ID:

dan_2827

 Coordinate:

scaffold_13340:25514-25664 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.8 -14.8 -14.7 -14.5

Flybase annnotation

CDS [Dana\GF17498-cds]; exon [dana_GLEANR_18762:1]; intron [Dana\GF17498-in]

No Repeatable elements found

mature
  1. scaffold_12928:207236-207263 +
  2. scaffold_13248:4547820-4547847 -
  3. scaffold_13250:3022034-3022061 -
  4. dan_2827  scaffold_13340:25612-25639 +
star
  1. scaffold_12928:207171-207196 +
  2. scaffold_13248:4547887-4547912 -
  3. dan_2827  scaffold_13340:25547-25572 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCACGATTTACGTAAGCAACAGCCAGGCCCGGCGGATAATATGGGTATGGTGGGTAGTTGTACCCACTCGGAAATTTCCGAGTGGGGAAAATACCCACTGGGATTGTTGAAAATTTAACAGCAAAAGAATATTTTATTGGATTTTTCTCAACTCCTAATACGAAATCAGAAACCCTATTTAACCTTGTTCAAGAAGTTTTTGAAAAACATAATTTATCAATTTCCAAACTGAGGGGTCAATGTTACGATG
***********************************************************************************.((.............((((((((..(((((((...(((.((((.....)))).))))))))))..))).)))))................))*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V039
embryo
 V055
head
 V106
head
....................................................................................................................................................TCAACTCCTAATACGAAATCAGAAACCC........................................................................... 28 0 4 5.50 22 22 0 0 0 0 0
..................................................................................................................................................................................................................TAATTTATCAATTTCCAAACTGAGGGGT............. 28 0 5 3.20 16 12 3 0 1 0 0
......................................................................GGAGATTTCCGAATGGGGA.................................................................................................................................................................. 19 2 13 2.69 35 0 3 24 0 1 7
...............................................................................................................................................................TACGAAATCAGAAACCCTATTTAACC.................................................................. 26 0 4 1.75 7 7 0 0 0 0 0
............................................................................................................................................................TAATACGAAATCAGAAACCCTATTTAACC.................................................................. 29 0 4 1.75 7 7 0 0 0 0 0
.....................................................................CGGAGATTTCCGAATGGGGA.................................................................................................................................................................. 20 2 13 1.62 21 0 0 17 0 0 4
....................................................................................................................................................................................TAACCTTGTTCAAGAAGTTTTTGAAA............................................. 26 0 4 1.50 6 6 0 0 0 0 0
.........................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGTCAAT......... 25 0 4 1.25 5 5 0 0 0 0 0
....................................................................CCGGAGATTTCCGAATGGGGA.................................................................................................................................................................. 21 3 14 1.21 17 0 1 13 1 0 2
.....................................................................................................................................................................................................................TTTATCAATTTCCAAACTGAGGGGTC............ 26 0 5 1.00 5 4 1 0 0 0 0
.......................................................................................................................................................................................................................TATCAATTTCCAAACTGAGGGGTCAAT......... 27 0 4 1.00 4 4 0 0 0 0 0
..................................................................................................................................................................................................................TAATTTATCAATTTCCAAACTGAGGGG.............. 27 0 5 1.00 5 3 1 0 1 0 0
....................................................................................................................................................TCAACTCCTAATACGAAATCAGAAACC............................................................................ 27 0 4 0.75 3 3 0 0 0 0 0
......................................................................................................................................................AACTCCTAATACGAAATCAGAAACCC........................................................................... 26 0 4 0.75 3 3 0 0 0 0 0
.......................................................................................................................................................................................................................TATCAATTTCCAAACTGAGGGGTC............ 24 0 5 0.60 3 3 0 0 0 0 0
.........................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGTCAAC......... 25 1 4 0.50 2 2 0 0 0 0 0
.........................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGTCAATGT....... 27 0 4 0.50 2 1 1 0 0 0 0
..............................................................................................................................................TTTTTCTCAACTCCTAATACGAAATCAGA................................................................................ 29 0 4 0.50 2 0 2 0 0 0 0
..........................................................................................................................................................................................................................CAATTTCCAAACTGAGGGGTCAAT......... 24 0 4 0.50 2 1 1 0 0 0 0
.....................................................................................................................................................CAACTCCTAATACGAAATCAGAAACCC........................................................................... 27 0 4 0.50 2 2 0 0 0 0 0
...............................................................................................................................................TTTTCTCAACTCCTAATACGAAATCAGA................................................................................ 28 0 4 0.50 2 0 2 0 0 0 0
.....................................................................................................................................................................................................................TTTATCAATTTCCAAACTGAGGGGTCA........... 27 0 4 0.50 2 0 2 0 0 0 0
.....................................................................CGCAGATTTCCGAATGGGGAAA................................................................................................................................................................ 22 3 13 0.46 6 0 0 0 0 4 2
.....................................TAATATGGGTATGGTGGGTAGTTG.............................................................................................................................................................................................. 24 0 14 0.43 6 2 3 0 1 0 0
.....................................TAATATGGGTATGGTGGGTAGT................................................................................................................................................................................................ 22 0 14 0.43 6 4 2 0 0 0 0
.......................................................................GAGATTTCCGAATGGGGA.................................................................................................................................................................. 18 2 14 0.43 6 0 3 0 0 3 0
.........................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGT............. 21 0 5 0.40 2 2 0 0 0 0 0
.....................................................................CGGAGATTTCCGAATGGGGAA................................................................................................................................................................. 21 2 13 0.38 5 0 0 5 0 0 0
......................................................................GCAGATTTCCGAATGGGGAAA................................................................................................................................................................ 21 3 16 0.38 6 0 0 0 0 5 1
...................................................................................TGGGGAAAATACCCACTGGGATTGTT.............................................................................................................................................. 26 0 3 0.33 1 0 1 0 0 0 0
...................................................................................TGGGGAAAATACCCACTGGGATTGC............................................................................................................................................... 25 1 3 0.33 1 1 0 0 0 0 0
............................................................................................TGCCCACTGGGATTGTTGAAAATT....................................................................................................................................... 24 1 3 0.33 1 1 0 0 0 0 0
....................................................................CCGGAGATTTCCGAATGGGG................................................................................................................................................................... 20 3 16 0.31 5 0 4 1 0 0 0
......................................................................GGAGATTTCCGAATGGGGAA................................................................................................................................................................. 20 2 13 0.31 4 0 0 4 0 0 0
............................CCCGGCGGATAATATGGGTATGG........................................................................................................................................................................................................ 23 0 14 0.29 4 3 0 0 1 0 0
.....................................TAATATGGGTATGGTGGGTAG................................................................................................................................................................................................. 21 0 14 0.29 4 3 0 0 1 0 0
............................................................................................................................................................................................TTAAAGAAGTTTTTGAAAAACATAAT..................................... 26 1 4 0.25 1 1 0 0 0 0 0
.................................................................................................................................................................CGAAATCAGAAACCCTATTTAACCTTGTT............................................................. 29 0 4 0.25 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................CAAACTGAGGGGTCAATGTTACGATG 26 0 4 0.25 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................CAAACTGAAGGGTCAATGTTACGATG 26 1 4 0.25 1 0 1 0 0 0 0
........................................................................................................................................................CTCCTAATACGAAATCAGAAACCCTA......................................................................... 26 0 4 0.25 1 0 1 0 0 0 0
....................................................................................................................TAACAGCAAAAGAATATTTTATTGGA............................................................................................................. 26 0 4 0.25 1 1 0 0 0 0 0
....................................................................................................................................................................................TAACCTTGTTCAAGAAGTTTTTGA............................................... 24 0 4 0.25 1 1 0 0 0 0 0
...............................................................................................................................................................TACGAAATCAGGAACCCTATTTAACC.................................................................. 26 1 4 0.25 1 1 0 0 0 0 0
....................................................................................................................................................................................TAACCTTGTTCAAGAAGTT.................................................... 19 0 4 0.25 1 0 1 0 0 0 0
......................................................................................................................................................AACTCCTCATACGAAATCAGACACCC........................................................................... 26 2 4 0.25 1 1 0 0 0 0 0
............................................................................................................................................................TAATACGAAATCAGAAACCCTATTTA..................................................................... 26 0 4 0.25 1 1 0 0 0 0 0
.......................................................................................................................................................ACTCCTAAGACGAAATCAGAAACC............................................................................ 24 1 4 0.25 1 0 1 0 0 0 0
......................................................................................................................................................................................................................TTATCAATTTCCAAACTGAGGGGTCA........... 26 0 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGTCAA.......... 24 0 4 0.25 1 0 1 0 0 0 0
....................................................................................................................................................................................TAACCTTGTTCAAGAAGTTTTT................................................. 22 0 4 0.25 1 0 0 0 1 0 0
....................................................................................................................................................TCAATTCCTAATACGAAATCAGAAACCC........................................................................... 28 1 4 0.25 1 1 0 0 0 0 0
....................................................................................................................TAACAGCAAAAGAATATTTTATTGGATT........................................................................................................... 28 0 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................TTTTTCTCAACTCCTAATACGAAATCA.................................................................................. 27 0 4 0.25 1 1 0 0 0 0 0
............................................................................................................................................................TAATACGAAATCAGAAACCCTATTT...................................................................... 25 0 4 0.25 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................TCCAAACTGAGGGGTCAATGTTACGATG 28 0 4 0.25 1 1 0 0 0 0 0
..................................................................................................................................................................................TTTAACCTTGTTCAAGAAGTTTTTGAA.............................................. 27 0 4 0.25 1 0 0 0 1 0 0
....................................................................................................................................................................................TAACCTTGTTCAAGAAGTTTTTGAAAAAC.......................................... 29 0 4 0.25 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................AAACTGAGGGGTCAATGTTACGA.. 23 0 4 0.25 1 1 0 0 0 0 0
...............................................................................................................................................................TACTAAATCAGAAACCCTATTTAACC.................................................................. 26 1 4 0.25 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................AAACTGAGGGGTCAATGTTACGATG 25 0 4 0.25 1 1 0 0 0 0 0
..................................................................................................................................................TCTCAACTCCTAATACGAAATCAGA................................................................................ 25 0 4 0.25 1 0 1 0 0 0 0
....................................................................................................................................................................................TAACCTTGTTCAAGAAGTTTTTGAA.............................................. 25 0 4 0.25 1 0 0 0 1 0 0
...................................................................................................................................................................................TTAACCTTGTTCAAGAAGTTTTTGA............................................... 25 0 4 0.25 1 1 0 0 0 0 0
....................................................................................................................TAACAGCAAAAGAATATTTTATTGGATTT.......................................................................................................... 29 0 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................................ATACGAAATCAGAAACCCTAT........................................................................ 21 0 4 0.25 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................AATTTCCAAACTGAGGGGTCAATGT....... 25 0 4 0.25 1 0 1 0 0 0 0
....................................................................................................................................................TCAACTCCTAATACGAAATCAGAAACCG........................................................................... 28 1 4 0.25 1 1 0 0 0 0 0
...............................................................................................................................................TTTTCTCAACTCCTAATACGAAATCA.................................................................................. 26 0 4 0.25 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................TGAATTTCCAAACTGAGGGGTCAATG........ 26 1 4 0.25 1 1 0 0 0 0 0
................................................................................................................................................................................................................................CCAAACTGAGGGGTCAATGTTACGA.. 25 0 4 0.25 1 1 0 0 0 0 0
............................................................................................................................................................TAATACTAAATCAGAAACCCT.......................................................................... 21 1 4 0.25 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................AATTTCCAAACTGAGGGGTCAAT......... 23 0 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................TTCCAAACTGAGGGGTCAATGTTACGATG 29 0 4 0.25 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................TCCAAACTGAGGGGTCAATGTTACGAT. 27 0 4 0.25 1 1 0 0 0 0 0
............................................................................................................................................................TAATACGAAATCAGAAACCCTATTTAAC................................................................... 28 0 4 0.25 1 1 0 0 0 0 0
...........................................................................................................................................................................AACCCTATTTAACCTTGTTCAAGAAGT..................................................... 27 0 4 0.25 1 1 0 0 0 0 0
............................................................................................................................................................................................................................ATTTCCAAACTGAGGGGTCAATGC....... 24 1 4 0.25 1 1 0 0 0 0 0
..................................................................................................................................TATTTTATTGGATTTTTCTCAACTGC............................................................................................... 26 1 4 0.25 1 1 0 0 0 0 0
................................................................................................................................................TTTCTCAACTCCTAATACGAAATCAGA................................................................................ 27 0 4 0.25 1 1 0 0 0 0 0
............................................................................................................................................................TAATACGAAATCAGAAACCCTATT....................................................................... 24 0 4 0.25 1 1 0 0 0 0 0
...................................................................................................................................................CTCAACTCCTAATACGAAATCAGAAACCC........................................................................... 29 0 4 0.25 1 1 0 0 0 0 0
....................................................................................................................................................................................TAACCTTGTTCAAGAAGTTTTTGAAAAA........................................... 28 0 4 0.25 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................TATCAATTTCCAAACTGAGGGGTCAAC......... 27 1 4 0.25 1 1 0 0 0 0 0
.......................................................................................................................................................ACTCCTAATACGAAATCAGAAACCC........................................................................... 25 0 4 0.25 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TATCAATTTCCAAACTGAGGGGTCAATGC....... 29 1 4 0.25 1 1 0 0 0 0 0
....................................................................................................................................................TCAACTCCTAATACGAAATCAGAAAC............................................................................. 26 0 4 0.25 1 1 0 0 0 0 0
.......................................................................GAGATTTCCGAATGGGGAAA................................................................................................................................................................ 20 2 13 0.23 3 0 0 3 0 0 0
....................................................................CCGGAGATTTCCGAATGGGGAAA................................................................................................................................................................ 23 3 13 0.23 3 0 0 3 0 0 0
.............................CCGGCGGATAATATGGGTATGG........................................................................................................................................................................................................ 22 0 14 0.21 3 1 2 0 0 0 0
......................................................................GGAGATTTCCGAATGGGGAAAC............................................................................................................................................................... 22 3 14 0.21 3 0 0 3 0 0 0
.....................................TAATATGGGTATGGTGGGTAGTTGTA............................................................................................................................................................................................ 26 0 14 0.21 3 1 2 0 0 0 0
..................................................................................................................................................................................................................TAATTTATCAATTTCCAAACTGAGGGT.............. 27 1 5 0.20 1 1 0 0 0 0 0
......................................................................................................................................................................................................................TTATCAATTTCCAAACTGAGGGG.............. 23 0 5 0.20 1 0 0 0 1 0 0
.........................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGC............. 21 1 5 0.20 1 1 0 0 0 0 0
.............................................................................................................................................................................................................AGACATAATTTATCAATTTCCAAAC..................... 25 1 5 0.20 1 1 0 0 0 0 0
..................................................................................................................................................................................................................TGATTTATCAATTTCCAAACTGAGGGGC............. 28 2 5 0.20 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TATCAATTACCAAACTGAGGGGT............. 23 1 5 0.20 1 0 1 0 0 0 0
..................................................................................................................................................................................................................TAATTTATCAATTTCCAAACTGAGGGGC............. 28 1 5 0.20 1 1 0 0 0 0 0
..................................................................................................................................................................................................................TAATTTATCACTTTCCAAACTGAGGGGT............. 28 1 5 0.20 1 1 0 0 0 0 0
..................................................................................................................................................................................................................TGATTTATCAATTTCCAAACTGAGGGGT............. 28 1 5 0.20 1 1 0 0 0 0 0
..................................................................................................................................................................................................................TAATTTATCAATTTCCAAACTGAGG................ 25 0 5 0.20 1 1 0 0 0 0 0
....................................................................................................................................................................................................................ATTTATCAATTTCCAAACTGAGGGGT............. 26 0 5 0.20 1 1 0 0 0 0 0
..................................................................................................................................................................................................................GAATTTATCAATTTCCAAACTGAGGG............... 26 1 5 0.20 1 0 1 0 0 0 0
..................................................................................................................................................................................................................TAATTTATCAATTTCCAAACTGAGTGG.............. 27 1 5 0.20 1 0 0 0 1 0 0
...............AGCATCAGCCAGGCCTGGC......................................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 1 0
.................................................................................................................................................................................................................ATAATTTATCAATTTCCAAACTGAG................. 25 0 5 0.20 1 1 0 0 0 0 0
......................................................................................................................................................................................................TTTTGAAAAACATAATTTATC................................ 21 0 5 0.20 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................TTTATCAATTTCCAAACTGAGGGGT............. 25 0 5 0.20 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TATCAATTTCCAAACTGAGGGG.............. 22 0 5 0.20 1 1 0 0 0 0 0
..................................................................................................................................................................................................................TAATTTATCAATTTCCAAACTGAGGG............... 26 0 5 0.20 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TATCAATTTCCAAACTGAGGGGT............. 23 0 5 0.20 1 1 0 0 0 0 0
..................................................................................................................................................................................................................TAATTTATCAATTTACAAACTGAGG................ 25 1 5 0.20 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................TTTATCAATTTCCAAACTGAGGGG.............. 24 0 5 0.20 1 0 1 0 0 0 0
...................................................................................................................................................................................................................AATTTATCAATTTCCAAACTGAGGGG.............. 26 0 5 0.20 1 0 1 0 0 0 0
.......................................................................GAGATTTCCGAATGGGGAAAC............................................................................................................................................................... 21 3 15 0.20 3 0 0 3 0 0 0
......................................................................................................................................................................................................................TTATCAATTTCCAAACTGAGGGGT............. 24 0 5 0.20 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGTC............ 22 0 5 0.20 1 1 0 0 0 0 0
.....................................................................CGGAGATTTCCGAATGGGGC.................................................................................................................................................................. 20 3 16 0.19 3 0 3 0 0 0 0
......................................................................GCAGATTTCCGAATGGGGAA................................................................................................................................................................. 20 3 19 0.16 3 0 0 0 0 3 0
....................................................................TCGGAAATTTCCGAGTGGGGAAAATACC........................................................................................................................................................... 28 0 13 0.15 2 2 0 0 0 0 0
......................................................................GGAGATTTCCGAATGGGGAAA................................................................................................................................................................ 21 2 13 0.15 2 0 0 2 0 0 0
.......................................................................GAGATTTCCGAATGGGGAA................................................................................................................................................................. 19 2 13 0.15 2 0 0 1 0 0 1
.....................................TAATATGGGTATGGTGGGTAGTTGTAC........................................................................................................................................................................................... 27 0 13 0.15 2 1 1 0 0 0 0
........................................................................AGATTTCCGAATGGGGAAAC............................................................................................................................................................... 20 3 20 0.15 3 0 1 0 0 2 0
.....................................................................CGGAGATTTCCGAATGGGGCA................................................................................................................................................................. 21 3 14 0.14 2 0 2 0 0 0 0
...................................GATAATATGGGTATGGTGGG.................................................................................................................................................................................................... 20 0 14 0.14 2 1 0 0 1 0 0
............................CCCGGCGGATAATATGGGTATGGT....................................................................................................................................................................................................... 24 0 14 0.14 2 2 0 0 0 0 0
.....................................TAATATGGGTATGGTGGGTAGTTGT............................................................................................................................................................................................. 25 0 14 0.14 2 2 0 0 0 0 0
...................................GATAATATGGGTATGGTGGGTA.................................................................................................................................................................................................. 22 0 14 0.14 2 2 0 0 0 0 0
.....................................................................GGGAGATTTCCGAATGGGGA.................................................................................................................................................................. 20 3 16 0.13 2 0 0 0 0 0 2
......................................................................GGAGATTTCCGAATGGGG................................................................................................................................................................... 18 2 17 0.12 2 0 2 0 0 0 0
......................................................................AGAGATTTCCGAATGGGGA.................................................................................................................................................................. 19 3 20 0.10 2 0 0 1 0 0 1
.....................................................................CAGAGATTTCCGAATGGGGA.................................................................................................................................................................. 20 3 20 0.10 2 0 0 2 0 0 0
....................................................................TCGGAAATTTCCGAGTGGGGAAAAT.............................................................................................................................................................. 25 0 13 0.08 1 1 0 0 0 0 0
.....................................................................CGGAGATTTCCGAATGGGGAAAC............................................................................................................................................................... 23 3 13 0.08 1 0 0 1 0 0 0
.............................................................TACCCACTCGGAAATTTCCGA......................................................................................................................................................................... 21 0 13 0.08 1 0 0 0 1 0 0
.....................................................................CGGAAATTTCCGAGTGGGGAAAATACC........................................................................................................................................................... 27 0 13 0.08 1 1 0 0 0 0 0
.....................................................................CGGAGATTTCCGAATGGGG................................................................................................................................................................... 19 2 13 0.08 1 0 1 0 0 0 0
..........................................TGGGTATGGTGGGTAGTTGTACC.......................................................................................................................................................................................... 23 0 13 0.08 1 1 0 0 0 0 0
....................................................................TCGGAAATTTCCGAGTGGGGAAAATAC............................................................................................................................................................ 27 0 13 0.08 1 1 0 0 0 0 0
......................................................................GGAAATTTCCGAATGGGGAAAC............................................................................................................................................................... 22 2 13 0.08 1 0 0 1 0 0 0
.....................................................................CGGAGATTTCCGAATGGGGAAA................................................................................................................................................................ 22 2 13 0.08 1 0 0 1 0 0 0
............................................GGCATGGTGGGTATTTGTACC.......................................................................................................................................................................................... 21 2 13 0.08 1 1 0 0 0 0 0
.........................................................................AATTTCCGAGTGGGGAAAATAC............................................................................................................................................................ 22 0 13 0.08 1 1 0 0 0 0 0
........................................TATGGGTATGGTGGGTAGTTTTAC........................................................................................................................................................................................... 24 1 13 0.08 1 0 0 0 1 0 0
.....................................TAATATGGGTATGGTGGGTAGTTGTACC.......................................................................................................................................................................................... 28 0 13 0.08 1 1 0 0 0 0 0
......................................AATATGGGTATGCTGGGTAGTTGTAC........................................................................................................................................................................................... 26 1 13 0.08 1 0 0 1 0 0 0
.....................................................................CGGAGATTTCCGAGTGGAGAAAC............................................................................................................................................................... 23 3 13 0.08 1 0 0 1 0 0 0
.............................................GTATGGTGGGTAGTTTGAC........................................................................................................................................................................................... 19 2 14 0.07 1 0 0 0 1 0 0
......................................AATATGGGTATGGTGGGTAGTT............................................................................................................................................................................................... 22 0 14 0.07 1 0 1 0 0 0 0
..........................GGCCCGGCGGATAATATGGGTATGG........................................................................................................................................................................................................ 25 0 14 0.07 1 0 1 0 0 0 0
...........................GCCCGGCGGATAATATGGGTATGG........................................................................................................................................................................................................ 24 0 14 0.07 1 0 0 0 1 0 0
............................CCCGGCGGATAATATGGGTATTG........................................................................................................................................................................................................ 23 1 14 0.07 1 0 0 0 1 0 0
....................................ATAATATGGGTATGGTGGGTAG................................................................................................................................................................................................. 22 0 14 0.07 1 0 1 0 0 0 0
.....................................................................CGCAGATTTCCGAATGGGGAA................................................................................................................................................................. 21 3 14 0.07 1 0 0 0 0 1 0
......................................AATATGGGTATGGTGGGTAGTTGTAAA.......................................................................................................................................................................................... 27 2 14 0.07 1 0 1 0 0 0 0
.....................................TAATATGGGCATGGTGGGTAGTTGT............................................................................................................................................................................................. 25 1 14 0.07 1 1 0 0 0 0 0
.....................................TAATATGGGTATAGTGGGTAGT................................................................................................................................................................................................ 22 1 14 0.07 1 1 0 0 0 0 0
.....................................TAATATGGGTATGGTGGGTAGTT............................................................................................................................................................................................... 23 0 14 0.07 1 0 1 0 0 0 0
........................................TGTGGGTATGGTGGGTAGTTGC............................................................................................................................................................................................. 22 2 14 0.07 1 1 0 0 0 0 0
............................CCCGGCGGATAATATGGGTATGGTGG..................................................................................................................................................................................................... 26 0 14 0.07 1 1 0 0 0 0 0
......................................AATATGGGTATGGTGGGTAG................................................................................................................................................................................................. 20 0 14 0.07 1 0 1 0 0 0 0
.....................................TGATATGGGTATGGTGGGTAGT................................................................................................................................................................................................ 22 1 14 0.07 1 1 0 0 0 0 0
.....................................TAATATGGGTATGGTGGGTAGTC............................................................................................................................................................................................... 23 1 14 0.07 1 1 0 0 0 0 0
.............................................GTATGGTGGGTAGTTTTA............................................................................................................................................................................................ 18 1 14 0.07 1 0 0 0 0 1 0
.....................................TAATATGGGTATGGTGGGTA.................................................................................................................................................................................................. 20 0 14 0.07 1 0 1 0 0 0 0
...................................GATAATATGGGTATGGTGGGTAGTTG.............................................................................................................................................................................................. 26 0 14 0.07 1 0 1 0 0 0 0
............................CCCGGCGGGTAATATGGGTATGGT....................................................................................................................................................................................................... 24 1 14 0.07 1 0 1 0 0 0 0
............................CCAGGCGGATAATATGGGTATGG........................................................................................................................................................................................................ 23 1 14 0.07 1 1 0 0 0 0 0
.................................CGGATAATATGGGTATGGTGG..................................................................................................................................................................................................... 21 0 14 0.07 1 0 1 0 0 0 0
...................................GATAATATGGGTATGGTGGGC................................................................................................................................................................................................... 21 1 14 0.07 1 1 0 0 0 0 0
............................CCCGGCGGATAATATGGGTATCGT....................................................................................................................................................................................................... 24 1 14 0.07 1 0 0 0 1 0 0
........................................................................AGATTTCCGAATGGGGAAAAGA............................................................................................................................................................. 22 3 15 0.07 1 0 1 0 0 0 0
.....................................................................CGGAGATTTCAGAATGGGGA.................................................................................................................................................................. 20 3 15 0.07 1 0 0 1 0 0 0
..................................................................................................................................................................................................AAGTTTTTGAAAAACAAAA...................................... 19 1 16 0.06 1 1 0 0 0 0 0
.....................................................................CTGAGATTTCCGAATGGGGA.................................................................................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 1
.............................................................................................................GAAAATTGAACAACAAAAGA.......................................................................................................................... 20 2 18 0.06 1 1 0 0 0 0 0
.............................................GTATGGTGGGTAGTTTGACT.......................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0
.....................................................................CGGAGATTTCCGAATGGG.................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

AGGTGCTAAATGCATTCGTTGTCGGTCCGGGCCGCCTATTATACCCATACCACCCATCAACATGGGTGAGCCTTTAAAGGCTCACCCCTTTTATGGGTGACCCTAACAACTTTTAAATTGTCGTTTTCTTATAAAATAACCTAAAAAGAGTTGAGGATTATGCTTTAGTCTTTGGGATAAATTGGAACAAGTTCTTCAAAAACTTTTTGTATTAAATAGTTAAAGGTTTGACTCCCCAGTTACAATGCTAC
***************************************************************************.((.............((((((((..(((((((...(((.((((.....)))).))))))))))..))).)))))................))*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V055
head
 V105
male body
.....................................................................................................................................................................TAGTCTTTGGGATAAATTGGAACAA............................................................. 25 0 4 1.75 7 5 2 0 0 0
......................................................................................................................................................................AGTCTTTGGGATAAATTGGAACAA............................................................. 24 0 4 1.25 5 1 3 1 0 0
.....................................................................................................................................................................TAGTCTTTGGGATAAATTGGAACAAG............................................................ 26 0 4 1.00 4 3 1 0 0 0
....................................................................................................................................................................TTAGTCTTTGGGATAAATTGGAACAA............................................................. 26 0 4 1.00 4 3 0 1 0 0
.......................................................................................................................................................................GTCTTTGGGATAAATTGGAACAA............................................................. 23 0 4 0.75 3 2 1 0 0 0
......................................................................................................................TGTCGTTTTCTTATAAAATAACCTAAA.......................................................................................................... 27 0 4 0.50 2 2 0 0 0 0
............................................................................................................................................................................................................................TAAAGGTTTGACTCCCCAGTTACAAT..... 26 0 4 0.50 2 2 0 0 0 0
................................................................................................................................................................................................................................GGTTTGACTCCCCAGTTACAATG.... 23 0 4 0.50 2 1 1 0 0 0
............................................................................................ATGGGTGACCCTAACAACTTTTTAAT..................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0
.............................................................................................TGGGTGACCCTAACAACTTTTA........................................................................................................................................ 22 0 3 0.33 1 1 0 0 0 0
..................................................................................................GACCCTAACAACTTTTAAATTGTCGTTT............................................................................................................................. 28 0 3 0.33 1 0 1 0 0 0
.................................................................................................TGACCCTAACAACTTTTAAATTGTCGTTT............................................................................................................................. 29 0 3 0.33 1 1 0 0 0 0
..........................................................................................................CAACTTTTAAATTGTCGGTTTCTTAT....................................................................................................................... 26 1 3 0.33 1 0 1 0 0 0
...............................................................................................GGAGACCCTAACAACTTTTAAATTGT.................................................................................................................................. 26 1 3 0.33 1 1 0 0 0 0
.....................................................................................................CCTAACAACTTTTAAATTGTCGTTTT............................................................................................................................ 26 0 3 0.33 1 1 0 0 0 0
............................................................................................ATGGGTGACCCTAACAACTTTTAAAT..................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
...........................................................................................TATGGGTGACCCTAACAACTTTTAAAT..................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0
.....................................................................................CCCTTTTATGGGTGACCCTAACAACT............................................................................................................................................ 26 0 3 0.33 1 1 0 0 0 0
....................................................................................................CCCTAACAACTTTTAAATTGTCGTTT............................................................................................................................. 26 0 3 0.33 1 0 1 0 0 0
..................................................................................................GACCCTAACAACTTTTAAATTGTCGTT.............................................................................................................................. 27 0 3 0.33 1 0 1 0 0 0
.........................................................................................................................................................................................................................AGTTAAAGGTTTGACTCCCCAGTTACA....... 27 0 4 0.25 1 1 0 0 0 0
....................................................................................................................................................................TTAGTCCTTGGGATAAATTGGAACAA............................................................. 26 1 4 0.25 1 1 0 0 0 0
.....................................................................................................................................................................CAGTCTTTGGGATAAATTGGAACAA............................................................. 25 1 4 0.25 1 1 0 0 0 0
............................................................................................................................................................................TGGGATAAATTGGAACAAGTT.......................................................... 21 0 4 0.25 1 0 0 1 0 0
....................................................................................................................................................................................................................................TGACTCCCCAGTTACAATGCTAC 23 0 4 0.25 1 0 0 1 0 0
....................................................................................................................................................................TTAGTCTTTGGGATAAATTGGAACAATT........................................................... 28 1 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................................CTTTGGGATAAATTGGAACAATT........................................................... 23 1 4 0.25 1 1 0 0 0 0
............................................................................................................................................................................CGGGATAAATTGGAACAAGTTTTTCA..................................................... 26 2 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................................CTTTGGGATAAATTGGAACAA............................................................. 21 0 4 0.25 1 1 0 0 0 0
.............................................................................................................................................................................................................................AAAGGTTTGACTCCCCAGTTACAATG.... 26 0 4 0.25 1 0 1 0 0 0
....................................................................................................................................................................TTAGTCTTTGGGATACATTGGAACAA............................................................. 26 1 4 0.25 1 1 0 0 0 0
..................................................................................................................................................................CTTTAGTCTTTGGGATAAATTGGAACAA............................................................. 28 0 4 0.25 1 1 0 0 0 0
.........................................................................................................................TTTTTTCTTATAAAATAACCTAAA.......................................................................................................... 24 2 4 0.25 1 1 0 0 0 0
...................................................................................................................................................................................................................................TTGACTCCCCAGTTACAAGG.... 20 1 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................................CTTTGGGATAAATTGGAACAAGTTCT........................................................ 26 0 4 0.25 1 1 0 0 0 0
....................................................................................................................................................................TTAGTCTTTGGGATAAATTGGAACAAG............................................................ 27 0 4 0.25 1 1 0 0 0 0
...................................................................................................................................................................................................TCAAAAACTTTTTGTATTAAATATT............................... 25 1 4 0.25 1 1 0 0 0 0
.............................................................................................................................................................................................................................AAAGGTTTGACTCCCCAGTTACAATGCT.. 28 0 4 0.25 1 1 0 0 0 0
....................................................................................................................................................................................................................................CGACTCCCCAGTTACAATGCTAC 23 1 4 0.25 1 1 0 0 0 0
......................................................................................................................................................................AGTCTTTGGGATAAATTGGAACAATT........................................................... 26 1 4 0.25 1 1 0 0 0 0
.....................................................................................................................................................................................................................................GACTCCCCAGTTACAATGCTAC 22 0 4 0.25 1 0 1 0 0 0
............................................................................................................................................................................TGGGATAAATTGGAACAAGTTCTTCA..................................................... 26 0 4 0.25 1 1 0 0 0 0
.........................................................................................................................................AACCTAAAAAGAGTTGAGGATTATGCTT...................................................................................... 28 0 4 0.25 1 1 0 0 0 0
.....................................................................................................................................................................TAGTCTTTGGGATAAATTGGAAAAA............................................................. 25 1 4 0.25 1 1 0 0 0 0
.....................................................................................................................................................................................................................................GACTCCCCAGTTACAATGCT.. 20 0 4 0.25 1 1 0 0 0 0
............................................................................................................................................CTAAAAAGAGTTGAGGATTATGCTTT..................................................................................... 26 0 4 0.25 1 1 0 0 0 0
...................................................................................................................................................................................................................................TTGACTCCCCAGTTACAATGCT.. 22 0 4 0.25 1 1 0 0 0 0
....................................................................................................................................................................TTAGTCTTTGGGATAAATTGGAACA.............................................................. 25 0 4 0.25 1 1 0 0 0 0
...............................................................................................................................................................................................................................AGGTTTGACTCCCCAGTTACAATGTTAC 28 1 4 0.25 1 1 0 0 0 0
.................................................................................................................................................................................................................................GTTTGACTCCCCAGTTACAATGC... 23 0 4 0.25 1 0 1 0 0 0
.......................................................................................................................................................TGAGGATTATGCTTTAGTCTTTGGG........................................................................... 25 0 4 0.25 1 1 0 0 0 0
......................................................................................................................................................................AGTCTTTGGGATAAATTGGAACAT............................................................. 24 1 4 0.25 1 1 0 0 0 0
.............................................................................................................................................................................GGGATAAATTGGAACAAGTTCTTCAA.................................................... 26 0 4 0.25 1 0 1 0 0 0
.....................................................................................................................................................................TAGTCTTTGGGATAAATTGGAACA.............................................................. 24 0 4 0.25 1 0 1 0 0 0
...................................................................................................................................................................TTTAGTCTTTGGGATAAATTGGAAAAA............................................................. 27 1 4 0.25 1 1 0 0 0 0
...................................................................................................................................................................................................................................TTGACTCCCCAGTTACACTG.... 20 1 4 0.25 1 1 0 0 0 0
...................................................................GAGCCTTTAAAGGCTCACCCCTTTTAT............................................................................................................................................................. 27 0 13 0.23 3 3 0 0 0 0
..................TAGTCGTTCCGGGCCGCATA..................................................................................................................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0
..............................................................................................................................................AAAAAGAGTTGAGGACAAT.......................................................................................... 19 2 6 0.17 1 0 0 1 0 0
........................................................................................................................................................................TCTTTGGGATAAATGGGT................................................................. 18 2 20 0.15 3 0 1 0 1 1
..........................CCGGGCCGCCTATTATACCCA............................................................................................................................................................................................................ 21 0 14 0.14 2 2 0 0 0 0
............................GGGCCGCCTATTATACCCATACCACCCAT.................................................................................................................................................................................................. 29 0 14 0.14 2 1 1 0 0 0
............CATTCGTGGTCGGCGCGGGC........................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 1 0 0
........................................................................................................................................................................................GAACGCGTTCCTCAAAAACT............................................... 20 3 11 0.09 1 0 0 0 1 0
......................................................................................................................................................................................TGGATCAAGTTGCTCAAAAA................................................. 20 3 11 0.09 1 0 0 0 0 1
..................................................CACCCATCAACATGGGTGAGCCTTTCT.............................................................................................................................................................................. 27 2 13 0.08 1 1 0 0 0 0
........................................................CCAACATGGGTGAGCCTTTGA.............................................................................................................................................................................. 21 2 13 0.08 1 1 0 0 0 0
....................................................................AGCCTTTAAAGGCTCACCCCTTTTAT............................................................................................................................................................. 26 0 13 0.08 1 0 1 0 0 0
...................................................................GAGCCTTTAAAGGCTCACCCCTTGT............................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
........................................................TCAACATGGGTGAGCCTTTAAAGCCT......................................................................................................................................................................... 26 1 13 0.08 1 1 0 0 0 0
.................................................CCACCCATCAACATGGGTGAGCCTTT................................................................................................................................................................................ 26 0 13 0.08 1 1 0 0 0 0
....................................................CCCATCAACATGGGTGAGCCTTT................................................................................................................................................................................ 23 0 13 0.08 1 1 0 0 0 0
.........................TCCGGGCCGCCTATTATACCCATAC......................................................................................................................................................................................................... 25 0 14 0.07 1 1 0 0 0 0
........................GTCCGGGCCGCCTAGTATACCCA............................................................................................................................................................................................................ 23 1 14 0.07 1 0 1 0 0 0
........................GTCCGGGCCGCCTATTATACCCA............................................................................................................................................................................................................ 23 0 14 0.07 1 0 1 0 0 0
........................................ATACCCAAACCACCCAACAA............................................................................................................................................................................................... 20 2 14 0.07 1 1 0 0 0 0
.........................TCCGGGCCGCCTATTATACCCA............................................................................................................................................................................................................ 22 0 14 0.07 1 0 1 0 0 0
..................................CCTATTATACCCATACCACCCATCAACA............................................................................................................................................................................................. 28 0 14 0.07 1 0 1 0 0 0
...............................CCGCCTATTATACCCATACCACCCATCAA............................................................................................................................................................................................... 29 0 14 0.07 1 0 1 0 0 0
.....................................ATTATACCCATACCACCCATCAACAT............................................................................................................................................................................................ 26 0 14 0.07 1 0 1 0 0 0
..........................CCGGGCCGCCTATTATACCCATAC......................................................................................................................................................................................................... 24 0 14 0.07 1 1 0 0 0 0
..............................GCCGCCTATTATACCCATACCACCCAT.................................................................................................................................................................................................. 27 0 14 0.07 1 1 0 0 0 0
.........................TCCGGGCCGCCTATTATACCC............................................................................................................................................................................................................. 21 0 14 0.07 1 1 0 0 0 0
.............................GGCCGCCTATTATACCCATACCACCCA................................................................................................................................................................................................... 27 0 14 0.07 1 0 1 0 0 0
.........................CCCGGGCCGCCTATTATACCCA............................................................................................................................................................................................................ 22 1 14 0.07 1 1 0 0 0 0
........................GTCCGGGCAGCCTATTATACCCA............................................................................................................................................................................................................ 23 1 14 0.07 1 0 1 0 0 0
...............................CCGCCTATTATACCCATACCACCCATCA................................................................................................................................................................................................ 28 0 14 0.07 1 1 0 0 0 0
.......................................................................................................................................................................GTCTTTGAGATAAATGGG.................................................................. 18 2 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................................................ATGGAACTAGTTCTTCAA.................................................... 18 2 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:25464-25714 + dan_2827 TCCACG--------ATTTACGTAAGCA---------------ACAGCCAGGCCCGGCGGAT-AATATGGGTATGGTGGGTAGTTGTACCCACTCGGAAA-TTTCCGAGTGGGGAAAATACCCACTGGGATTG-----------------T-TGAAAATTTAACAGCAAAAGAATATTTTATTGGATTTTTC--T--CAACTCCTAATACGAAATCAGAAACCCTATTTAACCT-----TGTTCAAGAAGTTTTTGAAAAACATAATTTATCAATTTCCAAACTGAGGGGTCAATGTTACGATG
droBip1 scf7180000395082:15811-15981 + AAGTCTCCGTGTG-CATTAGAACCGTT---------------T---------CC--------------------------------------------------------------------------------------------------GATGATTTACTTGCAAATGAGAATTCTATTGAATTCTTT--T--CAACGCCAAACACTCAAGCAGAAACTTTATTCGATCT-----TCTTGACAACATTTTCGTCGGGAACTCGTTGCTTCTTTCAAAACTAAGAGGCCAGTGCTACGACG
droKik1 scf7180000302696:1151893-1152006 - TTTTGG--------GTGCGAAAAAAAA---------------TTGGG---------------------------------------------------------------------------------ATTGGGCATCGGAAGAGGAATA-TGAAACCTTGGCAGCAAAGCAAAATTTCTTTAGATTTTTATTT--TAATTTTTGGTAAGGAAACAGAA--------------------------------------------------------------------AC--------------
droFic1 scf7180000454008:24125-24266 + GAAG--------------------------------------------------------------------------------------------------------------------------------------------------------ACCTCACTGTTAACGAATATTTTCTCGGATTCTAC--A--CAACACCATCTACCAAAAGTGAAACATTATTCAAGAT-----TGTTGAGGACACGTTTATTCAATTCGGTTTGTCATTTGCGAAATTAAGAGGTCAATGTTTCGATG
droEle1 scf7180000491228:370938-371019 + AAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAAATATTTTTACCTTAATTTTTC--T--CAATTCCTA--------CCTAAAATACTTTTAAATCTAAGTGTGCTCAACAAATTA-----------------------------------TT--------------
droRho1 scf7180000777899:7093-7206 + CACTATTAGCAACGGCT-------------------------AGAGTCAGGGCCGGCGGTT-GACGTGGGTAGTATGGGTAGTAGTACCCACTCGGTAA-TGTCCGAGTGGGT-ATTTACCCACTC--------------------------------------------------------GAA------------AATATCA-----------GAGT--------------------------------------------------------------------AA--------------
droBia1 scf7180000302304:148167-148258 + TTGCAA--------ACTTCTGAATGAA---------------ATCAC--------------------------------------------------------------------TATACTCTTTGCAAGGG-----------------TATAAA-----AACAGCAAAAATATATTTTTTTACATTTTTTTCCGACAATTCCTA--------------------------------------------------------------------------------------------------
droTak1 scf7180000414435:10695-10752 + TGTAAT--------AGTTAAAAAGATA---------------TGA-----------------------------------------------------------------------------------------------------------------------ACAAAAGAAAATTTGTTTAAACTTTTT--T--TAACTTTT---------------------------------------------------------------------------------------------------
dm3 chrXHet:17218-17288 - ATCATG--------CTTTGCGTAAATATTTTAAATCGCTTCCACAGTCGG-GCTGGAGGTGTCA---TGGTATGGAGCGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--------------
droSim2 2l:22541170-22541193 + ATCATG--------ATTTGCGTAAAGA---------------GGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------
droSec2 scaffold_67:140866-140889 + ATCAGG--------ATTTGCGTAAGAA---------------GGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------
droYak3 2R:1173141-1173157 + TCCACG--------ATATGAGAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4512:580199-580236 + TTCATG--------ATCTCAGAAAGGA---------------AAGGCAT----------------------------------------------------ACCCGTGCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--------------
dp5 3:18287746-18287769 - TTCATG--------ATTTAAGTAAGAA---------------AGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--------------
droPer2 scaffold_141:33751-33774 - TTCATG--------ATTTAAGAAAGAA---------------AGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--------------
droWil2 scf2_1100000004762:6367726-6367828 + CAGG-----------------------------------------------GCCGGCGGCA-GCCTATGGTAGTATGGGTAGTACTACCCACTCGGAAAATTGCCGAGTGGGT-AATTACCCACT------------------------------------------------------------------------------------------AAAAGCATCTTCAAACTTAA------TCAAA-----------------------------------------AG--------------
droVir3 scaffold_13049:25085509-25085532 - TTCACG--------ATTTAAGGGAGGA---------------AGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------
droMoj3 scaffold_6473:3194297-3194320 + TCCATG--------ACCTACGCAAAGA---------------AGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--------------
droGri2 scaffold_15126:8362354-8362376 + GGCATG--------ATTTAAAGAAGTC---------------TCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCCACG--------ATTTACGTAAGCA---------------ACAGCCAGGCCCGGCGGAT-AATATGGGTATGGTGGGTAGTTGTACCCACTCGGAAA-TTTCCGAGTGGGGAAAATACCCACTGGGATTG-----------------T-TGAAAATTTAACAGCAAAAGAATATTTTATTGGATTTTTC--T--CAACTCCTAATACGAAATCAGAAACCCTATTTAACCT-----TGTTCAAGAAGTTTTTGAAAAACATAATTTATCAATTTCCAAACTGAGGGGTCAATGTTACGATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................T--CAACTCCTAATACGAAATCAGAAACCC................................................................................2845.50220220000
......................................................................................................................................................................................................................................................................TAATTTATCAATTTCCAAACTGAGGGGT.............2853.20163121000
..............................................................................................................................................................................................................TACGAAATCAGAAACCCTATTTAACC.......................................................................2641.757070000
...........................................................................................................................................................................................................TAATACGAAATCAGAAACCCTATTTAACC.......................................................................2941.757070000
...................................................................................................................................................................................................................................TAACCT-----TGTTCAAGAAGTTTTTGAAA.............................................2641.506060000
.............................................................................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGTCAAT.........2541.255050000
.........................................................................................................................................................................................................................................................................TTTATCAATTTCCAAACTGAGGGGTC............2651.005140000
...........................................................................................................................................................................................................................................................................TATCAATTTCCAAACTGAGGGGTCAAT.........2741.004040000
......................................................................................................................................................................................................................................................................TAATTTATCAATTTCCAAACTGAGGGG..............2751.005131000
.................................................................................................................................................................................................T--CAACTCCTAATACGAAATCAGAAACC.................................................................................2740.753030000
.....................................................................................................................................................................................................AACTCCTAATACGAAATCAGAAACCC................................................................................2640.753030000
...........................................................................................................................................................................................................................................................................TATCAATTTCCAAACTGAGGGGTC............2450.603030000
.............................................................................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGTCAAC.........2540.502020000
.............................................................................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGTCAATGT.......2740.502110000
.........................................................................................................................................................................................TTTTTC--T--CAACTCCTAATACGAAATCAGA.....................................................................................2940.502200000
..............................................................................................................................................................................................................................................................................CAATTTCCAAACTGAGGGGTCAAT.........2440.502110000
....................................................................................................................................................................................................CAACTCCTAATACGAAATCAGAAACCC................................................................................2740.502020000
..........................................................................................................................................................................................TTTTC--T--CAACTCCTAATACGAAATCAGA.....................................................................................2840.502200000
.........................................................................................................................................................................................................................................................................TTTATCAATTTCCAAACTGAGGGGTCA...........2740.502200000
............................................................T-AATATGGGTATGGTGGGTAGTTG..........................................................................................................................................................................................................................24140.436321000
............................................................T-AATATGGGTATGGTGGGTAGT............................................................................................................................................................................................................................22140.436240000
.............................................................................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGT.............2150.402020000
............................................................................................................TGGGGAAAATACCCACTGGGATTG-----------------T-T.......................................................................................................................................................2630.331100000
............................................................................................................TGGGGAAAATACCCACTGGGATTG-----------------C-........................................................................................................................................................2530.331010000
...................................................CCCGGCGGAT-AATATGGGTATGG....................................................................................................................................................................................................................................23140.294031000
............................................................T-AATATGGGTATGGTGGGTAG.............................................................................................................................................................................................................................21140.294031000
................................................................................................................................................................................................................CGAAATCAGAAACCCTATTTAACCT-----TGTT.............................................................2940.251100000
.....................................................................................................................................................................................................................................................................................CAAACTGAGGGGTCAATGTTACGATG2640.251010000
.......................................................................................................................................................................................................CTCCTAATACGAAATCAGAAACCCTA..............................................................................2640.251100000
...............................................................................................................................................................TAACAGCAAAAGAATATTTTATTGGA......................................................................................................................2640.251010000
...................................................................................................................................................................................................................................TAACCT-----TGTTCAAGAAGTTTTTGA...............................................2440.251010000
...................................................................................................................................................................................................................................TAACCT-----TGTTCAAGAAGTT....................................................1940.251100000
...........................................................................................................................................................................................................TAATACGAAATCAGAAACCCTATTTA..........................................................................2640.251010000
..........................................................................................................................................................................................................................................................................TTATCAATTTCCAAACTGAGGGGTCA...........2640.251010000
.............................................................................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGTCAA..........2440.251100000
...................................................................................................................................................................................................................................TAACCT-----TGTTCAAGAAGTTTTT.................................................2240.251001000
...............................................................................................................................................................TAACAGCAAAAGAATATTTTATTGGATT....................................................................................................................2840.251010000
.........................................................................................................................................................................................TTTTTC--T--CAACTCCTAATACGAAATCA.......................................................................................2740.251010000
...........................................................................................................................................................................................................TAATACGAAATCAGAAACCCTATTT...........................................................................2540.251010000
...................................................................................................................................................................................................................................................................................TCCAAACTGAGGGGTCAATGTTACGATG2840.251010000
.................................................................................................................................................................................................................................TTTAACCT-----TGTTCAAGAAGTTTTTGAA..............................................2740.251001000
...................................................................................................................................................................................................................................TAACCT-----TGTTCAAGAAGTTTTTGAAAAAC..........................................2940.251010000
......................................................................................................................................................................................................................................................................................AAACTGAGGGGTCAATGTTACGA..2340.251010000
......................................................................................................................................................................................................................................................................................AAACTGAGGGGTCAATGTTACGATG2540.251010000
.............................................................................................................................................................................................TC--T--CAACTCCTAATACGAAATCAGA.....................................................................................2540.251100000
...................................................................................................................................................................................................................................TAACCT-----TGTTCAAGAAGTTTTTGAA..............................................2540.251001000
..................................................................................................................................................................................................................................TTAACCT-----TGTTCAAGAAGTTTTTGA...............................................2540.251010000
...............................................................................................................................................................TAACAGCAAAAGAATATTTTATTGGATTT...................................................................................................................2940.251010000
.............................................................................................................................................................................................................ATACGAAATCAGAAACCCTAT.............................................................................2140.251010000
...............................................................................................................................................................................................................................................................................AATTTCCAAACTGAGGGGTCAATGT.......2540.251100000
.................................................................................................................................................................................................T--CAACTCCTAATACGAAATCAGAAACCG................................................................................2840.251010000
..........................................................................................................................................................................................TTTTC--T--CAACTCCTAATACGAAATCA.......................................................................................2640.251100000
....................................................................................................................................................................................................................................................................................CCAAACTGAGGGGTCAATGTTACGA..2540.251010000
...............................................................................................................................................................................................................................................................................AATTTCCAAACTGAGGGGTCAAT.........2340.251010000
..................................................................................................................................................................................................................................................................................TTCCAAACTGAGGGGTCAATGTTACGATG2940.251100000
...................................................................................................................................................................................................................................................................................TCCAAACTGAGGGGTCAATGTTACGAT.2740.251010000
...........................................................................................................................................................................................................TAATACGAAATCAGAAACCCTATTTAAC........................................................................2840.251010000
..........................................................................................................................................................................................................................AACCCTATTTAACCT-----TGTTCAAGAAGT.....................................................2740.251010000
................................................................................................................................................................................................................................................................................ATTTCCAAACTGAGGGGTCAATGC.......2440.251010000
...........................................................................................................................................................................................TTTC--T--CAACTCCTAATACGAAATCAGA.....................................................................................2740.251010000
...........................................................................................................................................................................................................TAATACGAAATCAGAAACCCTATT............................................................................2440.251010000
..............................................................................................................................................................................................C--T--CAACTCCTAATACGAAATCAGAAACCC................................................................................2940.251010000
...................................................................................................................................................................................................................................TAACCT-----TGTTCAAGAAGTTTTTGAAAAA...........................................2840.251100000
...........................................................................................................................................................................................................................................................................TATCAATTTCCAAACTGAGGGGTCAAC.........2740.251010000
......................................................................................................................................................................................................ACTCCTAATACGAAATCAGAAACCC................................................................................2540.251010000
...........................................................................................................................................................................................................................................................................TATCAATTTCCAAACTGAGGGGTCAATGC.......2940.251010000
.................................................................................................................................................................................................T--CAACTCCTAATACGAAATCAGAAAC..................................................................................2640.251010000
....................................................CCGGCGGAT-AATATGGGTATGG....................................................................................................................................................................................................................................22140.213210000
............................................................T-AATATGGGTATGGTGGGTAGTTGTA........................................................................................................................................................................................................................26140.213210000
......................................................................................................................................................................................................................................................................TAATTTATCAATTTCCAAACTGAGGGT..............2750.201010000
..........................................................................................................................................................................................................................................................................TTATCAATTTCCAAACTGAGGGG..............2350.201001000
.............................................................................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGC.............2150.201010000
......................................................................................................................................................................................................................................................................TAATTTATCAATTTCCAAACTGAGGGGC.............2850.201010000
......................................................................................................................................................................................................................................................................TAATTTATCAATTTCCAAACTGAGG................2550.201010000
........................................................................................................................................................................................................................................................................ATTTATCAATTTCCAAACTGAGGGGT.............2650.201010000
.....................................................................................................................................................................................................................................................................ATAATTTATCAATTTCCAAACTGAG.................2550.201010000
..........................................................................................................................................................................................................................................................TTTTGAAAAACATAATTTATC................................2150.201010000
.........................................................................................................................................................................................................................................................................TTTATCAATTTCCAAACTGAGGGGT.............2550.201010000
...........................................................................................................................................................................................................................................................................TATCAATTTCCAAACTGAGGGG..............2250.201010000
......................................................................................................................................................................................................................................................................TAATTTATCAATTTCCAAACTGAGGG...............2650.201010000
...........................................................................................................................................................................................................................................................................TATCAATTTCCAAACTGAGGGGT.............2350.201010000
.........................................................................................................................................................................................................................................................................TTTATCAATTTCCAAACTGAGGGG..............2450.201100000
.......................................................................................................................................................................................................................................................................AATTTATCAATTTCCAAACTGAGGGG..............2650.201100000
..........................................................................................................................................................................................................................................................................TTATCAATTTCCAAACTGAGGGGT.............2450.201100000
.............................................................................................................................................................................................................................................................................TCAATTTCCAAACTGAGGGGTC............2250.201010000
............................................................................................TCGGAAA-TTTCCGAGTGGGGAAAATACC......................................................................................................................................................................................28130.152020000
............................................................T-AATATGGGTATGGTGGGTAGTTGTAC.......................................................................................................................................................................................................................27130.152110000
..........................................................GAT-AATATGGGTATGGTGGG................................................................................................................................................................................................................................20140.142011000
...................................................CCCGGCGGAT-AATATGGGTATGGT...................................................................................................................................................................................................................................24140.142020000
............................................................T-AATATGGGTATGGTGGGTAGTTGT.........................................................................................................................................................................................................................25140.142020000
..........................................................GAT-AATATGGGTATGGTGGGTA..............................................................................................................................................................................................................................22140.142020000
............................................................................................TCGGAAA-TTTCCGAGTGGGGAAAAT.........................................................................................................................................................................................25130.081010000
.....................................................................................TACCCACTCGGAAA-TTTCCGA....................................................................................................................................................................................................21130.081001000
.............................................................................................CGGAAA-TTTCCGAGTGGGGAAAATACC......................................................................................................................................................................................27130.081010000
..................................................................TGGGTATGGTGGGTAGTTGTACC......................................................................................................................................................................................................................23130.081010000
............................................................................................TCGGAAA-TTTCCGAGTGGGGAAAATAC.......................................................................................................................................................................................27130.081010000
.................................................................................................AA-TTTCCGAGTGGGGAAAATAC.......................................................................................................................................................................................22130.081010000
............................................................T-AATATGGGTATGGTGGGTAGTTGTACC......................................................................................................................................................................................................................28130.081010000
..............................................................AATATGGGTATGGTGGGTAGTT...........................................................................................................................................................................................................................22140.071100000
.................................................GGCCCGGCGGAT-AATATGGGTATGG....................................................................................................................................................................................................................................25140.071100000
..................................................GCCCGGCGGAT-AATATGGGTATGG....................................................................................................................................................................................................................................24140.071001000
...........................................................AT-AATATGGGTATGGTGGGTAG.............................................................................................................................................................................................................................22140.071100000
..............................................................AATATGGGTATGGTGGGTAGTTGTAAA......................................................................................................................................................................................................................27140.071100000
............................................................T-AATATGGGTATGGTGGGTAGTT...........................................................................................................................................................................................................................23140.071100000
...................................................CCCGGCGGAT-AATATGGGTATGGTGG.................................................................................................................................................................................................................................26140.071010000
..............................................................AATATGGGTATGGTGGGTAG.............................................................................................................................................................................................................................20140.071100000
............................................................T-AATATGGGTATGGTGGGTAGTC...........................................................................................................................................................................................................................23140.071010000
............................................................T-AATATGGGTATGGTGGGTA..............................................................................................................................................................................................................................20140.071100000
..........................................................GAT-AATATGGGTATGGTGGGTAGTTG..........................................................................................................................................................................................................................26140.071100000
........................................................CGGAT-AATATGGGTATGGTGG.................................................................................................................................................................................................................................21140.071100000
..........................................................GAT-AATATGGGTATGGTGGGC...............................................................................................................................................................................................................................21140.071010000
droBip1
AAGTCTCCGTGTG-CATTAGAACCGTT---------------T---------CC--------------------------------------------------------------------------------------------------GATGATTTACTTGCAAATGAGAATTCTATTGAATTCTTT--T--CAACGCCAAACACTCAAGCAGAAACTTTATTCGATCT-----TCTTGACAACATTTTCGTCGGGAACTCGTTGCTTCTTTCAAAACTAAGAGGCCAGTGCTACGACGSizeHit CountTotal NormTotal
No Reads
droKik1
TTTTGG--------GTGCGAAAAAAAA---------------TTGGG---------------------------------------------------------------------------------ATTGGGCATCGGAAGAGGAATA-TGAAACCTTGGCAGCAAAGCAAAATTTCTTTAGATTTTTATTT--TAATTTTTGGTAAGGAAACAGAA--------------------------------------------------------------------AC--------------SizeHit CountTotal NormTotal
No Reads
droFic1
GAAG--------------------------------------------------------------------------------------------------------------------------------------------------------ACCTCACTGTTAACGAATATTTTCTCGGATTCTAC--A--CAACACCATCTACCAAAAGTGAAACATTATTCAAGAT-----TGTTGAGGACACGTTTATTCAATTCGGTTTGTCATTTGCGAAATTAAGAGGTCAATGTTTCGATGSizeHit CountTotal NormTotal
No Reads
droEle1
AAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAAATATTTTTACCTTAATTTTTC--T--CAATTCCTA--------CCTAAAATACTTTTAAATCTAAGTGTGCTCAACAAATTA-----------------------------------TT--------------SizeHit CountTotal NormTotal
No Reads
droRho1
CACTATTAGCAACGGCT-------------------------AGAGTCAGGGCCGGCGGTT-GACGTGGGTAGTATGGGTAGTAGTACCCACTCGGTAA-TGTCCGAGTGGGT-ATTTACCCACTC--------------------------------------------------------GAA------------AATATCA-----------GAGT--------------------------------------------------------------------AA--------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTGCAA--------ACTTCTGAATGAA---------------ATCAC--------------------------------------------------------------------TATACTCTTTGCAAGGG-----------------TATAAA-----AACAGCAAAAATATATTTTTTTACATTTTTTTCCGACAATTCCTA--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGTAAT--------AGTTAAAAAGATA---------------TGA-----------------------------------------------------------------------------------------------------------------------ACAAAAGAAAATTTGTTTAAACTTTTT--T--TAACTTTT---------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ATCATG--------CTTTGCGTAAATATTTTAAATCGCTTCCACAGTCGG-GCTGGAGGTGTCA---TGGTATGGAGCGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................AGGTGTCA---TGGTATGGAGCGC...............................................................................................................................................................................................................................2123.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000010000000010000010000000000
...................................CGCTTCCACAGTCGG-GCTGGAAA....................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CACAGTCGG-GCTGGAGGTGTCA---TGG.........................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................GAGGTGTCA---TGGTATGGAGCG................................................................................................................................................................................................................................2121.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TTCCACAGTCGG-GCTGGAGGT...................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TAAATCGCTTCCACAGTCGG-GCTGGAA.....................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCCACAGTCGG-GCTGGAGGTGTCA---TGG.........................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................TTCCACAGTCGG-GCTGGAGGTGTCA---T...........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TGGAGGTGTCA---TGGTATGGAG..................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................TTTTAAATCGCTTCCACAGTCGG-GCT.........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................TCGCTTCCACAGTCGG-GCTGGAGGT...................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GCTGGAGGTGTCA---TGGTATGG....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................CTGGAGGTGTCA---TGGTATGGG...................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AATCGCTTCCACAGTCGG-GCTGGAG.....................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................CACAGTCGG-GCTGGAGGTGTC................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TTCCACAGTCGG-GCTGGAGGTGTCA---............................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CTTCCACAGTCGG-GCTGGAGGTGT.................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AATCGCTTCCACAGTCGG-GCTA........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
......................................TTCCACAGTCGG-GCTGGAGGTGC.................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GGAGGTGTCA---TGGTATGGAGC.................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TGGAGGTGTCA---TGGTATG.....................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATCATG--------ATTTGCGTAAAGA---------------GGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
ATCATG--------ATTTGCGTAAAGA---------------G....................................................................................................................................................................................................................................................................20110.09110000000000000000
droSec2
ATCAGG--------ATTTGCGTAAGAA---------------GGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TCCACG--------ATATGAGAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TTCATG--------ATCTCAGAAAGGA---------------AAGGCAT----------------------------------------------------ACCCGTGCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
TTCATG--------ATTTAAGTAAGAA---------------AGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTCATG--------ATTTAAGAAAGAA---------------AGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CAGG-----------------------------------------------GCCGGCGGCA-GCCTATGGTAGTATGGGTAGTACTACCCACTCGGAAAATTGCCGAGTGGGT-AATTACCCACT------------------------------------------------------------------------------------------AAAAGCATCTTCAAACTTAA------TCAAA-----------------------------------------AG--------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TTCACG--------ATTTAAGGGAGGA---------------AGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TCCATG--------ACCTACGCAAAGA---------------AGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GGCATG--------ATTTAAAGAAGTC---------------TCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:43 AM