ID:

dan_2814

 Coordinate:

scaffold_13339:2927954-2928104 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.4 -6.8 -6.6 -6.4

Flybase annnotation

exon [dana_GLEANR_14297:1]; CDS [Dana\GF13934-cds]; intron [Dana\GF13934-in]

No Repeatable elements found

mature
  1. scaffold_644:1085-1109 +
  2. scaffold_6730:245-269 +
  3. scaffold_13137:1292898-1292922 -
  4. scaffold_13240:43440-43464 +
  5. scaffold_13261:148740-148764 -
  6. scaffold_13269:40403-40427 +
  7. scaffold_13272:287644-287668 +
  8. dan_2814  scaffold_13339:2928061-2928085 -
star
  1. scaffold_6730:298-318 +
  2. scaffold_12916:4964849-4964869 -
  3. dan_925  scaffold_12943:1983633-1983653 -
  4. scaffold_13082:3401470-3401490 -
  5. scaffold_13240:43493-43513 +
  6. scaffold_13261:148691-148711 -
  7. scaffold_13269:40456-40476 +
  8. scaffold_13272:287697-287717 +
  9. dan_2814  scaffold_13339:2928012-2928032 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAAACTAAATGCAACCGTCAGAGGATCAGGAGGCAGCCTTGACGGATTAAGTAATTTCGCCTCTTCTTATCATCAAGCATTTCAAATTAATGTTCACAGAATTTCTTACTGCAACCGATTTTTTGTACCAGACGCCCAATCTGGGAGAAAATTTTTAGTCGATACAGGAGCCGACGTTTCGATCATTCCATACAGTACTATTCACAAGAATATACAAAACGCCAATCGCCATACACTCTTTGCAGCGAACG
*********************************************************************........((............((..((((((..((...........))..)))))))).............))************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V105
male body
.........TGCAACCGTCAGAGGATCAGGAGG.......................................................................................................................................................................................................................... 24 0 20 0.15 3 3 0 0 0
....................................................................................................................................................................................................................TACAAAACGCCAATCGCCATACACTCT............ 27 0 20 0.15 3 0 3 0 0
....................................................................................................................................................................................................................TACAAAACGCCAATCGCCATACACTCTT........... 28 0 20 0.15 3 2 1 0 0
...........................................................................................................................................................................................................................CGCCAATCGCCATACACTCTTTGCAGC..... 27 0 20 0.15 3 1 2 0 0
.....................................................................TCATCAAGCATTTCAAATTAATGTT............................................................................................................................................................. 25 0 8 0.13 1 1 0 0 0
...........................................................................................................................................................................................CCATACAGTACTATTCACAAGAATA....................................... 25 0 16 0.13 2 0 2 0 0
..........................................................................................................................TTGTACCAGACGCCCAATCTG............................................................................................................ 21 0 9 0.11 1 0 1 0 0
.....TAAATGCAACCGTCAGAGGATCAGG............................................................................................................................................................................................................................. 25 0 20 0.10 2 2 0 0 0
....................GAGGATCAGGAGGCAGCCTTGACG............................................................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0
.....TAAATGCAACCGTCAGAGGATCAGGA............................................................................................................................................................................................................................ 26 0 20 0.10 2 2 0 0 0
................................................................................................................AACGGATTTTTGGAACCAGACG..................................................................................................................... 22 3 10 0.10 1 1 0 0 0
...ACTAAATGCAACCGTCAGAGGATC................................................................................................................................................................................................................................ 24 0 20 0.10 2 2 0 0 0
..AACTAAATGCAACCGTCAGAGGATCAG.............................................................................................................................................................................................................................. 27 0 20 0.10 2 0 2 0 0
........................................................................................................................................................................................ATTCCATAAAGTACTATTCACAAGAATA....................................... 28 1 16 0.06 1 0 1 0 0
.................................CAGCCTTGACGGATTAAGTAATTTCGC............................................................................................................................................................................................... 27 0 16 0.06 1 1 0 0 0
...............................................................................................................................................................................GTTTCGATCATTCCATACAGTACTA................................................... 25 0 16 0.06 1 1 0 0 0
...................................GCCTTGACGGATTAAGTAATTTCGCC.............................................................................................................................................................................................. 26 0 16 0.06 1 1 0 0 0
....................................................................................................................................................................................GATCATTCCATACAGTACTATTC................................................ 23 0 16 0.06 1 0 1 0 0
....................................................................................................................................................................................GATCATTCCATACAGTACTATTCAC.............................................. 25 0 16 0.06 1 0 1 0 0
....................................................................................................................................................................................GATCATTCCATACAGTACTATTCACA............................................. 26 0 16 0.06 1 1 0 0 0
...................................GCCTTGACGGATTAAGTAATTTCGC............................................................................................................................................................................................... 25 0 16 0.06 1 1 0 0 0
........................................................................................................................................................................................ATTCCATACAGTACTATTCACAA............................................ 23 0 16 0.06 1 1 0 0 0
...............................................................................................................................................................................GTTTCGATCATTCCATACAGTACTAT.................................................. 26 0 16 0.06 1 0 1 0 0
................................GCAGCCTTGACGGATTAAGTAATTTCG................................................................................................................................................................................................ 27 0 16 0.06 1 0 1 0 0
....................................CCTTGACGGATTAAGTAATTTCGCC.............................................................................................................................................................................................. 25 0 17 0.06 1 1 0 0 0
.............................GAGGCAGCCTTGACGGATTAAGTAAT.................................................................................................................................................................................................... 26 0 18 0.06 1 0 0 1 0
.............................GAGGCAGCCTTGACGGCTTCAGTACT.................................................................................................................................................................................................... 26 3 18 0.06 1 0 0 1 0
..............................................TTAAGTAATTTCGCCTCTTCTTATCATC................................................................................................................................................................................. 28 0 19 0.05 1 1 0 0 0
.................................................................................................................................................................................................................................TCGCCATACACTCTTTGCAGCGAACG 26 0 20 0.05 1 0 1 0 0
AAAACTAAATGCAACCGTCAGAGGAT................................................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
...........................AGGAGGCAGCCTTGACGGGTTAA......................................................................................................................................................................................................... 23 1 20 0.05 1 0 0 1 0
...............CGTCAGAGGATCAGGAGGCAGCC..................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................CGATACAGGAGCCGACGTTTCG...................................................................... 22 0 20 0.05 1 0 1 0 0
..................................................................................................................................................................................................................TATACAAAACGCCAATCGCCATACACTCT............ 29 0 20 0.05 1 0 1 0 0
................GTCAGAGGATCAGGAGGCAGCC..................................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
................................................................................................................................................................................................................AATATACAAAACGCCAATCGCCATACACT.............. 29 0 20 0.05 1 0 1 0 0
.................TCAGAGGATCAGGAGGCAGCCTTG.................................................................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0
.....................................................................................................................................................................................................CTATTCACAAGAATATACAAAACGCC............................ 26 0 20 0.05 1 1 0 0 0
..............................................................................................................................................................................................................................CAATCGCCATACACTCTTTGCAG...... 23 0 20 0.05 1 0 1 0 0
.........................................................................................................................................................................GCCGACGTTTCGATCATTCCATACA......................................................... 25 0 20 0.05 1 0 1 0 0
............................................................................................................................................................AGTCGATACAGGAGCCGACGTTTCGATC................................................................... 28 0 20 0.05 1 0 1 0 0
..................................................................................................................................................................................................................TATACAAAACGCCAATCGCCATACACT.............. 27 0 20 0.05 1 0 1 0 0
.AAATTAAATGCAACCGTCAGAGGAT................................................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................................TACAAAACGCCAATCGCCATACACTC............. 26 0 20 0.05 1 0 1 0 0
..................................................................................................................................................................TACAGGAGGCGACGTTTCGATCATT................................................................ 25 1 20 0.05 1 0 1 0 0
.........................................................................................................................................................................................................................AACGCCAATCGCCATACACTCTTTGC........ 26 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................................GAATATACAAAACGCCAATCGCCATA.................. 26 0 20 0.05 1 0 1 0 0
..................................................................................................................................................................TACAGGAGCCGACGTTTCGATCATTCC.............................................................. 27 0 20 0.05 1 1 0 0 0
...........................................................CCTCTTCTTATCATCAAGCATTTC........................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0
.............................................................................................................................................................................................................AAGAATATACAAAACGCCAATCGCCA.................... 26 0 20 0.05 1 1 0 0 0
............................................................................................................................................................................................................CAAGAATATACAAAACGCCAATCGCC..................... 26 0 20 0.05 1 1 0 0 0
....CTAAATGCAACCGTCAGAGGATCA............................................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0
..................................................................................................................................................................................................................TATACAAAACGCCAATCGCCATACACC.............. 27 1 20 0.05 1 1 0 0 0
...ACTAAATGCAACCGTCAGAGGATCAGG............................................................................................................................................................................................................................. 27 0 20 0.05 1 0 0 0 1
.....................AGGATCAGGAGGCAGCCTTGAC................................................................................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0
......................................................................................................................................................................................................................CAAAACGCCAATCGCCATACACTCTTTG......... 28 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

TTTTGATTTACGTTGGCAGTCTCCTAGTCCTCCGTCGGAACTGCCTAATTCATTAAAGCGGAGAAGAATAGTAGTTCGTAAAGTTTAATTACAAGTGTCTTAAAGAATGACGTTGGCTAAAAAACATGGTCTGCGGGTTAGACCCTCTTTTAAAAATCAGCTATGTCCTCGGCTGCAAAGCTAGTAAGGTATGTCATGATAAGTGTTCTTATATGTTTTGCGGTTAGCGGTATGTGAGAAACGTCGCTTGC
************************************************************************************************************........((............((..((((((..((...........))..)))))))).............))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V105
male body		 V039
embryo
 V055
head
 V106
head
.........................................................................................................................................................................CGGCTGCAAAGCTAGTAAGGTATGT......................................................... 25 0 20 4.10 82 59 15 5 3 0 0
.................................................................................................................TGGCTAAAAAACATGGTCTGCGGGT................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................AGAATGACGTTGGCTAAAAAACATGGT......................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................GGCTGCAAAGCTAGTAAGGTATGT......................................................... 24 0 20 0.75 15 11 2 1 1 0 0
.......................................................................................................................................................................CTCGGCTGCAAAGCTAGTAAGGT............................................................. 23 0 20 0.50 10 6 3 0 1 0 0
...................TCTCCTAGTCCTCCGTCGGAACTGCCT............................................................................................................................................................................................................. 27 0 20 0.45 9 8 1 0 0 0 0
.........................................................................................................................................................................CGGCTGCAAAGCTAGTAAGGTATG.......................................................... 24 0 20 0.45 9 8 1 0 0 0 0
...........................................................................................................................................AGACCCTCTTTTCAAAATCAGCTATGT..................................................................................... 27 1 8 0.38 3 3 0 0 0 0 0
......................................................................................................................................................................CCTCGGCTGCAAAGCTAGTAAGGT............................................................. 24 0 20 0.35 7 1 6 0 0 0 0
.........................................................................................................................................................................CGGCTGCAAAGCTAGTAAGGTATGTCAT...................................................... 28 0 20 0.35 7 7 0 0 0 0 0
.........................................................................................................................................................................CGGCTGCAAAGCTAGTAAGGTATTT......................................................... 25 1 20 0.35 7 0 7 0 0 0 0
..................................................................................................................................CTGCGGGTTAGACCCTCTTTTAAAAAT.............................................................................................. 27 0 6 0.33 2 0 2 0 0 0 0
..................................................................................................................................CTGCGGGTTAGACCCTCTTTTCAAAAT.............................................................................................. 27 1 6 0.33 2 0 1 1 0 0 0
.........................AGTCCTCCGTCGGAACTGCCTAATTCAT...................................................................................................................................................................................................... 28 0 20 0.30 6 6 0 0 0 0 0
......................CCTAGTCCTCCGTCGGAACTGCCT............................................................................................................................................................................................................. 24 0 20 0.30 6 4 2 0 0 0 0
....................CTCCTAGTCCTCCGTCGGAACTGCCT............................................................................................................................................................................................................. 26 0 20 0.30 6 6 0 0 0 0 0
......................................................................................................................................................................CCTCGGCTGCAAAGCTAGTAAGGTATGT......................................................... 28 0 19 0.26 5 4 1 0 0 0 0
............................................................................................................................................GACCCTCTTTTAAAAATCAGCTATGT..................................................................................... 26 0 8 0.25 2 2 0 0 0 0 0
.....................TCCTAGTCCTCCGTCGGAACTGCCT............................................................................................................................................................................................................. 25 0 20 0.25 5 5 0 0 0 0 0
.......................CTAGTCCTCCGTCGGAACTGCCT............................................................................................................................................................................................................. 23 0 20 0.20 4 2 2 0 0 0 0
..............................................................................................................................................................AGCTATGTCCTCGGCTGCAAAGCTAGT.................................................................. 27 0 20 0.20 4 4 0 0 0 0 0
..................................................CATTAAAGCGGAGAAGAATAGTAGT................................................................................................................................................................................ 25 0 20 0.20 4 1 1 0 2 0 0
...............................................................................................................................................................GCTATGTCCTCGGCTGCAAAGCTAGT.................................................................. 26 0 20 0.20 4 3 1 0 0 0 0
.........................AGTCCTCCATCGGAACTGCCTAATTCAT...................................................................................................................................................................................................... 28 1 20 0.20 4 4 0 0 0 0 0
.........................AGTCCTCCGTCGGAACTGCCTAAT.......................................................................................................................................................................................................... 24 0 20 0.20 4 4 0 0 0 0 0
.........................AGTCCTCCGTCGGAACTGCCTAATT......................................................................................................................................................................................................... 25 0 20 0.20 4 2 2 0 0 0 0
..................................................................................................................................CTGCGGGTTAGACCCTCTTTTCATAAT.............................................................................................. 27 2 6 0.17 1 0 1 0 0 0 0
.................................................................................................................................TCTGCGGGTTAGACCCTCTTTTAAAAAT.............................................................................................. 28 0 6 0.17 1 0 1 0 0 0 0
.......................................................................................................................................................................CTCGGCTGCAAAGCTAGTAAGGTATGT......................................................... 27 0 19 0.16 3 3 0 0 0 0 0
......................CCTAGTCCTCCGTCGGAACTGCCTAAT.......................................................................................................................................................................................................... 27 0 20 0.15 3 2 1 0 0 0 0
......................................................................................................................................................................CCTCGGCTGCAAAGCTAGTAAGTT............................................................. 24 1 20 0.15 3 0 3 0 0 0 0
.......TTACGTTGGCAGTCTCCTAGTCCTCCAT........................................................................................................................................................................................................................ 28 1 20 0.15 3 3 0 0 0 0 0
.................................................TCATTAAAGCGGAGAAGAATAGTAGT................................................................................................................................................................................ 26 0 20 0.15 3 1 0 0 2 0 0
...........................................................................................................................................................................GCTGCAAAGCTAGTAAGGTATGT......................................................... 23 0 20 0.15 3 3 0 0 0 0 0
.............................................................................................................................................................CAGCTATGTCCTCGGCTGCAAAGCTAGT.................................................................. 28 0 20 0.15 3 3 0 0 0 0 0
......................................................................................................................................................................CCTCGGCTGCAAAGCTAGTAAGGTAT........................................................... 26 0 20 0.15 3 2 1 0 0 0 0
..........................................................CGGAGAAGAATAGTAGTTCGTAAAGT....................................................................................................................................................................... 26 0 20 0.15 3 1 2 0 0 0 0
.....................................................TAAAGCGGAGAAGAATAGTAGTTCGT............................................................................................................................................................................ 26 0 20 0.15 3 3 0 0 0 0 0
................................................................................................................................................................CTATGTCCTCGGCTGCAAAGCTAGT.................................................................. 25 0 20 0.15 3 3 0 0 0 0 0
..................................................CATTAAAGCGGAGAAGAATAGTAGTT............................................................................................................................................................................... 26 0 20 0.15 3 0 1 1 1 0 0
.......................................................................................................................................................................CTCGGCTGCAAAGCTAGTAAGGTAT........................................................... 25 0 20 0.15 3 1 2 0 0 0 0
..................................................................................................................................................................................................................ATATGTTTTGCGGTTAGCGGTATGT................ 25 0 20 0.15 3 3 0 0 0 0 0
...................................CGGAACTGCCTAATTCATTAAAGCGGAG............................................................................................................................................................................................ 28 0 15 0.13 2 2 0 0 0 0 0
...........................................................................................................................................AGACCCTCTTTTAAAAATCAGCTAT....................................................................................... 25 0 8 0.13 1 1 0 0 0 0 0
...........................................................................TCGTAAAGTTTAATTACAAGTGTCTT...................................................................................................................................................... 26 0 8 0.13 1 1 0 0 0 0 0
..............................................................................................................................................................................GCAAAGCTAGTAAGGTATGTCATGAT................................................... 26 0 16 0.13 2 2 0 0 0 0 0
...........................................................................CCGTAAAGTTTAATTACAAGTGTCTT...................................................................................................................................................... 26 1 8 0.13 1 0 1 0 0 0 0
........................................................................................................................................GTTAGACCCTCTTTTAAAGATCAGCTA........................................................................................ 27 1 8 0.13 1 1 0 0 0 0 0
.............................................................................................................................................ACCCTCTTTTAAAAATCAGCTATGTCCT.................................................................................. 28 0 8 0.13 1 1 0 0 0 0 0
...............................................................................................................................................CCTCTTTTCAAAATCAGCTATGTCCT.................................................................................. 26 1 8 0.13 1 1 0 0 0 0 0
................................................................................................................................................................................AAAGCTAGTAAGGTATGTCATGATAAG................................................ 27 0 16 0.13 2 0 0 2 0 0 0
...........................................................................TCGTAAAGTTTAATTACAAGTGTCGT...................................................................................................................................................... 26 1 8 0.13 1 0 1 0 0 0 0
...........................................................................................................................................AGACCCTCTTTTCAAAATCAGCTAT....................................................................................... 25 1 8 0.13 1 1 0 0 0 0 0
...............................................................................................................................................CCTCTTTTAAAAATCAGCTAGGTCCT.................................................................................. 26 1 8 0.13 1 0 1 0 0 0 0
.........................................................................................................................................................................CGGCTGCAAAGCTAGTGAGGTATGT......................................................... 25 1 20 0.10 2 1 0 0 1 0 0
........................................................................................................................................................................TCGGCTGCAAAGCTAGTAAGGTAT........................................................... 24 0 20 0.10 2 0 1 0 1 0 0
.........................................................................................................................................................................CGGCTGCAAAGCTAGTAAGGTATGTC........................................................ 26 0 20 0.10 2 2 0 0 0 0 0
...........GTTGGCAGTCTCCTAGTCCTCCGTCG...................................................................................................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0
.........................AGTCCTCCGTCGGAACTGCCT............................................................................................................................................................................................................. 21 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................................................................CTATGTCCTCGGCTGCAAAGCTAGTAAG............................................................... 28 0 20 0.10 2 2 0 0 0 0 0
.................AGTCTCCTAGTCCTCCGTCGGAACTGCCT............................................................................................................................................................................................................. 29 0 20 0.10 2 2 0 0 0 0 0
............................CCTCCGTCGGAACTGCCTAATTCAT...................................................................................................................................................................................................... 25 0 20 0.10 2 1 1 0 0 0 0
........................................................................................................................................................................TCGGCTGCAAAGCTAGTAAGGTATG.......................................................... 25 0 20 0.10 2 1 1 0 0 0 0
........................................................................................................................................................................TCGGCTGCAAAGCTAGTAAGGT............................................................. 22 0 20 0.10 2 0 2 0 0 0 0
...........GTTGGCAGTCTCCTAGTCCTCCGT........................................................................................................................................................................................................................ 24 0 20 0.10 2 2 0 0 0 0 0
......................CCTAGTCCTCCGTCGGAACTGACT............................................................................................................................................................................................................. 24 1 20 0.10 2 0 2 0 0 0 0
.................................................TCATTAAAGCGGAGAAGAATAGTAGTT............................................................................................................................................................................... 27 0 20 0.10 2 1 1 0 0 0 0
.......TTACGTTGGCAGTCTCCTAGTCCT............................................................................................................................................................................................................................ 24 0 20 0.10 2 2 0 0 0 0 0
.......................................................................................................................................................................CTCGGCTGCAAAGCTAGTAAGGTATG.......................................................... 26 0 20 0.10 2 1 1 0 0 0 0
................................................................................................................................................................................................................TTATATGTTTTGCGGTTAGCGGTATGT................ 27 0 20 0.10 2 1 1 0 0 0 0
................................................TTCATTAAAGCGGAGAAGAATAGTAG................................................................................................................................................................................. 26 0 20 0.10 2 0 0 2 0 0 0
.................................................................................................................................................................TATGTCCTCGGCTGCAAAGCTAGT.................................................................. 24 0 20 0.10 2 1 1 0 0 0 0
......................CCTAGTCCTCCGTCGGAACTGCCTA............................................................................................................................................................................................................ 25 0 20 0.10 2 2 0 0 0 0 0
...............................................................................................................................................................................................................CTTATATGTTTTGCGGTTAGCGGTAT.................. 26 0 20 0.10 2 2 0 0 0 0 0
.........................................................................................................................................................................CGGCTGCAAAGCTAGTAAGGTATGTCA....................................................... 27 0 20 0.10 2 1 1 0 0 0 0
....................................................................................................................................................................GTCCTCGGCTGCAAAGCTAGTAAGGT............................................................. 26 0 20 0.10 2 2 0 0 0 0 0
........................................................................................................................................................................TCGGCTGCAAAGCTAGTAAGGTATGT......................................................... 26 0 20 0.10 2 1 1 0 0 0 0
............................CCTCCGTCGGAACTGCCTAATTCATT..................................................................................................................................................................................................... 26 0 20 0.10 2 1 1 0 0 0 0
......................................................................................................................................................................................AGTAAGGTATGTCATGATAAGTGTT............................................ 25 0 16 0.06 1 0 1 0 0 0 0
....................................................................................................................................................................................CTAGTAAGGTATGTCATGATAAGTGTT............................................ 27 0 16 0.06 1 1 0 0 0 0 0
...............................................................................................................................................................................CAAAGCTAGTAAGGTATGTCATGAT................................................... 25 0 16 0.06 1 0 0 0 0 1 0
.........................................................................................................................................................................................AAGGTATGTCATGATAAGTGTTCTT......................................... 25 0 16 0.06 1 0 1 0 0 0 0
.................................GTCGGAACTGCCTAATTCATTAAAG................................................................................................................................................................................................. 25 0 16 0.06 1 1 0 0 0 0 0
...............................CCGTCGGAACTGACTAATTCATTAAAG................................................................................................................................................................................................. 27 1 16 0.06 1 0 1 0 0 0 0
...............................CCGTCGGAACTGCCTAATTCATTAAAG................................................................................................................................................................................................. 27 0 16 0.06 1 1 0 0 0 0 0
................................................................................................................................................................................AAAGCTAGTAAGGTATGTCATGATAA................................................. 26 0 16 0.06 1 0 0 1 0 0 0
............................CCTCCGTCGGAACTGCCTAATTCATTAA................................................................................................................................................................................................... 28 0 18 0.06 1 1 0 0 0 0 0
............................CCTCCGTCGGAACTGCCTAATTCATTAAA.................................................................................................................................................................................................. 29 0 18 0.06 1 1 0 0 0 0 0
................................CGTCGGAACTGCCTAATTCATTAAA.................................................................................................................................................................................................. 25 0 18 0.06 1 0 1 0 0 0 0
...............................CCGTCGGAACTGCCTAATTCATTAA................................................................................................................................................................................................... 25 0 18 0.06 1 0 1 0 0 0 0
...............................CCGTCGGAACTGCCTAATTCATTAAA.................................................................................................................................................................................................. 26 0 18 0.06 1 0 1 0 0 0 0
...........................................CCTAATTCATTAAAGCGGAGAAGAATAGT................................................................................................................................................................................... 29 0 19 0.05 1 1 0 0 0 0 0
....................CTCCTAGTCCTCCGTCGGAATTGCCTAAT.......................................................................................................................................................................................................... 29 1 19 0.05 1 1 0 0 0 0 0
...............................CCATCGGAACTGCCTAATTCATTAAA.................................................................................................................................................................................................. 26 1 19 0.05 1 1 0 0 0 0 0
....................CTCCTAGTCCTCCGTCGGAACTGCCTA............................................................................................................................................................................................................ 27 0 19 0.05 1 1 0 0 0 0 0
...........................................................GGAGAAGAATAGTAGTTCGTAAAGT....................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.............TGGCAGTCTCCTAGTCCTCCGTCGGAACT................................................................................................................................................................................................................. 29 0 20 0.05 1 1 0 0 0 0 0
.......................CTAGTCCTCCGTCGGAACTGCCTA............................................................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0 0 0
.........................................TGCCTAATTCATTAAAGCGGAGAAGAAT...................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
...........................CCCTCCCTCGGAACTGCCTAATTCAT...................................................................................................................................................................................................... 26 2 20 0.05 1 0 1 0 0 0 0
..................................................CATTAAAGCGGAGAAGAATAGTAGTTC.............................................................................................................................................................................. 27 0 20 0.05 1 0 0 1 0 0 0
.........................................................GCGGAGAAGAATAGTAGTTCGTAAA......................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
........................................................AGCGGAGAAGAATAGTAGTTCGTAA.......................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
............................CCTCCGTCGGAACTGCCTAATTC........................................................................................................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0 0
............................CCTCCGTCGGAACTGCCTAAGT......................................................................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0
..........................................................CGGAGAAGAATAGTAGTTC.............................................................................................................................................................................. 19 0 20 0.05 1 0 1 0 0 0 0
........................CCCTCCTCCGTCGGAACTGCCT............................................................................................................................................................................................................. 22 3 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................................................................GGCTGCAAAGCTAGTAAGGT............................................................. 20 0 20 0.05 1 1 0 0 0 0 0
............................................................................................AAGTGTCTTAAAGAATGGCGTTGGCT..................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
................................................TTCATTAAAGCGGATAAGAATAGTCG................................................................................................................................................................................. 26 2 20 0.05 1 0 0 0 1 0 0
.........................................................................................................................................................................CGGCTGCAAAGCTAGTAAGGT............................................................. 21 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................TCCTCGGCTGCAAAGCTAGTAAGGT............................................................. 25 0 20 0.05 1 1 0 0 0 0 0
..............................TCCGTCGGAACTGACTAATTCATT..................................................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................................................................................................ATGTTTTGCGGTTAGCGGTATGTGAG............. 26 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................GTCCTCGGCTGCAAAGCGAGTAAGGT............................................................. 26 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................CAGCTATGTCCTCGGTTGCATAGCTAGTA................................................................. 29 2 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................CGGCTGCCAAGCTAGTAAGGTATGT......................................................... 25 1 20 0.05 1 0 0 1 0 0 0
.....................................................................................................................................................................TCCTCGGCTGCAAAGCGAGTAAGGT............................................................. 25 1 20 0.05 1 1 0 0 0 0 0
................................CGTCGGAACTGCCTAATTCATT..................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
..............................TCCGTCGGAACTGCCTAATTCAT...................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................CCTCGGCTGCAAAGCTAGTAAGGGA............................................................ 25 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................TGGTCTGTGGGTTTGACGCT......................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0
.TTTGATTTACGTTGGCAGTCTCCTAGT............................................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................TGTCCTCGGCTGCAAAGCTAGTAAG............................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.............TGGCAGTCTCCTAGTCCTCCGTCG...................................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
..................GTCTCCTAGTCCTCCGTCGGAACTG................................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................GGTTAGCGGTATGTGAGAAACGTCG..... 25 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................CCAGCTATGTCCTCGGCTGCAAATCT..................................................................... 26 2 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................CGGCTGCAAAGCTAGTAAGGTAT........................................................... 23 0 20 0.05 1 1 0 0 0 0 0
......................CCTAGTCCTCCGTCGGAACTTCCT............................................................................................................................................................................................................. 24 1 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................AGCGGTATGTGAGAAACGTTGCT... 23 1 20 0.05 1 0 1 0 0 0 0
.............TGGCAGTCTCCTAGTCCTCCGTCGGAA................................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................GGTTAGCGGTATGTGAGAAACGT....... 23 0 20 0.05 1 0 1 0 0 0 0
............................ACTCCGTCGGAACTGCCTAATTCAT...................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
...............GCAGTCTCCTAGTCCTCCGTCG...................................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
......................CCTAGTCCTCCGTCGGAACTGCGT............................................................................................................................................................................................................. 24 1 20 0.05 1 0 1 0 0 0 0
..........CGTTGGCAGTCTCCTAGTCCTCCGTCG...................................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................GGCTGCAAAGCTAGTGAGGTATGT......................................................... 24 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TCTTATATGTTTTGCGGTTAGCGGTA................... 26 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................TTGCGGTTAGCGGTATGTGAGAAA.......... 24 0 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................................TCCTCGGCTGCAAAGCTAGTA................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................................................TATATGTTTTGCGGTTAGCGGTAT.................. 24 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................GTCCTCGGCTGCAAAGCTAGTAAG............................................................... 24 0 20 0.05 1 1 0 0 0 0 0
....................................................TTAAAGCGGAGAAGAATAGTAGTTC.............................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
..............GGCAGTCTCCTAGTCCTCCGTCGGAA................................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................GCGGTATGTGAGAAACGTCGCTT.. 23 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................................................TGCAAAGCTAGTAAGGTATGTCAT...................................................... 24 0 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................................TCGGCTGCAAAGCTAGTCAGGTATG.......................................................... 25 1 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................................................................................TTCTTATATGTTTTGCGGTTAGCGGTAT.................. 28 0 20 0.05 1 0 1 0 0 0 0
.........................................................GCGGAGAAGAATGGTCGT................................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 1 0
................................................................................................................................................................CTATGTCCTCGGTTGCAAAGCTAGTAAG............................................................... 28 1 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................CTGCAAAGCTAGTAAGGTATGTCAT...................................................... 25 0 20 0.05 1 0 0 0 1 0 0
........................TAGTCCTCCGTCGGAACTGCCTAAT.......................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................CTCGGCCGCAAAGGTAGGA................................................................. 19 3 20 0.05 1 0 0 0 1 0 0
...............GCAGTCTCCTAGTCCTCCGTCGGAA................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................................................................ATGTTTTGCGGTTAGCGGTATGT................ 23 0 20 0.05 1 0 1 0 0 0 0
.................AGTCTCCTAGTCCTCCGTCGGAACTG................................................................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0
...........................TCCTCCGTCGGAACTGCCTAATTCAT...................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................CGGCTGCAAAGCTAGTAAGATATGTCAT...................................................... 28 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................TTCTTATATGTTTTGCGGTTAGC....................... 23 0 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................................................................................CTGATATGTTTTGCGGTTAGCGGT.................... 24 1 20 0.05 1 1 0 0 0 0 0
.....................TCCTAGTCCTCCGTCGTAACTGCCT............................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
.............TGGCAGTCTCCTAGTCCTCCGT........................................................................................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0
...............GCAGTCTCCTAGTCCTCCGTCGCAA................................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
.................................................CCATTAAAGCGGAGAAGAATAGTAGTT............................................................................................................................................................................... 27 1 20 0.05 1 0 0 0 1 0 0
........................................................................................................................................................................TCGGCTGCAAAGCTAGTAAGGTACGT......................................................... 26 1 20 0.05 1 0 1 0 0 0 0
...................TCTCCTAGTCCTCCGTCGGATCTGCCT............................................................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0
..................................TCGGAACTGCCTAATTCAT...................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................TTTAAAAATCAGCTATGTCCTCGGCT............................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................GCTAGTAAGTAGTGTCATG..................................................... 19 3 20 0.05 1 0 0 0 0 0 1
.............................................................................................................................................................................................................................GGTTAGCGGTATGTGAGAAACGTCGCT... 27 0 20 0.05 1 1 0 0 0 0 0
...TGATTTACGTTGGCAGTCTCCTAGT............................................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0
...............................................................................................................................................................GCTATGTCCTCGGCTGCAAAGCTAGTAA................................................................ 28 0 20 0.05 1 1 0 0 0 0 0
..........................GTCCTCCGTCGGAACTGCCTAAT.......................................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0
.................AGTCTCCTAGTCCTCCGTCGGAACT................................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................................................................GTTTTGCGGTTAGCGGTATGT................ 21 0 20 0.05 1 1 0 0 0 0 0
....................................................TTAAAGCGGAGAAGAATAGTAGTTCGT............................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
.............TGGCAGTCTCCTAGTCCTCGGTCGGAAC.................................................................................................................................................................................................................. 28 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................CAGCTGCAAAGCTAGTAAGGTTTGT......................................................... 25 2 20 0.05 1 0 1 0 0 0 0
.................................................TCATTAAAGCGGAGAAGAATAGTAT................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................TATGTCCTCGGCTGCAAAGCTAGTAA................................................................ 26 0 20 0.05 1 0 1 0 0 0 0
.............................CCCCGTCGGAACTGCCTAATTCATT..................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
........................CAGTCCTCCGTCGGAACTGCCTAAT.......................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................................CCTCGGTTGCAAAGCTAGTAAGG.............................................................. 23 1 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................................................................GGCTGCAAAGCTAGTAAGGTATGTCAT...................................................... 27 0 20 0.05 1 1 0 0 0 0 0
............................CCTCCATCGGAACTGCCTAATTCAT...................................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
...................TCTCCTAGTCCTCCGTCGGAACTG................................................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
.............TGGCAGGCTCCTAGTCCTCCGTCGGAAC.................................................................................................................................................................................................................. 28 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................CCTCGGCTGCAAAGCTAGTAAGGTATG.......................................................... 27 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................CCTCGGCTGCAAAGCTAGTGAGGTATGT......................................................... 28 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................GCTATGTCCTCGGCTGCAAAGCTAG................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................................................TATATGTTTTGCGGTTAGCGGTATG................. 25 0 20 0.05 1 1 0 0 0 0 0
.......................CTAGTCCTCCGTCGGAACTGCTT............................................................................................................................................................................................................. 23 1 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................................................CTCGGCTGCAAAGCTAGTAAGGTA............................................................ 24 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................ATGTCCTCGGCTGCAAAGCTAGTAAG............................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.......................CTAGTCCTCCGTCGGAACTGCCTAAT.......................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
............................CCTCCATCGGAACTGCCTAATTCATT..................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................GTCCTCGGCTGCAAAGCTAGTAAGGTA............................................................ 27 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................TGTCCTCGGCTGCAAAGCTAGTAAA............................................................... 25 1 20 0.05 1 1 0 0 0 0 0
.............................CTCCGTCGGAACTGCCTAATTCAT...................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
..................GTCTCCTAGTCCTCCGTCGGAACT................................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................CTCGGCTGCAAAGCTAGTAAGTT............................................................. 23 1 20 0.05 1 0 1 0 0 0 0
...................CCTCCTAGTCCTCCGTCGGAACTGCCT............................................................................................................................................................................................................. 27 1 20 0.05 1 0 1 0 0 0 0
..........................................GCCTAATTCATTAAAGCGGAGAAGAAT...................................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0
........................................CTGCCTAATTCATTAAAGCGGAGAAGA........................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
..........................................................CGGAGAAGAATAGTAGTTCGTAAAGTTT..................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
...................................................ATTAAAGCGGAGAAGAATAGTAGT................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
..................................................CATTAAAGCGGAGAAGAATAGTAG................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................AGCTATGTCCTCGGCTGCAAAGCTAGTAA................................................................ 29 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................CTATGTCCTCGGCTGCAAAGCTA.................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................GCTGCAAAGCTAGTAAGGTATGTCA....................................................... 25 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................................CTAGTAAGGTACGTCATGATAAGTGGT............................................ 27 2 20 0.05 1 0 1 0 0 0 0
..............GGCAGTCTCCTAGTCCTCCGTCGGAACT................................................................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................................................ATATGTTTTGCGGTTAGCGGTATTT................ 25 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................AGCTATGTCCTCGGCTGCAAAGCTAGTA................................................................. 28 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................CGGCTGCAAAGCTAGTAAGGTACGT......................................................... 25 1 20 0.05 1 0 1 0 0 0 0
....................................................TTAAAGCGGAGAAGAATAGTAGGT............................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
....................CTCCTAGTCCTCCGTCGGAACTGCC.............................................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................................TTACGGCTGCAAAGCTAGTAAGGTATGT......................................................... 28 3 20 0.05 1 1 0 0 0 0 0
........................TAGTCCTCCGTCGGAACTGCCTAATT......................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................CTCGGCTGCAAAGCTAGTAAGGCATGC......................................................... 27 2 20 0.05 1 0 1 0 0 0 0
........................TAGTCCTCCATCGGAACTGCCTAATTCAT...................................................................................................................................................................................................... 29 1 20 0.05 1 1 0 0 0 0 0
........................TGGTCCTTCGTCGGAACTGCCTAATT......................................................................................................................................................................................................... 26 2 20 0.05 1 0 0 0 1 0 0
..............................................................................................................................................................................................................TCTTATATGTTTTGCGGTTAGCGGTAT.................. 27 0 20 0.05 1 0 1 0 0 0 0
...............................................ATTCATTAAAGCGGAGAAGAATAGTAGT................................................................................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................TATGTCCTCGGCTGCAAAGCTAG................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................CTATGTCCTCGGCTGCAAAGCTAGTAA................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
...........................................................GGAGAAGAATAGTAGTTCGT............................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0
..TTAATTTACGTTGGCAGTCTCCTAGTC.............................................................................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0
................................................TTCATTAAAGCGGATAAGAATAGTAG................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13339:2927904-2928154 - dan_2814 AAAA-CTAA---ATGCAACCGTCAGAGGATCAGGAGGCAGCCTTGAC---GGATTAAGTAATTTCGCCTCTTCTTATCATCAAGCATTTCAAATTAATGTTCACAGAATTTCTTACTGCAACCGATTTTTTGTACCAGACGCCCAATCT-GGGAGAAAATTTTTAGTCGATACAGGAGCCGACGTTTCGATCATTCCATACAGTACTATTCACAAG-AATATACAAAACGCC-------AATCGCCATACACTCTTTGCAGCGAACG
droBip1 scf7180000395478:33701-33926 + CC------------------GACAGAAATTCACGAGGCGATTAGAAC---GGAA--------CACGTTTATTCACCTCTCCGTATAATCAAAATCAACGTACACAAAATTTCA---TGCAACCTACTTTTCGTACCAGACGCCCAATCT-GGTACACAATTTTCAGTCGATACTGGAGCCGACGTATCGATTATTCCATCCAGCGAAATGCACAGC-AATAAGCAAAACGCC-------AACTGGCATACACTCTTTGCAGTGAACG
droKik1 scf7180000299059:5627-5876 + AAA--CTAA---GCACCACCGTTGGAAATCCACAGGGCAGTTCCGAC---GGTCGTAACGCAAATGCCCCACAACGCCTACCATTGCTCAAAGTAAACATCTGCAGAATTTCGTCCTCTAACCGTCTCTTCGTTCCAGACTCCACATCG-GGAAAAAGTTTTCTCATCGACACTGGAGCTGACGTATCCGTTATACCACCAAACACAATCAATCGG-CACATCGCAGCTGCT-------AACAGCCATACACTATTCGCAGCCAATG
droFic1 scf7180000453919:1703-1893 + AAAA-CTAA---A-GCAGTC-TTCGGAT-TCGGCGGACAAATTCGAAGAAGACCACAACACAATTGCCCG------------------------------------------------------CCTCGCCATCAACGACAATTTCCCC-AAAACTCAATTTCTGATCGACACCGGCGCCGACATTTCAGTGATGCCACCCTGCAAAA-------A-CGTAAA--A---ACT-ATGCTCACTCCAAAGCTTCTTTTCGCCGCCAATG
droEle1 scf7180000490971:473514-473700 - CCTA-ACAGTAAAC--ATTC-CTC-ACT-C----------------------------------------------------------AAAAAAAAATATCTGCAGAATTTTATCCCCTAATCGTCTTGTAGTTAAAGA-------TCA-AGCAATAGTTTTCGTATAGATACTGGAACTGACGTATCGGTTATACCACAATTTACAATAAATCGA-CACATTGTAGCAATT-------ATCGTTCATACAATATTTGCAGCCAATG
droRho1 scf7180000765341:13432-13682 - AAAA-CTAA---GCACCACCGTTGGAAATCAACAGGGCAGCTCCGAC---GGTCGTGACGCAAATGCTCCACCACTCTACCCATTGCTCAAAGTAAACATCTGCAGAATTTCGTCCTCCAATCGTCTCTTCGTTCCAGACTCCAAATCG-GGTAAAAATTTTCTTATCGACACTGGAGCTGACGTATCTGTTATACCACCCAGCACAATTAATCAA-CACATCGCAGTCACT-------AATGAACCTACACTATTTGCAGCCAATT
droBia1 scf7180000302386:11197-11447 - AAAA-CTAA---GCTCCACCGTTGGAAATTAACAGGGCAGGTCCGAC---GGTCGTAACCCAAATGCCTTACAACGCTACTCATTGCTTAAAGTAAAAATCTGCAAAATTTCATCCTCCAAACGTCTCTTCGTTCCGGATTCCAAATCC-GGTAAAAGTTTTCCCAACCACACTGGAACAGACGTATCTGTTATACCACCAAAAACCATTAATCGA-CACATTATAGCTATT-------ACTAACCATTCTCTATTCGTAGCCAATG
droTak1 scf7180000413412:5245-5495 - AAAA-CTAA---GCACCACCGTTGGAAATCAACAGGGCAGCTCCGAC---GGTTGTATTGCAAATGCCTCACTACCGTACCCCGTTCTCAAAGTAAACATCTGTAGAATTTCATCTTCCAATCGTCTCTTCGTTCCAGACTCCAAATCT-GGTAAATGTTTTCTCATCGACACTGGAGCTGACGTATCTGTTTTACCACCAAATACATTTAATCGA-CACATTCCAGCTATT-------AATAACCATTCACTATTCGCAGCCAATG
dm3 chr2RHet:892366-892382 + A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTACGCGGCCAACA
droSec2 scaffold_0:590573-590676 + AAA-----------------------------------------------------------------------------------------------------------------------------------------------------------ATTCCTTATCGACTCCGGATCAGTCATCTCACTTATACCTGTTTCGATAATCAAAGGATTGCATCGTCGC-AAA-------GACGACTTCAAACTCTACGCGGCCAACA
droYak3 v2_chrUn_002:59236-59428 - AAAAACTAA---G-GCAGTC-TTCGTAT-CCGGGAGGCAAGTTCGAAGAGGGCCACTGCACAATTGCCCG------------------------------------------------------CCTCAGCATCAGCGACAGCTTTTCCAAACAAAAAATTCCTTATCGACACCGGCGCCGACATTTCAGTGTTGCCACCCTGTAAAA-------A-TGCAAA------ACTAATACCCACTCCAGGGCTTCTTTTCGCAGCCAATG
droEre2 scaffold_4781:7450-7553 - AAA-----------------------------------------------------------------------------------------------------------------------------------------------------------ATTCCTTATCGATTCCGGATCAGTCATCTCACTCATACCTGTTTCGATAATCAAGGGTATACATCGTCGC-AAA-------GACGACTTCAAACTCTACGCGGCCAACA
dp5 Unknown_group_839:3009-3151 + TCA----------------------------------------------------------------------------------------------------------------CGATAACCGACTGCACATCCAAGATAAAAAAACT-AGTCGGATTTTTCTCATCGATTCCGGATCGGTGGGGTCAGTTATACCTT---GCACTCTGTCTCAA-CGCAAACTAAGCGAT-------GACAAACTGAAATTTTATGCCGCAAACC
droPer2 scaffold_51:221567-221709 + TCA----------------------------------------------------------------------------------------------------------------CGACCACCGACTGCACATCCAAGATAAAAAAACT-AGTCGGATTTTTCTCATCGATTCCGGATCGGTGGGGTCAGTTATACCTT---GCACTCTGTCTCAA-CGCAAACTAAGCGAT-------GACAAACTGAAATTTTATGCCGCAAACC
droWil2 scf2_1100000004852:361483-361579 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTCATTGACTCAGGGTCTGACATTTCTGTTGTTCCACGATCATTCTTCAAGC----AAAAAACCAAACCT-------TGCAACCTCATTTTATATGCTGCCAATC
droVir3 scaffold_12728:238071-238321 - AAAA-CTAGCAAACACCGTCGAAGAAAATTAAATTGGCAACTTCGAC---GAACAATCTGTTCATGCCATAAAAAATTGTTTCAAGCTTAGTATAAACGTTCACAGTATAATAACCTCTAATCGACTTTTTATTCCAGATACAAAGTCT-GGTAAAAATTTCC-TTACGACACTGGCGCAGTTTTGTCAGTCATACCTTC-TGCACCATAAACCGA-CGTTTTTAAGCCAGC-------GGCTAAAATCC-CCTTTTTCTGCTAACG
droMoj3 scaffold_3922:2302-2552 + AAAA-CTAA---TCACACCCATCGAGGTTTCAAAAGGCAGCGTCGAT---GGGCAACCCCAACACGCCTTTCAAAATAGCCCAAAACTTAAGGTTGAAGTACATAGCATTTCCACTTCTAATCGTTTGTTTATTCCAGATGCTAAGTCT-GGTCGAAAATTCCTCATCGACACAGGAGCAGACATCTCTGTAATACCCACCTCAACAATAAACCGA-CGATTAAATATCTGC-------AATGAAAATCCACTATTTGCAGCCAACG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AAAA-CTAA---ATGCAACCGTCAGAGGATCAGGAGGCAGCCTTGAC---GGATTAAGTAATTTCGCCTCTTCTTATCATCAAGCATTTCAAATTAATGTTCACAGAATTTCTTACTGCAACCGATTTTTTGTACCAGACGCCCAATCT-GGGAGAAAATTTTTAGTCGATACAGGAGCCGACGTTTCGATCATTCCATACAGTACTATTCACAAG-AATATACAAAACGCC-------AATCGCCATACACTCTTTGCAGCGAACGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............TGCAACCGTCAGAGGATCAGGAGG......................................................................................................................................................................................................................................24200.153030000
.............................................................................................................................................................................................................................TACAAAACGCC-------AATCGCCATACACTCT............27200.153300000
.............................................................................................................................................................................................................................TACAAAACGCC-------AATCGCCATACACTCTT...........28200.153120000
....................................................................................................................................................................................................................................CGCC-------AATCGCCATACACTCTTTGCAGC.....27200.153210000
............................................................................TCATCAAGCATTTCAAATTAATGTT......................................................................................................................................................................2580.131010000
...................................................................................................................................................................................................CCATACAGTACTATTCACAAG-AATA..............................................25160.132200000
.................................................................................................................................TTGTACCAGACGCCCAATCT-G....................................................................................................................2190.111100000
......TAA---ATGCAACCGTCAGAGGATCAGG.........................................................................................................................................................................................................................................25200.102020000
........................GAGGATCAGGAGGCAGCCTTGAC---G........................................................................................................................................................................................................................24200.102020000
......TAA---ATGCAACCGTCAGAGGATCAGGA........................................................................................................................................................................................................................................26200.102020000
...A-CTAA---ATGCAACCGTCAGAGGATC............................................................................................................................................................................................................................................24200.102020000
..AA-CTAA---ATGCAACCGTCAGAGGATCAG..........................................................................................................................................................................................................................................27200.102200000
.....................................CAGCCTTGAC---GGATTAAGTAATTTCGC........................................................................................................................................................................................................27160.061010000
.......................................................................................................................................................................................GTTTCGATCATTCCATACAGTACTA...........................................................25160.061010000
.......................................GCCTTGAC---GGATTAAGTAATTTCGCC.......................................................................................................................................................................................................26160.061010000
............................................................................................................................................................................................GATCATTCCATACAGTACTATTC........................................................23160.061100000
............................................................................................................................................................................................GATCATTCCATACAGTACTATTCAC......................................................25160.061100000
............................................................................................................................................................................................GATCATTCCATACAGTACTATTCACA.....................................................26160.061010000
.......................................GCCTTGAC---GGATTAAGTAATTTCGC........................................................................................................................................................................................................25160.061010000
................................................................................................................................................................................................ATTCCATACAGTACTATTCACAA....................................................23160.061010000
.......................................................................................................................................................................................GTTTCGATCATTCCATACAGTACTAT..........................................................26160.061100000
....................................GCAGCCTTGAC---GGATTAAGTAATTTCG.........................................................................................................................................................................................................27160.061100000
........................................CCTTGAC---GGATTAAGTAATTTCGCC.......................................................................................................................................................................................................25170.061010000
.................................GAGGCAGCCTTGAC---GGATTAAGTAAT.............................................................................................................................................................................................................26180.061001000
.....................................................TTAAGTAATTTCGCCTCTTCTTATCATC..........................................................................................................................................................................................28190.051010000
.................................................................................................................................................................................................................................................TCGCCATACACTCTTTGCAGCGAACG26200.051100000
AAAA-CTAA---ATGCAACCGTCAGAGGAT.............................................................................................................................................................................................................................................26200.051010000
...................CGTCAGAGGATCAGGAGGCAGCC.................................................................................................................................................................................................................................23200.051010000
.......................................................................................................................................................................CGATACAGGAGCCGACGTTTCG..............................................................................22200.051100000
...........................................................................................................................................................................................................................TATACAAAACGCC-------AATCGCCATACACTCT............29200.051100000
....................GTCAGAGGATCAGGAGGCAGCC.................................................................................................................................................................................................................................22200.051010000
.........................................................................................................................................................................................................................AATATACAAAACGCC-------AATCGCCATACACT..............29200.051100000
.....................TCAGAGGATCAGGAGGCAGCCTTG..............................................................................................................................................................................................................................24200.051100000
.............................................................................................................................................................................................................CTATTCACAAG-AATATACAAAACGCC-------............................26200.051010000
.......................................................................................................................................................................................................................................C-------AATCGCCATACACTCTTTGCAG......23200.051100000
.................................................................................................................................................................................GCCGACGTTTCGATCATTCCATACA.................................................................25200.051100000
....................................................................................................................................................................AGTCGATACAGGAGCCGACGTTTCGATC...........................................................................28200.051100000
...........................................................................................................................................................................................................................TATACAAAACGCC-------AATCGCCATACACT..............27200.051100000
.............................................................................................................................................................................................................................TACAAAACGCC-------AATCGCCATACACTC.............26200.051100000
..................................................................................................................................................................................................................................AACGCC-------AATCGCCATACACTCTTTGC........26200.051010000
.......................................................................................................................................................................................................................G-AATATACAAAACGCC-------AATCGCCATA..................26200.051100000
..........................................................................................................................................................................TACAGGAGCCGACGTTTCGATCATTCC......................................................................27200.051010000
..................................................................CCTCTTCTTATCATCAAGCATTTC.................................................................................................................................................................................24200.051010000
.....................................................................................................................................................................................................................AAG-AATATACAAAACGCC-------AATCGCCA....................26200.051010000
....................................................................................................................................................................................................................CAAG-AATATACAAAACGCC-------AATCGCC.....................26200.051010000
.....CTAA---ATGCAACCGTCAGAGGATCA...........................................................................................................................................................................................................................................24200.051100000
...........................................................................................................................................................................................................................TATACAAAACGCC-------AATCGCCATACACC..............27200.051010000
...A-CTAA---ATGCAACCGTCAGAGGATCAGG.........................................................................................................................................................................................................................................27200.051000010
.........................AGGATCAGGAGGCAGCCTTGAC---.........................................................................................................................................................................................................................22200.051010000
...............................................................................................................................................................................................................................CAAAACGCC-------AATCGCCATACACTCTTTG.........28200.051100000
droBip1
CC------------------GACAGAAATTCACGAGGCGATTAGAAC---GGAA--------CACGTTTATTCACCTCTCCGTATAATCAAAATCAACGTACACAAAATTTCA---TGCAACCTACTTTTCGTACCAGACGCCCAATCT-GGTACACAATTTTCAGTCGATACTGGAGCCGACGTATCGATTATTCCATCCAGCGAAATGCACAGC-AATAAGCAAAACGCC-------AACTGGCATACACTCTTTGCAGTGAACGSizeHit CountTotal NormTotal
No Reads
droKik1
AAA--CTAA---GCACCACCGTTGGAAATCCACAGGGCAGTTCCGAC---GGTCGTAACGCAAATGCCCCACAACGCCTACCATTGCTCAAAGTAAACATCTGCAGAATTTCGTCCTCTAACCGTCTCTTCGTTCCAGACTCCACATCG-GGAAAAAGTTTTCTCATCGACACTGGAGCTGACGTATCCGTTATACCACCAAACACAATCAATCGG-CACATCGCAGCTGCT-------AACAGCCATACACTATTCGCAGCCAATGSizeHit CountTotal NormTotal
No Reads
droFic1
AAAA-CTAA---A-GCAGTC-TTCGGAT-TCGGCGGACAAATTCGAAGAAGACCACAACACAATTGCCCG------------------------------------------------------CCTCGCCATCAACGACAATTTCCCC-AAAACTCAATTTCTGATCGACACCGGCGCCGACATTTCAGTGATGCCACCCTGCAAAA-------A-CGTAAA--A---ACT-ATGCTCACTCCAAAGCTTCTTTTCGCCGCCAATGSizeHit CountTotal NormTotal
No Reads
droEle1
CCTA-ACAGTAAAC--ATTC-CTC-ACT-C----------------------------------------------------------AAAAAAAAATATCTGCAGAATTTTATCCCCTAATCGTCTTGTAGTTAAAGA-------TCA-AGCAATAGTTTTCGTATAGATACTGGAACTGACGTATCGGTTATACCACAATTTACAATAAATCGA-CACATTGTAGCAATT-------ATCGTTCATACAATATTTGCAGCCAATGSizeHit CountTotal NormTotal
No Reads
droRho1
AAAA-CTAA---GCACCACCGTTGGAAATCAACAGGGCAGCTCCGAC---GGTCGTGACGCAAATGCTCCACCACTCTACCCATTGCTCAAAGTAAACATCTGCAGAATTTCGTCCTCCAATCGTCTCTTCGTTCCAGACTCCAAATCG-GGTAAAAATTTTCTTATCGACACTGGAGCTGACGTATCTGTTATACCACCCAGCACAATTAATCAA-CACATCGCAGTCACT-------AATGAACCTACACTATTTGCAGCCAATTSizeHit CountTotal NormTotal
No Reads
droBia1
AAAA-CTAA---GCTCCACCGTTGGAAATTAACAGGGCAGGTCCGAC---GGTCGTAACCCAAATGCCTTACAACGCTACTCATTGCTTAAAGTAAAAATCTGCAAAATTTCATCCTCCAAACGTCTCTTCGTTCCGGATTCCAAATCC-GGTAAAAGTTTTCCCAACCACACTGGAACAGACGTATCTGTTATACCACCAAAAACCATTAATCGA-CACATTATAGCTATT-------ACTAACCATTCTCTATTCGTAGCCAATGSizeHit CountTotal NormTotal
No Reads
droTak1
AAAA-CTAA---GCACCACCGTTGGAAATCAACAGGGCAGCTCCGAC---GGTTGTATTGCAAATGCCTCACTACCGTACCCCGTTCTCAAAGTAAACATCTGTAGAATTTCATCTTCCAATCGTCTCTTCGTTCCAGACTCCAAATCT-GGTAAATGTTTTCTCATCGACACTGGAGCTGACGTATCTGTTTTACCACCAAATACATTTAATCGA-CACATTCCAGCTATT-------AATAACCATTCACTATTCGCAGCCAATGSizeHit CountTotal NormTotal
No Reads
dm3
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTACGCGGCCAACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSec2
AAA-----------------------------------------------------------------------------------------------------------------------------------------------------------ATTCCTTATCGACTCCGGATCAGTCATCTCACTTATACCTGTTTCGATAATCAAAGGATTGCATCGTCGC-AAA-------GACGACTTCAAACTCTACGCGGCCAACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................TATACCTGTTTCGATAATCAAAGG....................................................2421.0022000
...................................................................................................................................................................TTATCGACTCCGGATCAGTCATCTCAC.............................................................................2790.7877000
...............................................................................................................................................................TTCCTTATCGACTCCGGATCAGTCATC.................................................................................2790.6766000
...................................................................................................................................................................TTATCGACTCCGGATCAGTCATCTC...............................................................................2590.6766000
...................................................................................................................................................................TTATCGACTCCGGATCAGTCATCTCA..............................................................................2690.6766000
.................................................................................................................................................................CCTTATCGACTCCGGATCAGTCATC.................................................................................2590.5655000
........................................................................................................................................................................................................................TTGCATCGTCGC-AAA-------GACGACTTCAAAC...............2880.5044000
................................................................................................................................................................................................ATACCTGTTTCGATAATCAAAGGA...................................................2420.5011000
................................................................................................................................................................TCCTTATCGACTCCGGATCAGTCATCT................................................................................2790.4444000
................................................................................................................................................................TCCTTATCGACTCCGGATCAGTCATC.................................................................................2690.4443010
.............................................................................................................................................................................................................................TCGTCGC-AAA-------GACGACTTCAAACTC.............2580.3833000
......................................................................................................................................................................................................................................................TCAAACTCTACGCGGCCAAC.2070.2922000
.........................................................................................................................................................................................................................TGCATCGTCGC-AAA-------GACGACTTCAAACTC.............2980.2522000
...................................................................................................................................................................TTATCGACTCCGGATCAGTC....................................................................................2090.2222000
...................................................................................................................................................................TTATCGACTCCGGATCAGTCATCTCACT............................................................................2890.2222000
.................................................................................................................................................................CCTTATCGACTCCGGATCAGTCATCTCAC.............................................................................2990.2222000
....................................................................................................................................................................TATCGACTCCGGATCAGTCATCTCA..............................................................................2590.2221010
...........................................................................................................................................................................TCCGGATCAGTCATCTCACTTATACC......................................................................2690.2222000
..................................................................................................................................................................CTTATCGACTCCGGATCAGTCATCT................................................................................2590.2222000
.................................................................................................................................................................CCTTATCGACTCCGGATCAGTCATCTC...............................................................................2790.2222000
...............................................................................................................................................................TTCCTTATCGACTCCGGATCAGTCA...................................................................................2590.2222000
............................................................................................................................................................................................................................ATCGTCGC-AAA-------GACGACTTCAAACT..............2580.1311000
.........................................................................................................................................................................................................................TGCATCGTCGC-AAA-------GACGACTTCAAAC...............2780.1310010
.........................................................................................................................................................................................................................TGCATCGTCGC-AAA-------GACGACTTCAAACT..............2880.1311000
......................................................................................................................................................................TCGACTCCGGATCAGTCATCTCACT............................................................................2590.1111000
................................................................................................................................................................TCCTTATCGACTCCGGATCAGTCAT..................................................................................2590.1111000
...................................................................................................................................................................TTATCGACTCCGGATCAGTCATCT................................................................................2490.1110010
....................................................................................................................................................................TATCGACTCCGGATCAGTCATCTC...............................................................................2490.1111000
..A-----------------------------------------------------------------------------------------------------------------------------------------------------------ATTCCTTATCGACTCCGGATCAGTC....................................................................................2690.1111000
................................................................................................................................................................TCCTTATCGACTCCGGATCAGTCATCTCA..............................................................................2990.1111000
.........................................................................................................................................................................................................................TGCATCGTCGC-AAA-------GACGACT.....................2190.1111000
...................................................................................................................................................................TTATCGACTCCGGATCAGTCATC.................................................................................2390.1110010
.................................................................................................................................................................CCTTATCGACTCCGGATCAGTCATCTAT..............................................................................2890.1111000
......................................................................................................................................................................TCGACTCCGGATCAGTCATCT................................................................................2190.1110010
....................................................................................................................................................................TATCGACTCCGGATCAGTCATCT................................................................................2390.1111000
.................................................................................................................................................................CCTTATCGACTCCGGATCAGTCATCTCA..............................................................................2890.1111000
................................................................................................................................................................TCCTTATCGACTCCGGATCAGTCATCTCT..............................................................................2990.1111000
.....................................................................................................................................................................ATCGACTCCGGATCAGTCATCTCACA............................................................................2690.1111000
....................................................................................................................................................................TATCGACTCCGGATCAGTCATCTCACT............................................................................2790.1111000
..................................................................................................................................................................CTTATCGACTCCGGATCAGTCATCTCA..............................................................................2790.1111000
...................................................................................................................................................................TTATCGACTCCGGATCAGTCATCTCACTT...........................................................................2990.1111000
.....................................................................................................................................................................ATCGACTCCGGATCAGTCATCTCA..............................................................................2490.1111000
.....................................................................................................................................................................ATCGACTCCGGATCAGTCATCTCACT............................................................................2690.1110010
....................................................................................................................................................................TATCGACTCCGGATCAGTCATCTCAC.............................................................................2690.1111000
................................................................................................................................................................TCCTTATCGACTCCGGATCAGTCATCTC...............................................................................2890.1111000
...............................................................................................................................................................TTCCTTATCGACTCCGGAC.........................................................................................1990.1111000
droYak3
AAAAACTAA---G-GCAGTC-TTCGTAT-CCGGGAGGCAAGTTCGAAGAGGGCCACTGCACAATTGCCCG------------------------------------------------------CCTCAGCATCAGCGACAGCTTTTCCAAACAAAAAATTCCTTATCGACACCGGCGCCGACATTTCAGTGTTGCCACCCTGTAAAA-------A-TGCAAA------ACTAATACCCACTCCAGGGCTTCTTTTCGCAGCCAATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAA-----------------------------------------------------------------------------------------------------------------------------------------------------------ATTCCTTATCGATTCCGGATCAGTCATCTCACTCATACCTGTTTCGATAATCAAGGGTATACATCGTCGC-AAA-------GACGACTTCAAACTCTACGCGGCCAACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................AA-------GACGACTTCAAACTCTACGCGGC.....25111.271400000014
..................................................................................................................................................................................................................................GC-AAA-------GACGACTTCAAACTCTACGCGG......27111.001100000011
.....................................................................................................................................................................................................................................AAA-------GACGACTTCAAACTCTACGCGGC.....26110.7380000008
dp5
TCA----------------------------------------------------------------------------------------------------------------CGATAACCGACTGCACATCCAAGATAAAAAAACT-AGTCGGATTTTTCTCATCGATTCCGGATCGGTGGGGTCAGTTATACCTT---GCACTCTGTCTCAA-CGCAAACTAAGCGAT-------GACAAACTGAAATTTTATGCCGCAAACCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TCA----------------------------------------------------------------------------------------------------------------CGACCACCGACTGCACATCCAAGATAAAAAAACT-AGTCGGATTTTTCTCATCGATTCCGGATCGGTGGGGTCAGTTATACCTT---GCACTCTGTCTCAA-CGCAAACTAAGCGAT-------GACAAACTGAAATTTTATGCCGCAAACCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................ATCGATTCCGGATCGGTG....................................................................................1860.171010000
....................................................................................................................................................................................................................................CGAT-------GACAAACTGAAATT..............1880.131010000
droWil2
---------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTCATTGACTCAGGGTCTGACATTTCTGTTGTTCCACGATCATTCTTCAAGC----AAAAAACCAAACCT-------TGCAACCTCATTTTATATGCTGCCAATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AAAA-CTAGCAAACACCGTCGAAGAAAATTAAATTGGCAACTTCGAC---GAACAATCTGTTCATGCCATAAAAAATTGTTTCAAGCTTAGTATAAACGTTCACAGTATAATAACCTCTAATCGACTTTTTATTCCAGATACAAAGTCT-GGTAAAAATTTCC-TTACGACACTGGCGCAGTTTTGTCAGTCATACCTTC-TGCACCATAAACCGA-CGTTTTTAAGCCAGC-------GGCTAAAATCC-CCTTTTTCTGCTAACGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................TTCACAGTATAATAACCTCTAATCGAC.............................................................................................................................................2720.501000000000000000000000000000000000000100000000000000000000000000
droMoj3
AAAA-CTAA---TCACACCCATCGAGGTTTCAAAAGGCAGCGTCGAT---GGGCAACCCCAACACGCCTTTCAAAATAGCCCAAAACTTAAGGTTGAAGTACATAGCATTTCCACTTCTAATCGTTTGTTTATTCCAGATGCTAAGTCT-GGTCGAAAATTCCTCATCGACACAGGAGCAGACATCTCTGTAATACCCACCTCAACAATAAACCGA-CGATTAAATATCTGC-------AATGAAAATCCACTATTTGCAGCCAACGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................GTACATAGCATTTCCACTTCTAATCGTT.............................................................................................................................................2880.383300000
............................................................................................................................................................AAATTCCTCATCGACACAGGAGC........................................................................................2380.383300000
.......................GAGGTTTCAAAAGGCAGCGTCGA.............................................................................................................................................................................................................................2380.252100001
...........................................................................................................................................................AAAATTCCTCATCGACACAGGAGC........................................................................................2480.131100000
.........................GGTTTCAAAAGGCAGCGTCGG.............................................................................................................................................................................................................................2180.131000010
..................................................................................................GTACATAGCATTTCCACTTCTAATCGTC.............................................................................................................................................2880.131100000
..................................................................................................................................................................CTCATCGACACAGGAGCAGACA...................................................................................2280.131100000
..................................................................................................................................................TCT-GGTCGAAAATTCCTCATC...................................................................................................2180.131000010
.............................................................................................TTGAAGTACATAGCATTTCCACTTC.....................................................................................................................................................2580.131100000
.......................................................................................TTAAGGTTGAAGTACATAGCA...............................................................................................................................................................2180.131000010
..................................................................................................GTACATAGCATTTCCACTTCTAAT.................................................................................................................................................2490.111100000
..................................................................................................GTACATAGCATTTCCACTTCTAATC................................................................................................................................................2590.111000010
..................................................................................................GTACATAGCATTTCCACTTCTA...................................................................................................................................................2290.111000010

Generated: 05/18/2015 at 05:37 AM