ID:

dan_28

 Coordinate:

scaffold_12943:1815567-1815630 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.1 -32.9 -32.6

Flybase annnotation

utr3 [utr3_minus_1364]

No Repeatable elements found

Sense Strand Reads

AGTGTTCACTTGTGGAAAAGAGGTTGAATCCTAAATTATGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATATATTCAAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTTAAAGTCGGCTAAAATAAGTTTCAAGCATTTCAAGCCAAA

***********************************..((((.((((.(((.((((((((..(((((((.(((((((...........))))))).))))))))))))))).))).)))))))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total V039

embryo

 M058

embryo

 V106

head

 M044

female body

 V105

male body		 V055

head
..................................................TAAGTAGTATCCATTAAAGGGTCG.......................................................................................... 24 0 1 2167.00 2167 1629 469 41 3 14 11
..................................................TAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 275.00 275 105 110 17 31 12 0
..................................................TAAGTAGTATCCATTAAAGG.............................................................................................. 20 0 1 243.00 243 10 233 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTC........................................................................................... 23 0 1 201.00 201 42 159 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTCG.......................................................................................... 24 2 1 80.00 80 57 22 0 1 0 0
...........................................................................................ACCGTTTGATGTACTACTTTAG................................................... 22 0 1 61.00 61 8 53 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGT............................................................................................ 22 0 1 50.00 50 9 40 1 0 0 0
..................................................TAAGTAGTATCCATTAAAG............................................................................................... 19 0 1 49.00 49 9 40 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCG.......................................................................................... 24 2 1 39.00 39 23 16 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTGTCG.......................................................................................... 24 1 1 38.00 38 38 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTCT.......................................................................................... 24 1 1 34.00 34 33 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGTCG.......................................................................................... 24 1 1 27.00 27 26 0 0 0 0 1
.................................................TTAAGTAGTATCCATTAAAGGGTC........................................................................................... 24 0 1 27.00 27 1 26 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTCC.......................................................................................... 24 1 1 24.00 24 19 5 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGG............................................................................................. 21 0 1 21.00 21 1 20 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 20.00 20 1 19 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTCG.......................................................................................... 24 1 1 20.00 20 20 0 0 0 0 0
..................................................TAAGTAGTATCCATTACAGGGTCG.......................................................................................... 24 1 1 15.00 15 15 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACGGGTCG.......................................................................................... 24 1 1 13.00 13 13 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 12.00 12 10 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGGCG.......................................................................................... 24 1 1 10.00 10 10 0 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGG.............................................................................................. 20 1 1 9.00 9 0 9 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGGTCG.......................................................................................... 24 1 1 9.00 9 9 0 0 0 0 0
............................................................................................CCGTTTGATGTACTACTTTAGG.................................................. 22 0 1 9.00 9 3 6 0 0 0 0
..................................................TAAGTAGTAACCTTTAAAGGGTCG.......................................................................................... 24 2 1 9.00 9 0 0 9 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTT.......................................................................................... 24 2 1 9.00 9 7 0 2 0 0 0
..................................................TAAGTAGCATCCATTAAAGGGTCG.......................................................................................... 24 1 1 9.00 9 8 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTT........................................................................................... 23 1 1 8.00 8 6 1 0 1 0 0
..................................................TAAGTAGTATCCATTAAAGCGTCG.......................................................................................... 24 1 1 8.00 8 8 0 0 0 0 0
..................................................TAAGTAGGATCCATTAAAGGGTCG.......................................................................................... 24 1 1 8.00 8 8 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGCCG.......................................................................................... 24 1 1 8.00 8 7 1 0 0 0 0
..................................................TAATTAGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 7.00 7 2 5 0 0 0 0
..................................................TAAGTAGTATCCATTAAACGGTCG.......................................................................................... 24 1 1 7.00 7 7 0 0 0 0 0
..................................................TAAGAAGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 7.00 7 6 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGTTG.......................................................................................... 24 2 1 7.00 7 5 0 2 0 0 0
..................................................TAAGTAGTATCCATTAAGGGGTCG.......................................................................................... 24 1 1 7.00 7 4 3 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTCGC......................................................................................... 25 1 1 7.00 7 3 4 0 0 0 0
..................................................TAGGTAGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 6.00 6 5 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTCGT......................................................................................... 25 0 1 6.00 6 2 4 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGCTCG.......................................................................................... 24 1 1 6.00 6 5 1 0 0 0 0
....................................................AGTAGTATCCATTAAAGGGTCG.......................................................................................... 22 0 1 6.00 6 4 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGGTCG.......................................................................................... 24 1 1 6.00 6 6 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAAGGGT............................................................................................ 23 0 1 6.00 6 1 5 0 0 0 0
...........................................................................................ACAGTTTGATGTACTACTTTAG................................................... 22 1 1 5.00 5 0 5 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 5.00 5 0 5 0 0 0 0
..................................................TAAGCAGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 5.00 5 4 1 0 0 0 0
.................................................TTAAGTAGTATCCATTAAAGG.............................................................................................. 21 0 1 5.00 5 0 5 0 0 0 0
..................................................TAAGTATTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................ACCGTTTGATGTACTACTTTA.................................................... 21 0 1 4.00 4 0 4 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGATCG.......................................................................................... 24 1 1 4.00 4 3 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTTG.......................................................................................... 24 2 1 4.00 4 3 0 0 0 1 0
..................................................TAAGTAGTATCCATTAAAGTGTCT.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAA................................................................................................ 18 0 1 4.00 4 3 1 0 0 0 0
..................................................TAAGTAGTACCCATTAAAGGGTCG.......................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
..................................................TTAGTAGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 4.00 4 1 3 0 0 0 0
...................................................AAGTAGTATCCATTAAAGGGTTG.......................................................................................... 23 1 1 4.00 4 1 0 0 3 0 0
...................................................AAGTAGTATCCATTAAAGGGTCG.......................................................................................... 23 0 1 4.00 4 2 2 0 0 0 0
.................................................CTAAGTAGTATCCATTAAAGGGTCG.......................................................................................... 25 1 1 4.00 4 1 3 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTCC.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTTAAGGGTCG.......................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTCTCCATTAAAGGGTCG.......................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGTTCG.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
.................................................TGAAGTAGTATCCATTAAAGGGTC........................................................................................... 24 1 1 3.00 3 0 3 0 0 0 0
..................................................TACGTAGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 3.00 3 1 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGC............................................................................................ 22 1 1 3.00 3 0 3 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGAGTCG.......................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTTTCG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCGTTAAAGGGTCG.......................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTGTC........................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTACAGGGTCC.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTCT.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGTC........................................................................................... 24 2 1 3.00 3 1 2 0 0 0 0
..................................................TAAGTAGTATCTATTAAAGGGTCG.......................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
..................................................TAATTAGTATCCATTAAAGGGTC........................................................................................... 23 1 1 3.00 3 0 3 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTC........................................................................................... 23 2 1 3.00 3 1 2 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGGGTC........................................................................................... 23 1 1 3.00 3 0 3 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTAG.......................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGCGCCG.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAACGGGCG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGGATCCATTAAGAGGTCG.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
...........................................................................................ACCGTTTGATGTACTACC....................................................... 18 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATTCATTAAAGGGTCG.......................................................................................... 24 1 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTACTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TTAGTAGTATCCATTAAAGG.............................................................................................. 20 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGATCC.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTCA.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................ACCGCTTGATGTACTACTTTAG................................................... 22 1 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAC............................................................................................... 19 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAACTGGTCG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTGTCCATTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 0 1 0 1 0 0
..................................................TAATTAGTATCCATTAAAGGGTCC.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAATTAGTATCCATTAAAGGTTCG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................GAAGTAGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0
.................................................TGAAGTAGTATCCATTAAAGGGT............................................................................................ 23 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCAATTAAAGGGTCG.......................................................................................... 24 1 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTAATATCCATTAAAGGGTCG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGGGC............................................................................................ 22 2 1 2.00 2 0 2 0 0 0 0
...................................................AAGTAGTATCCATTAAAGGGTC........................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTATAGGGTCG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGT............................................................................................ 22 2 1 2.00 2 0 2 0 0 0 0
...................................................AAGTAGTATCCATTAAAGGG............................................................................................. 20 0 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGTTCG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCCTTAAAGGGTCG.......................................................................................... 24 1 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGTCT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACGGGTCC.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGGTC........................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGCTCC.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGC.............................................................................................. 20 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGTCC.......................................................................................... 24 2 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGAC........................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0
.................................................CTAAGTAGTATCCATTAAAGGGTC........................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0
.................................................TTAAGTAGTATCCATTAAAGGG............................................................................................. 22 0 1 2.00 2 0 2 0 0 0 0
..................................................TAATTAGTATCCATTAAAGTGTCG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTGG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAATTAGTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 1 1 0 0 0 0
..................................................TAAGCAGCATCCATTAAAGGCTCG.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...................................................AAGTAGTATCCATTAAGAGGTCG.......................................................................................... 23 2 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTAGTATCCTTTCAAGGGTCG.......................................................................................... 24 2 1 2.00 2 1 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAAAGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATGCATTAAAGGGTCG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATACATTAAAGGGTCG.......................................................................................... 24 1 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTGGTATCCATTAAAGG.............................................................................................. 20 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCTTTAAAGGGTCG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCCTTAAAGGGTC........................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGACG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGTC........................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTGGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................AAAGTAGTATCCATTAAAGG.............................................................................................. 20 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGTTT.......................................................................................... 24 3 2 1.50 3 3 0 0 0 0 0
...........................................................................................ATCGTTTGATGTACTACTTTAG................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGAGCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCTTTAATGGGTCT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.................................................TGAAGTAGTATCCATTAAAGG.............................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................ACCGTTTGATGTACTACTTTAC................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TGAGTAGAATCCATTAAAGGGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGGAGTATCCATGAAAGGGGCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAATGGGTTG.......................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0
..................................................TAAGTAGGATCCATTACAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACCGTTTGATGTACTACTTTAGT.................................................. 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTGTCCTTTAAAGGGGCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAACTGTCGC......................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAAGGGTCT.......................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTCTCCATTAACGGGTCT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTATTATCCATTAAATGGTCT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCACTAAAGGGTCG.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...................................................AAGTAGCATCCATTAAAGGGTCT.......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGGGG............................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGACG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAATGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGAGTCT.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGAAGTATCCATTAAATGGTCT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGGTCC.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTAACCATTAAAGGGTCG.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAAGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCAATTAAAGGTACG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAGAGGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTTATGGTTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTAAAGGGTC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAACGGCCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...................................................AAGTAGTATCCATTAAGAGGTCGT......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGCAGTATCCATTAAAGCGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................TTATGTAGTATCCATTAAAGGGTC........................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................ATCGTTTGATGTACTACTTTAGA.................................................. 23 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGTTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGAGTCC.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGATCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTACCCATTCAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TGAGTAGTATCCGTTAAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TAACTAGTATCCATTAAAGGCCCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.....................................................CTAGTATCCATTAAAGGGTCG.......................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCAATTAACGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TATGTATTATCCATTAAACGGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAAGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTCG............................................................................................ 22 3 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGTTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAGGGTCT.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGGGTCTC......................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
..................................................GACGTAGTATCCATTAAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCCTTAAAGTGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
............................................................................................CCGCTTGATGTACTACTTTAGC.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGCAGTATCCATTAAAGGCTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TGGGTAGTATCCATTAAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGCATCCATTAAGAGGTC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAACGCTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAGAGGGTCG.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTCA.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TATGTAGGATCCATTAAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCTTTTAAGGGGCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GAAGTAGTATCCATTGAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................CAAGTAGTATCCATTAAAGGCTCC.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACGGGTGG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTGGTATCCGTTAAAGGGGCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACGGGTA........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCAGTTAAGGGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTATAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTCTCCATTAAAGTGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GAAGTAGTCTCCATTCAAGGGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TACGTAGAATCCATTAAAGGGTCG.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................TTAGTAGTATCCATTAAAGGGTC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGAAGTATCCATTAAAGGTCCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGGTCT.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGCAGTATCCATTAAGAGGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................CAAGTAGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAACGTCA.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTAAAGG.............................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCAGTGAAAGGGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCGTTAAAGGGTGG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAGGGTCC.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTCTCCATTCAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTACTATCCATTAAAAGCTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTGAAGGGTCG.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTTGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGGATCCATTAACGGGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTC.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGT............................................................................................ 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................CCGTTTGATGTACTACTTTAGT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TGAGTACTATCCATTAAAGGGGCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGGTTG.......................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................CGTTTGATGTACTACTTTAG................................................... 20 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................AGCGTTTGATGTACTACTTTAG................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGGAGTATCCATTAACGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCATCAAACGGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTACCGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AGCGTTTGATGTACTACTTTAGT.................................................. 23 2 1 1.00 1 0 1 0 0 0 0
..................................................TAGGTAGTATCCGTGAAAGGGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGGGA............................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0
..................................................TGAGGAGTATCCATTAAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TATGTAGTATCCATTGAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGCTTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTAAAGGGGCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTTGAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAATATCCATTAAAGGGTCT.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGCAGTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................TAATTAGTATCCATTAACGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
................................................TCTAAGTAGTATCCATTAAAGGGTC........................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................ACAGTTTGATGTACTACTTTAGT.................................................. 23 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTACCCATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCTTTAAAGGGTCT.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTGCTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTAACCATTAAAATGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTATTATCCATTAAACGGTC........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGGCCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTCTAGGT............................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTGC......................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTACATTGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
......................................................TAGTATCCATTAAAGGGTCG.......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTGT......................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
..................................................CAAGTACTATCCATTAAAGGGC............................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAACCGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................CAAGAAGTATCCATTAACGGGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCACTAAAGTGTCC.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATACATTAAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................CTATGTAGTATCCATTAAAGG.............................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTCACGGGTCC.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAGAGGGTC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGGATACATTAAAGGGTCA.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGCAGTATCCCTTAAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCTGTGAAAGGGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGTCC.......................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTG........................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0
..................................................TAAGTAGTATCCATGAAAGGGTCT.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGAATCCATTAAAGTGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTCAAGGGGCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATCCAGTAAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTATGATCCATTAAAGGGTCT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TACGTAGTATCCATTAAAGGGGCT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCATTCAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCCGTTTGATGTACTACTTTAG................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGCTTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TCAGAAGTATCCATTAAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGCC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTCTCCATTCAAGCGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTCGTATCCATTCAAGTGTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTACTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAACTGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACGTGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAACGGTCC.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAGCGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
...................................................AAGTAGTATCCATTAAGAGGTCGC......................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGTGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGGC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGAAGTATCCATTAAAGTGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTGTCCATTAAAGGGTCG.......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGAAGTAGCCATTAAAGGGCCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCAATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0
..................................................TAAGTAGTATCCATTAAGAGTTCG.......................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCAGTAAAGGGGCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTTTCCATTAAAGGGTCG.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGGCG.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTATTATCCATTAAAGGATCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCCTTCAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAGGGACG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTACTTTCCATTAAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TACGTAGTATCCATTAAAGGGTTT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTACTATCCATTCAAGGGTCG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGAATCCATTAAAGGGTCG.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
....................................................AGTAGTATCCATTAAAGG.............................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0

Anti-sense strand reads

TCACAAGTGAACACCTTTTCTCCAACTTAGGATTTAATACCGTCAAAGGAATTCATCATAGGTAATTTCCCAGCAATTATATAAGTTTCACTGGCAAACTACATGATGAAATCCATCGAGGTAAATTTCAGCCGATTTTATTCAAAGTTCGTAAAGTTCGGTTT

************************************..((((.((((.(((.((((((((..(((((((.(((((((...........))))))).))))))))))))))).))).)))))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V039

embryo

 V055

head

 V106

head
........................................................................GCGATTATACAAGTTTCA.......................................................................... 18 2 5 0.20 1 1 0 0
.................................................................................TAAGTGTCACTGGGAAA.................................................................. 17 2 18 0.06 1 0 1 0
................................................GAATGCACGATAGGTAAT.................................................................................................. 18 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_12943:1815517-1815680 - dan_28 confident AGTGTTCACT-------------------------------------------TGTGG----------AAAAGAG-----GTTGAATC------CTA---------------AATTATGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATATATT------CAAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTTAAAGTCGGCTAA--------------A----------ATA--A---------------GTT-TC----AAGCATTTCAAGCCAAA
droBip1 scf7180000396728:1424172-1424335 + AGTATTCACT-------------------------------------------TTTGG----------AGGAAAG-----TTTGAACC------CCA---------------GGTGATGGCAGTTTCTTTAAGTAGTATCCATTAAAGGGTCGTTAACATATTT-----AAAATTGACCATTTAATGTACTACTTTGAGTAACTCCATATAAAGTCGTCCAA----------G---TTGAAAATA-------T-----CTT----CCAAAC------------------AATATT
droKik1 scf7180000302236:231962-232138 + AAC-------------------------------------------T------TGTGA---------GTGACATAGT-----GAAGTCCAAGTGCTA-------ATCT---TCGGTATTGCAGTCTCTCTAAGTAGTATCCATTAAAGAGTCGTGATTATATT------CAAATCGACCTTGTGGTTTACTACCTTAAGAAACTTCAGTTTATTCCGGCTTT-C-A------------TATA--GAAT------------------CACTA-TC----TTGAATTCCTGACCTAA
droFic1 scf7180000448796:148-315 + AGT-------------------------------------------A------CGTGAAGAAAACAAGTCAAATTAAGAAC-TTTACT------CAA--------------CAAATACTGCAGATTCCTTAAGTAGTAACCATTAAAGGGTTGTTAATCAGAT------AAATCCAACCTTATGGTATACTACTTTAAGAAACTCTAGTTATACAGAACACT-A----------------------------TAATAAAAGAAAA---GT-------------------GTTATA
droEle1 scf7180000491338:1357109-1357272 - AGT-------------------------------------------T------AG-------------TGAAGTGAT-----TGAGTG------CAAAGAATAGTTTACCATTAGAACTGCAGCTTCCTTAAGTAGTAACCATTAAAGGGTTGTCAAAATAAT------TGAACCAACCATTTAATGTACTACTTTAAGAAACTCCAGACCATGCCAGTGTT-T-A--------------AAATA-------C-----AAT------AAAA------------------GATTAT
droRho1 scf7180000780107:332497-332622 + TAA---------------------------------------------------------------------------------------------------------------ATTCTGCAGCTTCTTTAAGTAGTAACCATTAAAGGGTTGTTATAAAAAT------TGAGCCAACCATTTAATGTACTACTTTAATAATCTCCAGACAATGTCGCCGTT-T-A--------------AAGTA-------G-----ATT------AATA------------------ACTAAA
droBia1 scf7180000302408:2583421-2583560 + AAA-------------------------------------------T-----------------------------------TAAGTG------CAA---------------ATTTCTTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTCATTATAAT------AAAATCAACCGTTTGATGTACTACTTTAAGAAACTGCAGTCCATTTCTTCATT-TTAAAGTAATAGAA----------CA-------------------AT--------------------TTCAA
droTak1 scf7180000414072:20185-20321 + AAT-------------------------------------------A---------------------------G-----TTTGAGTC------CAA---------------ATTTATTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTTATTATAAT------AAAACCAACCGTTTGATGTACTACTTCAAGAAACTCCAGTCCTCTTTTACATT-TATTAGTAAA---T--------------------------------------------------TGG--AAA
droEug1 scf7180000409452:319716-319835 - AAA----------------------------------------------------------------------------------------------------------------TATTGCGGATTCTTTAAGTAGTAACCATTAAAGGGTTGTTCCTATAAG------ATAATCAACCTTTTGATGTACTACTTTAAGAAGCTGTAGTCGAATTCAACATT-A-T------------TATA-T-------ACA-----------------------------------AATTAA
dm3 chr2L:13747717-13747927 - dme-mir-968 Known_mirbase GAGATTTGCCTATAAATTACAGGCGTATTCTTCAGCGTCAATCAGTTTGTAATAGT---------AAGTGAAACCAA-----TGAGTT------CAAAGAA-AAATTGT-----TGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCAACACATAAGTAGTGA-------------------------------TA---AT-------------------GCAAGA
droSim2 2l:13334269-13334452 - dsi-mir-968 Known_mirbase AGT-------------------------------------------TTGCAATAGT---------AAGTGAAATAAT-----TGAGTT------CAAAGAAAAAATTGT-----TCATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACATT-AAATAGTGA-------------------------------TA-T-ATGTCA----GAGTATTGTCGGAATAA
droSec2 scaffold_3:14566-14749 - dse_5 confident AGT-------------------------------------------TTGCAATAGT---------AAGTGAAATAAT-----TGAGTT------CAAAGAAAAAATTGT-----TCATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACATT-AAATAGTGA-------------------------------TA-T-ATGTCA----GAGTATTGTCGGAATAA
droYak3 2L:10160065-10160168 - dya_16 confident GGA-------------------------------------------A-------------------------------------------------------AAGTGTT-----TGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------AAGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTCAAA----------------------------------------------------------------------------------
droEre2 scaffold_4929:11718915-11719025 + der_23 confident A--------------------------------------------------------------------------------------------------------------------TGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------TGAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTCAAAGTCAACAAT-AATTAG-------------------------------------------------------------TTCTA
dp5 4_group1:1722768-1722905 + dps-mir-968 Known_mirbase GAA-------------------------------------------T------AGTG-----------------A-----T-TTAGTT------CTA--------------CAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTCAAAGTCAACAGA--------------A----------CTGTGCG-----------------------------------ATTAGA
droPer2 scaffold_5:3483588-3483724 - dpe_27 confident GAA-------------------------------------------T------AGTG-----------------A-----T-TTAGTT------CCA--------------CAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAGC-ACAGTCGAAGTCAACAGA--------------A----------CTGTGCG-----------------------------------ATTAGA
droWil2 scf2_1100000004585:545311-545432 + dwi_11 confident -----------------------------------------------------------------------------------------------------------------------GCAGATTCTTTAAGTAGTAACCTTTAAAGGGTCGTTTGTCCAATTCTTTTAAAGTCGATCCTTTAAGTTACTACTTGCAGAATGTGTTTCTGAAATCAACAAA--------------T----------ATA--GA------------------------AAGTATT----GAAAAA
droVir3 scaffold_12723:5043990-5044130 - dvi-mir-968 Known_mirbase AAT-------------------------------------------T----------------------------------------------------------------------ATACATGTGCCTTAAGTAGTAACCATTAAGAGGTTGTTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATGACAAATGCATAGCAAATCAGCAAA--------------TCGATAAGA-------C-----AAA----CTAAAA-AATTTAAATCATT----GCTAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AGTGTTCACT-------------------------------------------TGTGG----------AAAAGAG-----GTTGAATC------CTA---------------AATTATGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATATATT------CAAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTTAAAGTCGGCTAA--------------A----------ATA--A---------------GTT-TC----AAGCATTTCAAGCCAAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTCG..............................................................................................................................................2412167.00216734691629111441
.................................................................................................................................TAAGTAGTATCCATTAAAGG..................................................................................................................................................201243.00243023310000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................231201.00201015942000
................................................................................................................................................................................ACCGTTTGATGTACTACTTTAG.................................................................................................22161.00610538000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGT................................................................................................................................................22150.00500409001
.................................................................................................................................TAAGTAGTATCCATTAAAG...................................................................................................................................................19149.00490409000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTCT..............................................................................................................................................24134.00340133000
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................24127.00270261000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTCC..............................................................................................................................................24124.00240519000
.................................................................................................................................TAAGTAGTATCCATTAAAGGG.................................................................................................................................................21121.00210201000
.................................................................................................................................................................................CCGTTTGATGTACTACTTTAGG................................................................................................2219.009063000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................2419.009007002
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................2318.008116000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTCGC.............................................................................................................................................2517.007043000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTCGT.............................................................................................................................................2516.006042000
...................................................................................................................................AGTAGTATCCATTAAAGGGTCG..............................................................................................................................................2216.006024000
................................................................................................................................TTAAGTAGTATCCATTAAAGGGT................................................................................................................................................2316.006051000
................................................................................................................................TTAAGTAGTATCCATTAAAGG..................................................................................................................................................2115.005050000
................................................................................................................................................................................ACCGTTTGATGTACTACTTTA..................................................................................................2114.004040000
.................................................................................................................................TAAGTAGTATCCATTAAA....................................................................................................................................................1814.004013000
..................................................................................................................................AAGTAGTATCCATTAAAGGGTCG..............................................................................................................................................2314.004022000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGC................................................................................................................................................2213.003030000
................................................................................................................................................................................ACCGTTTGATGTACTACC.....................................................................................................1812.002020000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTCA..............................................................................................................................................2412.002002000
.................................................................................................................................TAAGTAGTATCCATTAAAC...................................................................................................................................................1912.002020000
..................................................................................................................................AAGTAGTATCCATTAAAGGGTC...............................................................................................................................................2212.002020000
..................................................................................................................................AAGTAGTATCCATTAAAGGG.................................................................................................................................................2012.002020000
.................................................................................................................................TAAGTAGTATCCATTAAAGC..................................................................................................................................................2012.002020000
................................................................................................................................TTAAGTAGTATCCATTAAAGGG.................................................................................................................................................2212.002020000
................................................................................................................................................................................ACCGTTTGATGTACTACTTTAC.................................................................................................2211.001010000
................................................................................................................................................................................ACCGTTTGATGTACTACTTTAGT................................................................................................2311.001010000
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTCT..............................................................................................................................................2511.001010000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTG...............................................................................................................................................2311.001001000
.................................................................................................................................TAAGTAGTATCCATTAAAGTCG................................................................................................................................................2211.001010000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................2411.001001000
.................................................................................................................................................................................CCGTTTGATGTACTACTTTAGT................................................................................................2211.001010000
..................................................................................................................................................................................CGTTTGATGTACTACTTTAG.................................................................................................2011.001010000
.....................................................................................................................................TAGTATCCATTAAAGGGTCG..............................................................................................................................................2011.001001000
...................................................................................................................................AGTAGTATCCATTAAAGG..................................................................................................................................................1811.001010000
droBip1
AGTATTCACT-------------------------------------------TTTGG----------AGGAAAG-----TTTGAACC------CCA---------------GGTGATGGCAGTTTCTTTAAGTAGTATCCATTAAAGGGTCGTTAACATATTT-----AAAATTGACCATTTAATGTACTACTTTGAGTAACTCCATATAAAGTCGTCCAA----------G---TTGAAAATA-------T-----CTT----CCAAAC------------------AATATTSizeHit CountTotal NormTotal
No Reads
droKik1
AAC-------------------------------------------T------TGTGA---------GTGACATAGT-----GAAGTCCAAGTGCTA-------ATCT---TCGGTATTGCAGTCTCTCTAAGTAGTATCCATTAAAGAGTCGTGATTATATT------CAAATCGACCTTGTGGTTTACTACCTTAAGAAACTTCAGTTTATTCCGGCTTT-C-A------------TATA--GAAT------------------CACTA-TC----TTGAATTCCTGACCTAASizeHit CountTotal NormTotal
No Reads
droFic1
AGT-------------------------------------------A------CGTGAAGAAAACAAGTCAAATTAAGAAC-TTTACT------CAA--------------CAAATACTGCAGATTCCTTAAGTAGTAACCATTAAAGGGTTGTTAATCAGAT------AAATCCAACCTTATGGTATACTACTTTAAGAAACTCTAGTTATACAGAACACT-A----------------------------TAATAAAAGAAAA---GT-------------------GTTATASizeHit CountTotal NormTotal
No Reads
droEle1
AGT-------------------------------------------T------AG-------------TGAAGTGAT-----TGAGTG------CAAAGAATAGTTTACCATTAGAACTGCAGCTTCCTTAAGTAGTAACCATTAAAGGGTTGTCAAAATAAT------TGAACCAACCATTTAATGTACTACTTTAAGAAACTCCAGACCATGCCAGTGTT-T-A--------------AAATA-------C-----AAT------AAAA------------------GATTATSizeHit CountTotal NormTotal
No Reads
droRho1
TAA---------------------------------------------------------------------------------------------------------------ATTCTGCAGCTTCTTTAAGTAGTAACCATTAAAGGGTTGTTATAAAAAT------TGAGCCAACCATTTAATGTACTACTTTAATAATCTCCAGACAATGTCGCCGTT-T-A--------------AAGTA-------G-----ATT------AATA------------------ACTAAASizeHit CountTotal NormTotal
No Reads
droBia1
AAA-------------------------------------------T-----------------------------------TAAGTG------CAA---------------ATTTCTTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTCATTATAAT------AAAATCAACCGTTTGATGTACTACTTTAAGAAACTGCAGTCCATTTCTTCATT-TTAAAGTAATAGAA----------CA-------------------AT--------------------TTCAASizeHit CountTotal NormTotal
No Reads
droTak1
AAT-------------------------------------------A---------------------------G-----TTTGAGTC------CAA---------------ATTTATTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTTATTATAAT------AAAACCAACCGTTTGATGTACTACTTCAAGAAACTCCAGTCCTCTTTTACATT-TATTAGTAAA---T--------------------------------------------------TGG--AAASizeHit CountTotal NormTotal
No Reads
droEug1
AAA----------------------------------------------------------------------------------------------------------------TATTGCGGATTCTTTAAGTAGTAACCATTAAAGGGTTGTTCCTATAAG------ATAATCAACCTTTTGATGTACTACTTTAAGAAGCTGTAGTCGAATTCAACATT-A-T------------TATA-T-------ACA-----------------------------------AATTAASizeHit CountTotal NormTotal
No Reads
dm3
GAGATTTGCCTATAAATTACAGGCGTATTCTTCAGCGTCAATCAGTTTGTAATAGT---------AAGTGAAACCAA-----TGAGTT------CAAAGAA-AAATTGT-----TGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCAACACATAAGTAGTGA-------------------------------TA---AT-------------------GCAAGASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................241209122.0020912200000001522800000000000000061000000012120031002051100011120001000000000000000000000000055363523350002040052054210000060000247105027013010025030100000001000554644408833632416041411977320000000000029080081607010100003050002000002610000023003100100138213031505208030003200001664679564040301212656920001441105124121047153426483021401021274011011220159292471401088526443925009011714110325101013457314416123141882930021000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................2314655.0046550000000000000000000000000010000210000000101030000000000000000000000000000000000003114000000000000000000000000005000000000000000000000000000191892392410000001010000000000010100020001002000000000000020000000000000000001010300001112600100000217102110010010531000001500001000031510723000000037000103351179359910310000102000211200000422000160121970000200
................................................................................................................................................................................ACCTTTTGATGTACTACTTTAA.................................................................................................2212239.002239000010122225000000000000000000000000100000000000000000000030000000000000000000000011744069476790020100010005110300000000016880054000000000000000000000000500260000000000000000000000010000000000000000000000000000000000000000000000000000000400100100001890000000000000000200000000000000000000000000000000565000000000000000000000000100000000000000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGT.............................................................................................................................................2511719.00171900000000100000000000000000000000001000000000000000000000000000000000000000000000012241000000000100000000000000003500000000000000000000000000784280100000000000000000000010000000000000000000000000000014000000000000000001000000010760040000201116100000000400000010000100000400201500000001000000010190100501000000000000000000000600000104440000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGT................................................................................................................................................2211047.001047000000001000000000000000000000000060000000001000100000000000000000000000000000000001000000000000000000000000000200000000000000000000000000012343012000010000000000000000100000000020000000000000000000000000000000000000001000001033008000069510000000015000000100000000006001640000000000000000098667000000000000000010110001300000206730001010
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................241676.0067600000000010000000000000000000000000000000000000000001000000000000000000000000000022000000000000000000000000000000000000000000000000000000003329100000010000000000000000000000000000000000020000000000000000000000000100000000001002000000020175000000000910000010000000000100273000000000000000007322700100000000000000000000300000002210000000
...................................................................................................................................AGTAGTATCCATTAAAGGGTTG..............................................................................................................................................221541.0054100000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000002000000000000000000000000000012010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000533100000000020000001000000000000021000000000000000001842100100000000000000000000000000000010000000
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................241472.00472000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007600000000010000000000000000000000000000000000000005439410000000000000000000000000000000200000000
................................................................................................................................................................................ACCTTTTGATGTACTACTTTA..................................................................................................211436.00436000000004300000000000000000000000020000000000000000000000010000000000000000000000251150143400000000200010030000020003511080000000000000000000000002030100000000000000000000000000000000000000000000000000000000000000000000000000000010020000000530000000000000000000000000000000000000000000000000131100000000000000000000000000000000000000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGA.............................................................................................................................................251372.003720000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000027003000000000000000000000000000000000000000000000000000000000000000000000001000001011000000029130000000108000000000000000011006600000011000000000926700200000001000000000000600000000020000000
.................................................................................................................................TAAGTAGTATCCATTAAAGG..................................................................................................................................................201307.00307000000000000000000000000000000000061000000000000000000000000000000000000000000000000610000000000000000000000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000001000000000000000000000422510000000000000000000000100000000000000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGG.................................................................................................................................................211292.00292000000000100000000000000000000000057000000000000000000000000000000000000000000000020420000000000001000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000010100040000770000000002000000000000000000000100000000000000000719200000000000000000000000000000000010000000
..................................................................................................................................AAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................231266.00266000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001160000000000000000000000100000010000000000000000000000000000000000000000000000000000000000006400000000010000001000000000000031000000000000000004419400000000000000000000000000000000100000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................241198.0019800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000171200000000000000000000000000000010000000000000000014011900000000000000000000000000000000100000000
.................................................................................................................................TAAGTAGTATCCATTAAAG...................................................................................................................................................191162.0016200000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000370000000000000000000000000000000000000000000000000214400000000000000000000000000000000000000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGC.............................................................................................................................................251151.00151000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021108100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000169001000000000000010000000000000100100000000000000019800000000000000000000000000000000000000000
.................................................................................................................................TAAGTAGTATCCATTAAA....................................................................................................................................................181127.0012700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000001000000000000000000012300000000000000000000000000000000000000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTA..............................................................................................................................................24197.0097000000001100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001230000000002100000000000000001000000000000000000000145500000000000000000000000100010000000000000
.....................................................................................................................................TAGTATCCATTAAAGGGTTG..............................................................................................................................................20151.005100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124000000000000000000000000000000000000000000000000042800000000000000000000000000000000000000000
................................................................................................................................................................................ACCTTTTGATGTACTACTTTAAA................................................................................................23147.00470000000000000000000000000000000000000000000000000000000000000000000000000000000003230400000000010000010000000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................CCTTTTGATGTACTACTTTAA.................................................................................................21130.00300000001001000000000000000000000000000000000000000000000000000000000000000000000002031300000000000000000000000000810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................AACCTTTTGATGTACTACTTTAA.................................................................................................23125.00250000000001000000000000000000000000000000000000000000000000000000000000000000000003041000000000000000000000000000330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGTT............................................................................................................................................26125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000010000000000000100000000000000000031200000000000000000000000100000000000000000
....................................................................................................................................GTAGTATCCATTAAAGGGTTG..............................................................................................................................................21124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000011900000000000000000000000000000000000000000
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................25121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000
...................................................................................................................................AGTAGTATCCATTAAAGGGTT...............................................................................................................................................21120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
......................................................................................................................................AGTATCCATTAAAGGGTTG..............................................................................................................................................19116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004300000000000000000000000000000000000000000000000000800000000000000000000000000000000000000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTCT..............................................................................................................................................24115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000031000000000000000000000000000000000000000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGTA............................................................................................................................................26115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020400100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001600000000000000000000000000000000000000000
.......................................................................................................................................GTATCCATTAAAGGGTTG..............................................................................................................................................18111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000002400000000000000000000000000000000000000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................23111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
...............................................................................................................................................................................AACCTTTTGATGTACTACTTTA..................................................................................................22110.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................ACCTTTTGATGTACTACTTTAAC................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001600000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TTAAGTAGTATCCATTAAAGGGT................................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002800000000000000000000000000000000000000000
..................................................................................................................................................................................CTTTTGATGTACTACTTTAA.................................................................................................20110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000050200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droSim2
AGT-------------------------------------------TTGCAATAGT---------AAGTGAAATAAT-----TGAGTT------CAAAGAAAAAATTGT-----TCATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACATT-AAATAGTGA-------------------------------TA-T-ATGTCA----GAGTATTGTCGGAATAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................24148314.00483142819224941610220233521222503900000
................................................................................................................................................................................ACCGTTTGATGTACTACTTTAG.................................................................................................2211621.0016211213092000000030700000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................231600.0060000332050096054500000
.................................................................................................................................................................................CCGTTTGATGTACTACTTTAGG................................................................................................221172.001720016700000000500000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................241161.001610051000000015500000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGT.............................................................................................................................................251119.0011900661000011703400000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGT................................................................................................................................................221113.001130046102007605100000
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................24186.0086001000000108400000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGA.............................................................................................................................................25174.007400510000221303300000
..............................................................................................................................................................................CAACCGTTTGATGTACTACTTT...................................................................................................22174.0074007300000000100000
................................................................................................................................................................................ACCGTTTGATGTACTACTTTA..................................................................................................21157.00571046000000001000000
.................................................................................................................................TAAGTAGTATCCATTAAAGG..................................................................................................................................................20154.00540022007003401800000
..................................................................................................................................AAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................23148.00480014900000002500000
................................................................................................................................................................................ACCGTTTGATGTACTACTTTAGA................................................................................................23143.00430031000000001200000
.................................................................................................................................TAAGTAGTATCCATTAAAG...................................................................................................................................................19131.00310011001200030500000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTA..............................................................................................................................................24130.00300013000001001600000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGC.............................................................................................................................................25125.0025006000000001900000
.................................................................................................................................TAAGTAGTATCCATTAAAGGG.................................................................................................................................................21123.002300500700210800000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................24120.0020004000000001600000
...................................................................................................................................AGTAGTATCCATTAAAGGGTTG..............................................................................................................................................22120.0020001310000000600000
.................................................................................................................................................................................CCGTTTGATGTACTACTTTAG.................................................................................................21119.0019001600000000300000
...............................................................................................................................................................................AACCGTTTGATGTACTACTTTAG.................................................................................................23119.0019001600000000300000
................................................................................................................................................................................ACCGTTTGATGTACTACTTTAGC................................................................................................23118.0018001700000000100000
.................................................................................................................................TAAGTAGTATCCATTAAA....................................................................................................................................................18117.0017002001300100100000
..............................................................................................................................................................................CAACCGTTTGATGTACTACTTTAG.................................................................................................24111.0011001100000000000000
.................................................................................................................................................................................CCGTTTGATGTACTACTTTAGT................................................................................................2219.00900700000000200000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGG.............................................................................................................................................2517.00700600000000100000
.................................................................................................................................................................................CCGTTTGATGTACTACTTTAGA................................................................................................2217.00700700000000000000
.....................................................................................................................................TAGTATCCATTAAAGGGTTG..............................................................................................................................................2017.00700500000000200000
................................................................................................................................TTAAGTAGTATCCATTAAAGGGT................................................................................................................................................2316.00600200000000400000
................................................................................................................................................................................ACCGTTTGATGTACTACTTTAT.................................................................................................2216.00600100000000500000
......................................................................................................................................AGTATCCATTAAAGGGTTG..............................................................................................................................................1915.00500200000000300000
.................................................................................................................................................................................CCGTTTGATGTACTACTTTAGGT...............................................................................................2315.00500300000000200000
................................................................................................................................................................................ACCGTTTGATGTACTACTTTAA.................................................................................................2214.00400200000200000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGG................................................................................................................................................2214.00400300000000100000
................................................................................................................................................................................ACCGTTTGATGTACTACTTT...................................................................................................2014.00400300000000100000
................................................................................................................................................................................ACCGTTTGATGTACTACTTTAC.................................................................................................2214.00400400000000000000
.......................................................................................................................................GTATCCATTAAAGGGTTG..............................................................................................................................................1814.00400300000000100000
.................................................................................................................................................................................CCGTTTGATGTACTACTT....................................................................................................1813.00300300000000000000
...................................................................................................................................................................................GTTTGATGTACTACTTTAG.................................................................................................1913.00300300000000000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGTA............................................................................................................................................2613.00300000000000300000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTCT..............................................................................................................................................2413.00300000000000300000
.................................................................................................................................................................................CCGTTTGATGTACTACTTTAGC................................................................................................2213.00300300000000000000
...........................................................................................................................................................................AATCAACCGTTTGATGTACTACT.....................................................................................................2312.00200200000000000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGGCT..............................................................................................................................................2412.00200000000000200000
................................................................................................................................................................................ACCGTTTGATGTACTACTTTAGG................................................................................................2312.00200200000000000000
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................2512.00200100000000100000
.................................................................................................................................................................................CCGTTTGATGTACTACTTTAGGC...............................................................................................2312.00200200000000000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTG...............................................................................................................................................2312.00200100000000100000
droSec2
AGT-------------------------------------------TTGCAATAGT---------AAGTGAAATAAT-----TGAGTT------CAAAGAAAAAATTGT-----TCATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACATT-AAATAGTGA-------------------------------TA-T-ATGTCA----GAGTATTGTCGGAATAASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................241129769.001297691346129123506
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................2312934.00293432291415
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................241683.00683106793
.................................................................................................................................TAAGTAGTATCCATTAAAGGGT................................................................................................................................................221430.00430014263
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGT.............................................................................................................................................251409.00409104062
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGA.............................................................................................................................................251351.00351003510
.................................................................................................................................TAAGTAGTATCCATTAAAGG..................................................................................................................................................201138.00138001380
..................................................................................................................................AAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................231125.001251101131
.................................................................................................................................TAAGTAGTATCCATTAAAGGG.................................................................................................................................................211116.00116001160
................................................................................................................................................................................ACCGTTTGATGTACTACTTTAG.................................................................................................221108.00108101070
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGC.............................................................................................................................................25198.009800980
...................................................................................................................................AGTAGTATCCATTAAAGGGTTG..............................................................................................................................................22185.008500850
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTA..............................................................................................................................................24173.007310711
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................24145.004510440
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................24142.004200420
.....................................................................................................................................TAGTATCCATTAAAGGGTTG..............................................................................................................................................20135.003510340
.................................................................................................................................TAAGTAGTATCCATTAAAG...................................................................................................................................................19131.003100310
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTTG.............................................................................................................................................25130.003000300
................................................................................................................................TTAAGTAGTATCCATTAAAGGGT................................................................................................................................................23118.001800180
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................25118.001800180
................................................................................................................................................................................ACCGTTTGATGTACTACTTTA..................................................................................................21111.001110100
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGTA............................................................................................................................................26110.00100190
....................................................................................................................................GTAGTATCCATTAAAGGGTTG..............................................................................................................................................2119.0091080
...................................................................................................................................AGTAGTATCCATTAAAGGGTT...............................................................................................................................................2118.0080080
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................2317.0070070
.................................................................................................................................................................................CCGTTTGATGTACTACTTTAGG................................................................................................2217.0070070
.................................................................................................................................TAAGTAGTATCCATTAAA....................................................................................................................................................1817.0070070
.........................................................................................................................................................TTCTCAACATG-----CAAATCA.......................................................................................................................1815.0050050
.......................................................................................................................................GTATCCATTAAAGGGTTG..............................................................................................................................................1814.0040040
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGG.............................................................................................................................................2514.0040040
................................................................................................................................................................................ACCGTTTGATGTACTACTTTAGT................................................................................................2313.0030030
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGAA............................................................................................................................................2613.0030030
...................................................................................................................................AGTAGTATCCATTAAAGGGTTGT.............................................................................................................................................2313.0030030
................................................................................................................................................................................ACCGTTTGATGTACTACTTAG..................................................................................................2112.0020020
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGTT............................................................................................................................................2612.0020020
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................2512.0020020
................................................................................................................................................................................ACCGTTTGATGTACTACTTTAGC................................................................................................2312.0020020
..............................................................................................................................................................................CAACCGTTTGATGTACTACTTT...................................................................................................2212.0020020
......................................................................................................................................AGTATCCATTAAAGGGTTG..............................................................................................................................................1912.0020020
...................................................................................................................................AGTAGTATCCATTAAAGGGTTGTT............................................................................................................................................2412.0020020
...................................................................................................................................AGTAGTATCCATTAAAGGGT................................................................................................................................................2012.0021010
..................................................................................................................................AAGTAGTATCCATTAAAGGGTT...............................................................................................................................................2212.0020020
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGACT...........................................................................................................................................2711.0010010
.....................................................................................................................................TAGTATCCATTAAAGGGTTA..............................................................................................................................................2011.0010010
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGAC............................................................................................................................................2611.0010010
.................................................................................................AGAAAAAATTGT-----TCATGGAAGCT..........................................................................................................................................................................2311.0010010
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTTGC............................................................................................................................................2611.0010010
droYak3
GGA-------------------------------------------A-------------------------------------------------------AAGTGTT-----TGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------AAGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTCAAA----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................24120896.0020896234563715169144000000
................................................................................................................................................................................ACCTTTTGATTTACTACTTTAG.................................................................................................221822.0082201796250000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................231416.00416011922201200000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGT................................................................................................................................................221173.0017300138350000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGT.............................................................................................................................................251116.001160196190000000
................................................................................................................................................................................ACCTTTTGATTTACTACTTTAGT................................................................................................231102.001020088140000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................24175.0075008651100000
.................................................................................................................................TAAGTAGTATCCATTAAAGG..................................................................................................................................................20144.0044004130000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGC.............................................................................................................................................25144.0044004040000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGC................................................................................................................................................22140.0040004000000000
................................................................................................................................................................................ACCTTTTGATTTACTACTTTAGC................................................................................................23128.0028002800000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGG.................................................................................................................................................21128.0028002260000000
................................................................................................................................................................................ACCTTTTGATTTACTACTTTAGA................................................................................................23120.0020002000000000
..................................................................................................................................AAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................23120.0020034130000000
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................24120.0020001370000000
................................................................................................................................................................................ACCTTTTGATTTACTACTTTA..................................................................................................21117.0017011600000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGA.............................................................................................................................................25117.0017001070000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTA..............................................................................................................................................24116.0016002140000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................23115.0015001500000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................24115.001500590100000
................................................................................................................................................................................ACCTTTTGATTTACTACTTTAC.................................................................................................22113.0013001300000000
.....................................................................................................................................TAGTATCCATTAAAGGGTTG..............................................................................................................................................20110.0010001000000000
................................................................................................................................................................................ACCTTTTGATTTACTACTT....................................................................................................1915.00500500000000
..................................................................................................................................................................................CTTTTGATTTACTACTTTAG.................................................................................................2014.00400310000000
...................................................................................................................................................................................TTTTGATTTACTACTTTAG.................................................................................................1914.00400400000000
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................2513.00300030000000
...................................................................................................................................AGTAGTATCCATTAAAGGGTTG..............................................................................................................................................2213.00300210000000
.................................................................................................................................TAAGTAGTATCCATTAAAG...................................................................................................................................................1913.00300200100000
......................................................................................................................................AGTATCCATTAAAGGGTTG..............................................................................................................................................1913.00300210000000
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................2413.00300300000000
.................................................................................................................................TAAGTAGTATCCATTAAAGTTG................................................................................................................................................2213.00300300000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTTG.............................................................................................................................................2513.00300300000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGTT............................................................................................................................................2612.00200200000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTG...............................................................................................................................................2312.00200110000000
...................................................................................................................................AGTAGTATCCATTAAAGG..................................................................................................................................................1812.00200200000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTAA..............................................................................................................................................2411.00100010000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTGT..............................................................................................................................................2411.00100010000000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGTGGT..........................................................................................................................................2811.00100100000000
droEre2
A--------------------------------------------------------------------------------------------------------------------TGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------TGAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTCAAAGTCAACAAT-AATTAG-------------------------------------------------------------TTCTASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................2419069.0090698974480768620180
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................241393.00393620385000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................231210.0021015260166120
................................................................................................................................................................................ACCGTTTAATGTACTACTTTAA.................................................................................................22198.00981049039000
..................................................................................................................................AAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................23185.008581004000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGT................................................................................................................................................22150.0050419026100
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................24123.002313019000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGT.............................................................................................................................................25122.00229508000
...................................................................................................................................AGTAGTATCCATTAAAGGGTTG..............................................................................................................................................22120.002070013000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................24118.001821015000
................................................................................................................................................................................ACCGTTTAATGTACTACTTTA..................................................................................................21116.001631201000
.................................................................................................................................TAAGTAGTATCCATTAAAGGG.................................................................................................................................................21114.00141508000
.................................................................................................................................TAAGTAGTATCCATTAAAGG..................................................................................................................................................20110.00100703000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTA..............................................................................................................................................2419.0090009000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGC.............................................................................................................................................2519.0090504000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTGA.............................................................................................................................................2516.0061104000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTCT..............................................................................................................................................2413.0030003000
......................................................................................................................................AGTATCCATTAAAGGGTTG..............................................................................................................................................1913.0030003000
................................................................................................................................TTAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................2513.0031002000
.................................................................................................................................TAAGTAGTATCCATTAAGA...................................................................................................................................................1932.3370403000
..................................................................................................................................AAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................2312.0022000000
................................................................................................................................................................................ACCGTTTAATGTACTACTTT...................................................................................................2012.0020200000
................................................................................................................................................................................ACCGTTTAATGTACTACTTTAAA................................................................................................2312.0020101000
.................................................................................................................................................................................CCGTTTAATGTACTACTTTAA.................................................................................................2112.0020200000
.....................................................................................................................................TAGTATCCATTAAAGGGTTG..............................................................................................................................................2012.0022000000
.................................................................................................................................TAAGTAGTATCCATTAAA....................................................................................................................................................1812.0020002000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTTTG.............................................................................................................................................2512.0021100000
.................................................................................................................................TAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................2312.0020200000
.................................................................................................................................TAAGTAGTATCCATTAAAG...................................................................................................................................................1912.0021100000
..................................................................................................................................AAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................2311.0011000000
dp5
GAA-------------------------------------------T------AGTG-----------------A-----T-TTAGTT------CTA--------------CAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTCAAAGTCAACAGA--------------A----------CTGTGCG-----------------------------------ATTAGASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCG..............................................................................................................................................24136575.0036575111696668028717812000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTC...............................................................................................................................................2412621.0026210422020055900000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTC...............................................................................................................................................2311361.0013610261054127820000
..................................................................................................................................AAGTAGTATCCATTAAGAGGTCG..............................................................................................................................................231814.008140126136055011000
..................................................................................................................................AAGTAGTATCCATTAAGAGGTCGT.............................................................................................................................................241504.00504011214027900000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCC..............................................................................................................................................241372.003720331005900000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGT................................................................................................................................................221316.003160924616000000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCGT.............................................................................................................................................251244.0024401213609600000
.................................................................................................................................TAAGTAGTATCCATTAAGAGG.................................................................................................................................................211191.0019101212805100000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGT................................................................................................................................................231177.001770213104400000
.................................................................................................................................TAAGTAGTATCCATTAAGAG..................................................................................................................................................201161.00161007408700000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTCC..............................................................................................................................................251150.001500113511300000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCT..............................................................................................................................................241102.00102002307900000
.................................................................................................................................TAAGTAGTATCCATTAAGA...................................................................................................................................................19196.0096015404100000
................................................................................................................................................................................ACCTTTTGATGTACTACTTTAAA................................................................................................23183.008306680900000
..................................................................................................................................AAGTAGTATCCATTAAGAGGTCGC.............................................................................................................................................24179.007905670700000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGC................................................................................................................................................22177.007700770000000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCGC.............................................................................................................................................25163.006300560700000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTCG..............................................................................................................................................25155.0055061003900000
................................................................................................................................................................................ACCTTTTGATGTACTACTTTAA.................................................................................................22153.0053063501200000
................................................................................................................................TTAAGTAGTATCCATTAAGAGG.................................................................................................................................................22153.0053033801200000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCA..............................................................................................................................................24143.004300603700000
...................................................................................................................................AGTAGTATCCATTAAGAGGTCG..............................................................................................................................................22131.003105302300000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTCT..............................................................................................................................................25128.002803170800000
................................................................................................................................................................................ACCTTTTGATGTACTACTTTA..................................................................................................21128.002801210600000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGC................................................................................................................................................23127.002700270000000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCCC.............................................................................................................................................25127.002700220500000
.....................................................................................................................................TAGTATCCATTAAGAGGTCG..............................................................................................................................................20122.002201201900000
..................................................................................................................................AAGTAGTATCCATTAAGAGGT................................................................................................................................................21120.0020001001000000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCGA.............................................................................................................................................25118.001800120600000
..................................................................................................................................AAGTAGTATCCATTAAGAGGTC...............................................................................................................................................22117.001701130300000
.................................................................................................................................................................................CCTTTTGATGTACTACTTTAAA................................................................................................22115.00150180600000
...............................................................................................................................................................................GACCTTTTGATGTACTACTTTA..................................................................................................22114.00140190400000
..................................................................................................................................AAGTAGTATCCATTAAGAGGTCGTT............................................................................................................................................25113.00130190300000
......................................................................................................................................AGTATCCATTAAGAGGTCG..............................................................................................................................................19113.001301101100000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTT...............................................................................................................................................24113.001300301000000
................................................................................................................................TTAAGTAGTATCCATTAAGA...................................................................................................................................................20113.00130080500000
.................................................................................................................................................................................CCTTTTGATGTACTACTTTAAAA...............................................................................................23111.001100100100000
....................................................................................................................................GTAGTATCCATTAAGAGGTCG..............................................................................................................................................21110.001000001000000
................................................................................................................................TTAAGTAGTATCCATTAAGAG..................................................................................................................................................2119.0090060300000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTT...............................................................................................................................................2319.0090070200000
................................................................................................................................................................................ACCTTTTGATGTACTACTTTAAAA...............................................................................................2418.0080080000000
...............................................................................................................................CTTAAGTAGTATCCATTAAGAGGTC...............................................................................................................................................2518.0080070100000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTA...............................................................................................................................................2317.0070010600000
..................................................................................................................................AAGTAGTATCCATTAAGAGGTCC..............................................................................................................................................2317.0070060100000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCGTT............................................................................................................................................2617.0070050200000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTCA..............................................................................................................................................2516.0060010500000
..................................................................................................................................AAGTAGTATCCATTAAGAGGTCGTC............................................................................................................................................2515.0050040100000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTAC..............................................................................................................................................2415.0050010400000
.................................................................................................................................TAAGTAGTATCCATTAAGAC..................................................................................................................................................2015.0050050000000
...............................................................................................................................CTTAAGTAGTATCCATTAAGAGGT................................................................................................................................................2415.0050030200000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCCA.............................................................................................................................................2514.0040000400000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCGCT............................................................................................................................................2614.0040030100000
...................................................................................................................................AGTAGTATCCATTAAGAGGTCGT.............................................................................................................................................2314.0040400000000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCGG.............................................................................................................................................2514.0040130000000
..................................................................................................................................AAGTAGTATCCATTAAGA...................................................................................................................................................1814.0040000400000
..................................................................................................................................AAGTAGTATCCATTAAGAGGTCCC.............................................................................................................................................2414.0040040000000
droPer2
GAA-------------------------------------------T------AGTG-----------------A-----T-TTAGTT------CCA--------------CAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAGC-ACAGTCGAAGTCAACAGA--------------A----------CTGTGCG-----------------------------------ATTAGASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCG..............................................................................................................................................2414936.00493612458458601671
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTC...............................................................................................................................................241232.00232129196060
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTC...............................................................................................................................................23146.004611228140
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTCG..............................................................................................................................................25122.00220019021
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCGC.............................................................................................................................................25118.00181214010
..................................................................................................................................AAGTAGTATCCATTAAGAGGTCG..............................................................................................................................................23118.00180315000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCGT.............................................................................................................................................25116.00165110000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGT................................................................................................................................................23116.0016608020
.................................................................................................................................................................................CCTTTTGATGTACTACTTTAAA................................................................................................22111.00111001000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCT..............................................................................................................................................2418.008006020
.................................................................................................................................TAAGTAGTATCCATTAAGAGG.................................................................................................................................................2117.007205000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCC..............................................................................................................................................2417.007006010
................................................................................................................................................................................ACCTTTTGATGTACTACTTTAA.................................................................................................2216.006105000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCA..............................................................................................................................................2416.006006000
.................................................................................................................................................................................CCTTTTGATGTACTACTTTAAAA...............................................................................................2315.005401000
.....................................................................................................................................TAGTATCCATTAAGAGGTCG..............................................................................................................................................2015.005013010
.................................................................................................................................TAAGTAGTATCCATTAAGAG..................................................................................................................................................2014.004004000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGT................................................................................................................................................2214.004202000
................................................................................................................................................................................ACCTTTTGATGTACTACT.....................................................................................................1813.003300000
...................................................................................................................................AGTAGTATCCATTAAGAGGTCG..............................................................................................................................................2212.002011000
................................................................................................................................................................................ACCTTTTGATGTACTACTTTA..................................................................................................2112.002002000
..................................................................................................................................AAGTAGTATCCATTAAGAGGTCGT.............................................................................................................................................2412.002101000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTCGA.............................................................................................................................................2512.002101000
...................................................................................................................................................................................TTTTGATGTACTACTTTA..................................................................................................1812.002200000
................................................................................................................................................................................ACCTTTTGATGTACTACTTTAAA................................................................................................2312.002200000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTCGC.............................................................................................................................................2612.002200000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTCC..............................................................................................................................................2512.002001010
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTT...............................................................................................................................................2411.001001000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTCA..............................................................................................................................................2511.001010000
................................................................................................................................TTAAGTAGTATCCATTAAGA...................................................................................................................................................2011.001001000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTA...............................................................................................................................................2411.001100000
................................................................................................................................TTAAGTAGTATCCATTAAGAGG.................................................................................................................................................2211.001001000
................................................................................................................................TTAAGTAGTATCCATTAAGAGT.................................................................................................................................................2211.001000001
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTA...............................................................................................................................................2311.001001000
..................................................................................................................................AAGTAGTATCCATTAAGAGG.................................................................................................................................................2011.001001000
.......................................................................................................................................GTATCCATTAAGAGGTCG..............................................................................................................................................1811.001001000
................................................................................................................................TTAAGTAGTATCCATTAAGAGGTCT..............................................................................................................................................2511.001001000
.................................................................................................................................TAAGTAGTATCCATTAAGAGGTAA..............................................................................................................................................2411.001001000
droWil2
-----------------------------------------------------------------------------------------------------------------------GCAGATTCTTTAAGTAGTAACCTTTAAAGGGTCGTTTGTCCAATTCTTTTAAAGTCGATCCTTTAAGTTACTACTTGCAGAATGTGTTTCTGAAATCAACAAA--------------T----------ATA--GA------------------------AAGTATT----GAAAAASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTCG..............................................................................................................................................241104798.001047980156010455191
..................................................................................................................................AAGTAGTAACCTTTAAAGGGTCGT.............................................................................................................................................241516.005160605100
..................................................................................................................................AAGTAGTAACCTTTAAAGGGTCG..............................................................................................................................................231370.0037001703530
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTCGT.............................................................................................................................................251355.003550203521
................................................................................................................................................................................ATCCTTTAAGTTACTACTTGCA.................................................................................................221330.003300803220
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTCT..............................................................................................................................................241251.002510002510
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTC...............................................................................................................................................231162.001620001620
................................................................................................................................TTAAGTAGTAACCTTTAAAGGGTC...............................................................................................................................................241103.001030001030
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTCA..............................................................................................................................................241102.001020001011
...................................................................................................................................AGTAGTAACCTTTAAAGGGTCG..............................................................................................................................................22196.0096000960
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTCC..............................................................................................................................................24179.0079000790
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTCGA.............................................................................................................................................25159.0059000590
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTCGC.............................................................................................................................................25141.0041000410
.................................................................................................................................TAAGTAGTAACCTTTAAAGGTCG...............................................................................................................................................23130.0030000300
...............................................................................................................................................................................GATCCTTTAAGTTACTACTTGC..................................................................................................22128.0028020260
..................................................................................................................................AAGTAGTAACCTTTAAAGGGTCGTT............................................................................................................................................25126.0026010250
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGT................................................................................................................................................22118.0018010170
..................................................................................................................................AAGTAGTAACCTTTAAAGGGTCGC.............................................................................................................................................24118.0018000180
.........................................................................................................................................................TTTGTCCAATTCTTTTAAAGTCG.......................................................................................................................23113.0013010120
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTCGTT............................................................................................................................................26111.0011000110
................................................................................................................................................................................ATCCTTTAAGTTACTACTTGC..................................................................................................21110.0010000100
................................................................................................................................TTAAGTAGTAACCTTTAAAGGGTCG..............................................................................................................................................25110.0010000100
.....................................................................................................................................TAGTAACCTTTAAAGGGTCG..............................................................................................................................................20110.0010000100
.................................................................................................................................TAAGTAGTAACCTTTAAAGG..................................................................................................................................................2017.00701060
................................................................................................................................................................................ATCCTTTAAGTTACTACTTGT..................................................................................................2117.00700070
.................................................................................................................................TAAGTAGTAACCTTTAAAGGG.................................................................................................................................................2116.00600060
..................................................................................................................................AAGTAGTAACCTTTAAAGGGT................................................................................................................................................2116.00600060
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTCGTA............................................................................................................................................2616.00600060
...................................................................................................................................AGTAGTAACCTTTAAAGGGTCGTT............................................................................................................................................2415.00501040
...................................................................................................................................AGTAGTAACCTTTAAAGGG.................................................................................................................................................1915.00500050
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTTCG.............................................................................................................................................2515.00500050
.................................................................................................................................TAAGTAGTAACCTTTAAAGTCG................................................................................................................................................2214.00400040
................................................................................................................................TTAAGTAGTAACCTTTAAAGGGT................................................................................................................................................2314.00400040
.................................................................................................................................TAAGTAGTAACCTTTAAAG...................................................................................................................................................1914.00400040
................................................................................................................................................................................ATCCTTTAAGTTACTACTTGCT.................................................................................................2214.00400040
....................................................................................................................................GTAGTAACCTTTAAAGGGTCG..............................................................................................................................................2114.00400040
...............................................................................................................................................................................GATCCTTTAAGTTACTACTTGT..................................................................................................2213.00300030
.................................................................................................................................................................................TCCTTTAAGTTACTACTTGCAG................................................................................................2213.00301020
................................................................................................................................TTAAGTAGTAACCTTTAAAGGGTCT..............................................................................................................................................2513.00300030
..................................................................................................................................AAGTAGTAACCTTTAAAGGGTCGTA............................................................................................................................................2512.00200020
......................................................................................................................................................................................................GAATGTGTTTCTGAAATCAACAAA--------------A----------................................................2512.00200020
......................................................................................................................................AGTAACCTTTAAAGGGTCG..............................................................................................................................................1912.00200020
..................................................................................................................................AAGTAGTAACCTTTAAAGGGTCGCC............................................................................................................................................2512.00200020
................................................................................................................................................................................ATCCTTTAAGTTACTACTTGCAA................................................................................................2312.00200020
................................................................................................................................................................................ATCCTTTAAGTTACTACTTGCAT................................................................................................2312.00200020
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTCCA.............................................................................................................................................2512.00200020
...................................................................................................................................................................................CTTTAAGTTACTACTTGC..................................................................................................1811.00100010
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTCGTTA...........................................................................................................................................2711.00100010
..................................................................................................................................AAGTAGTAACCTTTAAAGGGTC...............................................................................................................................................2211.00100010
................................................................................................................................................................................ATCCTTTAAGTTACTACTTG...................................................................................................2011.00100010
................................................................................................................................................................................ATCCTTTAAGTTACTACTTGCC.................................................................................................2211.00100010
...............................................................................................................................................................................GATCCTTTAAGTTACTACTTGCA.................................................................................................2311.00100010
......................................................................................................................................................................................................GAATGTGTTTCTGAAATCAACA...........................................................................2211.00100010
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTG...............................................................................................................................................2311.00100010
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTT...............................................................................................................................................2311.00100010
..................................................................................................................................AAGTAGTAACCTTTAAAGGGTCTC.............................................................................................................................................2411.00100010
.....................................................................................................................................TAGTAACCTTTAAAGGGTC...............................................................................................................................................1911.00101000
...............................................................................................................................................................................GATCCTTTAAGTTACTACTTG...................................................................................................2111.00100010
.................................................................................................................................TAAGTAGTAACCTTTAAAGGGTTT..............................................................................................................................................2411.00100010
...................................................................................................................................AGTAGTAACCTTTAAAGGGTC...............................................................................................................................................2111.00100010
..................................................................................................................................AAGTAGTAACCTTTAAAGGGTCT..............................................................................................................................................2311.00100010
.......................................................................................................................................GTAACCTTTAAAGGGTCG..............................................................................................................................................1811.00100010
..................................................................................................................................AAGTAGTAACCTTTAAAGG..................................................................................................................................................1911.00100010
droVir3
AAT-------------------------------------------T----------------------------------------------------------------------ATACATGTGCCTTAAGTAGTAACCATTAAGAGGTTGTTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATGACAAATGCATAGCAAATCAGCAAA--------------TCGATAAGA-------C-----AAA----CTAAAA-AATTTAAATCATT----GCTAAGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTTG..............................................................................................................................................24130837.00308370071310070143622112111402404000031194274113090115028000001048191945553042360001312864972602110002200013121
................................................................................................................................................................................ACCTTTTAATGTACTACTTATG.................................................................................................221979.009790005780000000000000000000000000000000710000000114121319152432272520100642100000882200000016192426
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTTT..............................................................................................................................................241776.00776000700000100000000000000000000000001000000000000000101000007650000000000000000000
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTT...............................................................................................................................................231183.001830007400000000000000000000000010010012100100000100114734200017610000000000000000001
.................................................................................................................................TAAGTAGTAACCATTAAGAGGT................................................................................................................................................221161.00161000360000000000000000000000000000000000000000023610101391019110002920000000000000000100
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTTGT.............................................................................................................................................25169.0069000150000000000000000000000000000001320000000000100030310002360000000000000001001
.................................................................................................................................TAAGTAGTAACCATTAAGAGG.................................................................................................................................................21160.0060000120000000000000000000000000000000000000000011114553530001160000000100000000001
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTTC..............................................................................................................................................24144.004400010000000000000000000000000000000000000000000000000000000430000000000000000000
...............................................................................................................................CTTAAGTAGTAACCATTAAGAGGT................................................................................................................................................24144.00440002000000000000000000000000000000000000000104314284335000400000000000000000000
..................................................................................................................................AAGTAGTAACCATTAAGAGGTTG..............................................................................................................................................23136.003600230000000000000000000000000000000100000000000000000000000300000000000000000000
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTTA..............................................................................................................................................24133.003300000000001000000000000000000000000000000000000000000000000320000000000000000000
................................................................................................................................................................................ACCTTTTAATGTACTACTTA...................................................................................................20128.00280004000000000000000000000000000000100000000001104231333000100000001000000000000
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTTGA.............................................................................................................................................25124.002400010000000000000000000000000000000000000000000000000000000230000000000000000000
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTTGC.............................................................................................................................................25124.0024000110000000000000000000000000000000000000000000000000000000130000000000000000000
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTTGTT............................................................................................................................................26121.002100040000000000000000000000000000000000000000000000020100002120000000000000000000
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTTGTC............................................................................................................................................26121.00210005000000000000000000100000000000000000000000000001113000360000000000000000000
................................................................................................................................TTAAGTAGTAACCATTAAGAGGTTG..............................................................................................................................................25118.001800000000000000000000000000000000000000000000000001000000000170000000000000000000
...................................................................................................................................AGTAGTAACCATTAAGAGGTTG..............................................................................................................................................22117.001700010000000000000000000000000000000000000000000000000000000160000000000000000000
................................................................................................................................TTAAGTAGTAACCATTAAGAGGTT...............................................................................................................................................24115.00150008000000000000000000000000000000001000000000000011000000040000000000000000000
.................................................................................................................................TAAGTAGTAACCATTAAGA...................................................................................................................................................19111.00110002000000000000000000000000000000000000000000000001000000150000001000000000010
................................................................................................................................................................................ACCTTTTAATGTACTACTTAT..................................................................................................2119.0090006000000000000000000000000000000000000000000000000000000030000000000000000000
................................................................................................................................................................................ACCTTTTAATGTACTACTTATT.................................................................................................2217.0070003000000000000000000000000000000000000000000000000010000020000000000000010000
.................................................................................................................................TAAGTAGTAACCATTAAGAG..................................................................................................................................................2017.0070003000000000000000000000000000000000000000000001000000000020000000000000010000
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTTGTTT...........................................................................................................................................2717.0070000000000000000000000000000000100000000000000001000000000050000000000000000000
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTC...............................................................................................................................................2316.0060006000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTTGTA............................................................................................................................................2616.0060000000000000000000000000000000000000000000001000100000000220000000000000000000
................................................................................................................................................................................ACCTTTTAATGTACTACTTATC.................................................................................................2215.0050004000000000000000000000000000000000000000000000000000000010000000000000000000
................................................................................................................................TTAAGTAGTAACCATTAAGAGGT................................................................................................................................................2315.0050001000000000000000000000000000000000000000000000001010000200000000000000000000
.................................................................................................................................TAAGTAGTAACCATTAAGAGGC................................................................................................................................................2215.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CTTTTAATGTACTACTTATGACA..............................................................................................2314.0040000000000000000000000000000000000000000000001000020100000000000000000000000000
.........................................................................................................................................................TTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATG.................................................................................................3914.0040000000000000000000000000000000000000000000000011010100000000000000000000000000
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTCT..............................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000040000000000000000000
.................................................................................................................................................................................CCTTTTAATGTACTACTTATG.................................................................................................2114.0040003000000000000000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................CTTAAGTAGTAACCATTAAGAGG.................................................................................................................................................2314.0040001000000000000000000000000000000000000000000000010000000110000000000000000000
.......................................................................................................................................GTAACCATTAAGAGGTTG..............................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000040000000000000000000
...............................................................................................................................................................................CACCTTTTAATGTACTACTTATG.................................................................................................2314.0040001000000000000000000000000000000100000000000000001001000000000000000000000000
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTTGTCC...........................................................................................................................................2713.0030002000000000000000000000000000000000000000000000001000000000000000000000000000
......................................................................................................................................AGTAACCATTAAGAGGTTG..............................................................................................................................................1913.0030002000000000000000000000000000000000000000000000000000000010000000000000000000
..................................................................................................................................................................................CTTTTAATGTACTACTTATG.................................................................................................2013.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ACCTTTTAATGTACTACT.....................................................................................................1813.0030000000000000000000000000000000000000000000000002010000000000000000000000000000
.................................................................................................................................TAAGTAGTAACCATTAAGAGGTCC..............................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000020000000000000000010

Generated: 10/20/2015 at 11:20 PM