dan_2880

Name	Class	Family	Strand
Hoana1	DNA	hAT-hobo	+
Helitron-2N1_DVir	RC	Helitron	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAGGAGATGAACGCCAATGAGTCGCGTGGAAACTTCTTCCGGCGAAGACGGTAAGTTCACAAACAATGAATTAATTTATGAATTAAATATTCTTGCAAAGTGTACTATAATTTTGGTCAAAAGTGGCCTATACAAAGTAGACAGTTCCGAGCCTATAAAAAATATATTCTTGATCAGGATCACCTGCTGAGGTGATATACAGATGTCCGTCTATCTCTTATAGCGGCCAACGATGCCTATATCTTGACCAA ************************************************(((..........(((.((((..(((((.....))))))))))))....((.((((........(((((....))))).......)))).)).....((((..((((.....))))..))))......(((((((....))))))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V055 head	V106 head
...................AGTCGCGTGGAAACTTCTTCCGGC................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0
.........AACGCCAATGAGTCGCGTGGAAAC..........................................................................................................................................................................................................................	24	0	1	1.00	1	0	0	1
....AGATGAACGCCAATGAGTC....................................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0
............................................................................................................................................................................................................GCCCGTCTATCTCTTACAGCAGC........................	23	3	1	1.00	1	0	1	0
................................................................................AATTAAAGATTCTGGCAAA........................................................................................................................................................	19	2	11	0.09	1	1	0	0
...........................................................................................................................................................TAAAAAATATATTCTGGATT............................................................................	20	2	17	0.06	1	0	1	0
........................................................................................................CTAGAATTTTGGTCAAAAGTG..............................................................................................................................	21	1	20	0.05	1	1	0	0

TTCCTCTACTTGCGGTTACTCAGCGCACCTTTGAAGAAGGCCGCTTCTGCCATTCAAGTGTTTGTTACTTAATTAAATACTTAATTTATAAGAACGTTTCACATGATATTAAAACCAGTTTTCACCGGATATGTTTCATCTGTCAAGGCTCGGATATTTTTTATATAAGAACTAGTCCTAGTGGACGACTCCACTATATGTCTACAGGCAGATAGAGAATATCGCCGGTTGCTACGGATATAGAACTGGTT ************************************************(((..........(((.((((..(((((.....))))))))))))....((.((((........(((((....))))).......)))).)).....((((..((((.....))))..))))......(((((((....))))))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	V039 embryo	M058 embryo
......................................................................................................................................................................................................TGAATACAGGCAGATTGAGAAT...............................	22	3	1	1.00	1	1	0	0
......................................................................................................................................................................................................TGTATACAGGGAGATTGAGAAT...............................	22	3	2	0.50	1	1	0	0
..............................................................................................................................................................................................................................CGCCGGTAGGTACGGATA...........	18	2	3	0.33	1	1	0	0
.......................................................................ATTAAATGCTTAATTCATAA................................................................................................................................................................	20	2	5	0.20	1	0	1	0
............................................................................................CCCGTTTCACAAGATATTAAA..........................................................................................................................................	21	3	11	0.09	1	0	0	1
.......................CGCACCTTTGAAGGAGGGA.................................................................................................................................................................................................................	19	3	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13340:3440466-3440716 -	dan_2880	AAGGAGATGAACGCC--AATGAGTCGCGTG-------------------------------------------------------------GAAACTTCTTCCGGCGAAGACGGTAAGT-------TC--------------ACAAA-----------------------------CAATGAATTAA-TTTATGAATTAAATATTC-----TTGCAA------AGTGTACTATAATTTTGGTCAAAA-----GTGG--CCTATACA---AAGTAGACAGTTCCGAGCCTATAAAAA--ATATATTCTTGATCAGGATCACCTGCTGAGGTGATATACAGATGTCCGTCTATCTCTTATAGCGGCCAACGATGCCTAT-ATCTTGACCAA
droBip1	scf7180000395352:17492-17712 +		GAGCAGA-A--AACC--AGTT---G--GA-------GTCAATTG----GAG-------------------------ATCGTGCGGGAGAAAATAAT-------------------ACAT----TTA--TAATAAATTAATAC------------------------------------AGATA------TTTTAATTTTTATACCC-----TTGCGG------AGTGTATTATAATTTTGTCTAAAA-----GTGT--GCAACGCTGTGAAGGAGACATCTCCGACACTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTC-------------------------------------
droKik1	scf7180000301661:4172-4376 +		AAGGGTATCAAAGTG--A--------AAAA-------------------------------------------------------------ATAATTTTTTTCAATGAAAA----CAAT----------------TT-----TTAAA-----------------------------CAAAAATTTGT--ATTTAATTTTTATACCC-----TTGCA--------GGGTATTATAATTTCAGTCAGAA-----GTTT--GCAACGCAGTGAAGGAGATGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAAAAGCCGAGTCGATCTAGCCATGTCCGTCTGTC-------------------------------------
droFic1	scf7180000454146:30180-30389 +		CACCAGGTGACAGCC--AG-AACTGCAGGG-------------------------------------------------------------ATAATTTGATTTCACACATT----GA-----------C-----GTCAATGC------------------------------------GTACATT----------TTATTATACCC-----TTGCAGAGCAAAAGGGTATTATAATTTCAGTCAGAA-----GTTT--GCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGAATCACGAGCAGAATCGAAATATGTATGTACGTCTGTC-------------------------------------
droEle1	scf7180000490239:13878-14086 -		AGGAAACAA--------------------------------AAA----GAA-------------------------GTCGCACGGGG--------CTAAATCTGGCGAATACGGAG-GTTGTT---CG--------------ATGGT-----------------------------ATTT---------ATGGAGTTTTTATACCC-----TTGCAG------AGGGTATTATAATTTCAGTCAGAA-----GTTT--GCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAGGCGAGTCGATTTAGCCATGTCCGTCTGTC-------------------------------------
droRho1	scf7180000779684:23039-23252 +		GGTAA--TAAATCCC--AACGAACCAACAAAAAATTAA---AAACAACGAAGATGTACTAAGTATATAAACT----------------------------------------------------------------------------------------------------------TCGGA-------TTCTATTTTTATACCC-----TTGCAG------AGGGTATTATAATTTTGGTCAAAA-----GTGT--GCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGTC-------------------------------------
droBia1	scf7180000301468:680581-680792 -		GAAAGATTAGGGGTT--AA-CAATTGAGAA-------------------------------------------------------------ATAATTATTTCCAACACTAT----AAAG----------------TC-----TGAAG-----------------------------CACTTA--TAT-TTTCTTATTTTTATACTC-----TTGCAG------A-GGTATAATAATTTTAGTCAGAA-----GTTT--GCAACGCAGTTAAGGAGGCGTTTCCGATCCCATAAAGTATATATATTCTTGATCAGCGTCACTAGATGAGTCGATCTAACCATGTCCGTCTGTC-------------------------------------
droTak1	scf7180000415386:467579-467803 +		AATGGCATGAATTCCGAAATAATTCAAACG-------------------------------------------------------------ACAATTTCCTTTGAAGAAGA----GG----------------------------------AGTTCATCATTTTGTGATTAAATCTGCCTGAATT----------TTATTATACCC-----TTGCAG------AGGGTATTATAATTTTGGTCAGAA-----GTTT--GTAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCTGTC-------------------------------------
droEug1	scf7180000409615:458122-458301 -		TAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA---TATATGTTTAATACCC-----TTGCTG------AGGGTATTATACCTTTGGTCAGAA-----GTTT--GTAACGCAGTGAAGGAGACGTTTCCGACGCCATAAAGTGTATATATTCTTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTTA---CAACACTGTCTCT-ATACTG-----
dm3	chrX:22239811-22239983 +		CGAGTACAG--------------------------------CAA-------------------------------------------------------------------------GC-------GA--------------CCTACCAAAGA-----------------------TTTTAAG-------TTCAATTAAAATAGTT----------GGGTAAAGGTGTATACTAGATTCGTTCAAAA-----ATGTATGTAAC----AGAAGGAAGCGTTTCCGACCCTATAAATTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTACCCATATCCGTC-----------------------------------------
droSim2	x:13424112-13424279 +		TTTA--------------------------------------------------------------TAAACTTTAA----------------------------------------------------C-----ATTCAACT------------------------------------ATGTATTAT----------AATGTCTTT-----TTTAAA------AGGGTATACTAGATTCGTTTAAAA-----GTAT--GTAACAAGCAGAAGGAAGCGTTTCCGACCATATAATGTAAATATATTCTTGATCAGGGTCAACAGCCGAGACGATCTGGCCATGTCCATCTGT--------------------------------------
droSec2	scaffold_20:810482-810647 +		TTTA--------------------------------------------------------------TAAACTTTAA----------------------------------------------------C-----ATTCAACT------------------------------------ATGTAT-------------AATGTCTTT-----TTTAAA------AGGGTATACTAGATTTGTTTAAAA-----GTAT--GTAACAAGCAGAAGGAAGCGTTTCCGACCATATAATGTAAATATATTTTTGATCAGGGTCAACAGCCGAGACGATCTGGCCATGTCCATCTGTC-------------------------------------
droYak3	v2_chrUn_6911:12389-12565 +		CGGATA-------------------------------------------------------------------------------------------------------------------TT---TC--------------ATAAT-----------------------------CTGTAAATT--------GGTTTTTATACCCGTTACTCGTAGAGTAAAACGGTATACTAGATTCGTTGAAAA-----GTAT--GTATCAGGCAGAAGGAAGGGTTTCCGACCATATAAAGAATATATATTCTTGATCAGGACCAATAGCCGAGTCGATATGACCATGTCCGTCTGTCT------------------------------------
droEre2	scaffold_4770:345648-345836 +		TCCGCCGAA--AACT---------------------GT---CAA-------------------------------------------------------------------------G-----------------ACCACA----------TA--------------------------TTTATTATT-TAATTA--ATTATGGCCGTTACTCGTAGAGTC--AGGGTATAATAGATTCTTTGAAAA-----GTGT--GTAACATGAAAGAGAACGCGTTTCCGACTCTATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCT------------------------------------
dp5	XL_group1e:3398356-3398439 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAACATTTCCGAGCCCATAAAGAATATATATTCTTGATCAGCATCAATTGCAGAGTCAATATAGCCATGTCTGTCCGTCT------------------------------------
droPer2	scaffold_77:22522-22662 -		GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTAGAATTGTGGTAAAAATGGATGTGT--GTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAAGTGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGCTAGAGTAACCAA----------------------
droWil2	scf2_1100000003744:632-843 +		TTTT--------------------------------------------------------------TTAGCGATAA----------------------------------------------------C-----TTGAAACT------------------------------------TAATACAATT-TAATAATTTTTATACCC-----TTGCAG------AGGGTACTATAAAATTGGTCAGAT-----GTTT--GTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGAATGAGAAGCGGAGTCGATATGGCCATGTCCGTCTGTCCGTCCGTCCGTCCGACTGTGCAAATCAACTTGAC---
droVir3	scaffold_10446:215-425 +		ATGAATAGCA------------------------------------------------------TATAGGCTTTTGCTCTTGCGAA-----AGGACGGTCCCTATTG-------------------CC--------------ATAAA-----------------------------TAATAAATTGA--AATATATTTTTATACCC-----TTGCAG------AGGGTATTATAATTTTGTCGTGAA-----ATGT--GTAACGCATAGAAGGAGACATCTCCGACCCCATAAAGTATATATATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTC-------------------------------------
droMoj3	scaffold_6540:20108345-20108410 -		AAAGAGATGAATGCC--AATGAATCACGCG-------------------------------------------------------------GCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCAGACGACGTCGGTAAGTCCCAAAATGA------------------------------------
droGri2	scaffold_15203:6079932-6080086 -		TTTT--------------------------------------------------------------CAAATGCTT----------------------------------------------------------------------------------------------------------GTTTAA-CGCAATACTTAAATATCC-----TTAAAA------CGGGGATAATGGTTTTGTGCAAAA-----GTAG------------GAAGGAAGCATCTCCAATCCCATAAAGAAAATATAGTCTTGATCAGCATCAAGAGACGAGTCGATATAGCCATGTCCGTCTGTC-------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

AAGGAGATGAACGCC--AATGAGTCGCGTG-------------------------------------------------------------GAAACTTCTTCCGGCGAAGACGGTAAGT-------TC--------------ACAAA-----------------------------CAATGAATTAA-TTTATGAATTAAATATTC-----TTGCAA------AGTGTACTATAATTTTGGTCAAAA-----GTGG--CCTATACA---AAGTAGACAGTTCCGAGCCTATAAAAA--ATATATTCTTGATCAGGATCACCTGCTGAGGTGATATACAGATGTCCGTCTATCTCTTATAGCGGCCAACGATGCCTAT-ATCTTGACCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................AGTCGCGTG-------------------------------------------------------------GAAACTTCTTCCGGC...........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........AACGCC--AATGAGTCGCGTG-------------------------------------------------------------GAAAC.....................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
....AGATGAACGCC--AATGAGTC............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0

droBip1

GAGCAGA-A--AACC--AGTT---G--GA-------GTCAATTG----GAG-------------------------ATCGTGCGGGAGAAAATAAT-------------------ACAT----TTA--TAATAAATTAATAC------------------------------------AGATA------TTTTAATTTTTATACCC-----TTGCGG------AGTGTATTATAATTTTGTCTAAAA-----GTGT--GCAACGCTGTGAAGGAGACATCTCCGACACTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTC-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAGGGTATCAAAGTG--A--------AAAA-------------------------------------------------------------ATAATTTTTTTCAATGAAAA----CAAT----------------TT-----TTAAA-----------------------------CAAAAATTTGT--ATTTAATTTTTATACCC-----TTGCA--------GGGTATTATAATTTCAGTCAGAA-----GTTT--GCAACGCAGTGAAGGAGATGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAAAAGCCGAGTCGATCTAGCCATGTCCGTCTGTC-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CACCAGGTGACAGCC--AG-AACTGCAGGG-------------------------------------------------------------ATAATTTGATTTCACACATT----GA-----------C-----GTCAATGC------------------------------------GTACATT----------TTATTATACCC-----TTGCAGAGCAAAAGGGTATTATAATTTCAGTCAGAA-----GTTT--GCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGAATCACGAGCAGAATCGAAATATGTATGTACGTCTGTC-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGGAAACAA--------------------------------AAA----GAA-------------------------GTCGCACGGGG--------CTAAATCTGGCGAATACGGAG-GTTGTT---CG--------------ATGGT-----------------------------ATTT---------ATGGAGTTTTTATACCC-----TTGCAG------AGGGTATTATAATTTCAGTCAGAA-----GTTT--GCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAGGCGAGTCGATTTAGCCATGTCCGTCTGTC-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGTAA--TAAATCCC--AACGAACCAACAAAAAATTAA---AAACAACGAAGATGTACTAAGTATATAAACT----------------------------------------------------------------------------------------------------------TCGGA-------TTCTATTTTTATACCC-----TTGCAG------AGGGTATTATAATTTTGGTCAAAA-----GTGT--GCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGTC-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAAAGATTAGGGGTT--AA-CAATTGAGAA-------------------------------------------------------------ATAATTATTTCCAACACTAT----AAAG----------------TC-----TGAAG-----------------------------CACTTA--TAT-TTTCTTATTTTTATACTC-----TTGCAG------A-GGTATAATAATTTTAGTCAGAA-----GTTT--GCAACGCAGTTAAGGAGGCGTTTCCGATCCCATAAAGTATATATATTCTTGATCAGCGTCACTAGATGAGTCGATCTAACCATGTCCGTCTGTC-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AATGGCATGAATTCCGAAATAATTCAAACG-------------------------------------------------------------ACAATTTCCTTTGAAGAAGA----GG----------------------------------AGTTCATCATTTTGTGATTAAATCTGCCTGAATT----------TTATTATACCC-----TTGCAG------AGGGTATTATAATTTTGGTCAGAA-----GTTT--GTAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCTGTC-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA---TATATGTTTAATACCC-----TTGCTG------AGGGTATTATACCTTTGGTCAGAA-----GTTT--GTAACGCAGTGAAGGAGACGTTTCCGACGCCATAAAGTGTATATATTCTTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTTA---CAACACTGTCTCT-ATACTG-----	Size	Hit Count	Total Norm	Total
No Reads

dm3

CGAGTACAG--------------------------------CAA-------------------------------------------------------------------------GC-------GA--------------CCTACCAAAGA-----------------------TTTTAAG-------TTCAATTAAAATAGTT----------GGGTAAAGGTGTATACTAGATTCGTTCAAAA-----ATGTATGTAAC----AGAAGGAAGCGTTTCCGACCCTATAAATTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTACCCATATCCGTC-----------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................................................................................................................................AATTAAAATAGTT----------GGGTAAAG.....................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCG..........................................................	25	20	3.70	74	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	7	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGA.........................................................	26	20	2.60	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	24	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTC...........................................................	24	20	2.20	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................TACCAAAGA-----------------------TTTTAAG-------TTCAATTAAAA............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TAAC----AGAAGGAAGCGTTTCCG.........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GGGTAAAGGTGTATACTAGATTCG.....................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAG.............................................................	22	20	0.85	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGATC.......................................................	24	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAAT....................................................................	21	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGATCTACC...................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTTA--------------------------------------------------------------TAAACTTTAA----------------------------------------------------C-----ATTCAACT------------------------------------ATGTATTAT----------AATGTCTTT-----TTTAAA------AGGGTATACTAGATTCGTTTAAAA-----GTAT--GTAACAAGCAGAAGGAAGCGTTTCCGACCATATAATGTAAATATATTCTTGATCAGGGTCAACAGCCGAGACGATCTGGCCATGTCCATCTGT--------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................TAT--GTAACAAGCAGAAGGAAGCGTT.............................................................................................................	25	5	9.00	45	0	0	0	0	0	0	2	3	2	9	29	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TAT--GTAACAAGCAGAAGGAAGCGT..............................................................................................................	24	6	4.17	25	0	0	0	1	0	0	0	0	0	0	24	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAAA-----GTAT--GTAACAAGCAGAAGGA...................................................................................................................	24	6	3.83	23	0	0	0	0	0	0	15	0	7	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................GGGTATACTAGATTCGTTTAAAA-----G........................................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TAT--GTAACAAGCAGAAGGAAGCG...............................................................................................................	23	6	0.67	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
......................................................................................................................................................................................................................AAA------AGGGTATACTAGATTCGT....................................................................................................................................................	21	20	0.40	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
................................................................................................................................................................................................................................GGGTATACTAGATTCGTTTAAAA-----.........................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AAATATATTCTTGATCAGGGCT.......................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TACTAGATTCGTTTAAAA-----GTAT--GT.................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AA-----GTAT--GTAACAAGCAGAAGGAAGCGTT.............................................................................................................	28	5	0.20	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................T--GTAACAAGCAGAAGGAAGCGTT.............................................................................................................	23	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................AGCAGAAGGAAGCGTT.............................................................................................................	16	10	0.20	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAAA-----GTAT--GTAACAAGCAGAAGG....................................................................................................................	23	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAAA-----GTAT--GTAACAAGCAGAAGGAA..................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAAA-----GTAT--GTAACAAGCAGAAGGAAG.................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAAA-----GTAT--GTAACAAGCAGAAGGAT..................................................................................................................	25	12	0.17	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TAAA------AGGGTATACTAGATTCGT....................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAAA-----GTAT--GTAACAAGCA.........................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................TAGATTCGTTTAAAA-----GTAT--GTAA...............................................................................................................................	23	7	0.14	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TAT--GTAACAAGCAGAAG.....................................................................................................................	17	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................TAGATTCGTTTAAAA-----G........................................................................................................................................	16	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAAA-----GTAT--GTAACAAGCAGAAGGAAC.................................................................................................................	26	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AAGCAGAAGGAAGCGT..............................................................................................................	16	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................AGCAGAAGGAAGCGT..............................................................................................................	15	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................AA------AGGGTATACTAGATTCGT....................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AAGCGTTTCCGACCATA...................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AAGGAAGCGTTTCCGA........................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................AAA------AGGGTATACTAGATT.......................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGGGTATACTAGATTCGT....................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTTA--------------------------------------------------------------TAAACTTTAA----------------------------------------------------C-----ATTCAACT------------------------------------ATGTAT-------------AATGTCTTT-----TTTAAA------AGGGTATACTAGATTTGTTTAAAA-----GTAT--GTAACAAGCAGAAGGAAGCGTTTCCGACCATATAATGTAAATATATTTTTGATCAGGGTCAACAGCCGAGACGATCTGGCCATGTCCATCTGTC-------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................................................AACAAGCAGAAGGAAGCGTT.............................................................................................................	20	20	0.05	1	0	0	0	1
.........................................................................................................................................................................................................................................................................GCAGAAGGAAGCGTTTCCGACCATA...................................................................................................	25	20	0.05	1	1	0	0	0

droYak3

CGGATA-------------------------------------------------------------------------------------------------------------------TT---TC--------------ATAAT-----------------------------CTGTAAATT--------GGTTTTTATACCCGTTACTCGTAGAGTAAAACGGTATACTAGATTCGTTGAAAA-----GTAT--GTATCAGGCAGAAGGAAGGGTTTCCGACCATATAAAGAATATATATTCTTGATCAGGACCAATAGCCGAGTCGATATGACCATGTCCGTCTGTCT------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................................................................................................................................TTCTTGATCAGGACCAATAGCCGA..............................................................	24	20	1.00	20	0	20	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTATCAGGCAGAAGGAAGGGTTTCCG.........................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTATCAGGCAGAAGGAAGGGTTTCC..........................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTATCAGGCAGAAGGAAGGGTTTCCGACC......................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TCTTGATCAGGACCAATAGCCGAGTC...........................................................	26	20	0.45	9	0	0	7	2	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGGGTTTCCGACCA.....................................................................................................	26	20	0.45	9	0	9	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TCTTGATCAGGACCAATAGCCGAG.............................................................	24	20	0.40	8	0	8	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TCTTGATCAGGACCAATAGCCGAGTCG..........................................................	27	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGACCAATAGCCGAGT............................................................	28	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTGATCAGGACCAATAGCCGAGTC...........................................................	24	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TT--------GGTTTTTATACCCGTTACTCGTA.............................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CAGAAGGAAGGGTTTCCGACCATA...................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TTCTTGATCAGGACCAATAGCCGAGT............................................................	26	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................GCAGAAGGAAGGGTTTCCGACCA.....................................................................................................	23	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTGATCAGGACCAATAGCCGAGT............................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................T--GTATCAGGCAGAAGGAAG.................................................................................................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TCGTAGAGTAAAACGGTATAC.............................................................................................................................................................	21	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GCAGAAGGAAGGGTTTCCGACCATA...................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGGGTTTCCGACG......................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CTTGATCAGGACCAATAGCCGAGT............................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................ATACCCGTTACTCGTAGAG..........................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CTTGATCAGGACCAATAGCCGAG.............................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TCTTGATCAGGACCAATAGCA................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GAAGGAAGGGTTTCCGACC......................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TGATCAGGACCAATAGCCGAGT............................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GGCAGAAGGAAGGGTTTCC..........................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GAAGGAAGGGTTTCCGACCATA...................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGACC.......................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATATGACCATGTCCGT..........................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GGACCAATAGCCGAGTCGATATGACCA.................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GCAGAAGGAAGGGTTTCCGACCAT....................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TCCGCCGAA--AACT---------------------GT---CAA-------------------------------------------------------------------------G-----------------ACCACA----------TA--------------------------TTTATTATT-TAATTA--ATTATGGCCGTTACTCGTAGAGTC--AGGGTATAATAGATTCTTTGAAAA-----GTGT--GTAACATGAAAGAGAACGCGTTTCCGACTCTATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCT------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGATCTGG....................................................	25	20	0.25	5	0	0	0	0	0	0	5
.......................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCTGGCC..................................................	28	20	0.05	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATCTG.....................................................	21	20	0.05	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................AGTCGATCTGGCCATGTCCGT..........................................	21	20	0.05	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGATC.......................................................	24	20	0.05	1	0	0	0	0	0	1	0

dp5

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAACATTTCCGAGCCCATAAAGAATATATATTCTTGATCAGCATCAATTGCAGAGTCAATATAGCCATGTCTGTCCGTCT------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATTGCA................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGC..........................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTAGAATTGTGGTAAAAATGGATGTGT--GTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAAGTGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGCTAGAGTAACCAA----------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAAGTGCCGAGTCG..........................................................	25	4	0.25	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................AATTGTGGTAAAAATGGATGTG......................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAAGTGCCGAG.............................................................	22	4	0.25	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................AGTCGATTGAGCCATGTCTGT..........................................	21	20	0.15	3	0	0	0	0	0	3
..............................................................................................................................................................................................................................................................................................................................................GAGCCATGTCTGTCTGTCCGC..................................	21	15	0.07	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................TTGTGGTAAAAATGGATGTGT--GT.................................................................................................................................	23	16	0.06	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................GTGGTAAAAATGGATGTGT--G..................................................................................................................................	20	18	0.06	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCG...................................	21	20	0.05	1	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................TGT--GTAACGTCCAGAAGGAATCGTTT............................................................................................................	26	20	0.05	1	0	1	0	0	0	0

droWil2

TTTT--------------------------------------------------------------TTAGCGATAA----------------------------------------------------C-----TTGAAACT------------------------------------TAATACAATT-TAATAATTTTTATACCC-----TTGCAG------AGGGTACTATAAAATTGGTCAGAT-----GTTT--GTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGAATGAGAAGCGGAGTCGATATGGCCATGTCCGTCTGTCCGTCCGTCCGTCCGACTGTGCAAATCAACTTGAC---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................TT--GTAACGCACAGAAGGAGACGTTTC...........................................................................................................	26	20	0.55	11	0	11	0	0	0
...................................................................................................................................................................................................................................TACTATAAAATTGGTCAGAT-----GTTT--GT.................................................................................................................................	26	11	0.36	4	0	0	0	4	0
........................................................................................................................................................................................................................................TAAAATTGGTCAGAT-----GTTT--GTAACGC............................................................................................................................	26	20	0.35	7	0	0	0	7	0
........................................................................................................................................................................................................................................................................................................................................................CGTCTGTCCGTCCGTCCGTCC........................	21	20	0.20	4	0	0	4	0	0
..................................................................................................................................................................................................................................................................GTAACGCACAGAAGGAGACGT..............................................................................................................	21	20	0.15	3	0	3	0	0	0
.....................................................................................................................................................................................................................................................AT-----GTTT--GTAACGCACAGAAGGAGACGT..............................................................................................................	27	20	0.15	3	0	0	0	3	0
..............................................................................................................................................................................................................................................................................................................................................TGGCCATGTCCGTCTGTCCGTCC................................	23	8	0.13	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................GTCTGTCCGTCCGTCCGTCCGA......................	22	8	0.13	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................TGGCCATGTCCGTCTGTCCG...................................	20	10	0.10	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CCATGTCCGTCTGTCCGTC.................................	19	20	0.10	2	0	0	0	2	0
...............................................................................................................................................................................................................................................................T--GTAACGCACAGAAGGAGACGT..............................................................................................................	22	20	0.10	2	0	0	2	0	0
...................................................................................................................................................................................................................................TACTATAAAATTGGTCAGAT-----GTTT--G..................................................................................................................................	25	11	0.09	1	0	0	0	0	1
..TT--------------------------------------------------------------TTAGCGATAA----------------------------------------------------C-----TTGAAACT------------------------------------...................................................................................................................................................................................................................	21	11	0.09	1	0	1	0	0	0
...................................................................................................................................................................................................................................TACTATAAAATTGGTCAGAT-----G........................................................................................................................................	21	15	0.07	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTCCGTCCGTCCGT..........................	22	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTCCGTCCGTC.........................	18	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................GGTCAGAT-----GTTT--GTAACGCACAGA.......................................................................................................................	24	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................CAGAAGGAGACGTTTCCGAC.......................................................................................................	20	20	0.05	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................GTAACGCACAGAAGGAGACGTTTC...........................................................................................................	24	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGAA.........................................................................	20	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................TAATTTTTATACCC-----TTGCAG------AGGG..................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................TGGTCAGAT-----GTTT--GTAACGCACA.........................................................................................................................	23	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................CGCACAGAAGGAGACGTTTCC..........................................................................................................	21	20	0.05	1	0	0	0	0	1
....................................................................................................................................................................................................................................................GAT-----GTTT--GTAACGCACAGAAG.....................................................................................................................	21	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................CACAGAAGGAGACGTTTCCGACCCCATA.................................................................................................	28	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................AGAT-----GTTT--GTAACGCACAGAAGG....................................................................................................................	23	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGTCCGTCCGTCC........................	23	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................T-----GTTT--GTAACGCACAGAAGGAGAC................................................................................................................	24	20	0.05	1	0	1	0	0	0

droVir3

ATGAATAGCA------------------------------------------------------TATAGGCTTTTGCTCTTGCGAA-----AGGACGGTCCCTATTG-------------------CC--------------ATAAA-----------------------------TAATAAATTGA--AATATATTTTTATACCC-----TTGCAG------AGGGTATTATAATTTTGTCGTGAA-----ATGT--GTAACGCATAGAAGGAGACATCTCCGACCCCATAAAGTATATATATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTC-------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................................AA-----ATGT--GTAACGCATAGAAGGAGACA...............................................................................................................	26	20	19.15	383	0	0	39	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	317	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AA-----ATGT--GTAACGCATAGAAGGAGACAT..............................................................................................................	27	20	1.60	32	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AA-----ATGT--GTAACGCATAGAAGGAG..................................................................................................................	23	20	1.35	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AA-----ATGT--GTAACGCATAGAAGGAGA.................................................................................................................	24	20	1.15	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AA-----ATGT--GTAACGCATAGAAGGAGAC................................................................................................................	25	20	0.85	17	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAGCCG...............................................................	27	20	0.70	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAGCC................................................................	26	20	0.60	12	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CTTGCGAA-----AGGACGGTTG................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAACAGCCGAGTCG..........................................................	25	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GAA-----ATGT--GTAACGCATAGAAGGAGACA...............................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................T--GTAACGCATAGAAGGAGAC................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................G------AGGGTATTATAATTTTGTCG..................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTAACGCATAGAAGGAGACA...............................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TATTCTTAATCAGCATCAACAGCCG...............................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................ATATTCTTAATCAGCATCAACAGC.................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................ATATTCTTAATCAGCATCAACA...................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TCAACAGCCGAGTCGATATAGCCA.................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GAA-----ATGT--GTAACGCATAGAAGGAGA.................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GAA-----ATGT--GTAACGCATAGAAGGAGAC................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................ATATTCTTAATCAGCATCAACAG..................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................ATATAGCCATGTCCGTCTGTC-------------------------------------	21	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AAGGAGACATCTCCGACCCCA...................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTAACGCATAGAAGGAGACATCTCCGACC......................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAG..................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CGATATAGCCATGTCCGTCTG.......................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AACGCATAGAAGGAGACATCTC...........................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCGAT........................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAACAGCCGAGTCGATATAGC...................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................A-----ATGT--GTAACGCATAGAAGGAGAG................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TCAACAGCCGAGTCGATATAGCCATGT..............................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTGCAG------AGGGTATTATAATTTTGTCG..................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TAACGCATAGAAGGAGACATCTCC..........................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................A-----ATGT--GTAACGCATAGAAGGAGACA...............................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CGATATAGCCATGTCCGTCT........................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TCTTAATCAGCATCAACAGCCGAGT............................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TATTCTTAATCAGCATCAACAGCCGAG.............................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACA...................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTAACGCATAGAAGGAGACATCTCCGAC.......................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TAATCAGCATCAACAGCCGAGTCG..........................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GAA-----ATGT--GTAACGCATAGAAG.....................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCGATA.......................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TCTTAATCAGCATCAACAGCCG...............................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ATTCTTAATCAGCATCAACAG..................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGAA-----ATGT--GTAACGCATAGAAGGAGACA...............................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GTGAA-----ATGT--GTAACGCATAGAAGGAG..................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................ATTATAATTTTGTCGTGAA-----ATGT--GTAA...............................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ATCAGCATCAACAGCCGAGTCGATAT......................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................T--GTAACGCATAGAAGGAGACAT..............................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGTCGTGAA-----ATGT--GTAACGCATA.........................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATATAGCCATGTCCG...........................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................TAACGCATAGAAGGAGACATC.............................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TAATCAGCATCAACAGCCGAGTCGA.........................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CCC-----TTGCAG------AGGGTATTATAATTTTGTCG..................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CGATATAGCCATGTCCGTC.........................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................TATATATATTCTTAATCAGCATCAACA...................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCGATATAG....................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CAGCATCAACAGCCGAGTCGATA.......................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGAA-----ATGT--GTAACGCATAGAAGG....................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................ACGCATAGAAGGAGACATCTCCG.........................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TTCTTAATCAGCATCAACAGCCG...............................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AA-----ATGT--GTAACGCATAGAAGGAGACATC.............................................................................................................	28	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................GCAG------AGGGTATTATAATTTTGTCGT.................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TCAACAGCCGAGTCGATATAGCCAT................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TAATCAGCATCAACAGCCGAGTCGAT........................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

AAAGAGATGAATGCC--AATGAATCACGCG-------------------------------------------------------------GCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCAGACGACGTCGGTAAGTCCCAAAATGA------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TTTT--------------------------------------------------------------CAAATGCTT----------------------------------------------------------------------------------------------------------GTTTAA-CGCAATACTTAAATATCC-----TTAAAA------CGGGGATAATGGTTTTGTGCAAAA-----GTAG------------GAAGGAAGCATCTCCAATCCCATAAAGAAAATATAGTCTTGATCAGCATCAAGAGACGAGTCGATATAGCCATGTCCGTCTGTC-------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_2880

scaffold_13340:3440516-3440666 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads