dan_286

Antisense to intron [Dana\GF21001-in]; Antisense to exon [dana_GLEANR_4233:3]; Antisense to CDS [Dana\GF21001-cds]

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-
(CTG)n	Simple_repeat	Simple_repeat	+
(TGG)n	Simple_repeat	Simple_repeat	+

GTGCCCGAATTGTTGTTGCAGCTGCCGTGGATGGGCTTCAGCTTGTGAAGCTTATGCGACTGCTGTGGCTGCGATTGCAACTGCTGCTGCTGCTGCTGCTGCTGGGAGTGGTGGTGATGGTGGTGGTGGTGGTGGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTCTGGATCCTCTCCCGCCCGA *************************************************************..((.((((.(((((.(((((((.((((((((((.((...)).)))))))))).))))))).))))).)))).))...............**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	V055 head	M044 female body	M058 embryo
.......................................................................................................................GTGGTGGTGGTGGTGGGCG...................................................	19	0	5	1.40	7	7	0	0	0
...............CTGCAGCTGCCGTGCGTGGGCTT.......................................................................................................................................................	23	3	2	0.50	1	0	1	0	0
.......................................................................................................................GTGGTGGTGGTGGTGGGCGG..................................................	20	0	2	0.50	1	1	0	0	0
......................................................................................................................GGTGGTGGTGGTGGTGGGC....................................................	19	0	12	0.33	4	4	0	0	0
.............................................................................................................GGTGGTGATGGTGGTGGTGGTGGT........................................................	24	0	6	0.17	1	1	0	0	0
.........................................................................ATTGGAAATGCTGCTGCTGCT...............................................................................................	21	2	6	0.17	1	0	0	1	0
.................................................................................................................GTGATGGTGGTGGTGGTGGTGGTC....................................................	24	1	8	0.13	1	1	0	0	0
.......................................................................................................................GTGGTGGTGGTGGTGCGCGG..................................................	20	1	9	0.11	1	1	0	0	0
..........................................GTGTGAAGCTGATGCGACC................................................................................................................................	19	3	13	0.08	1	0	0	0	1
.......................................................................................................................GTGGTGGTGGTGGTGGGC....................................................	18	0	14	0.07	1	1	0	0	0
...................................................................................................................GATGGTGGTGGTGGTGGTGGGT....................................................	22	1	14	0.07	1	1	0	0	0
..........................................................................TTGGAAATGCTGCTGCTGCT...............................................................................................	20	2	20	0.05	1	0	0	1	0
......................................................................................................................GGGGGTGGTGGTGGTGGGC....................................................	19	1	20	0.05	1	1	0	0	0
.............................................................................................................GGTGGTGTTGGTGGTGGTGGTGGTG.......................................................	25	1	20	0.05	1	1	0	0	0
..............................................................................AACTGCTGCTGCTGCTGCT............................................................................................	19	0	20	0.05	1	0	0	1	0

#####################################################################################################---------------------------------------------------------------------------------------- CACGGGCTTAACAACAACGTCGACGGCACCTACCCGAAGTCGAACACTTCGAATACGCTGACGACACCGACGCTAACGTTGACGACGACGACGACGACGACGACCCTCACCACCACTACCACCACCACCACCACCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGACCTAGGAGAGGGCGGGCT **********************************..((.((((.(((((.(((((((.((((((((((.((...)).)))))))))).))))))).))))).)))).))...............*************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V106 head	V105 male body
..................................CGAAGTCGAACACTTCGAATAC.....................................................................................................................................	22	0	1	1.00	1	1	0	0
.......................CGGCACCTACCCGAAGTCGAA.................................................................................................................................................	21	0	1	1.00	1	1	0	0
............................................................................................GACGACGACGACGCTCACCA.............................................................................	20	1	14	0.07	1	0	1	0
..............................................................................................CGACGAGGACCCTCACCACCCA.........................................................................	22	3	14	0.07	1	0	1	0
............................................................................CGTTGACGACGAAGGCGACGA............................................................................................	21	2	20	0.05	1	0	0	1
..............................................................................TTGACGACGACGACGACGACGA.........................................................................................	22	0	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13117:1952253-1952441 +	dan_286	GTGCC-----CGAATTGTT--------------------------------------------------------------------------------GTTGCAGCTGCCGT---------------G-GATG---------G-GCTTC------A---GCTTG------T---------------GAAGCTTATGCGACT------GCTGTGGCTGCG------ATTGCAACTGCTGCTGCTGCTGCT---------------GCTGCTGGGAGTGGTGGTGA---------T---------GGT------------GG---TGGTGGTGGTGGGCGG-NNNNNNNNNNNNNNNNNNNNNNNNNTGTTT---------C-------------------TGG---------------------------ATCC-----------------------------------TCTCCCG-CCCGA
droBip1	scf7180000392902:60101-60239 +		TGCCCG----TCGACT--------------------------------------------------------------GTTG---------------------CTGCTGCT---------------GTT-GTT------------GCTGC------------------------------------------------------------AGATGCTGTTGTTGGA---------------G---ATGCAACTGCTGTCG---CTGCTGCTGGAGGTGCAACTGA------------------TGCT---GCT------GCTGTT---G------GGAAGT--------------------------------GG--------------ATGAGGTGGGCGGG---------------------------CTCT-------------------------------------TCTCG-CTGGA
droKik1	scf7180000302634:593772-593935 +		GACTAG------------------------------------------------------------------------ACTGC---------------TG---------T------TGGGGAT---AGTG-------------AGCTTGC------TGGGACATC------T---------------GGGACATTTGC---T------GGTGCTGCT------------GCCGCAGTTGCTGCTGCTGCTGCT---GAT------AGCGCTGCGCCTGTT---GT------TGTTGCTGCTGCTG------------------------------GGCAGT-----------------------------------------------------GGAGGCCGCCGCACGGG-------------------CTCCCCG-------CCTG------------------------GCCG-CACTA
droFic1	scf7180000454050:640273-640461 +		GCCGG---------AAATCGCCGTAGAACTTGGCCAAGCACCGTACTCTCGATGCAATATAGCCGATTTTGCGCAACAATCGC---------------AC----GTCCGC--C---------T---GCTG-------------CAGCTGC------A---------------------------------------------------------------------GTTGCAACTGTTGCTGCTGCTCCT---------------GCTGATGGTGCTGCTGCTGC---TGCTGTTGCTGCTGGTGGC---GGTG-------------------------GT-------------------------TGTTG---------C-------------------TGCTGC---------------------------------------------------------------GCTGCAG-CAAGA
droEle1	scf7180000491193:2687814-2687974 -		ATTGTAGT----------------------------------------------------------------------GGC------------------G---TTGCCGC--C---------T---GAT----GAGGCTGCGGTTGCTGTGGGGACA---------ATGCCAGAGTCAACG---------------------------GTTGCA------------GCAACGGCTGTTGCTGTTGCTGCTGCT------------GCTGATGTTGCTGAAGTTGC------T---------------------------GATGTT---GGTGATGGGTGGC-----------------------------------------------------GAAGGCGGCTGC-----------------------------------------GG---------------------CTCCAA-CCGGA
droRho1	scf7180000766413:36617-36773 +		GTCCCC------------------------------------------------------------------------GTTGT---------------TG---TTG---T------TGC---------T-GGGG---------------------------------------------------GT---------------------GTTGCTGCTGCTGTTGAT---------------G---TTGCTGCTGCTGTT------GTTGCTGTTGCTGCTGTTGC------------------------------------------------------------------------------------TGCTGCTGCTGTTGGGAGGCGT------------------------GTTGTGGG-----CT------GTGGAGCGTTTGGCATTGGGTGGATGGGGGTGCTCCGCCG-CCCGC
droBia1	scf7180000301623:239646-239804 -		ATGAT-----C-------AG-----------------------------------------------------------------CAGCTTGTTGGCCATCTGCTGCTGCTGA---------------T-GGAT------------CTGC------TGGTTGATCTGC---T---------------GATGCAGCTGC---T------GTTGCTGCT---------GCTGCAGATGTT---GCTGCAGCTGTT---GCT------GCTGCTGGGTGAGTT---GC------TGCT---GCTGTTGCT---GGTG------G---T------------------------------------------GTTG---------C-------------------TGCT-----------G----------------------------C--TG----------------------------C-TGG
droTak1	scf7180000415211:46945-47095 +		GCGGGT------------------------------------------------------------------------GGTGC---------------TG---CTG---C------TGCGGGT---GGTG-------------CGACTGG------TGACCC---------------------------ACCTGGTGGTGGT------GATGGTGCAGCGGCG---AGTGCAGCTGCT------------------GGTG---CTGCTGATGTTGCTGCTGCTGC---TGATGTT---------GCT---GCTGCTGCTGG---T------------------------------------------GTTG---------C-------------------TGCTGC---------------------------------------------------------------GCCGCC-GC-CTG
droEug1	scf7180000409182:438225-438375 -		GTGGGT------------------------------------------------------------------------GGTGC---------------TG---CTG---C------TGCGCAT---GGTG-------------CGGCTGG------TGA------------------------------CCCTGGTGGTGAT------GATGATGCAGCGGCG---AGTGCAACTGCTGTTGCTGGTGCT---------------GCTGATGTTGGTGCTGTTGA------------------TGCTGCTGCTGTTGTTGG---T------------------------------------------GTTG---------C-------------------TGCTGC---------------------------------------------------------------GCCGCC-GC-CTG
dm3	chr2R:6877584-6877741 +		GTGCT--GCGCGGAATGTTG-----------------------------------------------------------------CTGTGTGTTGGCTGGTCGCTGCTGCCGC---------------T-GATG---------------------------------------------------CT---------------------GCTGCTGCTACTGTGGCT---------------G---CTACTGCTGCTATT------GCTGCTGTTGCTGCTACTGC------------------------------------------------------------------------------------TGCTGCTGCTCTTGGGCGAATT------------------------GCTGCCGATGTTGCT------G-------T--GG--------------------CCAAGG-GC-CTG
droSim2	2r:7610427-7610580 +		GTGCT--GCGCGGAATGTTG-----------------------------------------------------------------CTGTGTGTTGGCTGGTCGCTGCTGCCGC---------------T-GATG---------------------------------------------------CT---------------------GCTGCTGCTACTGTGGCT---------------G---CTACTGCTGCTGTTG---CTGCTGCTGTTGCTGCTACTGC------------------------------------------------------------------------------------TGCTGCTGCTCTTGGGCGAGTT------------------------GCTGCCGATGTTGCT------G-------T--GG----------------------------C-CAA
droSec2	scaffold_1:4459545-4459698 +		GTGCT--GCGCGGAATGTTG-----------------------------------------------------------------CTGTGTGTTGGCTGGTCGCTGCTGCCGC---------------T-GATG---------------------------------------------------CT---------------------GCTGCTGCTACTGTGGCT---------------G---CTACTGCTGCTATTG---CTGCTGCTGTTGCTGCTACTGC------------------------------------------------------------------------------------TGCTGCTGCTCTTGGGCGAGTT------------------------GCTGTCGATGTTGTT------G-------T--GG----------------------------C-TAA
droYak3	2R:2253639-2253798 -		CTGCG-----CGGAATGTTG-----------------------------------------------------------------CTGTGTGTTGGCTGGTCGCTGCTGCCGCTGCCGC---T---GGA----------------GCTGC---------------------T---------------GATGCTGTTGC---T------GCTGCTGCTACTGTG---GCT------------G---CTGCTGCTGCTGCTGTT---GCTGCTGTTGCTGCTGTGGC---------T------------------------------------------------------------------------GCTGCTGCTGCTCTTGGGCGAGTT------------------------GCTGC-----------------------------------------------------------CGG
droEre2	scaffold_4845:18901700-18901884 -		CTGCG-----CGGAATGTTG-----------------------------------------------------------------CTGTGTGTGGGCTGGTCGCTGCTGCCGCTGCTGC---C---GCT----------------GCTGC------T---GA---------------------------TGCTGCTGATGCT------GCTGCTGCTGCTGTG---GCTGCTGCTGCT---------------GCTGCTGCTGTTGCTGCTGATGCTGCTGCTGC------------------------------------------------------------------------------------TGCTGCTGCTCTTGGGCGAGTT------------------------GCTGCCGGCGTTGCT------G-------T--GG--------------------CCCAGG-GC-CTG
dp5	Unknown_group_476:550-713 -		TGCTG---------CT--------------------------------------------------------------GCTG---------------------CTG---C------TGCGGCT---GCTG-------------CTGCTGC------TGG------------------------------TGCTGCTGATGCT------GGTGCTGCTGCT------GCTGCGGCTGCTGCT------------GCTGC---T---GGTGC------------------------T---GCTGATGCT---GGTG------C---T------------------------------------------GCTGCTGCTGCTCCTCGGT---TTGC-GGTGGCCGCCTCTCGGG-------------------GCCCTCT--------TCGT---------------------CCTCG-GC-TGG
droPer2	scaffold_25:80048-80177 +		GCGGCT------------------------------------------------------------------------GCTGC---------------TG---------CTGC---GGC---T---GGTG-------------GTGGTGC------T------------------------------------GCTGCGTCT------GCTGCTGCTGCGACG---GCTGGTGGTGCT---------------GATGCTGCT---GCTGCTGTTGCTGATGGTGG---------T---GGTGATGGT---GGTGCCGGTGG---T------------------------------------------------GGTG---G------------------------------------------------------------------T-----------------------------G-GTG
droWil2	scf2_1100000003523:855-984 -		GTTGCT------------------------------------------------------------------------GCTGT---------------TG---TTG---C------TGC---TGCTGTT-GTT------------GTTGC------------------------------------------TGCTGTTTTT------GTTGTTGCTGCTGCA---GTTGCTGCCATTGTTGCT---------GCTGT---T---GCTGTTGCTGATGCTGTTGT------------------TGCT---GCTGCTGTTGT---T---------------------------------------------------------------------------------------GCTG---C---------------------------TG------------------------------ATG
droVir3	scaffold_12928:2260127-2260290 -		GCACC--T----------------------------------------------------------------------CGCGTCGCAGCAAG----------GCTGCTGCCGA---------C---AATG-------------TGGCATC------T---------GCGCCCGCAGCAACTGTTGCC---------------------GCTGCAGCTGCTGTTGTT---------------G---CTGCTGCTGCTGCTG---CTGCTGTTGTTGCTGCTGCTGC---------T---------G------------------------------------------------------------------CTGCTGTT---------GTT------------------------GCAGCTGTTGTTGTT------G-------TTTGG----------------------CCCA-GC-AAT
droMoj3	scaffold_6500:16033208-16033358 +		GCTGCC------------------------------------------------------------------------GCTGT------------TCCTG---CTG---C------TTCCCCT---GATG-------------TAGCTGT------TGATGT------------------------------TACTGCTGCT------GCTGTTGCTGCT------GTTGCTGCTGCTGCTGCTGCTGCT---------------GTTGCTGTTGCTGCTGCTGCTGCTGTTGCT---GCTGCTGCT---GTTG------------------------------------------------------------------C-------------------TGCTGC-----TGCTA---------------------------------------------------------CT--G-CTG
droGri2	scaffold_3013:3881-4026 +		TGCCG---------CT--------------------------------------------------------------GCTGC---------------TG---------C------TGCCGCT---GCTG-------------CTGCTGC------TGCTGC------------------------------TGCTGCCGCTGCTGCTGCTGCT------------GCTGCCGCTGCTGCTGCTGCTGCC------GCT------GCTGATGCTGCTGCTGCTGC---TGCTGCT---GCTGCTGCT---GCTG------------------------------------------------------------------C-------------------TGCTGC-----TGCTG----------------------------C--TG------------------------------CCG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GTGCC-----CGAATTGTT--------------------------------------------------------------------------------GTTGCAGCTGCCGT---------------G-GATG---------G-GCTTC------A---GCTTG------T---------------GAAGCTTATGCGACT------GCTGTGGCTGCG------ATTGCAACTGCTGCTGCTGCTGCT---------------GCTGCTGGGAGTGGTGGTGA---------T---------GGT------------GG---TGGTGGTGGTGGGCGG-NNNNNNNNNNNNNNNNNNNNNNNNNTGTTT---------C-------------------TGG---------------------------ATCC-----------------------------------TCTCCCG-CCCGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................................................................................................................................GT------------GG---TGGTGGTGGTGGGCG...............................................................................................................................................	19	5	1.40	7	0	0	0	0	0	7
.................................................................................................................................................................................................................................................................................................................GT------------GG---TGGTGGTGGTGGGCGG-.............................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................GGT------------GG---TGGTGGTGGTGGGC................................................................................................................................................	19	12	0.33	4	0	0	0	0	0	4
.....................................................................................................................................................................................................................................................................................GGTGGTGA---------T---------GGT------------GG---TGGTGGTGGT....................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................GT------------GG---TGGTGGTGGTGGGC................................................................................................................................................	18	14	0.07	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................GA---------T---------GGT------------GG---TGGTGGTGGTGGGT................................................................................................................................................	22	14	0.07	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................AACTGCTGCTGCTGCTGCT---------------.........................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0

droBip1

TGCCCG----TCGACT--------------------------------------------------------------GTTG---------------------CTGCTGCT---------------GTT-GTT------------GCTGC------------------------------------------------------------AGATGCTGTTGTTGGA---------------G---ATGCAACTGCTGTCG---CTGCTGCTGGAGGTGCAACTGA------------------TGCT---GCT------GCTGTT---G------GGAAGT--------------------------------GG--------------ATGAGGTGGGCGGG---------------------------CTCT-------------------------------------TCTCG-CTGGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GACTAG------------------------------------------------------------------------ACTGC---------------TG---------T------TGGGGAT---AGTG-------------AGCTTGC------TGGGACATC------T---------------GGGACATTTGC---T------GGTGCTGCT------------GCCGCAGTTGCTGCTGCTGCTGCT---GAT------AGCGCTGCGCCTGTT---GT------TGTTGCTGCTGCTG------------------------------GGCAGT-----------------------------------------------------GGAGGCCGCCGCACGGG-------------------CTCCCCG-------CCTG------------------------GCCG-CACTA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCCGG---------AAATCGCCGTAGAACTTGGCCAAGCACCGTACTCTCGATGCAATATAGCCGATTTTGCGCAACAATCGC---------------AC----GTCCGC--C---------T---GCTG-------------CAGCTGC------A---------------------------------------------------------------------GTTGCAACTGTTGCTGCTGCTCCT---------------GCTGATGGTGCTGCTGCTGC---TGCTGTTGCTGCTGGTGGC---GGTG-------------------------GT-------------------------TGTTG---------C-------------------TGCTGC---------------------------------------------------------------GCTGCAG-CAAGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATTGTAGT----------------------------------------------------------------------GGC------------------G---TTGCCGC--C---------T---GAT----GAGGCTGCGGTTGCTGTGGGGACA---------ATGCCAGAGTCAACG---------------------------GTTGCA------------GCAACGGCTGTTGCTGTTGCTGCTGCT------------GCTGATGTTGCTGAAGTTGC------T---------------------------GATGTT---GGTGATGGGTGGC-----------------------------------------------------GAAGGCGGCTGC-----------------------------------------GG---------------------CTCCAA-CCGGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTCCCC------------------------------------------------------------------------GTTGT---------------TG---TTG---T------TGC---------T-GGGG---------------------------------------------------GT---------------------GTTGCTGCTGCTGTTGAT---------------G---TTGCTGCTGCTGTT------GTTGCTGTTGCTGCTGTTGC------------------------------------------------------------------------------------TGCTGCTGCTGTTGGGAGGCGT------------------------GTTGTGGG-----CT------GTGGAGCGTTTGGCATTGGGTGGATGGGGGTGCTCCGCCG-CCCGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATGAT-----C-------AG-----------------------------------------------------------------CAGCTTGTTGGCCATCTGCTGCTGCTGA---------------T-GGAT------------CTGC------TGGTTGATCTGC---T---------------GATGCAGCTGC---T------GTTGCTGCT---------GCTGCAGATGTT---GCTGCAGCTGTT---GCT------GCTGCTGGGTGAGTT---GC------TGCT---GCTGTTGCT---GGTG------G---T------------------------------------------GTTG---------C-------------------TGCT-----------G----------------------------C--TG----------------------------C-TGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCGGGT------------------------------------------------------------------------GGTGC---------------TG---CTG---C------TGCGGGT---GGTG-------------CGACTGG------TGACCC---------------------------ACCTGGTGGTGGT------GATGGTGCAGCGGCG---AGTGCAGCTGCT------------------GGTG---CTGCTGATGTTGCTGCTGCTGC---TGATGTT---------GCT---GCTGCTGCTGG---T------------------------------------------GTTG---------C-------------------TGCTGC---------------------------------------------------------------GCCGCC-GC-CTG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GTGGGT------------------------------------------------------------------------GGTGC---------------TG---CTG---C------TGCGCAT---GGTG-------------CGGCTGG------TGA------------------------------CCCTGGTGGTGAT------GATGATGCAGCGGCG---AGTGCAACTGCTGTTGCTGGTGCT---------------GCTGATGTTGGTGCTGTTGA------------------TGCTGCTGCTGTTGTTGG---T------------------------------------------GTTG---------C-------------------TGCTGC---------------------------------------------------------------GCCGCC-GC-CTG	Size	Hit Count	Total Norm	Total
No Reads

dm3

GTGCT--GCGCGGAATGTTG-----------------------------------------------------------------CTGTGTGTTGGCTGGTCGCTGCTGCCGC---------------T-GATG---------------------------------------------------CT---------------------GCTGCTGCTACTGTGGCT---------------G---CTACTGCTGCTATT------GCTGCTGTTGCTGCTACTGC------------------------------------------------------------------------------------TGCTGCTGCTCTTGGGCGAATT------------------------GCTGCCGATGTTGCT------G-------T--GG--------------------CCAAGG-GC-CTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................................................TGCTACTGC------------------------------------------------------------------------------------TGCTGCTGCTCT.....................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GCTATT------GCTGCTGTTGCTGCT..........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GCGAATT------------------------GCTGCCGATGTTGC.....................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GCTGTTGCTGCTACTGC------------------------------------------------------------------------------------T................................................................................................................	18	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TGTTGCTGCTACTGC------------------------------------------------------------------------------------TGCT.............................................................................................................	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GTGCT--GCGCGGAATGTTG-----------------------------------------------------------------CTGTGTGTTGGCTGGTCGCTGCTGCCGC---------------T-GATG---------------------------------------------------CT---------------------GCTGCTGCTACTGTGGCT---------------G---CTACTGCTGCTGTTG---CTGCTGCTGTTGCTGCTACTGC------------------------------------------------------------------------------------TGCTGCTGCTCTTGGGCGAGTT------------------------GCTGCCGATGTTGCT------G-------T--GG----------------------------C-CAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................T------------------------GCTGCCGATGTTGCT------G-------T--...................................	18	3	1.33	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TTG---CTGCTGCTGTTGCTGCTA.........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGATGTTGCT------G-------T--...................................	17	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGATGTTGCT------G-------......................................	16	13	0.38	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TG---CTGCTGCTGTTGCTGCT..........................................................................................................................................................................................................	19	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................T------------------------GCTGCCGATGTTGCT------..............................................	16	11	0.18	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................GTTG---CTGCTGCTGTT................................................................................................................................................................................................................	15	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGATGTTGCT------..............................................	15	14	0.14	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................GTTG---CTGCTGCTGTTGCTGCT..........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGTTG---CTGCTGCTGTTGCTG............................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TGCTGTTG---CTGCTGCTGTTG...............................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TTG---CTGCTGCTGTTGCTG............................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGTTG---CTGCTGCTGTTGCTGC...........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GTGCT--GCGCGGAATGTTG-----------------------------------------------------------------CTGTGTGTTGGCTGGTCGCTGCTGCCGC---------------T-GATG---------------------------------------------------CT---------------------GCTGCTGCTACTGTGGCT---------------G---CTACTGCTGCTATTG---CTGCTGCTGTTGCTGCTACTGC------------------------------------------------------------------------------------TGCTGCTGCTCTTGGGCGAGTT------------------------GCTGTCGATGTTGTT------G-------T--GG----------------------------C-TAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................................................................................................................TG---CTGCTGCTGTTGCTGCT..........................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0

droYak3

CTGCG-----CGGAATGTTG-----------------------------------------------------------------CTGTGTGTTGGCTGGTCGCTGCTGCCGCTGCCGC---T---GGA----------------GCTGC---------------------T---------------GATGCTGTTGC---T------GCTGCTGCTACTGTG---GCT------------G---CTGCTGCTGCTGCTGTT---GCTGCTGTTGCTGCTGTGGC---------T------------------------------------------------------------------------GCTGCTGCTGCTCTTGGGCGAGTT------------------------GCTGC-----------------------------------------------------------CGG

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

CTGCG-----CGGAATGTTG-----------------------------------------------------------------CTGTGTGTGGGCTGGTCGCTGCTGCCGCTGCTGC---C---GCT----------------GCTGC------T---GA---------------------------TGCTGCTGATGCT------GCTGCTGCTGCTGTG---GCTGCTGCTGCT---------------GCTGCTGCTGTTGCTGCTGATGCTGCTGCTGC------------------------------------------------------------------------------------TGCTGCTGCTCTTGGGCGAGTT------------------------GCTGCCGGCGTTGCT------G-------T--GG--------------------CCCAGG-GC-CTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dp5

TGCTG---------CT--------------------------------------------------------------GCTG---------------------CTG---C------TGCGGCT---GCTG-------------CTGCTGC------TGG------------------------------TGCTGCTGATGCT------GGTGCTGCTGCT------GCTGCGGCTGCTGCT------------GCTGC---T---GGTGC------------------------T---GCTGATGCT---GGTG------C---T------------------------------------------GCTGCTGCTGCTCCTCGGT---TTGC-GGTGGCCGCCTCTCGGG-------------------GCCCTCT--------TCGT---------------------CCTCG-GC-TGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCG.........................................................................	24	5	69.60	348	0	342	1	0	1	0	4	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTGG...................................................................................	23	3	51.33	154	0	147	0	0	6	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTC............................................................................	21	5	33.00	165	0	162	3	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTC..........................................................................	23	5	32.80	164	0	161	3	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCT...........................................................................	22	5	32.60	163	0	161	2	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGG........................................................................	25	5	29.60	148	0	148	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCT.............................................................................	20	5	25.80	129	0	124	5	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTG....................................................................................	22	3	18.00	54	0	54	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GG......................................................................................	20	3	16.00	48	0	47	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTGGC..................................................................................	24	3	12.00	36	0	36	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGT.....................................................................................	21	3	9.00	27	0	26	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGGG-------------------....................................................	26	5	8.60	43	0	43	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCC..............................................................................	19	5	6.60	33	0	33	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTT............................................................................	21	5	3.80	19	0	19	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TGCTCCTCGGT---TTGC-GGTGG...................................................................................	20	3	3.67	11	0	9	0	0	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-G.......................................................................................	19	3	3.33	10	0	9	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTT..........................................................................	23	5	3.20	16	0	16	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCCTCTCG.........................................................................	23	5	3.00	15	0	15	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGGG-------------------GC..................................................	28	5	2.60	13	0	13	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCCTCT...........................................................................	21	5	2.40	12	0	12	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCCTC............................................................................	20	5	2.40	12	0	12	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GT......................................................................................	20	3	2.33	7	0	7	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGGG-------------------G...................................................	27	5	2.20	11	0	11	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCCTCTC..........................................................................	22	5	2.20	11	0	11	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCCTCTCGG........................................................................	24	5	2.00	10	0	10	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTGT...................................................................................	23	3	2.00	6	0	5	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TCCTCGGT---TTGC-GGTGGCCGCCT.............................................................................	23	5	1.80	9	0	8	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGT........................................................................	25	5	1.80	9	0	9	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCA.............................................................................	20	5	1.60	8	0	8	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCCTCGGT---TTGC-GG......................................................................................	19	3	1.33	4	0	4	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGCTCCTCGGT---TTGC-GG......................................................................................	23	3	1.33	4	0	1	0	0	0	0	0	3	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TGCTCCTCGGT---TTGC-GGTG....................................................................................	19	3	1.33	4	0	4	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGCTCCTCGGT---TTG..........................................................................................	20	3	1.33	4	0	3	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCCT.............................................................................	19	5	1.20	6	0	6	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGGG-------------------GCC.................................................	29	5	1.20	6	0	6	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTA..........................................................................	23	5	1.20	6	0	6	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCC.............................................................................	20	5	1.00	5	0	2	3	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TGCTCCTCGGT---TTGC-GGTGGCCGCCT.............................................................................	26	3	1.00	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TGCTCCTCGGT---TTGC-GGTGGCCG................................................................................	23	3	1.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTGA...................................................................................	23	3	1.00	3	0	2	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TGCTCCTCGGT---TTGC-GGT.....................................................................................	18	3	1.00	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCCTCGGT---TTGC-GGTGGC..................................................................................	23	3	1.00	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCCTCGGT---TTGC-GGTGG...................................................................................	22	3	1.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGG-------------------GCCCTCT--------TCGT---------------------C...........	19	3	1.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTGGCC.................................................................................	25	3	1.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTGGCCG................................................................................	26	3	1.00	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGC-GGTGGCCGCCTCTCGGG-------------------G...................................................	21	6	0.83	5	0	5	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CTCGGT---TTGC-GGTGGCCGCCT.............................................................................	21	5	0.80	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGC...............................................................................	18	5	0.80	4	0	3	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CTCGGT---TTGC-GGTGGCCGCCTCTCG.........................................................................	25	5	0.80	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................T---GCTGATGCT---GGTG------C---T------------------------------------------GCTG...............................................................................................................	20	20	0.70	14	0	14	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGCTGATGCT------GGTGCTGCTG........................................................................................................................................................................................................................................................................	20	20	0.70	14	0	14	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTGGA..................................................................................	24	3	0.67	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTT....................................................................................	22	3	0.67	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTGTT..................................................................................	24	3	0.67	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTCT--------TCGT---------------------CCTCG-GC-TG.	19	6	0.67	4	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTA....................................................................................	22	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGCTCCTCGGT---TTGC-GGTGG...................................................................................	25	3	0.67	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTGGTT.................................................................................	25	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCCTCGGT---TTGC-GGT.....................................................................................	20	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCCTCGGT---TTGC-G.......................................................................................	18	3	0.67	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCGGT---TTGC-GGTGG...................................................................................	19	3	0.67	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG-------------------GCCCTCT--------TCGT---------------------CCTCG-GC-...	23	3	0.67	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GTA.....................................................................................	21	3	0.67	2	0	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-........................................................................................	18	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TGCTCCTCGGT---TTGC-GGTGGC..................................................................................	21	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGCTGCTGATGCT------GGTGCTG...........................................................................................................................................................................................................................................................................	20	10	0.60	6	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCC..............................................................................	18	5	0.60	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGC------------------------T---GCTGATGCT---GGTG------C---T------------------------------------------G..................................................................................................................	20	10	0.60	6	0	6	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TCCTCGGT---TTGC-GGTGGCCGCCTC............................................................................	24	5	0.60	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-AA......................................................................................	20	4	0.50	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TCCTCGGT---TTGC-GGTGGCCGC...............................................................................	21	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................GCTGC------TGG------------------------------TGCTGCTGATGCT------GG................................................................................................................................................................................................................................................................................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................CTCCTCGGT---TTGC-GGTGGCCGCCT.............................................................................	24	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTA............................................................................	21	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCA..............................................................................	19	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GCTGC---T---GGTGC------------------------T---GCTGATGCT---GG..........................................................................................................................................................................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCCTCTCGGG-------------------....................................................	25	5	0.40	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGC------------------------T---GCTGATGCT---GGTG------C---T------------------------------------------GCTG...............................................................................................................	23	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCCTCGGT---TTGC-GGTT....................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGCTGCTGATGCT------GGTGCTGCTG........................................................................................................................................................................................................................................................................	23	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCCTCGGT---TTGC-GGTGGAA.................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTGGT..................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGA.....................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCCTCGGT---TTGC-GGTGA...................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGCTCCTCGGT---TTGC-G.......................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGG-------------------GCCCTCT--------TCGT---------------------CCT.........	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGC-GGTGGCCGCCTCTCGGG-------------------GC..................................................	22	6	0.33	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCGGT---TTGC-GGTG....................................................................................	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................T------------------------------------------GCTGCTGCTGCTCCTCGGT---TTGC-GG......................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGG-------------------GCCCTCT--------TCGT---------------------CC..........	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCTGCTCCTCGGT---TTG..........................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGG-------------------GCCCTCT--------TCGT---------------------............	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GG-------------------GCCCTCT--------TCGT---------------------CCTCG-GC-TG.	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTGCAA.................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................C---T---GGTGC------------------------T---GCTGATGCT---GGTG------..................................................................................................................................................................	21	6	0.33	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCTCCTCGGT---TTGC-GGTG....................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGG-------------------GCCCTCT--------TCGT---------------------CCTCG-G.....	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG-------------------GCCCTCT--------TCGT---------------------CCTCG-GC-A..	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTCT--------TCGT---------------------CCTCG-GC-TGG	20	6	0.33	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTAAA..................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCGGT---TTGC-GGTGGCCGCT..............................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TG------C---T------------------------------------------GCTGCTGCTGCTCCTCGGT---.............................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GA......................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TGCTCCTCGGT---TTGC-GGTGGCCGC...............................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGCCTCTCGGG-------------------GCCCTCT--------.....................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GGT---TTGC-GGTGGCCGCCTCTC..........................................................................	21	6	0.33	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG-------------------GCCCTCT--------TCGT---------------------CCTCG-GC-TG.	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGG-------------------GCCCTCT--------TCGT---------------------A...........	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGC-GGTGGCCGCCTCTCGGG-------------------GCCC................................................	24	6	0.33	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGTGTA..................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG-------------------GCCCTCT--------TCGT---------------------CA..........	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGG-------------------GCCCTCT--------TCGA---------------------............	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCTCCTCGGT---TTGC-GG......................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................C------TGG------------------------------TGCTGCTGATGCT------GGTG..............................................................................................................................................................................................................................................................................	21	6	0.33	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................GGG-------------------GCCCTCT--------TCGT---------------------CCTCG-GC-T..	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGG-------------------GCCCTCT--------TCGT---------------------CCTCG-......	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGC------------------------T---GCTGATGCT---GGTG------C---T------------------------------------------...................................................................................................................	19	10	0.30	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGCTGCTGATGCT------GGTGCT............................................................................................................................................................................................................................................................................	19	10	0.30	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................T---TTGC-GGTGGCCGCCTCT...........................................................................	18	7	0.29	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................G------------------------------TGCTGCTGATGCT------GGTGCTGCTG........................................................................................................................................................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................GTGC------------------------T---GCTGATGCT---GGTG------C---T------------------------------------------GCTG...............................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GGAA....................................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGC-GAA.....................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TTGC-GGTGGCCGCCTCTCGG........................................................................	20	9	0.22	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TTGC-GGTGGCCGCCTCTCG.........................................................................	19	9	0.22	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGC-GGTGGCCGCCTCTCGG........................................................................	19	9	0.22	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCAA........................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................T---GCTGATGCT---GGTG------C---T------------------------------------------GCT................................................................................................................	19	20	0.20	4	0	4	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGCTGATGCT------GGTGCTGCT.........................................................................................................................................................................................................................................................................	19	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCC.........................................................................	24	5	0.20	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTAA.........................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGATGCT------GGTGCTGCTGCT------GC..............................................................................................................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGTA..............................................................................	19	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCC...........................................................................	22	5	0.20	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGATGCT------GGTGCTGCTGCT------G...............................................................................................................................................................................................................................................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CTCGGT---TTGC-GGTGGCCGCCTC............................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TGATGCT---GGTG------C---T------------------------------------------GCTGCTG............................................................................................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTTA...........................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCCTCTT..........................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCCTT............................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CTCGGT---TTGC-GGTGGCCGCCTCTC..........................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCAA.............................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TGATGCT---GGTG------C---T------------------------------------------GCTGCTGC...........................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CCTCGGT---TTGC-GGTGGCCGCC..............................................................................	21	5	0.20	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CTCGGT---TTGC-GGTGGCCGCCTCT...........................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TCCTCGGT---TTGC-GGTGGCCA................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTCGGT---TTGT-........................................................................................	18	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CCTCGGT---TTGC-GGTGGCCGCCTCTCGGG-------------------....................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGGT-------------------....................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCCTCTCGGG-------------------TT..................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................T------------GCTGC---T---GGTGC------------------------T---GCTGATGCT---GG..........................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTAA...........................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGTT-------------------T...................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTGATGCT------GGTGCTGCTGCT------GCTGCG..........................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGA........................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCCC.............................................................................	19	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGGC-------------------....................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TGCTGC------TGG------------------------------TGCTGCTGATGCT------GG................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCCTCTCGGG-------------------GC..................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................CTCCTCGGT---TTGC-GGTGGCCGC...............................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGGT---TTGC-GGTGGCCGCCTCTA..........................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CTCGGT---TTGC-GGTGGCCGCCTCTCGG........................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTG..........................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................CTCCTCGGT---TTGC-GGTGGCCGCCTC............................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TCCTCGGT---TTGC-GGTGGCCGT...............................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGC-GGTGGCCGCCTCTCGGG-------------------....................................................	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TTGC-GGTGGCCGCCTCTCGGG-------------------....................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTCT--------TCGT---------------------CCTCG-GC-TG.	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GC-GGTGGCCGCCTCTCGGG-------------------G...................................................	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GGT---TTGC-GGTGGCCGCCTCT...........................................................................	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TTGC-GGTGGCCGCCTCTCGGG-------------------GC..................................................	23	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GGT---TTGC-GGTGGCCGCCTC............................................................................	19	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................T---TTGC-GGTGGCCGCCTCTCGGG-------------------GCTTA...............................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGAA-------------------A...................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................C---T---GGTGC------------------------T---GCTGATGCT---GG..........................................................................................................................................................................	19	6	0.17	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGC-GGTGGCCGCCTCTCGGG-------------------GCCT................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GT---TTGC-GGTGGCCGCCTC............................................................................	18	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGAA-------------------....................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGTA-------------------....................................................	26	6	0.17	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GCT------GGTGCTGCTGCT------GCTGCGGC........................................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GGT---TTGC-GGTGGCCGCCTCTCG.........................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................C------TGG------------------------------TGCTGCTGATGCT------GG................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGC-GGTGGCCGCCTCTCGGG-------------------GCCCTC..............................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TGC------TGG------------------------------TGCTGCTGATGCT------GG................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGC---T---GGTGC------------------------T---GCTGATGCT---GG..........................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGC-GGTGGCCGCCTCTCGGG-------------------GCCCT...............................................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCCTCTCGGA-------------------....................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GGT---TTGC-GGTGGCCGCCT.............................................................................	18	6	0.17	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGC-GGTGGCCGCCTCTCGGG-------------------TA..................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCT--------TCGT---------------------CCTCG-GC-TG.	18	6	0.17	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGC-GGTGGCCGCCTCTCGGG-------------------TTA.................................................	23	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................T---TTGC-GGTGGCCGCCTCTCGGG-------------------GCCCC...............................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGC-GGTGGCCGCCTCTCGGG-------------------GT..................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TGATGCT---GGTG------C---T------------------------------------------GCTGCTGCTG.........................................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGATGCT------GGTGCTGCTGCT------GCTG............................................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGCTGCT------GCTGCGGCTGCTG...................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCTGCTCCTCGGT---A............................................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGC------------------------T---GCTGATGCT---GGTG------C---T------------------------------------------GC.................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................GG------------------------------TGCTGCTGATGCT------GGT...............................................................................................................................................................................................................................................................................	18	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGCTGCTGATGCT------GGTGCTGC..........................................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................T---GGTGC------------------------T---GCTGATGCT---GGT.........................................................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GGTGC------------------------T---GCTGATGCT---GGT.........................................................................................................................................................................	18	7	0.14	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................TGG------------------------------TGCTGCTGATGCT------GGT...............................................................................................................................................................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGCAAA............................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................T------------GCTGC---T---GGTGC------------------------T---GCTGATG.................................................................................................................................................................................	20	15	0.13	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................TGCTGC------TGG------------------------------TGCTGCTGATG..........................................................................................................................................................................................................................................................................................	20	15	0.13	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................TGG------------------------------TGCTGCTGATGCT------GG................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGC------------------------T---GCTGATGCT---GGTG------C---T------------------------------------------GCTA...............................................................................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGCTGCTGATGCT------GGTGCTGCTA........................................................................................................................................................................................................................................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................T---GGTGC------------------------T---GCTGATGCT---GG..........................................................................................................................................................................	18	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTGATGCT------GGTGCTGCTGCT------GC..............................................................................................................................................................................................................................................................	22	17	0.12	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGATGCT---GGTG------C---T------------------------------------------GCTGCTGC...........................................................................................................	22	17	0.12	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................T------------GCTGC---T---GGTGC------------------------T---GCTGATGCT---G...........................................................................................................................................................................	23	9	0.11	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGT---TTGC-GGTGGCCGTT..............................................................................	19	9	0.11	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGC-GGTGGCCGCCTCTCG.........................................................................	18	9	0.11	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TGCTGC------TGG------------------------------TGCTGCTGATGCT------G.................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................CTGATGCT------GGTGCTGCTG........................................................................................................................................................................................................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGATGCT---GGTG------C---T------------------------------------------GCTG...............................................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGATGCT---GGTG------C---T------------------------------------------GCTGCT.............................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGATGCT---GGTG------C---T------------------------------------------GCTGCTGCTGCT.......................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGC-GGTGGCCGCCTCTCGGT-------------------T...................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGCTCCTCGGT---TTGT-TA......................................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GCTGCTGATGCT------GGTGCTGCT.........................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TGC------TGG------------------------------TGCTGCTGATGCT------G.................................................................................................................................................................................................................................................................................	20	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GCTGCTGATGCT------GGTGCTGCTGCT------G...............................................................................................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GC------------------------T---GCTGATGCT---GGTG------C---T------------------------------------------GCT................................................................................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GC------------------------T---GCTGATGCT---GGTG------C---T------------------------------------------GCTGCTG............................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGC---T---GGTGC------------------------T---GCTGATGCT---G...........................................................................................................................................................................	20	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TGC------TGG------------------------------TGCTGCTGATGCT------..................................................................................................................................................................................................................................................................................	19	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGC---T---GGTGC------------------------T---GCTGATGCT---............................................................................................................................................................................	19	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................C------------------------T---GCTGATGCT---GGTG------C---T------------------------------------------GCT................................................................................................................	20	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CTGCTGATGCT------GGTGCTGCT.........................................................................................................................................................................................................................................................................	20	14	0.07	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGCTGATGCT------GGTGCTGCTGCT------GC..............................................................................................................................................................................................................................................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................T---GCTGATGCT---GGTG------C---T------------------------------------------GCTGCTGC...........................................................................................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGATGCT---GGTG------C---T------------------------------------------GCTGCTGCT..........................................................................................................	23	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTGATGCT------GGTGCTGCTGCT------GCT.............................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGATGCT---GGTG------C---T------------------------------------------GCTGCTGCTG.........................................................................................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTGATGCT------GGTGCTGCTGCT------GCTG............................................................................................................................................................................................................................................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................T---GCTGATGCT---GGTG------C---T------------------------------------------GCTGCTG............................................................................................................	23	18	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGCTGATGCT------GGTGCTGCTGC.......................................................................................................................................................................................................................................................................	21	18	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................T---GCTGATGCT---GGTG------C---T------------------------------------------GCTGCT.............................................................................................................	22	18	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGCTGATGCT------GGTGCTGCTGCT------G...............................................................................................................................................................................................................................................................	23	18	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................T---GCTGATGCT---GGTG------C---T------------------------------------------GCTGC..............................................................................................................	21	18	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGCTGATGCT------GGTGCTGCTGCT------................................................................................................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GCTGATGCT---GGTG------C---T------------------------------------------GCTGC..............................................................................................................	20	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GCTGATGCT------GGTGCTGCTGCT------G...............................................................................................................................................................................................................................................................	22	19	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GCTGATGCT---GGTG------C---T------------------------------------------GCTGCTG............................................................................................................	22	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GCTGATGCT------GGTGCTGCTGC.......................................................................................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTGATGCT------GGTGCTGCTGCT------G...............................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCGGCT------------------------------------------------------------------------GCTGC---------------TG---------CTGC---GGC---T---GGTG-------------GTGGTGC------T------------------------------------GCTGCGTCT------GCTGCTGCTGCGACG---GCTGGTGGTGCT---------------GATGCTGCT---GCTGCTGTTGCTGATGGTGG---------T---GGTGATGGT---GGTGCCGGTGG---T------------------------------------------------GGTG---G------------------------------------------------------------------T-----------------------------G-GTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

GTTGCT------------------------------------------------------------------------GCTGT---------------TG---TTG---C------TGC---TGCTGTT-GTT------------GTTGC------------------------------------------TGCTGTTTTT------GTTGTTGCTGCTGCA---GTTGCTGCCATTGTTGCT---------GCTGT---T---GCTGTTGCTGATGCTGTTGT------------------TGCT---GCTGCTGTTGT---T---------------------------------------------------------------------------------------GCTG---C---------------------------TG------------------------------ATG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................TGCCATTGTTGCT---------GCTGT---T---G........................................................................................................................................................................................................................	20	20	0.75	15	0	0	0	15	0
.....................................................................................................................................................................................................................................................................T---GCTGTTGCTGATGCTGTTGT------------------TG.................................................................................................................................................................................	23	14	0.43	6	0	3	0	3	0
.....T------------------------------------------------------------------------GCTGT---------------TG---TTG---C------TGC---TGCTGTT-G...............................................................................................................................................................................................................................................................................................................................................................	23	20	0.40	8	0	8	0	0	0
.......................................................................................................................................................................................................................................TGCCATTGTTGCT---------GCTGT---T---.........................................................................................................................................................................................................................	19	20	0.25	5	0	3	0	2	0
..............................................................................................................................................................................................................................................................................TGCTGATGCTGTTGT------------------TGCT---G...........................................................................................................................................................................	20	17	0.24	4	0	4	0	0	0
.....................................................................................................................................................................................................................................................................T---GCTGTTGCTGATGCTGTTG......................................................................................................................................................................................................	20	16	0.13	2	0	2	0	0	0
...........................................................................................................................................................................................................................................................................TGTTGCTGATGCTGTTGT------------------TG.................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
..TGCT------------------------------------------------------------------------GCTGT---------------TG---TTG---C------TGC---TGCTG...................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
................................................................................TGT---------------TG---TTG---C------TGC---TGCTGTT-GTT------------GT...............................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0
.....................................................................................................................................................................................................................TGCTGCTGCA---GTTGCTGC........................................................................................................................................................................................................................................................	18	11	0.09	1	0	0	0	1	0
...........................................................................................................................GCTGTT-GTT------------GTTGC------------------------------------------TGCTGTTTTG------..................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................ATGCTGTTGT------------------TGCT---GCTGCTGTTGT---T---------------------------------------------------------------------------------------......................................................................	26	12	0.08	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................T---GCTGTTGCTGATGCTGTTGT------------------TGCT---GCT.........................................................................................................................................................................	28	12	0.08	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................TGT---T---GCTGTTGCTGATGCTGTTG......................................................................................................................................................................................................	23	12	0.08	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................TGTTGCTGATGCTGTTGT------------------TGC................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................GTTGCTGATGCTGTTGT------------------TGCT---G...........................................................................................................................................................................	22	13	0.08	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................TGTTGCTGATGCTGTTGT------------------TGCT---GC..........................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................TTGCTGATGCTGTTGT------------------TGCT---G...........................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................T---GCTGTTGCTGATGCTGTTGT------------------T..................................................................................................................................................................................	22	14	0.07	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................TGATGCTGTTGT------------------TGCT---GCTGCTG.....................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................TGATGCTGTTGT------------------TGCT---GCTG........................................................................................................................................................................	20	18	0.06	1	0	1	0	0	0
...................................................................................................................................................................................................................................................T---------GCTGT---T---GCTGTTGCTGATGC...........................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................TTGCTGATGCTGTTGT------------------TG.................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................TGCCATTGTTGCT---------GCTGT---T---GCTG.....................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................ATTGTTGCT---------GCTGT---T---GCTGT....................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
.......................................................................................................TTG---C------TGC---TGCTGTT-GTT------------G................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................GCTGCCATTGTTGCT---------GCTGT---.............................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................TGCTGCCATTGTTGCT---------GCTGT---T---GC.......................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..............................................................................GCTGT---------------TG---TTG---C------TGC---TGCTG...................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................CATTGTTGCT---------GCTGT---T---GCTGT....................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................T------GTTGTTGCTGCTGCA---GTT.............................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0

droVir3

GCACC--T----------------------------------------------------------------------CGCGTCGCAGCAAG----------GCTGCTGCCGA---------C---AATG-------------TGGCATC------T---------GCGCCCGCAGCAACTGTTGCC---------------------GCTGCAGCTGCTGTTGTT---------------G---CTGCTGCTGCTGCTG---CTGCTGTTGTTGCTGCTGCTGC---------T---------G------------------------------------------------------------------CTGCTGTT---------GTT------------------------GCAGCTGTTGTTGTT------G-------TTTGG----------------------CCCA-GC-AAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....C--T----------------------------------------------------------------------CGCGTCGCAGCAAG----------GCTGCTGC....................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGTTGTTGTT------G-------TTTGG----------------------CCCA-G.....	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TGCTGCTG---CTGCTGTTGTTG...............................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCTGCC------------------------------------------------------------------------GCTGT------------TCCTG---CTG---C------TTCCCCT---GATG-------------TAGCTGT------TGATGT------------------------------TACTGCTGCT------GCTGTTGCTGCT------GTTGCTGCTGCTGCTGCTGCTGCT---------------GTTGCTGTTGCTGCTGCTGCTGCTGTTGCT---GCTGCTGCT---GTTG------------------------------------------------------------------C-------------------TGCTGC-----TGCTA---------------------------------------------------------CT--G-CTG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TGCCG---------CT--------------------------------------------------------------GCTGC---------------TG---------C------TGCCGCT---GCTG-------------CTGCTGC------TGCTGC------------------------------TGCTGCCGCTGCTGCTGCTGCT------------GCTGCCGCTGCTGCTGCTGCTGCC------GCT------GCTGATGCTGCTGCTGCTGC---TGCTGCT---GCTGCTGCT---GCTG------------------------------------------------------------------C-------------------TGCTGC-----TGCTG----------------------------C--TG------------------------------CCG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_286

scaffold_13117:1952303-1952391 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-29.0	-29.0	-28.8