ID:

dan_2803

 Coordinate:

scaffold_13339:898116-898266 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-41.5 -41.3 -41.0

Flybase annnotation

exon [dana_GLEANR_14473:1]; CDS [Dana\GF13964-cds]; intron [Dana\GF13964-in]

No Repeatable elements found

mature
  1. scaffold_13165:68088-68110 +
  2. scaffold_13335:2879039-2879061 -
  3. scaffold_13339:882348-882370 +
  4. dan_2803  scaffold_13339:898242-898264 +
  5. scaffold_13417:4172090-4172112 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGTGCCGCAGGAGATTTGGCCGGGGACGGCGGAAGAAGACCAGCAGATGGTGCGTCGTCTGGCAGGTGTGGGTGTGGGGGGAATGTTTTCGGGTGCGCGGGGGCTCCAGCGGGGTACGCTTCACTCGGAGATATTCACAAACAGTCAATATTAATATATAAACAATATTAACAAACAGTCGGTAGAAATCTTGGATGATTATTGGATCACCCTAGTGTTTCTAGATGCCGACTCAGCACACCCGCCTTTG
**************************************************....(((((((...((((.(((.(((.....(((((((((((((((.(((...(((((...))))).)))..)))))))))))))))....))).)))...(((((((.......))))))).......((....)).)))).))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V055
head
 M058
embryo
 V106
head
 V039
embryo
...............................................................CTGGTGTGGGTGTGGTGGGAA....................................................................................................................................................................... 21 2 3 0.33 1 0 0 0 1 0
............................................................TGGCACGTTTGGCTGTGGGGGG......................................................................................................................................................................... 22 3 3 0.33 1 0 1 0 0 0
.....................................................................................................................................................................................GGTAGAAATCTTGGATGATTATTG.............................................. 24 0 4 0.25 1 1 0 0 0 0
........................................................................................................................................................................................................................TGTTTCTAGATGCCGACTCAGCAC........... 24 0 12 0.25 3 3 0 0 0 0
................................................................................................................................................................................CAGTCGGTAGAAATCTTGGATGA.................................................... 23 0 5 0.20 1 1 0 0 0 0
....................................................................ATGGGTATGCGGGGAATGTTT.................................................................................................................................................................. 21 3 6 0.17 1 1 0 0 0 0
...........................................................................AGGGGGGAAGGTTTTCGTGTGC.......................................................................................................................................................... 22 3 7 0.14 1 0 1 0 0 0
............................................................................GGGGAGAAGGTTTTCGGGTG........................................................................................................................................................... 20 2 8 0.13 1 0 0 0 0 1
..................................................................................................................................................................................................................................TGCCGACTCAGCACACCCGCCT... 22 0 9 0.11 1 0 0 1 0 0
..................................................................................................................................................................................................................................TGCCGACTCAGCACACCCGCCTT.. 23 0 9 0.11 1 0 0 1 0 0
............................................................................................................................................................................................................................TCTAGATGCCGACTCAGCACACCCGCC.... 27 0 10 0.10 1 1 0 0 0 0
..................................................................................................................................................................................GTCGGTAGAAATCTTGGATGATTA................................................. 24 0 10 0.10 1 1 0 0 0 0
......................................................................................................................................................................................................................AGTGTTTCAAGATGCCGACTCAGCA............ 25 1 10 0.10 1 1 0 0 0 0
........................................................................................TTGGGGTGCGCGCGGGCCC................................................................................................................................................ 19 3 10 0.10 1 0 0 0 0 1
.........................................................................................................................................................................TAACAAACAGTCGGTAGAAATCTTGG........................................................ 26 0 20 0.10 2 1 0 0 0 1
..............................................................................................................................................................................................................................TAGATGCCGACTCAGCACACCCGC..... 24 0 11 0.09 1 0 0 1 0 0
............................................................................................................................................................................................................................TCTAGATGCCGACTCAGCACACCCGC..... 26 0 11 0.09 1 1 0 0 0 0
...........................................................................................................................................................................................................................TTCTAGATGCCGACTCAGCACACCCG...... 26 0 11 0.09 1 1 0 0 0 0
.........AGGAGATATGGCCAGGGA................................................................................................................................................................................................................................ 18 2 12 0.08 1 0 0 1 0 0
........................................................................................................................................................................................................................TGTTTCTAGATGCCGACTCAGC............. 22 0 12 0.08 1 1 0 0 0 0
........................................................................................................................................................................................................................TGTTTCTAGATGCCGACTCAGCACAC......... 26 0 12 0.08 1 1 0 0 0 0
........................................................................................................................................................................................................................TGTTTCTAGATGCCGACTCAGCA............ 23 0 12 0.08 1 1 0 0 0 0
........................................................................................................................................................................................................................TGTTTCTAGATGCCGACTCAGCACACC........ 27 0 12 0.08 1 1 0 0 0 0
.........................................................................................................................................................................................................................GTTTCTAGATGCCGACTCAGC............. 21 0 12 0.08 1 1 0 0 0 0
................................................................................................................................................................................................................................GATGCCGACTCAGCACACCC....... 20 0 12 0.08 1 1 0 0 0 0
........................................................................................................................................................................................................................CGTTTCTAGATGCCGACTCAGCACA.......... 25 1 13 0.08 1 1 0 0 0 0
....................................................................................................................................................................................CGGTAGAAATCTTGGATGAT................................................... 20 0 13 0.08 1 1 0 0 0 0
............................................................................................................................................................................................................................TCTAGATGCCGACTCAGCACACCCAC..... 26 1 13 0.08 1 0 0 1 0 0
.............................................................................................................................................................................AAACAGTCGGTAGAAATCTTG......................................................... 21 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................................................AGATTGCGACTCACCACACC........ 20 3 20 0.05 1 0 0 1 0 0
...............TTGGGCCGGGGACAGCG........................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0
............................................................................GCGGGGAAGGTTTTCGCGT............................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................................ACAAACAGTCGGTAGAAATCC........................................................... 21 1 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

ACCACGGCGTCCTCTAAACCGGCCCCTGCCGCCTTCTTCTGGTCGTCTACCACGCAGCAGACCGTCCACACCCACACCCCCCTTACAAAAGCCCACGCGCCCCCGAGGTCGCCCCATGCGAAGTGAGCCTCTATAAGTGTTTGTCAGTTATAATTATATATTTGTTATAATTGTTTGTCAGCCATCTTTAGAACCTACTAATAACCTAGTGGGATCACAAAGATCTACGGCTGAGTCGTGTGGGCGGAAAC
**************************************************....(((((((...((((.(((.(((.....(((((((((((((((.(((...(((((...))))).)))..)))))))))))))))....))).)))...(((((((.......))))))).......((....)).)))).))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
 V105
male body		 V106
head
...........CTCTAAACCGGCCCCTGCCGCCTTCT...................................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
................................................................................................GCGCCCCCGAGGTCGCCCCATGCGAA................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0
..............................................................................................................GCCCCATGCGAAGTGAGCCTCTAT..................................................................................................................... 24 0 2 0.50 1 0 1 0 0 0
...........................................................................................................................TGAGCCTCTATAAGTGTTTGTCAGTT...................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
...........................................................................................................................TGAGCCTCTATAAGTGTATGTCAGTT...................................................................................................... 26 1 3 0.33 1 1 0 0 0 0
.....................................................................................CAAAAGCCCACGCGCCCCCGAGGTCG............................................................................................................................................ 26 0 3 0.33 1 1 0 0 0 0
.............................CGCCTTCTTCTGGTCGTCTACCA....................................................................................................................................................................................................... 23 0 3 0.33 1 0 1 0 0 0
...................................................................................................................................................................................AGCCATCTTTAGAACCTACTAATAACCT............................................ 28 0 3 0.33 1 1 0 0 0 0
..............................................CTACCACGCAGCAGACCGTCCACACCC.................................................................................................................................................................................. 27 0 3 0.33 1 1 0 0 0 0
.....................................................................AGCCACACCCCCCTGACAAA.................................................................................................................................................................. 20 2 3 0.33 1 0 1 0 0 0
........................CCTGCCGCCTTCTTCTGGTCGTCT........................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0
..........................................................................................................................GTGAGCCTCTATAAGTGTTTGTCAG........................................................................................................ 25 0 3 0.33 1 1 0 0 0 0
........................................................................................................................................................................................................ATAACCTAGTGGGATCACAAAGATCT......................... 26 0 4 0.25 1 1 0 0 0 0
....................................................................................................................................................................................................ACTAATAACCTAGTGGGATCACAAAGA............................ 27 0 4 0.25 1 1 0 0 0 0
...........................................................................................................................................................................................................ACCTAGTGGGATCACAAAGATCT......................... 23 0 5 0.20 1 1 0 0 0 0
..........................................................................................................................................................................TTGTTTGTCAGTCATCTTTAGAACCT....................................................... 26 1 5 0.20 1 1 0 0 0 0
...................................................................................................................................TATAAGTGTGTGTTAGTTGTAA.................................................................................................. 22 3 7 0.14 1 0 0 1 0 0
..................................................................................................GCCCCCGAGGGCGCCCTA....................................................................................................................................... 18 2 7 0.14 1 0 0 1 0 0
......................................................................................................................................................................................................................TCACAAAGATCTACGGCTGAGTCGT............ 25 0 10 0.10 1 1 0 0 0 0
.............................................................................................................................................................................................................................TATCTACGGCTGAGTCGTGTGGGCGG.... 26 1 10 0.10 1 1 0 0 0 0
...................................................................................................................................................................................................................................CGGCTGTGTCGTGTGGGCG..... 19 1 11 0.09 1 0 0 0 0 1
...................................................................................................................................................................................................................................CGGCTGGGTCGTGTGGGCG..... 19 1 11 0.09 1 0 0 0 0 1
.................................................................................................................................................................................................................................TGCGGCTGGGTCGTGTGGGCG..... 21 2 11 0.09 1 1 0 0 0 0
................................................................................................................................................................................................................................CTACGGCTGAGTCGTGTGGGC...... 21 0 11 0.09 1 1 0 0 0 0
......................................................................................................................................AAATGTTTGTGAGTTATAGTT................................................................................................ 21 3 12 0.08 1 0 0 0 1 0
.........................................................................................................................................TGTTTGTGAGTTATAGTTA............................................................................................... 19 2 13 0.08 1 0 0 0 1 0
...................................................................................................CCCCCGAGTTGGCCCTATGC.................................................................................................................................... 20 3 14 0.07 1 0 1 0 0 0
..............................................TTACCACGCAGCAGGCCCT.......................................................................................................................................................................................... 19 3 17 0.06 1 1 0 0 0 0
....................................................................................................................................................................................................................................GGCGGAATCGTGTGGGCGC.... 19 3 18 0.06 1 0 0 1 0 0
........................................................................................................................................................................................................ATGACCTAGTGGGATGACG................................ 19 3 18 0.06 1 0 0 1 0 0
.........................................................................................................................................................................GTTGTTTGTCAGCCATCTTT.............................................................. 20 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................ACATGTTTGTGAGTTATAAT................................................................................................. 20 3 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13339:898066-898316 + dan_2803 TGGTGCCGCAGGAGATTTGGCCGGGGACGGCGGAA-----------------------------------GAAGACCAGCAGATGGTGCGTCGTCTGGCAGGTGTGGGTGTGGGGGGAATGTTTTCGGGTGCGCGGGGGCTCCAGCGGGGTA----------------------CGCTTCACTCGGAGATATTCACAAACAGTC-A-----------------------------ATATTAATATATAAACAATATTAA-------C-AAACAGTCGGTAGAAATCTTGGATGATTATTGGATCACCCTAGT-GTTTCTAGATGCCGACTCAGCACACCCGCC-TTTG
droBip1 scf7180000394850:11355-11570 + AGGTTGCAGAGACGGACTGGCCGCCGGAGCTCAGCGTGAGGGTGGCGGCGGATGTGGAGAGACGGCGCGGACGAGCCGGACGATAGTGCGTTATGGCGCAGG------GAGGAGCGGTTTACTTCCGGGTACGAGGAGGTGCCAACGGCGTA-----------------------------------------------------------------------------AAAGTAA--------------CGAGAAAAGGAAAAAA-----------AAATAAATTAAAAAAAAATATAGAATTAACAAGAA------------------------AAACGTAAAAAT
droKik1 scf7180000302765:8905-9077 - GAC-----------------------------------------------------------------------------------------------------------------------------------------------------GCACGGGAGATCCAGCAAGTAGTCGATAAATTCCAGATGACCGAGGACGGTC-ATATTCCTAAGGGGGGAA------TTGTTAA--------------CACTACTAAGGAGTAAT-CATAAGTCGGTACTAACCTTGGGTGATTATTGAATCACCCTAGT-A--TTTAAATGCAAAATCAGCGTAAACACC-TTTA
droFic1 scf7180000453907:106824-106954 + GCG--------------------------------------------------------------------------------------------------------------------------------------------------------GGGAAAGCCCCACAACCCACAGAC--------------------------AT--------------------ACATGTTAA--------------CACTGTTGAGGAGTAAT-TATAAGTCGATCAAGTTCTTGGGTGATTATCGGATCACCCTAGT-G--TTTAGTTGCAAGATTAGCATAAACGCC-TTTA
droEle1 scf7180000486616:19037-19206 + GAC-----------------------------------------------------------------------------------------------------------------------------------------------------GCACGGGAGATCCAACAAGTTGTTGACAAATTCCAGATGACCGAGGACGGTC-ATATTCCTAAGA---GAG------TTCTTAA--------------CACTGTTAAGGAGTAAT-CATAAGTCGATACAGATCTTGGGTGATTATTGGATCACCCAAGT-G--TTTAGTTGCAAAATCAGCATAAACATC-TTTA
droRho1 scf7180000776138:28164-28267 - AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTAA--------------CATTAATAAAGAGTAAC-AAACAGTCGGTAGAAATCTTGGATGATTCTTGGATCACCCTAGT-GTTTCTAGATGCCAACTCAGCATACCCGTC-TTTG
droBia1 scf7180000301585:22529-22672 - GCC-----------------------------------------------------------------------------------------------------------------------------------------------------TCACTCGG-GTCTAG---TA-------------------------CACAGTC-AT-----TATGA-GAGAATGTATTTTGTTAA--------------AACTGTTAAAAAATAAT-CATAAGTCGATACAGATTTTAGGTGATTATTGGACCACCCTAAT-G--TTTAGTTGCAAAATCAGCATAAACATC-TTTA
droTak1 scf7180000415223:5300-5472 + GAC-----------------------------------------------------------------------------------------------------------------------------------------------------GCACGGGAGATCCAACAAGTCGTTGACAAATTCCAGATGACCGAGGACAGTC-ATATTCCTAAGGGGGGAG------TTGTTAA--------------CACTGTTAAGGAGTGAT-TATAAGTCGATACAGATCTTGGGTGATTTTTGGATCACCCTAGT-G--TTTAGTTGCAAAATCAGCATAAACATC-TTAA
droEug1 scf7180000407458:15177-15285 - TAT-----------------------------------------------------------------------------------------------------------------------------------------------------GCAC-------------------------------------------------------------------------AAATTAA--------------CATTACTGAAGGGTAAC-AAATAGTCGGTAGAAATCCTGGATGACTCTTGGTTCACCCTAGA-GTTTCTAGATGCCGAATCAGCTTACACGCC-TTTG
dm3 chr3LHet:2543243-2543338 - TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGTTAA--------------CAAAATTAATGAATAACGTACCAGTCGGTATAAACCTTGGATAATTGTTGGAT-------------TTTATATGCAGATTCAGCATAAACATA-TTTA
droSim2 node_50072:7355-7456 + TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTAG--------------C--AATTAATGGGTAAA-CTTAAGTCGGTATAAGTCTTGGGTGATTATTGGATCACCCTAAAAATCTTTATAAGCAGATTCAGCTTAAACGCC-TGTA
droSec2 scaffold_46:107859-107950 + A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATGGGTAAA-CTTAAGTCGGTATAAGTCTTGGGTGATTATTGGATCACCCTAAAAATCTTTATAAGCAGATTCAGCTTAAACGCC-TGTA
droYak3 3L:23968889-23968979 + A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATAAGTAAA-CTTAAGTCGGTATAAGTCTTGGGTGATTATTGAATCACCCTAGT-GTCTTTATATGCAGATTCAAGATAAACGCC-TTTA
droEre2 scaffold_4845:1110418-1110547 - ATAC----------------------------------------------------------------------------------------------------------------------------------------------------ACATAAAAAA--------TA-------------------------TACAATAAGT--------------------ATAAGTTAA--------------GACAATTAATGAGTAAA-CTTAGGTCGGTATAAGTCATTGGTGATTATTGGATCAGCCTAGA-GTTTTTAAATGCCGATTCAGCATAAACGCC-TTTA
dp5 Unknown_singleton_959:117932-118038 + CGATCCCGCGGGAGGAGTGGCCGGCGGCAGTGAGC-----------------------------------CGCGCACAGGCCCAGATA---CGTCTCGTGGGTAGACGTGTGAAAAAG-------TTGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTACGCG-TTAC
droPer2 scaffold_28:53736-53837 + CGATCCCGCGGGAGGAGTGGCCGGCGGCGGTGATC-----------------------------------CGCGCACAGACCCAGATT---CGCTTCGTGGGTAGGCGAGTGAAAAAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT-ACGC
droWil2 scf2_1100000004967:2384828-2384886 + CGA-----------------------------------------------------------------------------------------------------------------------------------------------------ATAT----------------------------------ATCTAT------------------------GTA------TGCATAA--------------TATTAATATGGAAATAA-TATGA------GCGAATTATGG-------------------------------------------------------GTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TGGTGCCGCAGGAGATTTGGCCGGGGACGGCGGAA-----------------------------------GAAGACCAGCAGATGGTGCGTCGTCTGGCAGGTGTGGGTGTGGGGGGAATGTTTTCGGGTGCGCGGGGGCTCCAGCGGGGTA----------------------CGCTTCACTCGGAGATATTCACAAACAGTC-A-----------------------------ATATTAATATATAAACAATATTAA-------C-AAACAGTCGGTAGAAATCTTGGATGATTATTGGATCACCCTAGT-GTTTCTAGATGCCGACTCAGCACACCCGCC-TTTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................GGTAGAAATCTTGGATGATTATTG................................................2440.251100000
.......................................................................................................................................................................................................................................................................................................................T-GTTTCTAGATGCCGACTCAGCAC............24120.253300000
...............................................................................................................................................................................................................................................................................CAGTCGGTAGAAATCTTGGATGA......................................................2350.201100000
..................................................................................................................................................................................................................................................................................................................................TGCCGACTCAGCACACCCGCC-T...2290.111010000
..................................................................................................................................................................................................................................................................................................................................TGCCGACTCAGCACACCCGCC-TT..2390.111010000
............................................................................................................................................................................................................................................................................................................................TCTAGATGCCGACTCAGCACACCCGCC-....27100.101100000
.................................................................................................................................................................................................................................................................................GTCGGTAGAAATCTTGGATGATTA...................................................24100.101100000
................................................................................................................................................................................................................................................................TAA-------C-AAACAGTCGGTAGAAATCTTGG..........................................................26200.102101000
..............................................................................................................................................................................................................................................................................................................................TAGATGCCGACTCAGCACACCCGC......24110.091010000
............................................................................................................................................................................................................................................................................................................................TCTAGATGCCGACTCAGCACACCCGC......26110.091100000
...........................................................................................................................................................................................................................................................................................................................TTCTAGATGCCGACTCAGCACACCCG.......26110.091100000
.......................................................................................................................................................................................................................................................................................................................T-GTTTCTAGATGCCGACTCAGC..............22120.081100000
.......................................................................................................................................................................................................................................................................................................................T-GTTTCTAGATGCCGACTCAGCACAC..........26120.081100000
.......................................................................................................................................................................................................................................................................................................................T-GTTTCTAGATGCCGACTCAGCA.............23120.081100000
.......................................................................................................................................................................................................................................................................................................................T-GTTTCTAGATGCCGACTCAGCACACC.........27120.081100000
.........................................................................................................................................................................................................................................................................................................................GTTTCTAGATGCCGACTCAGC..............21120.081100000
................................................................................................................................................................................................................................................................................................................................GATGCCGACTCAGCACACCC........20120.081100000
...................................................................................................................................................................................................................................................................................CGGTAGAAATCTTGGATGAT.....................................................20130.081100000
............................................................................................................................................................................................................................................................................AAACAGTCGGTAGAAATCTTG...........................................................21200.051100000
..................................................................................................................................................................................................................................................................A-------C-AAACAGTCGGTAGAAATCC.............................................................21200.051010000
droBip1
AGGTTGCAGAGACGGACTGGCCGCCGGAGCTCAGCGTGAGGGTGGCGGCGGATGTGGAGAGACGGCGCGGACGAGCCGGACGATAGTGCGTTATGGCGCAGG------GAGGAGCGGTTTACTTCCGGGTACGAGGAGGTGCCAACGGCGTA-----------------------------------------------------------------------------AAAGTAA--------------CGAGAAAAGGAAAAAA-----------AAATAAATTAAAAAAAAATATAGAATTAACAAGAA------------------------AAACGTAAAAATSizeHit CountTotal NormTotal
No Reads
droKik1
GAC-----------------------------------------------------------------------------------------------------------------------------------------------------GCACGGGAGATCCAGCAAGTAGTCGATAAATTCCAGATGACCGAGGACGGTC-ATATTCCTAAGGGGGGAA------TTGTTAA--------------CACTACTAAGGAGTAAT-CATAAGTCGGTACTAACCTTGGGTGATTATTGAATCACCCTAGT-A--TTTAAATGCAAAATCAGCGTAAACACC-TTTASizeHit CountTotal NormTotal
No Reads
droFic1
GCG--------------------------------------------------------------------------------------------------------------------------------------------------------GGGAAAGCCCCACAACCCACAGAC--------------------------AT--------------------ACATGTTAA--------------CACTGTTGAGGAGTAAT-TATAAGTCGATCAAGTTCTTGGGTGATTATCGGATCACCCTAGT-G--TTTAGTTGCAAGATTAGCATAAACGCC-TTTASizeHit CountTotal NormTotal
No Reads
droEle1
GAC-----------------------------------------------------------------------------------------------------------------------------------------------------GCACGGGAGATCCAACAAGTTGTTGACAAATTCCAGATGACCGAGGACGGTC-ATATTCCTAAGA---GAG------TTCTTAA--------------CACTGTTAAGGAGTAAT-CATAAGTCGATACAGATCTTGGGTGATTATTGGATCACCCAAGT-G--TTTAGTTGCAAAATCAGCATAAACATC-TTTASizeHit CountTotal NormTotal
No Reads
droRho1
AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTAA--------------CATTAATAAAGAGTAAC-AAACAGTCGGTAGAAATCTTGGATGATTCTTGGATCACCCTAGT-GTTTCTAGATGCCAACTCAGCATACCCGTC-TTTGSizeHit CountTotal NormTotal
No Reads
droBia1
GCC-----------------------------------------------------------------------------------------------------------------------------------------------------TCACTCGG-GTCTAG---TA-------------------------CACAGTC-AT-----TATGA-GAGAATGTATTTTGTTAA--------------AACTGTTAAAAAATAAT-CATAAGTCGATACAGATTTTAGGTGATTATTGGACCACCCTAAT-G--TTTAGTTGCAAAATCAGCATAAACATC-TTTASizeHit CountTotal NormTotal
No Reads
droTak1
GAC-----------------------------------------------------------------------------------------------------------------------------------------------------GCACGGGAGATCCAACAAGTCGTTGACAAATTCCAGATGACCGAGGACAGTC-ATATTCCTAAGGGGGGAG------TTGTTAA--------------CACTGTTAAGGAGTGAT-TATAAGTCGATACAGATCTTGGGTGATTTTTGGATCACCCTAGT-G--TTTAGTTGCAAAATCAGCATAAACATC-TTAASizeHit CountTotal NormTotal
No Reads
droEug1
TAT-----------------------------------------------------------------------------------------------------------------------------------------------------GCAC-------------------------------------------------------------------------AAATTAA--------------CATTACTGAAGGGTAAC-AAATAGTCGGTAGAAATCCTGGATGACTCTTGGTTCACCCTAGA-GTTTCTAGATGCCGAATCAGCTTACACGCC-TTTGSizeHit CountTotal NormTotal
No Reads
dm3
TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGTTAA--------------CAAAATTAATGAATAACGTACCAGTCGGTATAAACCTTGGATAATTGTTGGAT-------------TTTATATGCAGATTCAGCATAAACATA-TTTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................TTGGATAATTGTTGGAT-------------TTT.............................2040.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TATAAACCTTGGATAATTGTT.................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................AA--------------CAAAATTAATGAATAACGT...............................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TAAACCTTGGATAATTGTTGG...............................................2140.2510000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................AACCTTGGATAATTGTTGGAT-------------TA..............................2340.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
droSim2
TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTAG--------------C--AATTAATGGGTAAA-CTTAAGTCGGTATAAGTCTTGGGTGATTATTGGATCACCCTAAAAATCTTTATAAGCAGATTCAGCTTAAACGCC-TGTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................TAATGGGTAAA-CTTAAGTCGGTATA..................................................................25236.507300000029181355030000
...............................................................................................................................................................................................................................................................TTAATGGGTAAA-CTTAAGTCGGTATA..................................................................2628.001600000061531000000
...................................................................................................................................................................................................................................................................TGGGTAAA-CTTAAGTCGGTATAAGTC..............................................................2626.501300000003342010000
...................................................................................................................................................................................................................................................................TGGGTAAA-CTTAAGTCGGTATAAGTCT.............................................................2723.50700000003020020000
................................................................................................................................................................................................................................................................TAATGGGTAAA-CTTAAGTCGGTATAA.................................................................2622.00400000002100010000
................................................................................................................................................................................................................................................................TAATGGGTAAA-CTTAAGTCGGTA....................................................................2322.00400000030000010000
.............................................................................................................................................................................................................................................................AATTAATGGGTAAA-CTTAAGTCGGTA....................................................................2622.00400000011011000000
......................................................................................................................................................................................................................................................................................TATAAGTCTTGGGTGATTATTGGA..............................................2422.00400000011110000000
..............................................................................................................................................................................................................................................................................................................TCACCCTAAAAATCTTTATAAGCAGA....................2612.00200000001100000000
..............................................................................................................................................................................................................................................................................TAAGTCGGTATAAGTCTTGGGTGATTA...................................................2722.00400000001120000000
................................................................................................................................................................................................................................................................TAATGGGTAAA-CTTAAGTCGGTATAAGTC..............................................................2921.50300000010110000000
..................................................................................................................................................................................................................................................................................TCGGTATAAGTCTTGGGTGATTATTGGA..............................................2821.50300000000300000000
..........................................................................................................................................................................................................................................AG--------------C--AATTAATGGGTAAA-CTTAAGTCGG......................................................................2721.00200000000110000000
......................................................................................................................................................................................................................................................................................TATAAGTCTTGGGTGATTATTGGAT.............................................2521.00200000000110000000
................................................................................................................................................................................................................................................................TAATGGGTAAA-CTTAAGTCGGTATAAG................................................................2721.00200000011000000000
......................................................................................................................................................................................................................................................................................TATAAGTCTTGGGTGATTATTGGATC............................................2621.00200000000200000000
...............................................................................................................................................................................................................................................................TTAATGGGTAAA-CTTAAGTCGGTA....................................................................2421.00200000010100000000
.............................................................................................................................................................................................................................................................................................................ATCACCCTAAAAATCTTTATAAGCAGA....................2711.00100000001000000000
................................................................................................................................................................................................................................................................TAATGGGTAAA-CTTAAGTCGGTATAAGT...............................................................2821.00200000001100000000
.A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTAG--------------C--AATTAATGGGTAAA-CTTAA...........................................................................2711.00100010000000000000
...............................................................................................................................................................................................................................................................TTAATGGGTAAA-CTTAAGTCGGTATAA.................................................................2721.00200000001100000000
.................................................................................................................................................................................................................................................................AATGGGTAAA-CTTAAGTCGGTATAAGTC..............................................................2821.00200000000110000000
................................................................................................................................................................................................................................................................................................................................TAAGCAGATTCAGCTTAAACGCC-TGTA2711.00100000000100000000
.........................................................................................................................................................................................................................................TAG--------------C--AATTAATGGGTAAA-CTTAAGTCGG......................................................................2821.00200000001010000000
................................................................................................................................................................................................................................................................TAATGGGTAAA-CTTAAGTCGGTAT...................................................................2421.00200000001100000000
..............................................................................................................................................................................................................................................................................TAAGTCGGTATAAGTCTTGGGTGA......................................................2421.00200000000002000000
....................................................................................................................................................................................................................................................................................GGTATAAGTCTTGGGTGATTATTGGA..............................................2621.00200000010001000000
..........................................................................................................................................................................................................................................................................................................TGGATCACCCTAAAAATCTTTATAAGCAGA....................3011.00100000001000000000
........................................................................................................................................................................................................................................................................................TAAGTCTTGGGTGATTATTGGATC............................................2431.00300000000021000000
........................................................................................................................................................................................................................................................................................TAAGTCTTGGGTGATTATTGGATCA...........................................2530.67200000002000000000
...................................................................................................................................................................................................................................................................................CGGTATAAGTCTTGGGTGATTATTGGA..............................................2720.50100000000010000000
.......................................................................................................................................................................................................................................................................TAAA-CTTAAGTCGGTATAAGTCT.............................................................2320.50100000000000010000
.................................................................................................................................................................................................................................................................AATGGGTAAA-CTTAAGTCGGT.....................................................................2120.50100000000100000000
.....................................................................................................................................................................................................................................................................GGTAAA-CTTAAGTCGGTATAAGTCT.............................................................2520.50100000001000000000
..................................................................................................................................................................................................................................................................................TCGGTATAAGTCTTGGGTGATTAT..................................................2420.50100000000010000000
.............................................................................................................................................................................................................................................................AATTAATGGGTAAA-CTTAAGTCGGTATA..................................................................2820.50100000010000000000
...............................................................................................................................................................................................................................................................TTAATGGGTAAA-CTTAAGTCGGTAT...................................................................2520.50100000000000010000
...................................................................................................................................................................................................................................................................TGGGTAAA-CTTAAGTCGGTATAAGT...............................................................2520.50100000000100000000
................................................................................................................................................................................................................................................................TAATGGGTAAA-CTTAAGTCGGT.....................................................................2220.50100000010000000000
...............................................................................................................................................................................................................................................................TTAATGGGTAAA-CTTAAGTCGGTATAAGTC..............................................................3020.50100000010000000000
..................................................................................................................................................................................................................................................................ATGGGTAAA-CTTAAGTCGGTATAAGTC..............................................................2720.50100000001000000000
..........................................................................................................................................................................................................................................................................A-CTTAAGTCGGTATAAGTCTTGGGT........................................................2520.50100000000001000000
...................................................................................................................................................................................................................................................................TGGGTAAA-CTTAAGTCGGTA....................................................................2020.50100000010000000000
.........................................................................................................................................................................................................................................TAG--------------C--AATTAATGGGTAAA-CTTAAGTCG.......................................................................2720.50100000001000000000
..........................................................................................................................................................................................................................................................C--AATTAATGGGTAAA-CTTAAGTCGGTG....................................................................2720.50100000001000000000
...................................................................................................................................................................................................................................................................TGGGTAAA-CTTAAGTC........................................................................1620.50100000000001000000
........................................................................................................................................................................................................................................TTAG--------------C--AATTAATGGGTAAA-CTTAAGTCGG......................................................................2920.50100000010000000000
........................................................................................................................................................................................................................................................................AAA-CTTAAGTCGGTATAAGTCTTGGG.........................................................2620.50100000000001000000
...........................................................................................................................................................................................................................................................................................GTCTTGGGTGATTATTGGATCACCCTAA.....................................2820.50100000000001000000
.............................................................................................................................................................................................................................................................AATTAATGGGTAAA-CTTAAGTCGGT.....................................................................2520.50100000001000000000
........................................................................................................................................................................................................................................................................................TAAGTCTTGGGTGATTATTGGATCACC.........................................2730.33100010000000000000
...................................................................................................................................................................................................................................................................TGGGTAAA-CTTAAGTCGGTAA...................................................................2170.29200000011000000000
......................................................................................................................................................................................................................................................................GTAAA-CTTAAGTCGGTATAAGTC..............................................................2340.25100000000001000000
...............................................................................................................................................................................................................................................................................................TGGGTGATTATTGGATC............................................1790.11100000000001000000
droSec2
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATGGGTAAA-CTTAAGTCGGTATAAGTCTTGGGTGATTATTGGATCACCCTAAAAATCTTTATAAGCAGATTCAGCTTAAACGCC-TGTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATAAGTAAA-CTTAAGTCGGTATAAGTCTTGGGTGATTATTGAATCACCCTAGT-GTCTTTATATGCAGATTCAAGATAAACGCC-TTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ATAC----------------------------------------------------------------------------------------------------------------------------------------------------ACATAAAAAA--------TA-------------------------TACAATAAGT--------------------ATAAGTTAA--------------GACAATTAATGAGTAAA-CTTAGGTCGGTATAAGTCATTGGTGATTATTGGATCAGCCTAGA-GTTTTTAAATGCCGATTCAGCATAAACGCC-TTTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
CGATCCCGCGGGAGGAGTGGCCGGCGGCAGTGAGC-----------------------------------CGCGCACAGGCCCAGATA---CGTCTCGTGGGTAGACGTGTGAAAAAG-------TTGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTACGCG-TTACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................TGTGAAAAAG-------TTGGTAAGCGA--------GC..........................................................................................................................................................................................................2393.893503200012000
........................................................................................................GACGTGTGAAAAAG-------TTGGTAAGC......................................................................................................................................................................................................................2393.783403000001300
.......................................................................................................AGACGTGTGAAAAAG-------TTGGTAAGC......................................................................................................................................................................................................................2492.782502200012000
............................................................................................................TGTGAAAAAG-------TTGGTAAGCGA--------G...........................................................................................................................................................................................................2292.111901700002000
.......................................................................................................AGACGTGTGAAAAAG-------TTGGTAAG.......................................................................................................................................................................................................................2391.56140700002410
........................................................................................................GACGTGTGAAAAAG-------TTGGTAAG.......................................................................................................................................................................................................................2291.56140600000800
...........................................................................................................GTGTGAAAAAG-------TTGGTAAGCGA--------............................................................................................................................................................................................................2291.0090900000000
............................................................................................................TGTGAAAAAG-------TTGGTAAGCGA--------............................................................................................................................................................................................................2191.0090800001000
............................................................................................................TGTGAAAAAG-------TTGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A.............2590.7870700000000
........................................................................................................GACGTGTGAAAAAG-------TTGGTAAGCGA--------GC..........................................................................................................................................................................................................2790.6760600000000
........................................................................................................GACGTGTGAAAAAG-------TTGGTAAGCG.....................................................................................................................................................................................................................2490.6760600000000
........................................................................................................GACGTGTGAAAAAG-------TTGGTAAGCGA--------............................................................................................................................................................................................................2590.6760400001100
........................CGGCAGTGAGC-----------------------------------CGCGCACAGG............................................................................................................................................................................................................................................................................21160.5690800000100
........................CGGCAGTGAGC-----------------------------------CGCGCACAGGC...........................................................................................................................................................................................................................................................................22160.5690801000000
..........................................................................CACAGGCCCAGATA---CGTCT............................................................................................................................................................................................................................................................1990.5650400000100
...........................................................................................................GTGTGAAAAAG-------TTGGTAAGCGA--------GC..........................................................................................................................................................................................................2490.5650500000000
...........................................................................................................GTGTGAAAAAG-------TTGGTAAGCGA--------G...........................................................................................................................................................................................................2390.5650500000000
...........................................................................................................GTGTGAAAAAG-------TTGGTAAGCG.....................................................................................................................................................................................................................2190.5650500000000
...................................................................................................................AAG-------TTGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTAC........23100.5050400001000
.......................................................................................................AGACGTGTGAAAAAG-------TTGGTAAGCGA--------G...........................................................................................................................................................................................................2790.4440400000000
............................................................................................................TGTGAAAAAG-------TTGGTAAGCG.....................................................................................................................................................................................................................2090.3330300000000
............................................................................................................TGTGAAAAAG-------TTGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..............2490.3330300000000
..............................TGAGC-----------------------------------CGCGCACAGGCCCAGATA---CG...............................................................................................................................................................................................................................................................25160.2540400000000
........................................................................................................GACGTGTGAAAAAG-------TTGGTAA........................................................................................................................................................................................................................2190.2220200000000
........................................................................................................GACGTGTGAAAAAG-------TTGGTAAGCGA--------G...........................................................................................................................................................................................................2690.2220100000100
.............................................................................................................GTGAAAAAG-------TTGGTAAGCGA--------GC..........................................................................................................................................................................................................2290.2220200000000
........................................................................................................GACGTGTGAAAAAG-------TTGG...........................................................................................................................................................................................................................1890.2220200000000
..........................................................................CACAGGCCCAGATA---CGTCTCGT.........................................................................................................................................................................................................................................................2290.2220200000000
..............................TGAGC-----------------------------------CGCGCACAGGCCCAGATA---CGTC.............................................................................................................................................................................................................................................................2790.2220200000000
.......................................................................................................AGACGTGTGAAAAAG-------TTGGTA.........................................................................................................................................................................................................................2190.2220200000000
......................................................................................................TAGACGTGTGAAAAAG-------TTGGTAAG.......................................................................................................................................................................................................................2490.2220000010100
.......................................................................................................AGACGTGTGAAAAAG-------TTGGTAAGCG.....................................................................................................................................................................................................................2590.2220100000100
......................................................................................................TAGACGTGTGAAAAAG-------TTGGTAAGC......................................................................................................................................................................................................................2590.2220200000000
............................................................................................................TGTGAAAAAG-------TTGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG............2690.2220200000000
..........................................................................................................CGTGTGAAAAAG-------TTGGTAAGCGA--------............................................................................................................................................................................................................2390.2220200000000
.........................................................................................................ACGTGTGAAAAAG-------TTGGTAAGC......................................................................................................................................................................................................................2290.2220200000000
...TCCCGCGGGAGGAGTGGCCG.....................................................................................................................................................................................................................................................................................................................................20200.2040400000000
.....CCGCGGGAGGAGTGGCCG.....................................................................................................................................................................................................................................................................................................................................18200.2040400000000
...............AGTGGCCGGCGGCAGTGA...........................................................................................................................................................................................................................................................................................................................18200.2040400000000
...TCCCGCGGGAGGAGTGGCC......................................................................................................................................................................................................................................................................................................................................19200.1530300000000
..............GAGTGGCCGGCGGCAGTGA...........................................................................................................................................................................................................................................................................................................................19200.1530300000000
.............................................................................................................................TTGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTACGCG-T...24150.1320000000200
........................CGGCAGTGAGC-----------------------------------CGCGCACAGGCC..........................................................................................................................................................................................................................................................................23160.1320200000000
..............................TGAGC-----------------------------------CGCGCACAGGCCCAGAT.....................................................................................................................................................................................................................................................................22160.1320200000000
.................................GC-----------------------------------CGCGCACAGGCCCAGATA---CG...............................................................................................................................................................................................................................................................22160.1320200000000
.................TGGCCGGCGGCAGTGAGC-----------------------------------CGCG..................................................................................................................................................................................................................................................................................22160.1320200000000
........................................................................................................GACGTGTGAAAAAG-------TTGGTAAGT......................................................................................................................................................................................................................2390.1110100000000
..........................................................................CACAGGCCCAGATA---CGTCTCGTGGG......................................................................................................................................................................................................................................................2590.1110000100000
..........................................................................CACAGGCCCAGATA---CGTCTCGTG........................................................................................................................................................................................................................................................2390.1110100000000
.........................................................................................................ACGTGTGAAAAAG-------TTGGTAAGCGA--------............................................................................................................................................................................................................2490.1110100000000
........................................................................................................GACGTGTGAAAAAG-------TTGGTAAA.......................................................................................................................................................................................................................2290.1110100000000
..........................................................................................................CGTGTGAAAAAG-------TTGGTAAGCGA--------G...........................................................................................................................................................................................................2490.1110100000000
...........................................................................................................GTGTGAAAAAG-------TTGGTAAG.......................................................................................................................................................................................................................1990.1110100000000
.......................................................................................................AGACGTGTGAAAAAG-------TTGGTAAA.......................................................................................................................................................................................................................2390.1110100000000
..................................................................................CAGATA---CGTCTCGTGGGTAGA..................................................................................................................................................................................................................................................2190.1110000000100
..........................................................................................................CGTGTGAAAAAG-------TTGGTAAGCGA--------GC..........................................................................................................................................................................................................2590.1110100000000
.......................................................................................................AGACGTGTGAAAAAG-------TTGGTAAAAA.....................................................................................................................................................................................................................2590.1110100000000
............................................................................................................TGTGAAAAAG-------TTGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG...........2790.1110100000000
.................................................................................CCAGATA---CGTCTCGTGGG......................................................................................................................................................................................................................................................1890.1110100000000
.......................................................................................................AGACGTGTGAAAAAG-------TTGGTAA........................................................................................................................................................................................................................2290.1110100000000
......................................................................................................TAGACGTGTGAAAAAG-------TTGGT..........................................................................................................................................................................................................................2190.1110100000000
...........................................................................................................GTGTGAAAAAG-------TTGGTAAGCGA--------GA..........................................................................................................................................................................................................2490.1110100000000
...........................................................................................................GTGTGAAAAAG-------TTGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A.............2690.1110100000000
.................................GC-----------------------------------CGCGCACAGGCCCAGATA---CGTCTC...........................................................................................................................................................................................................................................................2690.1110100000000
......................................................................................................TAGACGTGTGAAAAAG-------TTGGTA.........................................................................................................................................................................................................................2290.1110100000000
...........................................................................ACAGGCCCAGATA---CGTCTCGTG........................................................................................................................................................................................................................................................2290.1110100000000
.............................................................................................................GTGAAAAAG-------TTGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..............2390.1110100000000
...........................................................................................................GTGTGAAAAAG-------TTGGTAAGC......................................................................................................................................................................................................................2090.1110100000000
......................................................................................................TAGACGTGTGAAAAAG-------TTGGTAAGCGA--------............................................................................................................................................................................................................2790.1110100000000
......................................................................................................TAGACGTGTGAAAAAG-------TTGG...........................................................................................................................................................................................................................2090.1110000010000
......................................................................................................TAGACGTGTGAAAAAG-------TTGGTAA........................................................................................................................................................................................................................2390.1110000000100
.....................................................................................................GTAGACGTGTGAAAAAG-------TTGG...........................................................................................................................................................................................................................2190.1110100000000
.............................................................................................................GTGAAAAAG-------TTGGTAAGCGA--------AG..........................................................................................................................................................................................................2290.1110100000000
..................................................................................................................AAAG-------TTGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA..........2290.1110000000010
......CGCGGGAGGAGTGGCCGGC...................................................................................................................................................................................................................................................................................................................................19200.1020100000100
...................................................................................................................AAG-------TTGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTA.........22100.1010000001000
...TCCCGCGGGAGGAGTGGCCGGCGGCA...............................................................................................................................................................................................................................................................................................................................26200.1020200000000
..................................C-----------------------------------CGCGCACAGGCCCAGATA---CG...............................................................................................................................................................................................................................................................21200.1020200000000
.........GGGAGGAGTGGCCGGCGGCAGT.............................................................................................................................................................................................................................................................................................................................22200.1020200000000
...................................................................................................................AAG-------TTGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTACG.......24100.1010000000100
.................................................................................................................................TAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTACGCG-TT..21150.0710010000000
..............................................................................................................................TGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTACGCG-T...23150.0710100000000
.................................................................................................................................TAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTACGCG-TTAC23150.0710100000000
.........................GGCAGTGAGC-----------------------------------CGCGCACAGG............................................................................................................................................................................................................................................................................20160.0610100000000
.......................GCGGCAGTGAGC-----------------------------------CGCGCACAGGCC..........................................................................................................................................................................................................................................................................24160.0610100000000
.....................CGGCGGCAGTGAGC-----------------------------------CGCGCACAGGCC..........................................................................................................................................................................................................................................................................26160.0610100000000
.................TGGCCGGCGGCAGTGAGC-----------------------------------......................................................................................................................................................................................................................................................................................18160.0610100000000
...................GCCGGCGGCAGTGAGC-----------------------------------CGCGCA................................................................................................................................................................................................................................................................................22160.0610100000000
..........................GCAGTGAGC-----------------------------------CGCGCACAGGCCCAGA......................................................................................................................................................................................................................................................................25160.0610100000000
..........................GCAGTGAGC-----------------------------------CGCGCACAGG............................................................................................................................................................................................................................................................................19160.0610100000000
.......................GCGGCAGTGAGC-----------------------------------CGCGCACAGG............................................................................................................................................................................................................................................................................22160.0610100000000
.................TGGCCGGCGGCAGTGAGC-----------------------------------C.....................................................................................................................................................................................................................................................................................19160.0610100000000
..............................TGAGC-----------------------------------CGCGCACAGGCCCAGA......................................................................................................................................................................................................................................................................21160.0610100000000
.........................GGCAGTGAGC-----------------------------------CGCGCACAGGC...........................................................................................................................................................................................................................................................................21160.0610100000000
.............GGAGTGGCCGGCGGCAGTGAG..........................................................................................................................................................................................................................................................................................................................21160.0610100000000
................................AGC-----------------------------------CGCGCACAGGCCCAGATA---CG...............................................................................................................................................................................................................................................................23160.0610100000000
...............................GAGC-----------------------------------CGCGCACAGGCCCAGATA---CG...............................................................................................................................................................................................................................................................24160.0610100000000
..............................TGAGC-----------------------------------CGCGCACAGGCCCAGATA---CGA..............................................................................................................................................................................................................................................................26160.0610100000000
.........................GGCAGTGAGC-----------------------------------CGCGCACAGGCCC.........................................................................................................................................................................................................................................................................23160.0610100000000
..............................................................................................................................TGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTAC........19170.0610100000000
..............................................................................................................................TGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTACGC......21170.0610100000000
..............................................................................................................................TGGTAAGCGA--------GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTACG.......20170.0610000000100
.................TGGCCGGCGGCAGTGAGT-----------------------------------A.....................................................................................................................................................................................................................................................................................19170.0610100000000
....CCCGCGGGAGGAGTGGCCGGC...................................................................................................................................................................................................................................................................................................................................21200.0510100000000
........CGGGAGGAGTGGCCGGCGGCAG..............................................................................................................................................................................................................................................................................................................................22200.0510100000000
...........GAGGAGTGGCCGGCGGCAGTGA...........................................................................................................................................................................................................................................................................................................................22200.0510100000000
...TCCCGCGGGAGGAGTGGCCTT....................................................................................................................................................................................................................................................................................................................................21200.0510100000000
........CGGGAGGAGTGGCCGGCGGC................................................................................................................................................................................................................................................................................................................................20200.0510100000000
..........GGAGGAGTGGCCGGCGGCAC..............................................................................................................................................................................................................................................................................................................................20200.0510100000000
...TCCCGCGGGAGGAGTGGCCGGC...................................................................................................................................................................................................................................................................................................................................22200.0510100000000
..........................................................................CACAGGCCCAGATA---CG...............................................................................................................................................................................................................................................................16200.0510000000100
.........GGGAGGAGTGGCCGGCGGCA...............................................................................................................................................................................................................................................................................................................................20200.0510100000000
........................................................................CGCACAGGCCCAGATA---CG...............................................................................................................................................................................................................................................................18200.0510100000000
...TCCCGCGGGAGGAGTGGCCGG....................................................................................................................................................................................................................................................................................................................................21200.0510100000000
.....CCGCGGGAGGAGTGGCCGG....................................................................................................................................................................................................................................................................................................................................19200.0510100000000
...TCCCGCGGGAGGAGTGGCCGT....................................................................................................................................................................................................................................................................................................................................21200.0510100000000
......CGCGGGAGGAGTGGCCGGCGGCAAA.............................................................................................................................................................................................................................................................................................................................25200.0510100000000
....CCCGCGGGAGGAGTGGCCG.....................................................................................................................................................................................................................................................................................................................................19200.0510100000000
....CCCGCGGGAGGAGTGGCCGGCG..................................................................................................................................................................................................................................................................................................................................22200.0510100000000
.......GCGGGAGGAGTGGCCGGCGG.................................................................................................................................................................................................................................................................................................................................20200.0510100000000
CGATCCCGCGGGAGGAGTGGCC......................................................................................................................................................................................................................................................................................................................................22200.0510100000000
droPer2
CGATCCCGCGGGAGGAGTGGCCGGCGGCGGTGATC-----------------------------------CGCGCACAGACCCAGATT---CGCTTCGTGGGTAGGCGAGTGAAAAAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT-ACGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................CCAGATT---CGCTTCGTGGGTAGG..................................................................................................................................................................................................................................................2218.008080000
.................................................................................CCAGATT---CGCTTCGTGGGTAGGC.................................................................................................................................................................................................................................................2314.004022000
...................................................................................................................AAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT-AC..23102.50250230002
...................................................................................................................AAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT-....21102.00200190001
...............................................................................ACCCAGATT---CGCTTCGTGGGTAGG..................................................................................................................................................................................................................................................2412.002020000
...............................................................................ACCCAGATT---CGCTTCGTGGGTAG...................................................................................................................................................................................................................................................2312.002020000
.................................................................................CCAGATT---CGCTTCGTGGGTAG...................................................................................................................................................................................................................................................2112.002020000
...................................................................................................................AAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT-A...22101.70170170000
...................................................................................................................AAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGG......20111.27140131000
...................................................................................................................AAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG.......19111.18130121000
.................................................................................CCAGATT---CGCTTCGTGGGTAGGCG................................................................................................................................................................................................................................................2411.001010000
.................................................................................CCAGATT---CGCTTCGTGGGTAGGTT................................................................................................................................................................................................................................................2411.001010000
.....................................................................................ATT---CGCTTCGTGGGTAGGC.................................................................................................................................................................................................................................................1911.001010000
..................................................................................CAGATT---CGCTTCGTGGGTAGGCG................................................................................................................................................................................................................................................2311.001010000
...............................................................................ACCCAGATT---CGCTTCGTGGGTAGGC.................................................................................................................................................................................................................................................2511.001010000
.................................................................................CCAGATT---CGCTTCGTGGGTAGGCGAG..............................................................................................................................................................................................................................................2611.001010000
.................................................................................................GTGGGTAGGCGAGTGAAA.........................................................................................................................................................................................................................................1821.002020000
...................................................................................................................AAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT-ACG.2460.835040001
...................................................................................................................AAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G........18110.738071000
....................................................................................................................AA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT-A...21100.606060000
........................................................................................................GGCGAGTGAAAAAA-------CTGGTGAGCGA--------............................................................................................................................................................................................................2520.501010000
...................................................................................................................AAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT-ACGC2560.332010001
...............................................................................................................GAAAAAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C........2240.251010000
............................................................................................................AGTGAAAAAA-------CTGGTGAGCGA--------AAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........2440.251010000
..............................................................................................................TGAAAAAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G........2340.251010000
..............................................................................................................TGAAAAAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG.......2440.251010000
..............................................................................................................TGAAAAAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGG......2540.251010000
................................................................................................................AAAAAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........2050.201010000
...............AGTGGCCGGCGGCGGTGATC-----------------------------------C.....................................................................................................................................................................................................................................................................................2150.201010000
...................................................................................................................AAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA......20110.182020000
....................................................................................................................AA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGG......19110.182020000
.................TGGCCGGCGGCGGTGATC-----------------------------------CGC...................................................................................................................................................................................................................................................................................2160.171010000
.................TGGCCGGCGGCGGTGATC-----------------------------------CGCG..................................................................................................................................................................................................................................................................................2260.171010000
.................TGGCCGGCGGCGGTGATC-----------------------------------CGCGC.................................................................................................................................................................................................................................................................................2360.171010000
.................................................................................................................AAAAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG.......2160.171001000
......CGCGGGAGGAGTGGCCGGCG..................................................................................................................................................................................................................................................................................................................................2080.131000010
.......GCGGGAGGAGTGGCCGGCGGC................................................................................................................................................................................................................................................................................................................................2180.131000001
......CGCGGGAGGAGTGGCCGG....................................................................................................................................................................................................................................................................................................................................1890.111010000
....................................................................................................................AA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT-AC..22100.101010000
....................................................................................................................AA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT-ACT.23100.101010000
..ATCCCGCGGGAGGAGTGGCC......................................................................................................................................................................................................................................................................................................................................20100.101010000
.GATCCCGCGGGAGGAGTGGC.......................................................................................................................................................................................................................................................................................................................................20100.101000001
...................................................................................................................AAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT......20110.091000010
...................................................................................................................AAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C........18110.091010000
...................................................................................................................AAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT-ACA.24110.091010000
...................................................................................................................AAA-------CTGGTGAGCGA--------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA......20120.081010000
droWil2
CGA-----------------------------------------------------------------------------------------------------------------------------------------------------ATAT----------------------------------ATCTAT------------------------GTA------TGCATAA--------------TATTAATATGGAAATAA-TATGA------GCGAATTATGG-------------------------------------------------------GTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................GGAAATAA-TATGA------GCGAATTATGG-------------------------------------------------------G..2520.50101000

Generated: 05/18/2015 at 05:29 AM