ID:

dan_2785

 Coordinate:

scaffold_13337:22464691-22464841 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.6

Flybase annnotation

exon [dana_GLEANR_8246:2]; CDS [Dana\GF23450-cds]; intron [Dana\GF23450-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGGCGCGGCGTGATCACTACCATCTGTGCTGACCCCACAGGCTTGTGGCTGGCCACAAGAACAAGCGGTGGAAAGCACATTTGCTGGAATCTACGCTTCCGGCTACCCAGTGCCGAGATCAAACACCCGGCAGACTCCTGGATCCGTAAAATGGCATGTCATCCAACGGAGCCATCGTAACGTATCCGTGTGGATAACGAGGAACATCGAAACGGATCGGGGCGACACACCGTGCTGTGGGCCAGTCCAGC
*****************************************************..............(((.....))).((((((((..........((((((........)))).))........))))))))(((((((((((((...))))......)))))..)))).******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
 V105
male body		 V106
head
 V039
embryo
.........................................................................................................................................................................................................GAACATCGAAACGGATCGGGGC............................ 22 0 1 3.00 3 2 1 0 0 0 0
.........................................................................................................................................................................................................GAACATCGAAACGGATCGGGGCGA.......................... 24 0 1 3.00 3 2 1 0 0 0 0
.........................................................................................................................................................................................................GAACATCGAAACGGATCGGGGCG........................... 23 0 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................ATGGCATGTCATCCAACGGAGC............................................................................... 22 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................................................GAACATCGAAACGGATCGGGGCGACA........................ 26 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................................................................ATCCAACGTTGCCATCGT......................................................................... 18 2 10 1.30 13 4 0 8 0 1 0
..............................................................................................................................................................................................TGGATAACGAGGAACATCGAAACGGA................................... 26 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................GGAACATCGAAACGGATCGGGGCG........................... 24 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................GGAACATCGAAACGGATCGGG.............................. 21 0 1 1.00 1 1 0 0 0 0 0
.............TCACTACCATCTGTGCTGACCCCACAGGC................................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
........................TGTGCTGACCCCACAGGCTTGTGGC.......................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................ATCCAACGGAGCCATCGTAACGTATC................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................GGAACATCGAAACGGATCGGGGCGACA........................ 27 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................GGAACATCGAAACGGATCGGGG............................. 22 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................GTGTGGATAACGAGGAACATCGAAACGG.................................... 28 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................................AACATCGAAACGGATCGGGGCGAC......................... 24 0 1 1.00 1 1 0 0 0 0 0
.............TCACTACCATCTGTGCTGACCCCAC..................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.....................................................CACAAGAACAAGCGGTGGAAAGCACATT.......................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................CTTCCGGCTACCCAGTGCCGAG...................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................GAGGAACATCGAAACGGATCGGGG............................. 24 0 1 1.00 1 1 0 0 0 0 0
......GGCGTGATCACTACCATCTGTGCTG............................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................GACTCCTGGATCCGTAAAATGGCAT.............................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................ATGGCATGTCATCCAACGGAGCCA............................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................ATGGCATGTCATCCAACGGAGCC.............................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
...............ACTACCATCTGTGCTGACCCCACAGGC................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
...................................................................................CTGGAATCTACGCTTCCGGCTACC................................................................................................................................................ 24 0 3 1.00 3 3 0 0 0 0 0
...........GATCACTACCATCTGTGCTGACCCC....................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
........CGTGATCACTACCATCTGTGCTG............................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TCGAAACGGATCGGGGCGAC......................... 20 0 1 1.00 1 1 0 0 0 0 0
...................................................................................CGGGAATCTACGCTTCCGGCTACC................................................................................................................................................ 24 1 3 0.67 2 0 2 0 0 0 0
...................................................................................CTCGAATCTACGCTTCCGGCTACC................................................................................................................................................ 24 1 3 0.67 2 0 2 0 0 0 0
...................................................................................................................................................................................................................................CACCGTGCTGTGGGCCAGTCC... 21 0 2 0.50 1 0 1 0 0 0 0
........................................................................................................................................................................................................................TCGGGGCGACACACCGTGCTGTGGGCC........ 27 0 2 0.50 1 0 1 0 0 0 0
........................................................................................................................................................................................................................TCGGGGCTTCACACCGTGCTAT............. 22 3 2 0.50 1 0 0 1 0 0 0
........................................................................................................................................................................................................................TCGGGGCGACACACCGTGCTGTG............ 23 0 2 0.50 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................GACACACCGTGCTGTGGGCCAGTCCAG. 27 0 2 0.50 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................CGGGGCGACACACCGTGCTGTGGGC......... 25 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................................................................................TCGGGGCGACACACCGTGCTGTGG........... 24 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................................................................................TCGGGGCGACACACCGTGCTGTGGGC......... 26 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................CAAACACCCGGCAGACTCCTGGATCCG......................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0
.................................................................................................................CGAGATCAAACACCCGGCAGACT................................................................................................................... 23 0 3 0.33 1 0 0 0 1 0 0
...........................................................................................................................................................ATGTCATCCAACGGAGCCATCGT......................................................................... 23 0 3 0.33 1 1 0 0 0 0 0
...............................................................................TTTGCTGGAATCTACGCTTCCGGC.................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................CACCGCGTGCTGTGGGCCA....... 19 2 3 0.33 1 0 0 1 0 0 0
...................................................................................CTGGAATCGACGCTTCCGGCTACC................................................................................................................................................ 24 1 3 0.33 1 1 0 0 0 0 0
....................................................................................................................GATCAAACACCCGGCAGACTCCTG............................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0
...................................................................................CTGGAATCGACGCTTCCGGCTACCC............................................................................................................................................... 25 1 3 0.33 1 1 0 0 0 0 0
..................................................................................................................GAGATCAAACACCCGGCAGACTCCTGGA............................................................................................................. 28 0 3 0.33 1 1 0 0 0 0 0
............................................................................................................................ACCCGGCAGACTCCTGGATCCGTA....................................................................................................... 24 0 6 0.33 2 2 0 0 0 0 0
......................................................................................................................TCAAACACCCGGCAGACTCCTGGATC........................................................................................................... 26 0 3 0.33 1 0 1 0 0 0 0
...................................................................................................................AGATCAAACACCCGGCAGACTCC................................................................................................................. 23 0 3 0.33 1 0 1 0 0 0 0
...................................................................................CCGGAATCTACGCTTCCGGCTAC................................................................................................................................................. 23 1 3 0.33 1 0 1 0 0 0 0
...................................................................................CTGGAATCTACGCTTCCGGCTAC................................................................................................................................................. 23 0 3 0.33 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................GTATAGGGGCGACACACC.................... 18 2 5 0.20 1 0 1 0 0 0 0
...........................................................................................................................CACCCGGCAGACTCCTGGATCCGTA....................................................................................................... 25 0 6 0.17 1 1 0 0 0 0 0
............................................................................................................................ACCCGGCAGACTCCTGGATCCG......................................................................................................... 22 0 6 0.17 1 1 0 0 0 0 0
..........................................................................................................................ACACCCGGCAGACTCCTGGATC........................................................................................................... 22 0 6 0.17 1 1 0 0 0 0 0
...............................................................................................................................................................AATCCAACGTAGCCATCGT......................................................................... 19 2 6 0.17 1 0 0 0 1 0 0
.......................................................................................................................................................................................................................ATCGGGGCGACAGACCAAGC................ 20 3 7 0.14 1 0 0 1 0 0 0
....................................................................................................................................................................................................................................CCCGTGTTGTGGGCAAGTCC... 20 3 7 0.14 1 0 0 1 0 0 0
...............................................................................................................................................................AATCCAACGGGGCCATCG.......................................................................... 18 2 8 0.13 1 0 0 1 0 0 0
...................................................................................................................AGATCAAACACACGGCAAACA................................................................................................................... 21 3 11 0.09 1 0 0 0 0 0 1
........................................................AAGGACAAGCGATCGAAAGC............................................................................................................................................................................... 20 3 19 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

TCCGCGCCGCACTAGTGATGGTAGACACGACTGGGGTGTCCGAACACCGACCGGTGTTCTTGTTCGCCACCTTTCGTGTAAACGACCTTAGATGCGAAGGCCGATGGGTCACGGCTCTAGTTTGTGGGCCGTCTGAGGACCTAGGCATTTTACCGTACAGTAGGTTGCCTCGGTAGCATTGCATAGGCACACCTATTGCTCCTTGTAGCTTTGCCTAGCCCCGCTGTGTGGCACGACACCCGGTCAGGTCG
*******************************************************************************..............(((.....))).((((((((..........((((((........)))).))........))))))))(((((((((((((...))))......)))))..)))).***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V106
head
 V039
embryo
 V055
head
 V105
male body
...................................................................CACCTTTCGTGTAAACGACCTTAGAT.............................................................................................................................................................. 26 0 2 4.50 9 1 8 0 0 0 0
.....................................................................................................................................TGAGGACCTAGGCATTTTACCGTACAG........................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
.....................................................................CCTTTCGTGTAAACGACCTTAGAT.............................................................................................................................................................. 24 0 3 2.00 6 1 5 0 0 0 0
..........................................................................................................................................................................................GCACACCTATTGCTCCTTGTAGCTT........................................ 25 0 2 2.00 4 3 1 0 0 0 0
......................................................................................................................................GAGGACCTAGGCATTTTACCGTACAG........................................................................................... 26 0 2 2.00 4 4 0 0 0 0 0
........................................................................................................................................................................................AGGCACACCTATTGCTCCTTGTAGCTT........................................ 27 0 2 1.50 3 3 0 0 0 0 0
.........................................................................................................................................................................................GGCACACCTATTGCTCCTTGTAGCTT........................................ 26 0 2 1.50 3 3 0 0 0 0 0
........................................................................................................................................GGACCTAGGCATTTTACCGTACAG........................................................................................... 24 0 2 1.50 3 3 0 0 0 0 0
.........................................................................................AGATGCGAAGGCCGATGGGTCACGG......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
......CCGCACTAGTGATGGTAGACACGACT........................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................GCCGATGGGTCACGGCTCTAGTTT................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
................................................................CGCCACCTTTCGTGTAAACGACCTT.................................................................................................................................................................. 25 0 2 1.00 2 1 1 0 0 0 0
........................................CGAACACCGACCGGTGTTCTTGTTCG......................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................GGCACACCTATTGCTCCTTGTAGCT......................................... 25 0 2 1.00 2 2 0 0 0 0 0
...GCGCCGCACTAGTGATGGTAGACACGACT........................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
.................ATGGTAGACACGATAGGGG....................................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 1 0 0 0
..................................................................CCACCTTTCGTGTAAACGACCTTAGAT.............................................................................................................................................................. 27 0 2 1.00 2 0 2 0 0 0 0
.........................................................................................AGATGCGAAGGCCGATGGGTCACGGCT....................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CGATGGGTCACGGCTCTAGTTTGT.............................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................TAGGTTGCCTCGGTAGCATTGCATAG................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................GTCTGAGGACCTAGGCATATTACCGTA.............................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................GGTAGCATTGCATAGGCACACCTA........................................................ 24 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................CCGATGGGTCACGGCTCTAGT.................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................GTCTGAGGACCTAGGCAATTTACCGT............................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................GTAGGTTGCCTCGGTAGCATTGCAT................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................GGCCGTCTGAGGACCTAGGCATTT..................................................................................................... 24 0 4 0.75 3 3 0 0 0 0 0
..............................................................................................................................GGCCGTCTGAGGACCTAGGCATT...................................................................................................... 23 0 6 0.67 4 4 0 0 0 0 0
.....................................................................CCTTTCGTGTAAACGACCTTAGATG............................................................................................................................................................. 25 0 3 0.67 2 0 2 0 0 0 0
..........................................................................CGTGTAAACGACCTTAGATGCGAAG........................................................................................................................................................ 25 0 3 0.67 2 0 1 0 1 0 0
..............................................................................................................................GGCCGTCTGAGGACCTAGGCATTTT.................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................................................AGGCGCACCTATTGCTCCTTGTAGCTTT....................................... 28 1 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................CCGTACAGTAGGTTGCCTCGGTAGCAT........................................................................ 27 0 2 0.50 1 0 1 0 0 0 0
.................................................................................................................................CGTCTGAGGACCTAGGCATTTT.................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0
..................................................................CCACCTTTCGTGTAAACGACCTTAGAC.............................................................................................................................................................. 27 1 2 0.50 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................CCCCGCTGTGTGGCACGACACCCGGT....... 26 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................................................GCACACCTATTGCTCCTTGTAGCTGC....................................... 26 2 2 0.50 1 0 1 0 0 0 0
........................................................................................................................................GGACCTAGGCATTTTACCGTACA............................................................................................ 23 0 2 0.50 1 1 0 0 0 0 0
..CGCGCCGCACTAGTGATGGTAGACA................................................................................................................................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0 0
....CGCCGCACTAGTGATGGTAGACAC............................................................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................GGGCCGTCTGAGGACCTAGGCATTTTAC.................................................................................................. 28 0 2 0.50 1 1 0 0 0 0 0
............................................................................................................................................................................................ACACCTATTGCTCCTTGTAGCTT........................................ 23 0 2 0.50 1 1 0 0 0 0 0
TCCGCGCCGCACTAGTGATGGTAG................................................................................................................................................................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0
..................................................................................................................................................................................................................................TGTGGCACGACACCCGGTCAGGT.. 23 0 2 0.50 1 1 0 0 0 0 0
TCCGCGCCGCACTAGTGATGGTAGAC................................................................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0
...................................................................CACCTTTCGTGTAAACGACCTTAGTT.............................................................................................................................................................. 26 1 2 0.50 1 0 1 0 0 0 0
TCCGCGCCGCACTAGTGATGGTA.................................................................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................................................AGGCACACCTATTGCTCCTTGTAG........................................... 24 0 2 0.50 1 1 0 0 0 0 0
.CCGCGCCGCACTAGTGATGGTAGAC................................................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................................................AGGCACACCTATTGCTCGTTGTAGCT......................................... 26 1 2 0.50 1 1 0 0 0 0 0
................................................................CGCCACCTTTCGTGTAAACGACCTTCT................................................................................................................................................................ 27 2 2 0.50 1 0 1 0 0 0 0
........................................................................................................................................................................................AGGCACACCTATTGCTCATTGTAGCT......................................... 26 1 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................................................GCACACCTATTGCTCCTTGTAGCTTG....................................... 26 1 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................GGACCTAGGCATTTTACCGTACAGT.......................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0
................GATGGTAGACTCGATAGGGG....................................................................................................................................................................................................................... 20 3 14 0.43 6 1 0 5 0 0 0
...........................................................................................................................................................TACAGTAGGTTGCCTCGGTAGCAT........................................................................ 24 0 3 0.33 1 0 0 1 0 0 0
................................................................................................................GGCTCTAGTTTGTGGGCCGTCTG.................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0
..........................................................................................................................................................GTACAGTAGGTTGCCTCGGTAGCAT........................................................................ 25 0 3 0.33 1 1 0 0 0 0 0
....................................................................................................................CTAGTTTGTGGGCCGTCTGAGGAC............................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0
....................................................................................ACCTTAGATGCGAAGGGCGATGGGT.............................................................................................................................................. 25 1 4 0.25 1 1 0 0 0 0 0
...............AGATGGTTGACACGACTCGG........................................................................................................................................................................................................................ 20 3 4 0.25 1 1 0 0 0 0 0
......................................................................CTTTCGTGTAAACGACCTTAGATG............................................................................................................................................................. 24 0 4 0.25 1 0 1 0 0 0 0
.CCGCTCCGCACTAGTGAGCG...................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0
.......CGCTCTAGAGATGGTAGA.................................................................................................................................................................................................................................. 18 2 14 0.21 3 0 0 3 0 0 0
.............................................................................................................................GGGCCGTCTGAGGACCTAGGCATT...................................................................................................... 24 0 6 0.17 1 1 0 0 0 0 0
................................................................................................................................CCGTCTGAGGACCTAGGTATT...................................................................................................... 21 1 6 0.17 1 0 1 0 0 0 0
...........................................................................................................................GTGGGCCGTCTGAGGACCT............................................................................................................. 19 0 6 0.17 1 1 0 0 0 0 0
...............................................................................................................................GCCGTCTGAGGACCTAGGCATT...................................................................................................... 22 0 6 0.17 1 1 0 0 0 0 0
...........................................................................................................................GTGGGCCGTCTGAGGACCTAGGCAT....................................................................................................... 25 0 6 0.17 1 1 0 0 0 0 0
...........................CGACTGAGGTCTTCGAACAC............................................................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 0 1 0
............TAGTGATGGTTGACACAAGT........................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 1 0
................GATGGTAGACTCGATTAGGG....................................................................................................................................................................................................................... 20 3 17 0.06 1 1 0 0 0 0 0
...............................................................TGGCCACCCTTCGTGTTAA......................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 1 0
...............................................................................................................................................................GGAGGTTGCCTCGATAGCTT........................................................................ 20 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:22464641-22464891 - dan_2785 AGGCGCGGCGTGATCACTACCATCTGTGCTGACCCCACAGGCTTGTGGCTGGCCACAAGAACAAGCGGTGGAAAGCACATTTGCTGGAATCTACGCTTCCGGCTACCCAGTGCCGAGATCAAACACCCGGCAGACTCCTGGATCCGTAAAATGGCATGTCATCCAACGGAGCCATCGTA-----------------------------ACGTATCCGTGTGGATAACGAGGAACATCGAAACGGATCGGGGCGACACACCGTGCTGTGGGCCAGTCCAGC----------------------------------------
droBip1 scf7180000395971:695470-695738 - AGGCACGGCGTGATCACCACTATTTGTGCGGACCCCACAGGCTCCTGGCTAGCCACTGGAACAAGCGGAGGAAAGCACATTTGCTGGGATCTGCGCTTCCGGCTTCCGATTGCCGAGATCAAACATCCAGCCGACTCTTGGATTCGCAAAGTGGCGTGTCATCCCACTGAGCCCTCCTATCTGATCTCCGCCTCACAGTCTAACAATGAGGTATCTGTGTG---------GAACATTGAAACAGGTCA--GCGACAAACCGTACTGTGGGCGAGTCCAAC----------------------------------------
droKik1 scf7180000301923:204553-204821 + CGGCACGGAGTTATCACCACCATCTGTGCGGATCCCACGGGCTCGTGGCTAGCCACTGGCACAAGCGGGGGAAAGCACATCTGCTGGGATCTGCGTTTCCGATTGCCCATCGCCGAGATCAAACATCCCGCCGACTCGTGGATCCGCAAGGTGGCCTGCCATCCCACAGAGCCATCGTATCTCATTTCGGCCTCGCAATCCAACAACGAGGTGTCCGTGTG---------GAATATTGAGACGGGTCA--GCGGCAGACAGTTTTGTGGGCTAGTCCGGC----------------------------------------
droFic1 scf7180000454106:2112679-2112947 + CGGCACGGAGTGATCACCACGATCTGTGCGGATCCCACGGGATCTTGGCTGGCCACCGGAACCAGCGGAGGTAAACACATCTGCTGGGACCTGCGGTTCCGTTTGCCCATCGCCGAAATCAAGCATCCCGCCGATTCGTGGATAAGGAAGGTGGCCTGCCATCCCACGGAGCCTTCGTATCTGATCTCCGCCTCGCAGTCGAACAACGAGGTGTCCGTGTG---------GAACATCGAAACGGGTCA--GCGCCAGGCTGTTTTGTGGGCCAGTCCGGT----------------------------------------
droEle1 scf7180000491194:217840-218108 - CGGCACGGGGTGATCACCACCATCTGTGCGGATCCCACGGGCTCGTGGTTGGCCACCGGCACCAGTGGGGGCAAACACATCTGCTGGGATCTGCGCTTCCGTCTGCCCATCGCGGAAATCAAGCATCCGGCGGACTCGTGGATCAGGAAGGTGGCCTGCCATCCCACGGAGCCCTCGTACCTGATCTCCGCCTCGCAGTCAAACAACGAGGTGTCCGTGTG---------GAACATCGAGACGGGTCA--GCGCCAGACGGTGCTGTGGGCCAGTCCCGC----------------------------------------
droRho1 scf7180000779488:278727-278995 - CGGCATGGGGTGATCACCACCATCTGTGCGGATCCCACGGGCTCTTGGCTGGCCACCGGCACCAGCGGAGGCAAACACATTTGCTGGGACCTGCGCTTCCGCCTGCCCATCGCCGAGATCAAACATCCGGCCGACTCCTGGATAAGGAAGGTGGCCTGCCATCCCACGGAGCCCTCATATCTCATCTCCGCCTCGCAGTCGAACAACGAGGTGTCCGTGTG---------GAACATCGAGACGGGTCA--GCGCCAGACGGTATTGTGGGCCAGTCCGGT----------------------------------------
droBia1 scf7180000302402:7799350-7799634 - CGGCACGGGGTGATCACCACCATCTGTGCGGATCCCACTGGCTCATGGCTGGCCACCGGAACGAGTGGCGGCAAGCACATCTGCTGGGACCTGCGCTTCCGCCTGCCCATTGCCGAGATCAAGCATCCGGCTGATTCCTGGATCCGCAAGGTGGCCTGCCATCCCACAGAGCCCTCGTATCTGATCTCAGCCTCGCAGTCGAACAACGAGGTGTCCGTGTG---------GAATATCGAGACGGGTCA--GCGCCAGACGGTCTTGTGGGCCAGCCCGATGGCGGCCTTGTCCAGC------------------------
droTak1 scf7180000415364:59893-60161 + CGGCACGGGGTGATCACCACCATCTGTGCGGATCCCACTGGCTCCTGGTTGGCCACCGGAACGAGTGGCGGCAAGCATATCTGCTGGGATCTGCGCTTTCGCCTGCCCATTGCCGAGATCAAACATCCGAATGATTCGTGGATACGCAAAGTGGCCTGCCATCCCACGGAACCCTCGTATCTGATCTCCGCCTCGCAGTCAAACAATGAGGTTTCGGTGTG---------GAATATCGAGACGGGTCA--ACGGCAGACTGTCTTGTGGGCCAGTCCAGT----------------------------------------
droEug1 scf7180000407340:35837-36105 + CGTCATGGAGTGATCACCACAATTTGTGCGGATCCAACTGGTTCTTGGTTAGCCACCGGCACTAGTGGTGGTAAACACATCTGCTGGGATCTACGCTTCCGTCTGCCCATAGCTGAAATCAAGCATCCAGCTGATTCGTGGATACGCAAGGTGGCCTGTCATCCAACGGAGCCTTCGTATCTGATCTCAGCCTCGCAGTCGAACAACGAGGTGTCCGTATG---------GAATATCGAAACGGGACA--GCGGCAGACGGTCTTGTGGGCAAGTCCGAT----------------------------------------
dm3 chr3R:5067070-5067338 - CGTCATGGGGTGATCACAACGATCTGTGCGGATCCAACGGGATCTTGGCTGGCCACCGGTACCAGCGGCGGTAAGCACATCTGCTGGGATCTACGCTTCCGTCTGCCCATTGCGGAAATCAAGCATCCGGCGGATTCGTGGATACGCAAGGTGGCCTGCCATCCCACAGAGCCTTCATACCTGATCTCAGCCTCGCAGTCAAACAATGAGGTATCCGTGTG---------GAATATAGAAACGGGACA--GCGCCAGACGGTTTTGTGGGCAAGTCCGGT----------------------------------------
droSim2 3r:15946259-15946527 + CGTCATGGGGTGATTACAACGATCTGTGCGGATCCAACTGGATCTTGGCTGGCCACCGGTACCAGCGGCGGTAAGCACATCTGCTGGGATCTACGCTTCCGGCTTCCCATTGCAGAAATAAAACATCCGGCGGATTCGTGGATACGCAAGGTGGCCTGCCATCCCACTGAGCCTTCATACCTGATCTCAGCATCGCAGTCAAACAATGAGGTATCCGTGTG---------GAATATAGAGACGGGACA--GCGCCAGACGGTTTTGTGGGCAAGTCCGGT----------------------------------------
droSec2 scaffold_0:16814890-16815158 + CGCCATGGGGTGATCACAACGATCTGTGCAGATCCAACTGGATCTTGGCTGGCCACCGGTACCAGCGGCGGTAAGCACATCTGCTGGGATCTACGCTTCCGGCTTCCCATTGCGGAAATAAAGCATCCGGCGGATTCGTGGATACGCAAGGTGGCCTGCCATCCCACTGAGCCTTCATACCTGATCTCAGCATCGCAGTCAAACAATGAGGTATCCGTGTG---------GAATATAGAGACGGGACA--GCGGCAGACGATTTTGTGGGCAAGTCCGGT----------------------------------------
droYak3 3R:9119501-9119769 - CGGCATGGGGTGATCACAACGATATGTGCGGATCCAACTGGATCTTGGCTGGCCACCGGTACCAGCGGTGGTAAGCACATCTGCTGGGATCTACGCTTTCGGCTCCCCATTGCGGAAATAAAGCATCCGGCGGATTCGTGGATACGCAAGGTGGCCTGCCATCCCACAGAGCCCTCATACCTGATCTCAGCCTCGCAGTCGAACAACGAGGTATCCGTGTG---------GAACATAGAGACGGGACA--GCGCCAGACTGTTTTGTGGGCCAGTCCGGT----------------------------------------
droEre2 scaffold_4770:16532994-16533262 + CGGCATGGGGTGATCACAACGATCTGTGCGGATCCGACTGGATCGTGGCTGGCCACCGGTACCAGCGGTGGTAAACACATCTGTTGGGATCTACGCTTTCGTCTACCCATCGCGGAAATAAAGCATCCAGCGGATTCGTGGATACGCAAGGTGGCCTGCCATCCCACAGAGCCCTCATACTTGATCTCAGCCTCGCAGTCGAACAACGAGGTATCCGTGTG---------GAATATAGAGACGGGACA--GCGCCAGACGGTCTTGTGGGCCAGTCCGGT----------------------------------------
dp5 2:40658-40939 - CGGCACGGGGTCATCACCACAATCTGTGCCGATCCCACCGGCTCTTGGCTGGCTACAGGCACCAGCGGCGGCAAGCATATCTGTTGGGATTTGCGATTCCGTTTGCCCATTGCAGAGATAAAGCACCCGGCAGACTCGTGGATCCGAAAGGTGGCCTGCCATCCCACAGAGCCGTCATATCTGATCTCAGCCTCGCAGTCGAATAACGAAGTGTCCGTGTG---------GAACATCGAGACGGGTCA--ACGACAGACGGTCCTGTGGGCCAGTCCCGCCCCCGTGCTCACC---------------------------
droPer2 scaffold_7:2831029-2831337 - CGGCACGGGGTCATCACCACAATCTGTGCCGATCCCACCGGCTCTTGGCTGGCTACAGGCACCAGCGGCGGCAAGCATATCTGTTGGGATTTGCGATTCCGTTTGCCCATTGCAGAGATAAAGCACCCGGCAGACTCGTGGATCCGAAAGGTGGCCTGCCATCCCACAGAGCCGTCGTATCTGATCTCAGCCTCGCAGTCGAATAACGAGGTGTCCGTGTG---------GAACATCGAGACGGGTCA--ACGACAGACGGTCCTGTGGGCCAGTCCCGCCCCCGTGCTCACCAACACCAGTCTAAATGATCCGGCCACA
droWil2 scf2_1100000004921:3102284-3102552 + CGACATGGCGTCATTACTACAATTTGTGCGGATCCAACGGGTTCGTGGTTGGCCACTGGCACCAGCGGCGGCAAGCACATATGCTGGGATTTGCGTTTCCGGCTGCCAATTGCTGAGATTAAGCATCCGGCCGATTCCTGGATTCGCAAAGTGGCATGCCATCCAACGGAGCCTTCTTATTTGATCTCAGCTTCGCAATCCAATAACGAAGTATCGATATG---------GAATATTGAGACTGGTCA--GCGGCAAACAGTACTCTGGGCCAGTCCAGC----------------------------------------
droVir3 scaffold_13047:12455013-12455314 + CGTCATGGTGTCATCACCACCATTTGTGCGGATCCAACGGGCTCTTGGCTGGCAACGGGCACCAGTGGTGGCAAGCATATCTGCTGGGACTTGCGTTTCCGACTGCCTATAACCGAGATTAAGCATCCGGCGGACTCGTGGATAAGAAAAGTGGCCTGCCATCCAACGGAGCCATCATATCTGATCTCCGCCTCGCAGTCCAATAATGAAGTATCTGTATG---------GAACATTGAGACGGGTCA--ACGACAAACTGTGCTTTGGGCCAGCCCAGCACCCGTTCTGACCAATACCAGTCTCAATGATCC-------
droMoj3 scaffold_6540:29362194-29362501 - CGCCATGGCGTTATTACCACCATCTGTGCAGACCCAACTGGCTCCTGGCTGGCAACGGGCACCAGTGGTGGCAAACATATCTGCTGGGACCTGCGTTTCCGACTACCCATAACTGAGATAAAGCATCCAGCTGATTCTTGGATTAGAAAAGTTGCCTGCCATCCGACAGAGCCATCATATCTAATCTCAGCATCGCAGTCCAATAACGAGGTATCGGTTTG---------GAATATTGAGACCAGTCA--ACGACAAACAGTGCTGTGGGCGAGTCCAGCGCCCGTCTTAACCAATACCACTCAAAATGATCCAGCCAC-
droGri2 scaffold_14830:671280-671548 - CGTCACGGCGTAATTACGACCATCTGTGCAGATCCAACGGGCTCGTGGCTGGCAACGGGCACCAGTGGGGGCAAGCACATTTGCTGGGATCTGCGATTTCGGCTGCCCATAACAGAGATTAAGCATCCGGCGGACTCGTGGATAAGGAAAGTCGCCTGCCATCCCACGGAGCCATCGTATTTGATCTCCGCCTCGCAGTCGAACAATGAGGTGTCTGTGTG---------GAACATTGAGACGGGTCA--GCGACAAACGGTGCTCTGGGCCAGTTCGGC----------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AGGCGCGGCGTGATCACTACCATCTGTGCTGACCCCACAGGCTTGTGGCTGGCCACAAGAACAAGCGGTGGAAAGCACATTTGCTGGAATCTACGCTTCCGGCTACCCAGTGCCGAGATCAAACACCCGGCAGACTCCTGGATCCGTAAAATGGCATGTCATCCAACGGAGCCATCGTA-----------------------------ACGTATCCGTGTGGATAACGAGGAACATCGAAACGGATCGGGGCGACACACCGTGCTGTGGGCCAGTCCAGC----------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................GAACATCGAAACGGATCGGGGC....................................................................2213.003210000
......................................................................................................................................................................................................................................GAACATCGAAACGGATCGGGGCGA..................................................................2413.003210000
......................................................................................................................................................................................................................................GAACATCGAAACGGATCGGGGCG...................................................................2312.002200000
......................................................................................................................................................ATGGCATGTCATCCAACGGAGC....................................................................................................................................................2212.002200000
......................................................................................................................................................................................................................................GAACATCGAAACGGATCGGGGCGACA................................................................2612.002200000
...........................................................................................................................................................................................................................TGGATAACGAGGAACATCGAAACGGA...........................................................................2611.001010000
.....................................................................................................................................................................................................................................GGAACATCGAAACGGATCGGGGCG...................................................................2411.001100000
.....................................................................................................................................................................................................................................GGAACATCGAAACGGATCGGG......................................................................2111.001100000
.............TCACTACCATCTGTGCTGACCCCACAGGC......................................................................................................................................................................................................................................................................................2911.001100000
........................TGTGCTGACCCCACAGGCTTGTGGC...............................................................................................................................................................................................................................................................................2511.001010000
................................................................................................................................................................ATCCAACGGAGCCATCGTA-----------------------------ACGTATC.........................................................................................................2611.001100000
.....................................................................................................................................................................................................................................GGAACATCGAAACGGATCGGGGCGACA................................................................2711.001100000
.....................................................................................................................................................................................................................................GGAACATCGAAACGGATCGGGG.....................................................................2211.001100000
........................................................................................................................................................................................................................GTGTGGATAACGAGGAACATCGAAACGG............................................................................2811.001010000
.......................................................................................................................................................................................................................................AACATCGAAACGGATCGGGGCGAC.................................................................2411.001100000
.............TCACTACCATCTGTGCTGACCCCAC..........................................................................................................................................................................................................................................................................................2511.001010000
.....................................................CACAAGAACAAGCGGTGGAAAGCACATT...............................................................................................................................................................................................................................................2811.001100000
...............................................................................................CTTCCGGCTACCCAGTGCCGAG...........................................................................................................................................................................................................2211.001100000
...................................................................................................................................................................................................................................GAGGAACATCGAAACGGATCGGGG.....................................................................2411.001100000
......GGCGTGATCACTACCATCTGTGCTG.................................................................................................................................................................................................................................................................................................2511.001100000
....................................................................................................................................GACTCCTGGATCCGTAAAATGGCAT...................................................................................................................................................................2511.001100000
......................................................................................................................................................ATGGCATGTCATCCAACGGAGCCA..................................................................................................................................................2411.001100000
......................................................................................................................................................ATGGCATGTCATCCAACGGAGCC...................................................................................................................................................2311.001100000
...............ACTACCATCTGTGCTGACCCCACAGGC......................................................................................................................................................................................................................................................................................2711.001100000
...................................................................................CTGGAATCTACGCTTCCGGCTACC.....................................................................................................................................................................................................................2431.003300000
...........GATCACTACCATCTGTGCTGACCCC............................................................................................................................................................................................................................................................................................2511.001100000
........CGTGATCACTACCATCTGTGCTG.................................................................................................................................................................................................................................................................................................2311.001100000
...........................................................................................................................................................................................................................................TCGAAACGGATCGGGGCGAC.................................................................2011.001100000
................................................................................................................................................................................................................................................................CACCGTGCTGTGGGCCAGTCC...........................................2120.501010000
.....................................................................................................................................................................................................................................................TCGGGGCGACACACCGTGCTGTGGGCC................................................2720.501010000
.....................................................................................................................................................................................................................................................TCGGGGCGACACACCGTGCTGTG....................................................2320.501010000
............................................................................................................................................................................................................................................................GACACACCGTGCTGTGGGCCAGTCCAG.........................................2720.501010000
......................................................................................................................................................................................................................................................CGGGGCGACACACCGTGCTGTGGGC.................................................2520.501100000
.....................................................................................................................................................................................................................................................TCGGGGCGACACACCGTGCTGTGG...................................................2420.501100000
.....................................................................................................................................................................................................................................................TCGGGGCGACACACCGTGCTGTGGGC.................................................2620.501100000
.......................................................................................................................CAAACACCCGGCAGACTCCTGGATCCG..............................................................................................................................................................................2730.331100000
.................................................................................................................CGAGATCAAACACCCGGCAGACT........................................................................................................................................................................................2330.331000010
...........................................................................................................................................................ATGTCATCCAACGGAGCCATCGT..............................................................................................................................................2330.331100000
...............................................................................TTTGCTGGAATCTACGCTTCCGGC.........................................................................................................................................................................................................................2430.331100000
....................................................................................................................GATCAAACACCCGGCAGACTCCTG....................................................................................................................................................................................2430.331100000
..................................................................................................................GAGATCAAACACCCGGCAGACTCCTGGA..................................................................................................................................................................................2830.331100000
............................................................................................................................ACCCGGCAGACTCCTGGATCCGTA............................................................................................................................................................................2460.332200000
......................................................................................................................TCAAACACCCGGCAGACTCCTGGATC................................................................................................................................................................................2630.331010000
...................................................................................................................AGATCAAACACCCGGCAGACTCC......................................................................................................................................................................................2330.331010000
...................................................................................CTGGAATCTACGCTTCCGGCTAC......................................................................................................................................................................................................................2330.331100000
...........................................................................................................................CACCCGGCAGACTCCTGGATCCGTA............................................................................................................................................................................2560.171100000
............................................................................................................................ACCCGGCAGACTCCTGGATCCG..............................................................................................................................................................................2260.171100000
..........................................................................................................................ACACCCGGCAGACTCCTGGATC................................................................................................................................................................................2260.171100000
droBip1
AGGCACGGCGTGATCACCACTATTTGTGCGGACCCCACAGGCTCCTGGCTAGCCACTGGAACAAGCGGAGGAAAGCACATTTGCTGGGATCTGCGCTTCCGGCTTCCGATTGCCGAGATCAAACATCCAGCCGACTCTTGGATTCGCAAAGTGGCGTGTCATCCCACTGAGCCCTCCTATCTGATCTCCGCCTCACAGTCTAACAATGAGGTATCTGTGTG---------GAACATTGAAACAGGTCA--GCGACAAACCGTACTGTGGGCGAGTCCAAC----------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGGCACGGAGTTATCACCACCATCTGTGCGGATCCCACGGGCTCGTGGCTAGCCACTGGCACAAGCGGGGGAAAGCACATCTGCTGGGATCTGCGTTTCCGATTGCCCATCGCCGAGATCAAACATCCCGCCGACTCGTGGATCCGCAAGGTGGCCTGCCATCCCACAGAGCCATCGTATCTCATTTCGGCCTCGCAATCCAACAACGAGGTGTCCGTGTG---------GAATATTGAGACGGGTCA--GCGGCAGACAGTTTTGTGGGCTAGTCCGGC----------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CGGCACGGAGTGATCACCACGATCTGTGCGGATCCCACGGGATCTTGGCTGGCCACCGGAACCAGCGGAGGTAAACACATCTGCTGGGACCTGCGGTTCCGTTTGCCCATCGCCGAAATCAAGCATCCCGCCGATTCGTGGATAAGGAAGGTGGCCTGCCATCCCACGGAGCCTTCGTATCTGATCTCCGCCTCGCAGTCGAACAACGAGGTGTCCGTGTG---------GAACATCGAAACGGGTCA--GCGCCAGGCTGTTTTGTGGGCCAGTCCGGT----------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGGCACGGGGTGATCACCACCATCTGTGCGGATCCCACGGGCTCGTGGTTGGCCACCGGCACCAGTGGGGGCAAACACATCTGCTGGGATCTGCGCTTCCGTCTGCCCATCGCGGAAATCAAGCATCCGGCGGACTCGTGGATCAGGAAGGTGGCCTGCCATCCCACGGAGCCCTCGTACCTGATCTCCGCCTCGCAGTCAAACAACGAGGTGTCCGTGTG---------GAACATCGAGACGGGTCA--GCGCCAGACGGTGCTGTGGGCCAGTCCCGC----------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGGCATGGGGTGATCACCACCATCTGTGCGGATCCCACGGGCTCTTGGCTGGCCACCGGCACCAGCGGAGGCAAACACATTTGCTGGGACCTGCGCTTCCGCCTGCCCATCGCCGAGATCAAACATCCGGCCGACTCCTGGATAAGGAAGGTGGCCTGCCATCCCACGGAGCCCTCATATCTCATCTCCGCCTCGCAGTCGAACAACGAGGTGTCCGTGTG---------GAACATCGAGACGGGTCA--GCGCCAGACGGTATTGTGGGCCAGTCCGGT----------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGGCACGGGGTGATCACCACCATCTGTGCGGATCCCACTGGCTCATGGCTGGCCACCGGAACGAGTGGCGGCAAGCACATCTGCTGGGACCTGCGCTTCCGCCTGCCCATTGCCGAGATCAAGCATCCGGCTGATTCCTGGATCCGCAAGGTGGCCTGCCATCCCACAGAGCCCTCGTATCTGATCTCAGCCTCGCAGTCGAACAACGAGGTGTCCGTGTG---------GAATATCGAGACGGGTCA--GCGCCAGACGGTCTTGTGGGCCAGCCCGATGGCGGCCTTGTCCAGC------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGGCACGGGGTGATCACCACCATCTGTGCGGATCCCACTGGCTCCTGGTTGGCCACCGGAACGAGTGGCGGCAAGCATATCTGCTGGGATCTGCGCTTTCGCCTGCCCATTGCCGAGATCAAACATCCGAATGATTCGTGGATACGCAAAGTGGCCTGCCATCCCACGGAACCCTCGTATCTGATCTCCGCCTCGCAGTCAAACAATGAGGTTTCGGTGTG---------GAATATCGAGACGGGTCA--ACGGCAGACTGTCTTGTGGGCCAGTCCAGT----------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CGTCATGGAGTGATCACCACAATTTGTGCGGATCCAACTGGTTCTTGGTTAGCCACCGGCACTAGTGGTGGTAAACACATCTGCTGGGATCTACGCTTCCGTCTGCCCATAGCTGAAATCAAGCATCCAGCTGATTCGTGGATACGCAAGGTGGCCTGTCATCCAACGGAGCCTTCGTATCTGATCTCAGCCTCGCAGTCGAACAACGAGGTGTCCGTATG---------GAATATCGAAACGGGACA--GCGGCAGACGGTCTTGTGGGCAAGTCCGAT----------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CGTCATGGGGTGATCACAACGATCTGTGCGGATCCAACGGGATCTTGGCTGGCCACCGGTACCAGCGGCGGTAAGCACATCTGCTGGGATCTACGCTTCCGTCTGCCCATTGCGGAAATCAAGCATCCGGCGGATTCGTGGATACGCAAGGTGGCCTGCCATCCCACAGAGCCTTCATACCTGATCTCAGCCTCGCAGTCAAACAATGAGGTATCCGTGTG---------GAATATAGAAACGGGACA--GCGCCAGACGGTTTTGTGGGCAAGTCCGGT----------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................ATCTGTGCGGATCCAACGGGA......................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................AATGAGGTATCCGTGTG---------GAATAT....................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................AATGAGGTATCCGTGTG---------GAAT......................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TACCTGATCTCAGCCTCGCAGTC........................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TAAGCACATCTGCTGGGATCT....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CTGCCCATTGCGGAAATCAAGC....................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................ACATCTGCTGGGATCTACGCT...............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................CAAACAATGAGGTATCCGTGTG---------GA........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TCCAACGGGATCTTGGCTGG............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CATCCGGCGGATTCGTGGA..................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TGTG---------GAATATAGAAACGGGACA--GC....................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGTCATGGGGTGATCACAACG...........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................CGTGTG---------GAATATAGAAACG.............................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................AATCAAGCATCCGGCGGATTCGTGGAA.................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CATCCGGCGGATTCGTGG...................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TCATACCTGATCTCAGCCTCGCAGT.........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ATACCTGATCTCAGCCTCGCAGTC........................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TCTGCCCATTGCGGAAATCAAGCATC.................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................TACGCTTCCGTCTGCCCATTGC...............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................ACGGGACA--GCGCCAGACGGTTTTGTGG...................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TGATCTCAGCCTCGCAGTC........................................................................................................................1911.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TGCCCATTGCGGAAATCA.......................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................GCCATCCCACAGAGCCTTCA...............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TATCCGTGTG---------GAATATAG..................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................AAACAATGAGGTATCCGTGTG---------GAATA.....................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................GAGCCTTCATACCTGATCTCAGCCT...............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................CAAACAATGAGGTATCCGTGTG---------GAA.......................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TGGGATCTACGCTTCCGTCTGA......................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TGGGATCTACGCTTCCGTCTGC......................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................CGGCGGATTCGTGGATACGC.............................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GCGCCAGACGGTTTTGTGGGCAAGT.............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................CAATGAGGTATCCGTGTG---------GAATAT....................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................................................................AAGCACATCTGCTGGGATCT....................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................CATTGCGGAAATCAAGCATCCGGCGGA..........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................TGAGGTATCCGTGTG---------GAATATAGA.................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................ACGCTTCCGTCTGCCCATTGCGGAAAT.........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ATTCGTGGATACGCAAGGTGG......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................AAACAATGAGGTATCCGTGTG---------..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................CAATGAGGTATCCGTGTG---------GA........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
......................................................................................................................................................................................................................................................CA--GCGCCAGACGGTTTTGTGGGC.................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGTCATGGGGTGATTACAACGATCTGTGCGGATCCAACTGGATCTTGGCTGGCCACCGGTACCAGCGGCGGTAAGCACATCTGCTGGGATCTACGCTTCCGGCTTCCCATTGCAGAAATAAAACATCCGGCGGATTCGTGGATACGCAAGGTGGCCTGCCATCCCACTGAGCCTTCATACCTGATCTCAGCATCGCAGTCAAACAATGAGGTATCCGTGTG---------GAATATAGAGACGGGACA--GCGCCAGACGGTTTTGTGGGCAAGTCCGGT----------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................TG---------GAATATAGAGACGGGACA--G.....................................................................2112.00200000000000002000
.........................................................................................................................................................................................................................TGTG---------GAATATAGAGACGGGAC.........................................................................2112.00200000000000002000
............ATTACAACGATCTGTGCGGAT...............................................................................................................................................................................................................................................................................................2111.00110000000000000000
.................................................................................................................................................................................................................................................CGGGACA--GCGCCAGACGGTTT........................................................2111.00100000000000001000
.................................CCAACTGGATCTTGGCTGGC...........................................................................................................................................................................................................................................................................2011.00100100000000000000
............ATTACAACGATCTGTGCGGATCC.............................................................................................................................................................................................................................................................................................2311.00101000000000000000
.........................................................................................................................................................................................................................TGTG---------GAATATAGAGACGGGA..........................................................................2011.00100000000000001000
droSec2
CGCCATGGGGTGATCACAACGATCTGTGCAGATCCAACTGGATCTTGGCTGGCCACCGGTACCAGCGGCGGTAAGCACATCTGCTGGGATCTACGCTTCCGGCTTCCCATTGCGGAAATAAAGCATCCGGCGGATTCGTGGATACGCAAGGTGGCCTGCCATCCCACTGAGCCTTCATACCTGATCTCAGCATCGCAGTCAAACAATGAGGTATCCGTGTG---------GAATATAGAGACGGGACA--GCGGCAGACGATTTTGTGGGCAAGTCCGGT----------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................ATAGAGACGGGACA--GCGGCAG...............................................................2111.0010010
...................................................................................................................................................................................................................................................................GATTTTGTGGGCAAGTCCGGT----------------------------------------2111.0010010
droYak3
CGGCATGGGGTGATCACAACGATATGTGCGGATCCAACTGGATCTTGGCTGGCCACCGGTACCAGCGGTGGTAAGCACATCTGCTGGGATCTACGCTTTCGGCTCCCCATTGCGGAAATAAAGCATCCGGCGGATTCGTGGATACGCAAGGTGGCCTGCCATCCCACAGAGCCCTCATACCTGATCTCAGCCTCGCAGTCGAACAACGAGGTATCCGTGTG---------GAACATAGAGACGGGACA--GCGCCAGACTGTTTTGTGGGCCAGTCCGGT----------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................GGTGGTAAGCACATCTGCTGGGAT......................................................................................................................................................................................................................................2411.00100000010000
.................................................................................................................................................................................................CGCAGTCGAACAACGAGGTATCCGTGT....................................................................................................2711.00100000010000
......................................................................GTAAGCACATCTGCTGGGAT......................................................................................................................................................................................................................................2011.00101000000000
droEre2
CGGCATGGGGTGATCACAACGATCTGTGCGGATCCGACTGGATCGTGGCTGGCCACCGGTACCAGCGGTGGTAAACACATCTGTTGGGATCTACGCTTTCGTCTACCCATCGCGGAAATAAAGCATCCAGCGGATTCGTGGATACGCAAGGTGGCCTGCCATCCCACAGAGCCCTCATACTTGATCTCAGCCTCGCAGTCGAACAACGAGGTATCCGTGTG---------GAATATAGAGACGGGACA--GCGCCAGACGGTCTTGTGGGCCAGTCCGGT----------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................ATATAGAGACGGGACA--GC....................................................................1811.0010000100
.....................................................................GGTAAACACATCTGTTGGGATCTACGC................................................................................................................................................................................................................................2711.0010000100
.........GTGATCACAACGATCTGTGC...................................................................................................................................................................................................................................................................................................2011.0011000000
..................................................................................................TCGTCTACCCATCGCGGA............................................................................................................................................................................................................1811.0011000000
.........................................................................................................................................GTGGATACGCAAGGTGGCCTGCC................................................................................................................................................................2311.0011000000
........................................................................................................................................................................................................GAACAACGAGGTATCCGTGTG---------GAAT......................................................................................2511.0010000100
dp5
CGGCACGGGGTCATCACCACAATCTGTGCCGATCCCACCGGCTCTTGGCTGGCTACAGGCACCAGCGGCGGCAAGCATATCTGTTGGGATTTGCGATTCCGTTTGCCCATTGCAGAGATAAAGCACCCGGCAGACTCGTGGATCCGAAAGGTGGCCTGCCATCCCACAGAGCCGTCATATCTGATCTCAGCCTCGCAGTCGAATAACGAAGTGTCCGTGTG---------GAACATCGAGACGGGTCA--ACGACAGACGGTCCTGTGGGCCAGTCCCGCCCCCGTGCTCACC---------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................CA--ACGACAGACGGTCCTGTGGGCCA...............................................2512.0020200000000
............................................................................................................................................................................................................AACGAAGTGTCCGTGTG---------GAACATC...................................................................................2411.0010010000000
droPer2
CGGCACGGGGTCATCACCACAATCTGTGCCGATCCCACCGGCTCTTGGCTGGCTACAGGCACCAGCGGCGGCAAGCATATCTGTTGGGATTTGCGATTCCGTTTGCCCATTGCAGAGATAAAGCACCCGGCAGACTCGTGGATCCGAAAGGTGGCCTGCCATCCCACAGAGCCGTCGTATCTGATCTCAGCCTCGCAGTCGAATAACGAGGTGTCCGTGTG---------GAACATCGAGACGGGTCA--ACGACAGACGGTCCTGTGGGCCAGTCCCGCCCCCGTGCTCACCAACACCAGTCTAAATGATCCGGCCACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................GTCCGTGTG---------GAACATCGAG................................................................................1912.002000002
...........................................CTTGGCTGGCTACAGGCACCA................................................................................................................................................................................................................................................................2112.002200000
...............................................................................................................................................................................................................GAGGTGTCCGTGTG---------GAACA.....................................................................................1912.002000002
...........................................CTTGGCTGGCTACAGGCACCC................................................................................................................................................................................................................................................................2111.001100000
......................................................................................................................................................................................................................CCGTGTG---------GAACATCGAGACG.............................................................................2011.001010000
.......................................................................CAAGCATATCTGTTGGGATTTG...................................................................................................................................................................................................................................2211.001000001
..............................................................................................................................................................................................................CGAGGTGTCCGTGTG---------GAAC......................................................................................1911.001010000
droWil2
CGACATGGCGTCATTACTACAATTTGTGCGGATCCAACGGGTTCGTGGTTGGCCACTGGCACCAGCGGCGGCAAGCACATATGCTGGGATTTGCGTTTCCGGCTGCCAATTGCTGAGATTAAGCATCCGGCCGATTCCTGGATTCGCAAAGTGGCATGCCATCCAACGGAGCCTTCTTATTTGATCTCAGCTTCGCAATCCAATAACGAAGTATCGATATG---------GAATATTGAGACTGGTCA--GCGGCAAACAGTACTCTGGGCCAGTCCAGC----------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................AAACAGTACTCTGGGCCA...............................................1812.00220000
...............................................................................................................................................................................................................................................GACTGGTCA--GCGGCAAACA............................................................1911.00100010
...........................................................................................................................................................................................................................................TTGAGACTGGTCA--GCGGCAAACAGTACT.......................................................2811.00110000
..................................................................................................................................................................................................................GTATCGATATG---------GAATATTGAGACTGGT..........................................................................2711.00100010
......................................................................................................................................................................................................................................GAATATTGAGACTGGTCA--GC....................................................................2011.00101000
droVir3
CGTCATGGTGTCATCACCACCATTTGTGCGGATCCAACGGGCTCTTGGCTGGCAACGGGCACCAGTGGTGGCAAGCATATCTGCTGGGACTTGCGTTTCCGACTGCCTATAACCGAGATTAAGCATCCGGCGGACTCGTGGATAAGAAAAGTGGCCTGCCATCCAACGGAGCCATCATATCTGATCTCCGCCTCGCAGTCCAATAATGAAGTATCTGTATG---------GAACATTGAGACGGGTCA--ACGACAAACTGTGCTTTGGGCCAGCCCAGCACCCGTTCTGACCAATACCAGTCTCAATGATCC-------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................GCCAGCCCAGCACCCGTTCTGACC...........................2412.002000000000000000000000000000000000000000000000000000000000000002
.....................................................................................................................................................................................TGATCTCCGCCTCGCAGTCCAAT....................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CA--ACGACAAACTGTGCTTTG....................................................2011.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................GATTAAGCATCCGGCGGACTC.......................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................GCTGGGACTTGCGTTTCC............................................................................................................................................................................................................................1811.001000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................GTGGATAAGAAAAGTGGCCTGCC................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................GAACATTGAGACGGGTCA--AC....................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GAAGTATCTGTATG---------GAACATTGA.................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................CTATAACCGAGATTAAGCATCC................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CATCCGGCGGACTCGTGGAT.................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................ACTGTGCTTTGGGCCAGCCCAGCACCC....................................2711.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................CTGATCTCCGCCTCGCAGTCCAATA...................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................CTTGCGTTTCCGACTGCCTATAAC...............................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
CGCCATGGCGTTATTACCACCATCTGTGCAGACCCAACTGGCTCCTGGCTGGCAACGGGCACCAGTGGTGGCAAACATATCTGCTGGGACCTGCGTTTCCGACTACCCATAACTGAGATAAAGCATCCAGCTGATTCTTGGATTAGAAAAGTTGCCTGCCATCCGACAGAGCCATCATATCTAATCTCAGCATCGCAGTCCAATAACGAGGTATCGGTTTG---------GAATATTGAGACCAGTCA--ACGACAAACAGTGCTGTGGGCGAGTCCAGCGCCCGTCTTAACCAATACCACTCAAAATGATCCAGCCAC-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................ATCTGCTGGGACCTGCGTTTCC............................................................................................................................................................................................................................2211.001100000
................................................................................................................................................................................................................................................ACCAGTCA--ACGACAAACAGTGCG.......................................................2311.001000010
............................................................................ATATCTGCTGGGACCTGCGT................................................................................................................................................................................................................................2011.001100000
droGri2
CGTCACGGCGTAATTACGACCATCTGTGCAGATCCAACGGGCTCGTGGCTGGCAACGGGCACCAGTGGGGGCAAGCACATTTGCTGGGATCTGCGATTTCGGCTGCCCATAACAGAGATTAAGCATCCGGCGGACTCGTGGATAAGGAAAGTCGCCTGCCATCCCACGGAGCCATCGTATTTGATCTCCGCCTCGCAGTCGAACAATGAGGTGTCTGTGTG---------GAACATTGAGACGGGTCA--GCGACAAACGGTGCTCTGGGCCAGTTCGGC----------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................ACGGGCTCGTGGCTGGCAACGGGCACC.................................................................................................................................................................................................................................................................2711.00110

Generated: 05/18/2015 at 05:22 AM