................TGGCCAGTATGGTTGCAGGGTCCG.............................24150.071100000
..................................................................................................................................................................................TGCAGGGTCCGCCGGCTTCTCTGTC...............25150.071100000
.............................................................................................................................................................................ATGGTTGCAGGGTCCGCCGGCTT......................23150.071010000
.............................................................................................................................................................................ATGGTTGCAGGGTCCGCCGGCTTC.....................24150.071100000
...................................................................................................................................................................CATGGCCAGTATGGTTGCAGGGTC...............................24150.071010000
....................................................................................................................................................................ATGGCCAGTATGGTTGCAGGGTCC..............................24150.071010000
.................................................................................................................................................................AGCATGGCCAGTATGGTTGCAGGGT................................25150.071100000
.......................................................................................................................................................................GCCAGTATGGTTGCAGGGTCCGCCGG.........................26150.071100000
............................................................................................................................................................................TATGGTTGCAGGGTCCGCCGGT........................22160.061010000
............................................................................................................................................................................TATGGTTGCAGGGTCCGC............................18160.061010000
.......................................................................................................................................................................GCCAGTATGGTTGCAGGGTCCGCC...........................24160.061010000
..............................................................................................................................................................................TGGTTGCAGGGTCCGCCGGCTTC.....................23170.061001000
..............................................................................................................................................................................TGGTTGCAGGGTCCGCCGGCTT......................22170.061010000
..................................................................................................................................................................................TGCAGGGTCCGCCGGCTTCTCTG.................23170.061100000
................................................................................................................................................................................GTTGCAGGGTCCGCCGGCTTCTCTG.................25170.061100000
..............................................................................................................................................................................TGGTTGCAGGGTCCGCCGG.........................19180.061100000
..............CCCT---------CCAGGATCCTCGCAGTCTCCTCA........................................................................................................................................................................27200.051100000
..............CCCT---------CCAGGATCCTCGCAGTCTCCC..........................................................................................................................................................................25200.051010000
..........AGCACCCT---------CCAGGATCCTCGCAGTCTC............................................................................................................................................................................27200.051100000
....................................TCGCAGTCTCCTCATTTAAAGTGAGGA...........................................................................................................................................................27200.051100000
...............CCT---------CCAGGATCCTCGCAGTCTCCT..........................................................................................................................................................................24200.051100000
........C-AGCACCCT---------CCAGGATCCTCGCAGT...............................................................................................................................................................................25200.051010000
............CACCCT---------CCAGGATCCTCGCAGTCTCCTC.........................................................................................................................................................................28200.051100000
.................................TCCTCGCAGTCTCCTCATTTAAAG.................................................................................................................................................................24200.051010000
................................ATCCTCGCAGTCTCCTCATTTAAAGTG...............................................................................................................................................................27200.051010000
............CACCCT---------CCAGGATCCTCGCAGTC..............................................................................................................................................................................23200.051010000
...........GCACCCT---------CCAGGATCCTCGCAGTCTC............................................................................................................................................................................26200.051100000
.TA----CC-AGCACCCT---------CCAGGATCC......................................................................................................................................................................................21200.051010000
.....................................CGCAGTCTCCTCATTTAAAGTGAGGAC..........................................................................................................................................................27200.051010000
..............CCCT---------CCAGGATCCTCGCAGTCTCCTC.........................................................................................................................................................................26200.051010000
..............CCCT---------CCAGGATCCTCGCAGTCTCCT..........................................................................................................................................................................25200.051100000
................CT---------CCAGGATCCTCGCAGTC..............................................................................................................................................................................19200.051010000
.TA----CC-AGCACCCT---------CCAGGAT........................................................................................................................................................................................19200.051001000
.................T---------CCAGGATCCTCGCAGTCTCC...........................................................................................................................................................................21200.051010000
...........................CCAGGATCCTCGCAGTCTCCTCA........................................................................................................................................................................23200.051100000
....................................TCGCAGTCTCCTCATTTAAAGTGAGG............................................................................................................................................................26200.051100000
.............................AGGATCCTCGCAGTCTCC...........................................................................................................................................................................18200.051000001
........C-AGCACCCT---------CCAGGATCCTCGCAG................................................................................................................................................................................24200.051100000
.................................TCCTCGCAGTCTCCTCATTTAAAGT................................................................................................................................................................25200.051100000
...................................CTCGCAGTCTCCTCATTTAAAGT................................................................................................................................................................23200.051010000
...................................CTCGCAGTCTCCTCATTTAAAGTG...............................................................................................................................................................24200.051010000
.TA----CC-AGCACCCT---------CCAGGATCCT.....................................................................................................................................................................................22200.051010000
droBip1
TGC----TC-TGATTTTT---------CCAGAATCTCCACGGTCTCCTCTTTAAGAGTGAGGACGACCTGCCTCCGCAGTCCTACCGCCTC---------------CTCCACCTTGGCGACTCTCCAGTCCGCCGTGGTAACTGTCGGATTGCACATCCTCAGCATCGCCACGATGGTTTTAGGGTCGGCTGGCTTTTCTGTGAGCCATACTCGCGCCSizeHit CountTotal NormTotal
No Reads
droKik1
AGG-----------------------------ATGTCCTCTGCCTCCTTGTTTATCTGGAGGACTGCACTTTCGCCCCCCCCCCC----TCTTTGGGTGATGGGGCCGCAACGTGTAGAACCTTCCAGTCCGCGGTTGGGATATCCGGGTTCTGACGCTGCAGCACCTTCAGCGCCCGGTCCGC---TTGGATTGCGATGGGGAAGAGTACCTTCGCTSizeHit CountTotal NormTotal
No Reads
droFic1
CCA----CC-GCACTCCT---------TCAACGGCTGCACGCACTCCTGATTGAGAAGTATGGTAACCTTCGACCTGAGACACTTGCCAAT---------------CGCGAAGCCCACCACCCTCCAGTTCTGAGTTGGCAAGTCCGGATTGAAGAGCCGAATTAATTTAAGGATCTCCGCTGGGGAGGAAGGTTCCGATGGAATCAAAGCAGTTGCTSizeHit CountTotal NormTotal
No Reads
droEle1
TTCTCCGTG-AGCAGCCT---------CTATTGGGGAAACTGATTTCTTGTTCAGCACGACGATGGACTGACTCACCGGTCCCTCAGGCTG---------------CTCCACCTTTACGACCTTCCAGTCGAGCGTGGGGAGGTTTGGGTTGTACCTCTGCGACATAAAGAGGATGTCCGACG---TCTTTATGGAGGACGTCAGCCAGATCCTCGCTSizeHit CountTotal NormTotal
No Reads
droRho1
TTC----CCGAGCAGCCT---------CTATGAGAGCGACCGACTCCTTATTCAGCACCACGATCGCTTGGTTGACGTCACCTACGTGCTC---------------CTCCACCTTAACGACTTTCCAGTCTTTTGTGAGGAGATGTGGGTTGCATTCTTGCAACATATAGAGGATGTTTTCCGGTGATGCGATTGCTGCTGGGAGCCAAATTCTGGCTSizeHit CountTotal NormTotal
No Reads
droBia1
AGG----------------------------------------------------------------------------CACACCACCATT---------------CTCCACCCTAATCACTTTCCAAGCATCTGTCGGAAGCTTAGGGTTAAACCTCGTCAGCAGGCTGAGGATAGCCTCAGGCTCCGAGAGCTTAGACGGCAGCCACACCCTCGCTSizeHit CountTotal NormTotal
No Reads
droTak1
CCT----CG-AGCATCCT---------CGATTGGCGCCACCGACTCCTTATTTAGGACCAAAACCGCCTGGTTTACGTCCCCTTCATGTTC---------------CTCCACCTTGACGACTCTCCAGTCCTTCGTGGGGAGGTGCGGATTGCAAACTTGCAGCATGTAGAGGATGTCCTCCGGGGCCTTCATGGCTGCTGGGAGCCAGATCCGGGCTSizeHit CountTotal NormTotal
No Reads
droYak3
CCA----TG-AGCGGCCT---------CAATGGGAGCTAGGTACTCCTTGTTTAAGATGAGGATGGCCTGGTTTGTTGGCCCTTCCATCTC---------------GTCGACCTTCACCACTCGCCAGTCCGAGGTGGGAAGGTGTGGGTTGCATAGCTGCAGCATTGTGTGGAATCCTGCCA---CTCGGGTCGTTTCCGTCAACCACGCCCAGG--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................TGGTTTGTTGGCCCTTCCATCTC---------------GTC.............................................................................................................26321.67650381000000026
....................................................................TGGTTTGTTGGCCCTTCCATCTC---------------GT..............................................................................................................2535.0015011200020000
..................................................................................TTCCATCTC---------------GTCGACCTTCACCACT................................................................................................2544.0016014000020000
..................................................................................TTCCATCTC---------------GTCGACCTTCACCACTCG..............................................................................................2732.67808000000000
....................................................................TGGTTTGTTGGCCCTTCCATCTC---------------G...............................................................................................................2432.00606000000000
..................................................................................TTCCATCTC---------------GTCGACCTTCACCACTCGC.............................................................................................2831.67505000000000
.....................................................................GGTTTGTTGGCCCTTCCATCTC---------------GTC.............................................................................................................2531.33404000000000
.........................................................................................TC---------------GTCGACCTTCACCACTCGCCAGT.........................................................................................25201.3026000000000026
.................................................................................................................TTCACCACTCGCCAGTCCGAGGTGGGA..............................................................................27201.1022000000000022
.................................................................................................................................................TGGGTTGCATAGCTGCAGC......................................................1911.00101000000000
...............................................................................................................................................................................TCCTGCCA---CTCGGGTCGTTTCCGTC...............2511.00100100000000
...........................................................................................................TCGACCTTCACCACTCGCCAGTCCGA.....................................................................................26200.9519020000000017
.......................................................................................TCTC---------------GTCGACCTTCACC...................................................................................................1780.88700000000007
.........................................................................TGTTGGCCCTTCCATCTC---------------GTCGACC.........................................................................................................2550.60302100000000
.............................................................................................................GACCTTCACCACTCGCCAGTCCGAGG...................................................................................26200.5511011000000000
..................................................................................TTCCATCTC---------------GTCGACCTTCACCACTC...............................................................................................2640.50202000000000
..................................................................................TTCCATCTC---------------GTCGACCTTCACCAC.................................................................................................2440.50202000000000
.................................................................................................................TTCACCACTCGCCAGTCCGAGGTGGG...............................................................................26200.5010000000000010
.................................................................................................................TTCACCACTCGCCAGTCCGAGGTGG................................................................................25200.501007300000000
.................................................................................................................TTCACCACTCGCCAGTCCGAGGTG.................................................................................24200.40808000000000
.............................................................................................................GACCTTCACCACTCGCCAGTCCGAG....................................................................................25200.35707000000000
....................................................................TGGTTTGTTGGCCCTTCCATCTC---------------GTCG............................................................................................................2730.33101000000000
.......................................................................................TCTC---------------GTCGACCTTCACCACTCGCCAGTC........................................................................................2860.33202000000000
..................................................................................TTCCATCTC---------------GTCGACCTTCACCACTCGCC............................................................................................2930.33101000000000
.......................................................................................TCTC---------------GTCGACCTTCACCACTCGCCAG..........................................................................................2660.33201100000000
..................................................................................TTCCATCTC---------------GTCGACCTTCACCACTCGCG............................................................................................2930.33101000000000
....................................................................TGGTTTGTTGGCCCTTCCATCTC---------------GTCT............................................................................................................2730.33101000000000
..........................................................................................................................................................................TGGAATCCTGCCA---CTCGGGTCGTTTC...................26150.27403100000000
..................................................................................TTCCATCTC---------------GTCGACCTTCACCA..................................................................................................2340.25101000000000
..................................................................................TTCCATCTC---------------GTCGACCTTCACCAA.................................................................................................2440.25101000000000
..................................................................................TTCCATCTC---------------GTCGACCTTCACC...................................................................................................2250.20100100000000
.......................................................................TTTGTTGGCCCTTCCATCTC---------------GTCGACC.........................................................................................................2750.20100100000000
.................................................................................................................TTCACCACTCGCCAGTCCGAGGTGGGAAGG...........................................................................30200.20400000000004
...................................................................................TCCATCTC---------------GTCGACCTTCACCACTCGCCA...........................................................................................2960.17100000010000
...................................................................................TCCATCTC---------------GTCGACCTTCACCACTCGC.............................................................................................2760.17101000000000
.....................................................................................CATCTC---------------GTCGACCTTCACCACTCGCC............................................................................................2660.17100100000000
.......................................................................................TCTC---------------GTCGACCTTCACCACTCGCCA...........................................................................................2560.17101000000000
........................................................................................CTC---------------GTCGACCTTCACCACTCGCCAG..........................................................................................2560.17101000000000
.......................................................................................TCTC---------------GTCGACCTTCACCACTCGCCAGT.........................................................................................2760.17101000000000
.....................................................................................CATCTC---------------GTCGACCTTCACCACTCGCCAG..........................................................................................2860.17101000000000
................................................................................................................................TCCGAGGTGGGAAGGTGTGG......................................................................20130.15202000000000
.............................................................................................................GACCTTCACCACTCGCCAGTCCGA.....................................................................................24200.15303000000000
......................................................................................................................CACTCGCCAGTCCGAGGTGGGAAGGT..........................................................................26200.15300000000003
.................................................................................................................TTCACCACTCGCCAGTCCGAGGT..................................................................................23200.15302100000000
.........................................................................................TC---------------GTCGACCTTCACCACTCGCCAGTCC.......................................................................................27200.15303000000000
.........................................................................................................................TCGCCAGTCCGAGGTGGGAAGGTGT........................................................................25140.14202000000000
..............................................................................................................ACCTTCACCACTCGCCAGTCCGAGG...................................................................................25200.10202000000000
..................................................................................................................TCACCACTCGCCAGTCCGAGGTGGGA..............................................................................26200.10202000000000
..........................................................................................................................................................................TGGAATCCTGCCA---CTCGGGTCGT......................23200.10201100000000
.................................................................................................................TTCACCACTCGCCAGTCCGAGG...................................................................................22200.10202000000000
..........................................................................................................................................................................TGGAATCCTGCCA---CTCGGGTCGTT.....................24200.10202000000000
...........................................................................................................................GCCAGTCCGAGGTGGGAAGGTGTGT......................................................................25140.07101000000000
...........................................................................TTGGCCCTTCCATCTC---------------GTCGACCTTCAC....................................................................................................28170.06101000000000
...........................................................................TTGGCCCTTCCATCTC---------------GTCGACCTTC......................................................................................................26170.06101000000000
............................................................................TGGCCCTTCCATCTC---------------GTCGACCTTCAA....................................................................................................27180.06101000000000
............................................................................TGGCCCTTCCATCTC---------------GTCGACCTTCAC....................................................................................................27180.06101000000000
...........................................................................TTGGCCCTTCCATCTC---------------GTC.............................................................................................................19190.05101000000000
............................................................................TGGCCCTTCCATCTC---------------GTCGACCTT.......................................................................................................24190.05101000000000
.........................................................................................................................................................................GTGGAATCCTGCCA---CTCGGGTCGTTTA...................27200.05101000000000
..........................................................................................................GTCGACCTTCACCACTCGCCAGTCCG......................................................................................26200.05101000000000
.............................................................................................................GACCTTCACCACTCGCCAGTC........................................................................................21200.05101000000000
.........................................................................................TC---------------GTCGACCTTCACCACTCGCCAG..........................................................................................24200.05101000000000
.................................................................................................................TTCACCACTCGCCAGTCCGAGGTGGGAA.............................................................................28200.05101000000000
...........................................................................................................TCGACCTTCACCACTCGCCAGTCCGAGG...................................................................................28200.05100100000000
..............................................................................................................ACCTTCACCACTCGCCAGTCCGAG....................................................................................24200.05101000000000
..................................................................................................................TCACCACTCGCCAGTCCGAGGTG.................................................................................23200.05101000000000
...........................................................................................................TCGACCTTCACCACTCGCCAGTCCGAG....................................................................................27200.05101000000000
.........................................................................................TC---------------GTCGACCTTCACCACTCGCCAGTCCGA.....................................................................................29200.05101000000000
..................................................................................................................TCACCACTCGCCAGTCCGAGGTGGGAAGG...........................................................................29200.05100000000001
dp5
CAG---------TACCCTTCGTATCATGGAAAAGTCTTACCGACTCCTCGTTCAAAACGAGGACGACTTGGGGCCTCTGTTTATTGCTCTC---------------CTCTACATTGGCCACCTTTCAATCAGCTGTAGGAAGGTGGGGATTGCAGACCTGCAGAATCCGGAGAATCTTTTCCGGCTCTGCAGGCTTGGCTGATACTCATGCTCTGGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................TGCAGACCTGCAGAATCCGGAGAATC..........................................26134.9264044300001430
......................................................................................................................................................TGCAGACCTGCAGAATCCGGAGAAT...........................................25131.622101620000300
......................................................................................................................................................TGCAGACCTGCAGAATCCGGAGAATCT.........................................27131.622101900000200
......................................................................................................................................GTAGGAAGGTGGGGATGA..................................................................1881.38110803000000
...........................................................................................................................TTCAATCAGCTGTAGGAAGGTG.........................................................................2211.0010000000010
....................................................CAAAACGAGGACGACTTGGGGC................................................................................................................................................2211.0010000000100
................................................................................................................................TCAGCTGTAGGAAGGTGGG.......................................................................1911.0010000000100
......................................................................................................................................................TGCAGACCTGCAGAATCCGGAGAA............................................24130.92120900000300
.....................................................................................................................................................TTGCAGACCTGCAGAATCCGGAGAATC..........................................27110.8290710000100
.......................................................................................................................................................GCAGACCTGCAGAATCCGGAGAATC..........................................25130.771001000000000
......................................................................................................................................................TGCAGACCTGCAGAATCCGGA...............................................21130.6990600000120
......................................................................................................................................................TGCAGACCTGCAGAATCCGGAGA.............................................23130.5470700000000
.....................................................................................................................................................TTGCAGACCTGCAGAATCCGG................................................21110.4550500000000
.............................................................................................................................................................CTGCAGAATCCGGAGAATCTT........................................21170.4170100006000
......................................................................................................................................................TGCAGACCTGCAGAATCCGGAG..............................................22130.3850100000400
......................................................................................................................................................TGCAGACCTGCAGAATCCGGAGAATCTT........................................28130.3850400001000
.....................................................................................................................................................TTGCAGACCTGCAGAATCCGGAGAAA...........................................26110.3640000000400
...............................AAGTCTTACCGACTCCTCGTTC.....................................................................................................................................................................2230.3310100000000
.....................................................................................................................................................TTGCAGACCTGCAGAATCCGGAGAA............................................25110.2730300000000
.....................................................................................................................................................TTGCAGACCTGCAGAATCCGGAGAAT...........................................26110.2730200100000
.......................................................................................................................................................GCAGACCTGCAGAATCCGGAGAATCT.........................................26130.2330300000000
........................................................................................................................................................CAGACCTGCAGAATCCGGAGA.............................................21140.2130300000000
...........................................................................................................................................................................GAATCTTTTCCGGCTCTGC............................1950.2010100000000
.....................................................................................................................................................................TCCGGAGAATCTTTTCCGGCTCTGCAGG.........................2850.2010100000000
.....................................................................................................................................................................TCCGGAGAATCTTTTCCGGCTCTGCAGGC........................2950.2010100000000
.....................................................................................................................................................................TCCGGAGAATCTTTTCCGGCTCTGC............................2550.2010100000000
.....................................................................................................................................................TTGCAGACCTGCAGAATCCGGAGT.............................................24110.1820000000200
.....................................................................................................................................................TTGCAGACCTGCAGAATCCGGAGA.............................................24110.1820200000000
......................................................................................................................................................TGCAGACCTGCAGAATCCGGAGAATCC.........................................27130.1520100000100
.......................................................................................................................................................GCAGACCTGCAGAATCCGGAGAA............................................23130.1520100000010
..........................................................................................................................................................GACCTGCAGAATCCGGAGAA............................................20150.1320000011000
.....................................................................................................................................................TTGCAGACCTGCAGAATCC..................................................19110.0910100000000
......................................................................................................................................................TGCAGACCTGCAGAATCCGGAGAAA...........................................25130.0810100000000
.......................................................................................................................................................GCAGACCTGCAGAATCCGG................................................19130.0810100000000
......................................................................................................................................................TGCAGACCTGCAGAATCCGGAGAATA..........................................26130.0810100000000
.......................................................................................................................................................GCAGACCTGCAGAATCCGGAG..............................................21130.0810000000100
......................................................................................................................................................TGCAGACCTGCAGAATCCGGAGAATAA.........................................27130.0810100000000
.......................................................................................................................................................GCAGACCTGCAGAATCCGGAGT.............................................22130.0811000000000
.......................................................................................................................................................GCAGACCTGCAGAATCCGGAGAAT...........................................24130.0810100000000
......................................................................................................................................................TGCAGACCTGCAGAATCCGG................................................20130.0810000000100
........................................................................................................................................................CAGACCTGCAGAATCCGGA...............................................19140.0710100000000
.........................................................................................................................................................AGACCTGCAGAATCCGGAGA.............................................20140.0710000001000
.........................................................................................................................................................AGACCTGCAGAATCCGGAGAATCT.........................................24140.0710100000000
...........................................................................................................................................................ACCTGCAGAATCCGGAGAATT..........................................21160.0610100000000
.............................................................................................................................................................CTGCAGAATCCGGAGAATCT.........................................20170.0610000001000
..............................................................................................................................................................TGCAGAATCCGGAGAATCTT........................................20180.0610100000000
droPer2
TTC----AC-AGTACCCTTCGTATCATGGAGAAGTCTTACCGACTCCTCGTTCAAAACGAGGATGACTTGTGGCCTCTGTTTATTGCTCTC---------------CTCTACCTTGGCCACCTTTCAATCAGCTGTAGGAAGGTGGGGATTGCAGACCTGCAGAATCCGGAGAATCTTTTCCGGCTCTGCAGGCTTGGCTGATACTCATGCTCTGGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................GAAGTCTTACCGACTCCTCGTTC.....................................................................................................................................................................2330.672020000
.......................................................................................TCTC---------------CTCTACCTTGGCCACCTTT.............................................................................................2320.501010000
..............................GAAGTCTTACCGACTCCTCGTT......................................................................................................................................................................2230.331010000
....................................................................................TGCTCTC---------------CTCTACCTTGGC....................................................................................................19200.204040000
......................................................................................................................................GTAGGAAGGTGGGGATGA..................................................................1850.201000001
....................................................................................TGCTCTC---------------CTCTACCTTGGCCAC.................................................................................................22200.153021000
......................................................................................................................................................TGCAGACCTGCAGAATCCGGAGAAT...........................................25200.102200000
......................................................................................................................................................TGCAGACCTGCAGAATCCGG................................................20200.102020000
....................................................................................TGCTCTC---------------CTCTACCTTGGT....................................................................................................19200.102020000
....................................................................................TGCTCTC---------------CTCTACCTTGGCCA..................................................................................................21200.102020000
...................................................................................TTGCTCTC---------------CTCTACCTTGG.....................................................................................................19200.102020000
.......................................................................................TCTC---------------CTCTACCTTGGCCACCTT..............................................................................................22200.051010000
.....................................................................................GCTCTC---------------CTCTACCTTGGCCA..................................................................................................20200.051010000
..........................................................................................................................................................GACCTGCAGAATCCGGAG..............................................18200.051010000
.....................................................................................................................................................TTGCAGACCTGCAGAATCCGGAGAAA...........................................26200.051100000
....................................................................................TGCTCTC---------------CTCTACCTTGGCA...................................................................................................20200.051010000
........................................................................................CTC---------------CTCTACCTTGGCCACCTT..............................................................................................21200.051010000
....................................................................................TGCTCTC---------------CTCTACCTTGGCCACCT...............................................................................................24200.051010000
...................................................................................TTGCTCTC---------------CTCTACCTTGGTA...................................................................................................21200.051010000
....................................................................................TGCTCTC---------------CTCTACCTTGG.....................................................................................................18200.051010000
....................................................................................TGCTCTC---------------CTCTACCTTGGCCACCTT..............................................................................................25200.051010000
....................................................................................TGCTCTC---------------CTCTACCTTGGCCACC................................................................................................23200.051010000
droVir3
T--------------------------------------------CCTTATTTAGAATGA---TCACCTGATTGGTGGCACCGTGCACCTC---------------TTCTACATTCAGAACTTTCCAGTCTTTGGTATGTAGAATTGGGTTGCGTCGCATTGTCA------TTATGTGCTCTGGCTCTATTATGGACGAAGGTGACCACAACCGGGGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
T---------------------------------------------------------------------------------------------------------------------------CCAGTCGTTTGTCGGCAAGTTCGGGTTGAATCTTGTTAGCAATTCGAGAATGTCATTGGACTCGGATGGCGTTTCCGGTAGCCAAGCTGTAGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CCC----TT-GGCGGCTT---------CAATTGGGGCTAGCGATTCCTTGTTAAGAATCAGCACTGCCTGATTTGTTGGCCCCTCGGTGGC---------------CTCAATCTTCACCACCCTCCAGTCTTGGGTGGGGAGAGAGGGGTTGCAGAGTTGCAGAAGGTTAAGCACTTGGTCCGGCTCCTTTAGGGAAGCCGGGATCCAGATGCGTGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................TTGCAGAAGGTTAAGCACTTGGT......................................23170.06101
...........................................................................................................TCAATCTTCACCACCCTCC............................................................................................19200.05110

Generated: 05/15/2015 at 03:25 PM