ID:

dan_2758

 Coordinate:

scaffold_13337:20811088-20811238 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.9 -11.9 -11.6 -11.6

Flybase annnotation

exon [dana_GLEANR_10884:2]; CDS [Dana\GF10925-cds]; intron [Dana\GF10925-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACGGATTCCAGCCCCAGGGTGACCATCTGCCCGTTGCCCCATTGCCCCAGTAAGTGCAGTCGCTACCAGCAACTGTAGTCCCTCCGTCAATCCTTCAAAATCCTTTGTTATTTCCCCACACTTTCCTGAAATCGATGACACATTTCGATGGTAAGGAAAAATTTCCTAAGTAAAAAAAAAATAGTTTGTTGAATATATGAAAAATGAATAAGAAATTCGTAAATGTGTTTTATTTTAAAACTGACGCCTA
**************************************************************.................((.(((((((.................(((((((......((......)).....)))))))......)))))..))))********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V055
head
.....................................................................................................................................CGATGACACATTTCGATGGTAAGGA............................................................................................. 25 0 1 25.00 25 15 10 0
.........................................................................................................................................GACACATTTCGATGGTAAGGA............................................................................................. 21 0 1 7.00 7 4 3 0
.....................................................................................................................................CGATGACACATTTCGATGGTAAGG.............................................................................................. 24 0 1 7.00 7 5 2 0
.....................................................................................................................................CTATGACACATTTCGATGGTAAGGA............................................................................................. 25 1 1 7.00 7 7 0 0
..............................................................................................................ATTTCCCCACACTTTCCTGAAAT...................................................................................................................... 23 0 1 6.00 6 6 0 0
..............................................................GCTACCAGCAACTGTAGTCCCTCCGTC.................................................................................................................................................................. 27 0 1 5.00 5 5 0 0
.......................................................................................................................................ATGACACATTTCGATGGTAAGGA............................................................................................. 23 0 1 5.00 5 4 1 0
.....................................................................................................................................CGATGACACATTTCGATG.................................................................................................... 18 0 1 5.00 5 1 4 0
......................................................................................................................................GATGACACATTTCGATGGTAAGGA............................................................................................. 24 0 1 4.00 4 3 1 0
.....................................................................................................................................CGATGACACATTTCGATGGTAAGGAA............................................................................................ 26 0 1 4.00 4 2 2 0
.......................................................................AACTGTAGTCCCTCCGTCAATC.............................................................................................................................................................. 22 0 1 4.00 4 4 0 0
......................................................................................................................................GATGACACATTTCGATGGTAAGGAA............................................................................................ 25 0 1 3.00 3 3 0 0
.............................................................................................................TATTTCCCCACACTTTCCTGAAATC..................................................................................................................... 25 0 1 3.00 3 3 0 0
.....................................................................................................................................CGATGACACATTTCGATGGTAA................................................................................................ 22 0 1 3.00 3 3 0 0
...........................................................................................................GTTATTTCCCCACACTTTCCTGAAAT...................................................................................................................... 26 0 1 3.00 3 3 0 0
....................................................................................................................................TCGATGACACATTTCGATG.................................................................................................... 19 0 1 3.00 3 3 0 0
...........................................................................................................................TTCCTGAAATCGATGACACA............................................................................................................ 20 0 1 2.00 2 1 1 0
....................................................................................................ATCCTTTGTTATTTCCCCACACT................................................................................................................................ 23 0 1 2.00 2 2 0 0
...........................................................................................................................................CACATTTCGATGGTAAGGA............................................................................................. 19 0 1 2.00 2 2 0 0
..............................................................................................................AGTTCCCCACACTTTCCTGAAAT...................................................................................................................... 23 1 1 2.00 2 2 0 0
.......................................................................................................................................ATGACACATTTCGATGGTAAGGAAA........................................................................................... 25 0 1 2.00 2 1 1 0
......................................................GTGCAGTCGCTACCAGCAACT................................................................................................................................................................................ 21 0 1 2.00 2 1 1 0
.....................................................................GCAACTGTAGTCCCTCCGTCA................................................................................................................................................................. 21 0 1 2.00 2 2 0 0
.....................................................................................................................................CGATGACACATTTCGATGGTACGG.............................................................................................. 24 1 1 2.00 2 0 2 0
.............................................................................................CTTCAAAATCCTTTGTTATT.......................................................................................................................................... 20 0 1 2.00 2 2 0 0
..................................................GTAAGTGCAGTCGCTACCAGCAAC................................................................................................................................................................................. 24 0 1 2.00 2 2 0 0
....................................................AAGTGCAGTCGCTACCAGCAACC................................................................................................................................................................................ 23 1 1 2.00 2 2 0 0
..................................................GTAAGTGCAGTCGCTACCAGC.................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0
...........................................................................GGAGTCCCTCCGTCAATCCTTCA......................................................................................................................................................... 23 1 1 2.00 2 2 0 0
.....................................................................GCAACTGTAGTCCCTCCGTC.................................................................................................................................................................. 20 0 1 2.00 2 2 0 0
.....................................................................................................................................CTATGACACATTTCGATGGTAAGG.............................................................................................. 24 1 1 2.00 2 2 0 0
.............................................................................................................TACTTCCCCACACTTTCCTGAAAT...................................................................................................................... 24 1 1 1.00 1 1 0 0
................................................................................................................................................................................................................ATAAGAAATTCGTAAATGTGTTT.................... 23 0 1 1.00 1 0 1 0
.......................................................................................................................................ATCACACATTTCGATGGTAAGGAA............................................................................................ 24 1 1 1.00 1 1 0 0
..................................................GTAAGTGCAGTCGCTACC....................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0
.............................................................CGCTACCAGCAACTGTAGTCCCTCCGTC.................................................................................................................................................................. 28 0 1 1.00 1 1 0 0
.......................................................................................................................................................................................AGTTTGTTGAATATATGAAAAATG............................................ 24 0 1 1.00 1 1 0 0
....CATTCCAGCCCCAGGGTGAC................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0
.............................................................................................CTTCAAAATCCTTTGTTATTTCCCCAC................................................................................................................................... 27 0 1 1.00 1 1 0 0
..............................................................................................................AGTTCCCCACACTTTCCTGAAATC..................................................................................................................... 24 1 1 1.00 1 1 0 0
.......................................................................................................................................TTGACACATTTCGATGGTAAGGA............................................................................................. 23 1 1 1.00 1 1 0 0
......................................................................................................................................GACGACACATTTCGATGGTAAGG.............................................................................................. 23 1 1 1.00 1 1 0 0
..................................................................................................................................................CGATGGGAAGCAAAAATTTCCTAACT............................................................................... 26 3 1 1.00 1 0 1 0
.....................................................................GCAACTGTAGTCCCTCCGTCAATCCTTC.......................................................................................................................................................... 28 0 1 1.00 1 1 0 0
...................................................................................................AATCCTTTGTTATTTCCCCACAC................................................................................................................................. 23 0 1 1.00 1 1 0 0
...............................................................................................................TTTCCCCACACTTTCCTGAAAT...................................................................................................................... 22 0 1 1.00 1 1 0 0
.........................................................................................................................................GGCACATTTCGATGGTAAGGAAA........................................................................................... 23 1 1 1.00 1 1 0 0
..............................................................................GTCCCTCCGTCAATCCTTCAAA....................................................................................................................................................... 22 0 1 1.00 1 1 0 0
.......................................................................................................CTTTGTTATTTCCCCACACT................................................................................................................................ 20 0 1 1.00 1 1 0 0
......................................................................................................................................GATGACACATTTCGATGGTAAGGAAA........................................................................................... 26 0 1 1.00 1 1 0 0
.....................GACCATCTGCCCGTTGCCCCATTGCC............................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0
.....................................................................................................................................CGACGACACATTTCGATGG................................................................................................... 19 1 1 1.00 1 1 0 0
...........................CTGCCCGTTGCCCCATTGCCCCAGTAA..................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0
............................................................................................................................................ACATTTCGATGGTAAGGA............................................................................................. 18 0 1 1.00 1 0 1 0
....................................................................................................................................................................................AATAGTTTGTTGAATATATGA.................................................. 21 0 1 1.00 1 0 1 0
.............................................................CGCTACCAGCAACTGTAGTCCCTCCGT................................................................................................................................................................... 27 0 1 1.00 1 1 0 0
..............................................................GCTACCAGCAACTGTAGTCCCTC...................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
.............................................................CGCTACCAGCAACTGTAGT........................................................................................................................................................................... 19 0 1 1.00 1 0 1 0
.....................................................................................................................................CGATGACACATTTCGATGTTA................................................................................................. 21 1 1 1.00 1 0 1 0
...................................................................................................AATCCTTTGTTATTTCCCCAC................................................................................................................................... 21 0 1 1.00 1 1 0 0
.......................................................................................................................................AGGACACATTTCGATGGTAAGG.............................................................................................. 22 1 1 1.00 1 1 0 0
..............................................................................................................................................AGTTCGATGGTAAGGAAAAATTTCC.................................................................................... 25 1 1 1.00 1 1 0 0
....................................................................................................................................TCCATGACACATTTCGATGGTAAGGA............................................................................................. 26 1 1 1.00 1 1 0 0
.....................................................................................................................................CTATGACACATTTCGATGGTAAGGAA............................................................................................ 26 1 1 1.00 1 1 0 0
....................................................................................................................................................................................AATAGTTTGTTGAATATATGAAA................................................ 23 0 1 1.00 1 0 1 0
................................................................................................CAAAATCCTTTGTTATTTCCCCACACT................................................................................................................................ 27 0 1 1.00 1 1 0 0
.ACGGATTCCAGCCCCAGGGCGAC................................................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0
........................................................................................................................................TGGCACGTATCGATGGTAAGGA............................................................................................. 22 3 1 1.00 1 0 1 0
....................................................................................................AGCCTTTGTTATTTCCCCACAC................................................................................................................................. 22 1 1 1.00 1 1 0 0
.....................................................................................................................................CGATGACACATTTCGATGGTAAG............................................................................................... 23 0 1 1.00 1 0 1 0
............................................................................................................................................ACATTTCGATGGTAAGGAAAAATTTCC.................................................................................... 27 0 1 1.00 1 1 0 0
.....................................................................................................................................CTATGACACATTTCGATGGTAAGGAAAA.......................................................................................... 28 1 1 1.00 1 1 0 0
....................................................................................................ATCCTTTGTTATTTCCCCACACC................................................................................................................................ 23 1 1 1.00 1 1 0 0
....................................................................................................ATCCTTTGTTATTTCCCCACAC................................................................................................................................. 22 0 1 1.00 1 1 0 0
................................................................................................................................................................................AAAAAATAGTTTGTTGAAT........................................................ 19 0 1 1.00 1 1 0 0
.....................................................................................................................................CGATGACACATTTCGATGGTAAGGAAAA.......................................................................................... 28 0 1 1.00 1 1 0 0
.................................................AGTAAGTGCAGTCGCTACCAGC.................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0
...................................................................CAGCAACTGTAGTCCCTCCGTCAATC.............................................................................................................................................................. 26 0 1 1.00 1 1 0 0
..............................................................................................................AGTTCCCAACACTTTCCTGAAAT...................................................................................................................... 23 2 1 1.00 1 1 0 0
.....................................................................................................................................CGATGACACATTTCGATGGTAATGA............................................................................................. 25 1 1 1.00 1 0 1 0
.................................GGTGCCCCATTGCCCCAGTAAGTGCAGTC............................................................................................................................................................................................. 29 1 1 1.00 1 1 0 0
...........................................................................GTAGTCCCTCCGTCAATCCTTC.......................................................................................................................................................... 22 0 1 1.00 1 1 0 0
......................................................................................GGCAATCCTTCAAAATCCTTTGT.............................................................................................................................................. 23 1 1 1.00 1 1 0 0
.....................................................................................................................................CTACGACACATTTCGATGGTAA................................................................................................ 22 2 1 1.00 1 1 0 0
.....................................................................................................................................CGATGACACATTTCGATGGT.................................................................................................. 20 0 1 1.00 1 1 0 0
...................................................................................................AATCCTTTGTTATTTCCCCACACT................................................................................................................................ 24 0 1 1.00 1 1 0 0
...........................................................GTCGCTACCAGCAACTGTAGTCCCTCC..................................................................................................................................................................... 27 0 1 1.00 1 1 0 0
......................................................GTGCAGTCGCTACCAGCAA.................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0
.......................................................................................................................................ATGACGCATTTCGATGGTAAGGAAA........................................................................................... 25 1 1 1.00 1 0 1 0
......................................................................CAACTGTAGTCCCTCCGTC.................................................................................................................................................................. 19 0 1 1.00 1 1 0 0
...............................................................................................................................................TGTCGATGGTAAGGAAAAATTTCC.................................................................................... 24 1 1 1.00 1 1 0 0
..................................................................................................................................................................................AAAATAGTTTGTTGAATATAT.................................................... 21 0 1 1.00 1 1 0 0
..............................................................................................TTCAAAATCCTTTGTTATTT......................................................................................................................................... 20 0 1 1.00 1 1 0 0
..............................................................................GGCCCTCCGTCAATCCTTCAA........................................................................................................................................................ 21 1 1 1.00 1 1 0 0
................................CGTTGCCCCATTGCCCCAGTA...................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0
...............................................................................................................TTTCCCCACACTTTCCTGAAATC..................................................................................................................... 23 0 1 1.00 1 1 0 0
................................................CAGTAAGTGCAGTCGCTACCAG..................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0
..............................................................................................................AGTTCCCCACACTTTCCTG.......................................................................................................................... 19 1 1 1.00 1 1 0 0
.......................................................................................................................................AGGACACATTTCGATGGTAAGGA............................................................................................. 23 1 1 1.00 1 1 0 0
...................................................................................................................................ATCGATGACACATTTCGATGGTAAGG.............................................................................................. 26 0 1 1.00 1 1 0 0
......................................................................................................................................GATGACACATTTCGATGGTAAGG.............................................................................................. 23 0 1 1.00 1 1 0 0
.......................................................................................................................................ATCACACATTTCGATGGTAAGG.............................................................................................. 22 1 1 1.00 1 1 0 0
................................................................................................................TTCCCCACACTTTCCTGAAATC..................................................................................................................... 22 0 1 1.00 1 1 0 0
......................................................GTGCAGTCGCTACCAGCAACC................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0
....................................................................................................ATCCTTTGTTATTTCCCCACACTTTCC............................................................................................................................ 27 0 1 1.00 1 1 0 0
.................................................AGTAAGTGCAGTCGCTACCAAC.................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0
.......................................................................................................................................ATGACACATTTCGATGGTAAGG.............................................................................................. 22 0 1 1.00 1 1 0 0
......................................................................................................................................GGTGACACATTTCGATGGTAAGGA............................................................................................. 24 1 1 1.00 1 1 0 0
.........................................................................................................................CTTTCCTGAAATCGATGAC............................................................................................................... 19 0 1 1.00 1 1 0 0
..................................................................................................................................................CGATGGTAAGGAAAAATTT...................................................................................... 19 0 1 1.00 1 0 1 0
....................................................................ATCAACTGTAGTCCCTCCGTC.................................................................................................................................................................. 21 1 1 1.00 1 1 0 0
.......................................................................................................................................ATGACACATTTCGATGGTAA................................................................................................ 20 0 1 1.00 1 0 1 0
..............................................................................................................ATTTCCCCACACTTTCCTGAAATC..................................................................................................................... 24 0 1 1.00 1 1 0 0
.....................................................AGTGCAGTCGCTACCAGCAAC................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0
.........................................................................................................................................GACACATTTCGATGGTAAGGAA............................................................................................ 22 0 1 1.00 1 1 0 0
..............................................................................................................................................................AAAATTTCCTAAGTAAAAAA......................................................................... 20 0 1 1.00 1 1 0 0
..........................................................................TTTAGTCCCTCCGTCAATTCTTCAAAAT..................................................................................................................................................... 28 2 1 1.00 1 1 0 0
........................................................................................................................................TGACACATTTCGATGGTAAGGT............................................................................................. 22 1 1 1.00 1 0 1 0
.................................................................................................................................................TCGATGGTAAGGAAAAATTTAC.................................................................................... 22 1 1 1.00 1 0 1 0
..............................................................GCTACCAGCAACTGTAGTCCCTCC..................................................................................................................................................................... 24 0 1 1.00 1 1 0 0
.......................................................................................................................................AGGACACATTTCGACGGTAAGGA............................................................................................. 23 2 1 1.00 1 1 0 0
.............................................................................................................TATTTCCCCACACTTTCCTGAAAT...................................................................................................................... 24 0 1 1.00 1 1 0 0
..............................................................GCTACCAGCAACTGTAGTCCCTCCTC................................................................................................................................................................... 26 2 1 1.00 1 1 0 0
...........GCCCCAGGGTGACCATCTG............................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0
.........................ATCTGCCCGTTGCCCCATTGCC............................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0
...........................................................................................................................TGCTTGAAATCGATGACACAT........................................................................................................... 21 2 1 1.00 1 1 0 0
.........................................................................................................................................GACACATTTCGATGGTAAGG.............................................................................................. 20 0 1 1.00 1 1 0 0
..................GGTGACCATCTGCCCGTTGCCCC.................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0
AACGGATTCCAGCCCCAGGGTGAC................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0
...........................................................................................................GTTATTTCCCCACACTTTCC............................................................................................................................ 20 0 1 1.00 1 1 0 0
........................................................................................CAATCCTTCAAAATCCTTTGTC............................................................................................................................................. 22 1 1 1.00 1 1 0 0
....................................................AAGTGCAGTCGCTACCAGCAA.................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0
.....................................................................................................................................ACATGACACATTTCGATCGTAAGGAAA........................................................................................... 27 3 1 1.00 1 0 1 0
.....................................................................................................................................CGATGACACATTTCGATGGTAAGGAAA........................................................................................... 27 0 1 1.00 1 0 1 0
......................................................GGGCAGTCGCTACCAGCAAC................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0
...................................TGCCTCATTGCCCCAGTAAGTGC................................................................................................................................................................................................. 23 1 1 1.00 1 1 0 0
.....................................................................................................................................CGATGACACATTGCGATG.................................................................................................... 18 1 1 1.00 1 0 1 0
.......................................................................................................................................ATGAGACATGTCGATGGTAAGGA............................................................................................. 23 2 1 1.00 1 0 1 0
................................................................................................CAAAATCCTTTGTTATTTCCC...................................................................................................................................... 21 0 1 1.00 1 1 0 0
....................................GCCCCATTGCCCCAGTAAGT................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
.....................................................................................................................................CGATGACACATTTCGATGG................................................................................................... 19 0 1 1.00 1 0 1 0
........................CATCTGCCCGTTGCCCCATTGCCC........................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0
.........................................................................................AATCCTTCAAAATCCTTTGT.............................................................................................................................................. 20 0 1 1.00 1 1 0 0
....................................................................................................................................TCGATGACACATTTCGATGGTAAGGA............................................................................................. 26 0 1 1.00 1 1 0 0
.....................................................................................................................................CTATGACCCATTTCGAGGGTAAGGA............................................................................................. 25 3 1 1.00 1 1 0 0
........................................................................................CAATCCTTCAAAATCCTTT................................................................................................................................................ 19 0 1 1.00 1 1 0 0
.......................................................................................CCAATCCTTCAAAATCCTTTGC.............................................................................................................................................. 22 2 1 1.00 1 1 0 0
......................................................................................................................................GATGACACATTTCGATGGTAAG............................................................................................... 22 0 1 1.00 1 1 0 0
.........................................................................................................................................GACACATTTCGATGGTAA................................................................................................ 18 0 1 1.00 1 0 1 0
..................................................GGAAGTGCAGTCGCTACCAGC.................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0
..................................................................................................................................................CTATGGTAAGGAAAAATTTCCTAAGT............................................................................... 26 1 1 1.00 1 1 0 0
......................................................................................................CCTTTGTTATTTCCCCACACTTTCCT........................................................................................................................... 26 0 1 1.00 1 1 0 0
.......................................................................AACTGTAGTCCCTCCGTCAAT............................................................................................................................................................... 21 0 1 1.00 1 1 0 0
..........................................................................................................TGTTATTTCCCCACACTTTCCTGAAAT...................................................................................................................... 27 0 1 1.00 1 1 0 0
......................................................................................................................................GATGACACATTTCGAGGG................................................................................................... 18 1 1 1.00 1 0 1 0
..............................................................GCTTCCAGCAACTGTAGTCCCTCCGTC.................................................................................................................................................................. 27 1 1 1.00 1 1 0 0
..........................................................................................................................TTTCCTGAAATCGATGACACATTT......................................................................................................... 24 0 1 1.00 1 1 0 0
.................GGGTGACCATCTGCCCGTTGCCC................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
.....................................................................................................................................CGATGACACATCTCGATGGTAAGGAAA........................................................................................... 27 1 1 1.00 1 1 0 0
.................................................................................................................................................................................AAAAATAGTTTGTTGAATATATGA.................................................. 24 0 1 1.00 1 0 1 0
.ACGGATTCCAGCCCCAGGGTGACC.................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0
...............CAGGGTGACCATCTGCCCGTTGC..................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
...............................................................CTACCAGCAACTGTAGTCCCTCC..................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
...................................................................................................................................................................................................................AGAAATTCGTAAATGTGTT..................... 19 0 1 1.00 1 1 0 0
..................................................................................................AAAACCTTTGTTATTTCCCC..................................................................................................................................... 20 1 1 1.00 1 1 0 0
.....................................................................................................................CACACTTTCCTGAAATCGATGACAC............................................................................................................. 25 0 1 1.00 1 1 0 0
...............................................................................................................................................................................AAAAAAATAGTTTGTTGAATAT...................................................... 22 0 1 1.00 1 1 0 0
.....................................................................................................................................CGATGACCCATTTCGATGGTAAGGAA............................................................................................ 26 1 1 1.00 1 1 0 0
.....................................................................GCAACTGTAGTCCCTCCGTCAATCCTTCA......................................................................................................................................................... 29 0 1 1.00 1 1 0 0
..........................................................................................ATCCTTCAAAATCCTTTGTT............................................................................................................................................. 20 0 1 1.00 1 1 0 0
.........................................AGTGCCCCAGTAAGTGCAGTC............................................................................................................................................................................................. 21 1 2 0.50 1 1 0 0
.................................................................................................................................................................................................ATATATGAAAAATGAATAAGAAAAA................................. 25 2 2 0.50 1 1 0 0
..CGGATTCCAGCCCCAGGG....................................................................................................................................................................................................................................... 18 0 9 0.11 1 1 0 0
.ACGGATTCCAGCCCCAGGGT...................................................................................................................................................................................................................................... 20 0 9 0.11 1 1 0 0
..........AGCTCCAGGGTGACCACC............................................................................................................................................................................................................................... 18 2 14 0.07 1 1 0 0
...........................................................................................................................................AGCATTTCCATGGTAAGGA............................................................................................. 19 3 20 0.05 1 0 0 1
.............................................................................................................................................................TAACATTTCCTAAATAAAAAAAAA...................................................................... 24 3 20 0.05 1 1 0 0
....GATTCTAGCCCTAGCGTG..................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0

Anti-sense strand reads

TTGCCTAAGGTCGGGGTCCCACTGGTAGACGGGCAACGGGGTAACGGGGTCATTCACGTCAGCGATGGTCGTTGACATCAGGGAGGCAGTTAGGAAGTTTTAGGAAACAATAAAGGGGTGTGAAAGGACTTTAGCTACTGTGTAAAGCTACCATTCCTTTTTAAAGGATTCATTTTTTTTTTATCAAACAACTTATATACTTTTTACTTATTCTTTAAGCATTTACACAAAATAAAATTTTGACTGCGGAT
*********************************************************************************************.................((.(((((((.................(((((((......((......)).....)))))))......)))))..))))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V105
male body		 M058
embryo
 V106
head
 M044
female body
.................................................................................GAAGGCAGTTAGGGAGTTT....................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0
................................................................................GGAAGGCAGTTAGGAAATT........................................................................................................................................................ 19 2 4 0.25 1 0 1 0 0 0
................................................................................GGGAGGCAGTTAGGGAGATTC...................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
.............GGGAACCACTGGTACACGGGC......................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 1 0 0
....CTAAGGTCGCGGTCGCAGTG................................................................................................................................................................................................................................... 20 3 11 0.18 2 0 0 0 2 0
............................................................................GTCTGGGAGGCAGTTAGGGA........................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0
................................................................................GGAAGGCAGTTAGGAAAT......................................................................................................................................................... 18 2 12 0.17 2 0 1 0 1 0
..............................................................................CGGGAAGGCAGTTAGGAAATT........................................................................................................................................................ 21 3 6 0.17 1 0 1 0 0 0
..................................................................................................TTCAGGAAACAAGGAAGGGGT.................................................................................................................................... 21 3 8 0.13 1 0 0 1 0 0
................................................................................GGAAGGCAGTTAGGAAATTC....................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 1
CTGGCTAATGTCGGGGTCC........................................................................................................................................................................................................................................ 19 3 20 0.10 2 0 2 0 0 0
...................................................................................................TTACGAAACAAGGAAGGGGT.................................................................................................................................... 20 3 15 0.07 1 0 0 1 0 0
....................................................................TCGTAGACAGCAGGGACGC.................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:20811038-20811288 + dan_2758 AACGGATTCCAGCCCCAGGGTGACCATCTGCCCGTTGCCCC-----ATTGCCCCAGTAAGTGCAGT---CGCTACC-------AGCAACTGTAGTCCCTCCGTC-AATCCTTCAAAATCCTTTGTTATTTCCC-C-ACACTTTCCTGAAA-----TCGATGA-CACA----TTTCG-ATGGTAAGGA-AAAATTTCCTAAGTAAAAAAAAAATAGTTTGTTGAATATATG--AAA--AATGAATAAGAAA---TTCG--TAAATGTGTTTTATTTTAAAA-----CTGACG------------------CCTA
droBip1 scf7180000396707:608679-608936 - AACGGATTCCAGCCCCAGGGTGCCCATCTGCCCGTTGCCCC-----CGAGGCC---TAAGTTCAGT---CGCTTCCAACCA-GAGCAACTGTAGTCCCTCCGTC-AATCCTTCAAAATACCTTGTTATTTCTC-C-TCACTTTCCTGAAA-----TCGATGT-AATA----TGTCG-ATTGAAAGAA-AAAATTTCCTAAGTCAAAGA-AAATAGTTTGTTGAATATATG--AAA--AATGAATAAGTAA---TTCT--TTAATGTGTTTTATTGTAAAATGGCGCTGGCC------------------CTCA
droKik1 scf7180000302334:637046-637285 - AACGGTTTCCAGCCCCAGGGTGCTCATCTGCCCGTTGCCCC-----TGAGGCC---TAAATCAGGT---TGCTTTCCTCTG-GAGCAGCTCTAAATCCA--CCCAAATTCTACTCAATTCCTTGTTATTTTCCCCAAAACTTTCCCGTGT-----CCGTTTT-CCCT----TGGCT-TTGCTAAGGGAACAAACTCCTAAGTCAAAGA-AC---ATTTGTTGAATATTAAAAAAA--AATGAAGAATTTA-----TA--TGAACTTGTTTTATTTTGA-----------------------------------
droFic1 scf7180000453929:1462621-1462853 + AACGGATTCCAGCCCCAGGGTGCTCATTTGCCCGTTGCCCC-----CGAGGCC---TAAGTGGAGC---TGCTCTCATCCAGAGGCAGCTGCAAAGCCA---TC-TATCCTTCAAAACTCCTTGTTAATAACTCCGAACCTTACCAA--ACCGATCCGGTCC---------TT-AT-TTTCAAAGGA-C--GGGAGCTAAGTCAGCCA-ATCCCTTTTGTTAAATATTAA---AAAAAATGA---TTACC---GAAACTTATATGTGTTTTATT---------------------------------------
droEle1 scf7180000491193:931168-931412 - AACGGATTCCAGCCCCAGGGTGCCCATCTGCCCGTTGCCCC-----CGAGGCC---TAAGTTGAGT---TGCATTTATCGA-AAGCAGCTTAAGAGCAA--ATC-AATCCTATACAATTCCTTGTTATTTTCC-CAAAAATTCCCTGCTT-----CCGGTTT-CTC-----TTTTG-TTTTGGAGAG-AAAGTTTCCTAAGTCACAGA-ACCCAAATTGTTGAACATTAA---AA--AATGAAGAATATA---TATA--TGAATACGTTTTATTTAAAAA--GG--------------------------TTT
droRho1 scf7180000777877:14141-14375 - AACGGATTCCAGCCCCAGGGTGCCCATCTGCCCGTTGCCCC-----CGAGGCC---TAAGTGGAGT---TGCTTTCATCCA-AAGCAGCTTTAAAGCCA--ATC-AGTCCTACACAATTCCTTGTTATTTTCCCCAA---TTTCCTACTT-----CCGGTTT-CCC-----TTTCT-TTTTGAAGGG-AAATGTTTCTAAGTCACAGA-ACGCAATTTGTTGAATATTAA----A--AATGAAGAATTTA-----TA--TGAATTGGTTTTATTTGAAAA---------------------------------
droBia1 scf7180000302193:3652662-3652887 - AACGGATTCCAGCCCCAGGGTGCCCATCTGCCCGTTGCCCC-----CGAGGCC---TAAATTGAGT---TGCTTGCACTCA-AAGCAGCTTTAAAGCCA--CCC-AATCCTACACAATTCCTTGTTATTTTCCCCAATACTT-------T-----CCGGTTT-CAC-----TTTC--TTTGAAAGGG-AACCATTTCTAAGTCACAGA-ACGCAATTTGTTGAATATTAA---AA--CTTGAAGATTATA-----TT--TGAATTGGTTTTATTT--------------------------------------
droTak1 scf7180000415809:16307-16543 - AACGGTTTCCAGCCCCAGGGTGCCCATTTGCCCGTTGCCCC-----CGAGGCC---TAAGTTGAGT---TGCTTTCATCCC-GAGCAGCTTTAGAGCCA--ACC-AATTCTACCCAATTCCTTGTTATTTCCCCCAAAACTTTCCCACTT-----CCGGTTT-CCC-----TTTCT-TTTTAAGGGA-AAAAATTCCTAAAGCACAGA-ACGCAATTTGTTGAATATTAA---AA--AATGAAGAATTTA-----TT--TGAATTTGTTTTATTTTAA-----------------------------------
droEug1 scf7180000409466:3901436-3901677 - AACGGATTCCAGCCCCAGGGTGCCCATCTGCCCGTTGCCCC-----CGTGGCC---TAAGTGAAGT---TGCCTTAATCGG-AAGCAGCTGTAAAGCCA--ACC-AATCCTACACAATTCCTTGTTATTTTCCCCAAAACTTCCCAATTT-----CCGAATTTCCC-----TT-CT-TTTGAAAGGA-AATATTTTCCCAGTCACAGA-ACGAAATTTGTTGAATATTAA---AA--AATGAATATTTTA-----TT--TGAATTGGTTTTATTGAAAAA--A----------------------------TG
dm3 chr3L:6123468-6123701 - AACGGATTCCAGCCCGAGGGTGCTCATCTGCCCGTTGCCCC-----CGTGGCA---TAAGTGAAGT---TGCTTTCACTGT-AAGCAGCTTTAAACCCA---CC-AATTCTGCAACACTCTTTGTTATCTTCCCCAACACTTACCTACTT-----TCGGTTT-TCCC----T-----TTTAAAAGGG-AAAGAATCCTAAGTTACAGA-ACGCAGTTTGTTGAATATTAA---AA--AATGTAGATTTTA-----TA--TGAATTCGTTTTATTTTAAA----------------------------------
droSim2 3l:6032756-6032992 - AACGGATTCCAGCCCCAGGGTGCTCATCTGCCCGTTGCCCC-----CGTGGCC---TAATTGAAGTTGTTGCATACACCGT-AAGCACCTTTAAAGCCC--ACC-AGTCCTGCAAAACTCTTTGTTATCTTCCCCAACACTTACCTACTT-----CCGGTTT-CCC-----TT-----TTTAAAGGG-AAAGAATCCTTAGTTACAGA-ACGCAGTTTGTTGAATATTAA---AG--AATGTAGATTTTA-----TA--TGAATTCGTTTTATTTTAAA----------------------------------
droSec2 scaffold_2:6071173-6071409 - AACGGATTCCAGCCCCAGGGTGCTCATCTGCCCGTTGCCCC-----CGTGGCC---TAAGTGAAGTTGTTGCATACACCGT-AAGCAGCTTTAAAGCCC--ACC-AGTCCTGCAAAACTCTTTTTTATCTTCCCCAACACTTACCTACTT-----CCGGTTT-CCC-----TT-----TTTAAAGGG-AAAGAATCCTTAGTTACAGA-ACGCAGTTTGTTGAATATTAA---AG--AATGTAGATTTTA-----TA--TGAATTCGTTTTATTTTAAA----------------------------------
droYak3 3L:6707319-6707557 - AACGGATTCCAGCCCCAGGGTGCTCATCTGCCCGTTGCCCC-----TGAGGCC---TAAGTGAAGT---TGGTTTTACAGT-CAGCTGCTTTTAAGCCA--GCC-AGTCCTACAAAACTCTTTGTTATT---CCCAACTTTTACCTACAT-----CCGGTTT-TCC-----TT----TTTTAAAGGA-AAGAATTCCTAAGTTACAGA-ACGCAGTTTGTTGAATATTAAA--AA--AATGTAGATTTTACTATATA--TGAATTCGTTTTATTGCCAAA---------------------------------
droEre2 scaffold_4784:8821892-8822155 - AACGGATTCCAGCCCCAGGGTGCTCATCTGCCCGTTGCCCC-----CTAGGCC---TAAGCGAAGT---TCGTTTCTGCGT-AAGCATCTTTAAAGCCG--GCC-AGTCCTACAAAACTCTTTGTTATA---CCCAACATGTACTTACAT-----CCGGTTT-CCC-----GC----TTTAAAAGGG-AAAAATTCCTAAGTTGCAGA-ACCCACTTTGTTGAATATAAA---AA--AACGTAGATTTTA-----TA--TGAATTCGTTTTATTGCAAG--TGTTTTTTCTCAAAAGGTCGGATTGAAACCAA
dp5 XR_group6:9543388-9543621 + AACGGTTTCCAGCCCTCGGGCGCTCATCTGCCCGTGGCCCC-----TGAGGCT---TAAGTTGAGT---TGCTTCCATCGC-AAGCAGCTTGAACGCCA--TCG-AGTC----------CCTTGTTACTTTCCCCAG------------A-----CCGATTT-CCCAAACCTTTT--ATTCAAAAGG-AAAAGGATCTTAGTCAAAAG-CCCTAGTTTGTTAAATATTAAAGAAA--AATGA---GTACA---TAAAC-AAAATTTGTTTCGCAAT-----TACACTTCCT------------------CCAG
droPer2 scaffold_35:181093-181325 - AACGGTTTCCAGCCCTCGGGCGCTCATCTGCCCGTGGCCCC-----TGAGGCT---TAAGTTGAGT---TGCTTCCTTCGC-AAGCAGCTTGAAAGCCA--TCG-AGTC----------CCTTGTTACTTTCCCCAG------------A-----CCGATTT-CCCAAACCTTTT--ATTCAAAAGG-AAAAGGATCTTAGTCAAAAG-CCCTAGTTTGTTAAATATTAAAGAAA--AATGA---GTACA---TAAA--CAAATTTGTTTCGCAAT-----TACACTTCCT------------------CCAG
droWil2 scf2_1100000004511:3441038-3441085 + AACGGTTTCCAACCTGAGGGTGCTCATTTGCCCAATGTGCC-----AATTGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_10324:321334-321420 - AATGGCTTCCGCGCCGAGGGTGCACATATTCCCACACCGCCGCCCGTGAGCCC----------GGC---CG-------------------------------------------------------------------------CCGCTG-----CCGGTCC-CCG-----CCGATTCTTC-----------------------------------------------------------------------------------------------AAA----------------------------------
droMoj3 scaffold_6496:11784397-11784455 - AACGGCTTCCAGCCCGAGGGCGATCATCTGCCCGTTGCGCC-----G----CA---ATAGTTGCGT---TTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:15295868-15295951 + AATGGCTTCCGTGCCGAGGGCGCCCATATTCCCACACCCCC-----GCCCG-----TCAGCCCCGC---CGCC----------------------------------------------------------------------------G-----CCGCTCC-CCG-----CCGATTCTTC-----------------------------------------------------------------------------------------------AAA----------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AACGGATTCCAGCCCCAGGGTGACCATCTGCCCGTTGCCCC-----ATTGCCCCAGTAAGTGCAGT---CGCTACC-------AGCAACTGTAGTCCCTCCGTC-AATCCTTCAAAATCCTTTGTTATTTCCC-C-ACACTTTCCTGAAA-----TCGATGA-CACA----TTTCG-ATGGTAAGGA-AAAATTTCCTAAGTAAAAAAAAAATAGTTTGTTGAATATATG--AAA--AATGAATAAGAAA---TTCG--TAAATGTGTTTTATTTTAAAA-----CTGACG------------------CCTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................CGATGA-CACA----TTTCG-ATGGTAAGGA-.............................................................................................................................25125.002501510000
................................................................................................................................................................GA-CACA----TTTCG-ATGGTAAGGA-.............................................................................................................................2117.007043000
............................................................................................................................................................CGATGA-CACA----TTTCG-ATGGTAAGG...............................................................................................................................2417.007052000
..............................................................................................................................ATTTCCC-C-ACACTTTCCTGAAA-----T.............................................................................................................................................................2316.006060000
......................................................................GCTACC-------AGCAACTGTAGTCCCTCCGTC-................................................................................................................................................................................................................2715.005050000
..............................................................................................................................................................ATGA-CACA----TTTCG-ATGGTAAGGA-.............................................................................................................................2315.005041000
............................................................................................................................................................CGATGA-CACA----TTTCG-ATG.....................................................................................................................................1815.005014000
.............................................................................................................................................................GATGA-CACA----TTTCG-ATGGTAAGGA-.............................................................................................................................2414.004031000
............................................................................................................................................................CGATGA-CACA----TTTCG-ATGGTAAGGA-A............................................................................................................................2614.004022000
......................................................................................AACTGTAGTCCCTCCGTC-AATC............................................................................................................................................................................................................2214.004040000
.............................................................................................................................................................GATGA-CACA----TTTCG-ATGGTAAGGA-A............................................................................................................................2513.003030000
.............................................................................................................................TATTTCCC-C-ACACTTTCCTGAAA-----TC............................................................................................................................................................2513.003030000
............................................................................................................................................................CGATGA-CACA----TTTCG-ATGGTAA.................................................................................................................................2213.003030000
...........................................................................................................................GTTATTTCCC-C-ACACTTTCCTGAAA-----T.............................................................................................................................................................2613.003030000
...........................................................................................................................................................TCGATGA-CACA----TTTCG-ATG.....................................................................................................................................1913.003030000
.............................................................................................................................................TTCCTGAAA-----TCGATGA-CACA----..............................................................................................................................................2012.002011000
....................................................................................................................ATCCTTTGTTATTTCCC-C-ACACT............................................................................................................................................................................2312.002020000
...................................................................................................................................................................CACA----TTTCG-ATGGTAAGGA-.............................................................................................................................1912.002020000
..............................................................................................................................................................ATGA-CACA----TTTCG-ATGGTAAGGA-AA...........................................................................................................................2512.002011000
...........................................................GTGCAGT---CGCTACC-------AGCAACT...............................................................................................................................................................................................................................2112.002011000
....................................................................................GCAACTGTAGTCCCTCCGTC-A...............................................................................................................................................................................................................2112.002020000
.............................................................................................................CTTCAAAATCCTTTGTTATT........................................................................................................................................................................................2012.002020000
.......................................................GTAAGTGCAGT---CGCTACC-------AGCAAC................................................................................................................................................................................................................................2412.002020000
.........................................................AAGTGCAGT---CGCTACC-------AGCAACC...............................................................................................................................................................................................................................2312.002020000
.......................................................GTAAGTGCAGT---CGCTACC-------AGC...................................................................................................................................................................................................................................2112.002020000
....................................................................................GCAACTGTAGTCCCTCCGTC-................................................................................................................................................................................................................2012.002020000
..................................................................................................................................................................................................................................................ATAAGAAA---TTCG--TAAATGTGTTT...........................................2311.001001000
.......................................................GTAAGTGCAGT---CGCTACC-------......................................................................................................................................................................................................................................1811.001010000
.....................................................................CGCTACC-------AGCAACTGTAGTCCCTCCGTC-................................................................................................................................................................................................................2811.001010000
.....................................................................................................................................................................................................................AGTTTGTTGAATATATG--AAA--AATG........................................................................2411.001010000
.............................................................................................................CTTCAAAATCCTTTGTTATTTCCC-C-AC...............................................................................................................................................................................2711.001010000
....................................................................................GCAACTGTAGTCCCTCCGTC-AATCCTTC........................................................................................................................................................................................................2811.001010000
...................................................................................................................AATCCTTTGTTATTTCCC-C-ACAC.............................................................................................................................................................................2311.001010000
...............................................................................................................................TTTCCC-C-ACACTTTCCTGAAA-----T.............................................................................................................................................................2211.001010000
.............................................................................................GTCCCTCCGTC-AATCCTTCAAA.....................................................................................................................................................................................................2211.001010000
.......................................................................................................................CTTTGTTATTTCCC-C-ACACT............................................................................................................................................................................2011.001010000
.............................................................................................................................................................GATGA-CACA----TTTCG-ATGGTAAGGA-AA...........................................................................................................................2611.001010000
.....................GACCATCTGCCCGTTGCCCC-----ATTGCC.....................................................................................................................................................................................................................................................................2611.001010000
...........................CTGCCCGTTGCCCC-----ATTGCCCCAGTAA..............................................................................................................................................................................................................................................................2711.001010000
....................................................................................................................................................................ACA----TTTCG-ATGGTAAGGA-.............................................................................................................................1811.001001000
..................................................................................................................................................................................................................AATAGTTTGTTGAATATATG--A................................................................................2111.001001000
.....................................................................CGCTACC-------AGCAACTGTAGTCCCTCCGT..................................................................................................................................................................................................................2711.001010000
......................................................................GCTACC-------AGCAACTGTAGTCCCTC.....................................................................................................................................................................................................................2311.001010000
.....................................................................CGCTACC-------AGCAACTGTAGT..........................................................................................................................................................................................................................1911.001001000
...................................................................................................................AATCCTTTGTTATTTCCC-C-AC...............................................................................................................................................................................2111.001010000
..................................................................................................................................................................................................................AATAGTTTGTTGAATATATG--AAA--............................................................................2311.001001000
................................................................................................................CAAAATCCTTTGTTATTTCCC-C-ACACT............................................................................................................................................................................2711.001010000
............................................................................................................................................................CGATGA-CACA----TTTCG-ATGGTAAG................................................................................................................................2311.001001000
....................................................................................................................................................................ACA----TTTCG-ATGGTAAGGA-AAAATTTCC....................................................................................................................2711.001010000
....................................................................................................................ATCCTTTGTTATTTCCC-C-ACACC............................................................................................................................................................................2311.001010000
....................................................................................................................ATCCTTTGTTATTTCCC-C-ACAC.............................................................................................................................................................................2211.001010000
..............................................................................................................................................................................................................AAAAAATAGTTTGTTGAAT........................................................................................1911.001010000
............................................................................................................................................................CGATGA-CACA----TTTCG-ATGGTAAGGA-AAA..........................................................................................................................2811.001010000
......................................................AGTAAGTGCAGT---CGCTACC-------AGC...................................................................................................................................................................................................................................2211.001010000
...........................................................................C-------AGCAACTGTAGTCCCTCCGTC-AATC............................................................................................................................................................................................................2611.001010000
..........................................................................................GTAGTCCCTCCGTC-AATCCTTC........................................................................................................................................................................................................2211.001010000
............................................................................................................................................................CGATGA-CACA----TTTCG-ATGGT...................................................................................................................................2011.001010000
...................................................................................................................AATCCTTTGTTATTTCCC-C-ACACT............................................................................................................................................................................2411.001010000
................................................................GT---CGCTACC-------AGCAACTGTAGTCCCTCC....................................................................................................................................................................................................................2711.001010000
...........................................................GTGCAGT---CGCTACC-------AGCAA.................................................................................................................................................................................................................................1911.001001000
.....................................................................................CAACTGTAGTCCCTCCGTC-................................................................................................................................................................................................................1911.001010000
................................................................................................................................................................................................................AAAATAGTTTGTTGAATATAT....................................................................................2111.001010000
..............................................................................................................TTCAAAATCCTTTGTTATTT.......................................................................................................................................................................................2011.001010000
................................CGTTGCCCC-----ATTGCCCCAGTA...............................................................................................................................................................................................................................................................2111.001001000
...............................................................................................................................TTTCCC-C-ACACTTTCCTGAAA-----TC............................................................................................................................................................2311.001010000
.....................................................CAGTAAGTGCAGT---CGCTACC-------AG....................................................................................................................................................................................................................................2211.001010000
.....................................................................................................................................................A-----TCGATGA-CACA----TTTCG-ATGGTAAGG...............................................................................................................................2611.001010000
.............................................................................................................................................................GATGA-CACA----TTTCG-ATGGTAAGG...............................................................................................................................2311.001010000
................................................................................................................................TTCCC-C-ACACTTTCCTGAAA-----TC............................................................................................................................................................2211.001010000
...........................................................GTGCAGT---CGCTACC-------AGCAACC...............................................................................................................................................................................................................................2111.001010000
....................................................................................................................ATCCTTTGTTATTTCCC-C-ACACTTTCC........................................................................................................................................................................2711.001010000
..............................................................................................................................................................ATGA-CACA----TTTCG-ATGGTAAGG...............................................................................................................................2211.001010000
...........................................................................................................................................CTTTCCTGAAA-----TCGATGA-C.....................................................................................................................................................1911.001010000
..............................................................................................................................................................................CG-ATGGTAAGGA-AAAATTT......................................................................................................................1911.001001000
..............................................................................................................................................................ATGA-CACA----TTTCG-ATGGTAA.................................................................................................................................2011.001001000
..............................................................................................................................ATTTCCC-C-ACACTTTCCTGAAA-----TC............................................................................................................................................................2411.001010000
..........................................................AGTGCAGT---CGCTACC-------AGCAAC................................................................................................................................................................................................................................2111.001010000
................................................................................................................................................................GA-CACA----TTTCG-ATGGTAAGGA-A............................................................................................................................2211.001010000
............................................................................................................................................................................................AAAATTTCCTAAGTAAAAAA.........................................................................................................2011.001010000
...............................................................................................................................................................TGA-CACA----TTTCG-ATGGTAAGGT-.............................................................................................................................2211.001001000
......................................................................GCTACC-------AGCAACTGTAGTCCCTCC....................................................................................................................................................................................................................2411.001010000
.............................................................................................................................TATTTCCC-C-ACACTTTCCTGAAA-----T.............................................................................................................................................................2411.001010000
......................................................................GCTACC-------AGCAACTGTAGTCCCTCCTC..................................................................................................................................................................................................................2611.001010000
...........GCCCCAGGGTGACCATCTG...........................................................................................................................................................................................................................................................................................1911.001010000
.........................ATCTGCCCGTTGCCCC-----ATTGCC.....................................................................................................................................................................................................................................................................2211.001010000
................................................................................................................................................................GA-CACA----TTTCG-ATGGTAAGG...............................................................................................................................2011.001010000
..................GGTGACCATCTGCCCGTTGCCCC-----...........................................................................................................................................................................................................................................................................2311.001010000
AACGGATTCCAGCCCCAGGGTGAC.................................................................................................................................................................................................................................................................................................2411.001010000
...........................................................................................................................GTTATTTCCC-C-ACACTTTCC........................................................................................................................................................................2011.001010000
.......................................................................................................C-AATCCTTCAAAATCCTTTGTC...........................................................................................................................................................................................2211.001010000
.........................................................AAGTGCAGT---CGCTACC-------AGCAA.................................................................................................................................................................................................................................2111.001001000
............................................................................................................................................................CGATGA-CACA----TTTCG-ATGGTAAGGA-AA...........................................................................................................................2711.001001000
................................................................................................................CAAAATCCTTTGTTATTTCCC-...................................................................................................................................................................................2111.001010000
....................................GCCCC-----ATTGCCCCAGTAAGT............................................................................................................................................................................................................................................................2011.001010000
............................................................................................................................................................CGATGA-CACA----TTTCG-ATGG....................................................................................................................................1911.001001000
........................CATCTGCCCGTTGCCCC-----ATTGCCC....................................................................................................................................................................................................................................................................2411.001010000
.........................................................................................................AATCCTTCAAAATCCTTTGT............................................................................................................................................................................................2011.001010000
...........................................................................................................................................................TCGATGA-CACA----TTTCG-ATGGTAAGGA-.............................................................................................................................2611.001010000
.......................................................................................................C-AATCCTTCAAAATCCTTT..............................................................................................................................................................................................1911.001010000
.............................................................................................................................................................GATGA-CACA----TTTCG-ATGGTAAG................................................................................................................................2211.001010000
................................................................................................................................................................GA-CACA----TTTCG-ATGGTAA.................................................................................................................................1811.001001000
......................................................................................................................CCTTTGTTATTTCCC-C-ACACTTTCCT.......................................................................................................................................................................2611.001010000
......................................................................................AACTGTAGTCCCTCCGTC-AAT.............................................................................................................................................................................................................2111.001010000
..........................................................................................................................TGTTATTTCCC-C-ACACTTTCCTGAAA-----T.............................................................................................................................................................2711.001010000
............................................................................................................................................TTTCCTGAAA-----TCGATGA-CACA----TTT...........................................................................................................................................2411.001010000
.................GGGTGACCATCTGCCCGTTGCCC.................................................................................................................................................................................................................................................................................2311.001010000
...............................................................................................................................................................................................................AAAAATAGTTTGTTGAATATATG--A................................................................................2411.001001000
.ACGGATTCCAGCCCCAGGGTGACC................................................................................................................................................................................................................................................................................................2411.001010000
...............CAGGGTGACCATCTGCCCGTTGC...................................................................................................................................................................................................................................................................................2311.001010000
.......................................................................CTACC-------AGCAACTGTAGTCCCTCC....................................................................................................................................................................................................................2311.001010000
.....................................................................................................................................................................................................................................................AGAAA---TTCG--TAAATGTGTT............................................1911.001010000
......................................................................................................................................C-ACACTTTCCTGAAA-----TCGATGA-CAC...................................................................................................................................................2511.001010000
.............................................................................................................................................................................................................AAAAAAATAGTTTGTTGAATAT......................................................................................2211.001010000
....................................................................................GCAACTGTAGTCCCTCCGTC-AATCCTTCA.......................................................................................................................................................................................................2911.001010000
..........................................................................................................ATCCTTCAAAATCCTTTGTT...........................................................................................................................................................................................2011.001010000
...............................................................................................................................................................................................................................ATATATG--AAA--AATGAATAAGAAA---AA..........................................................2520.501010000
..CGGATTCCAGCCCCAGGG.....................................................................................................................................................................................................................................................................................................1890.111010000
.ACGGATTCCAGCCCCAGGGT....................................................................................................................................................................................................................................................................................................2090.111010000
droBip1
AACGGATTCCAGCCCCAGGGTGCCCATCTGCCCGTTGCCCC-----CGAGGCC---TAAGTTCAGT---CGCTTCCAACCA-GAGCAACTGTAGTCCCTCCGTC-AATCCTTCAAAATACCTTGTTATTTCTC-C-TCACTTTCCTGAAA-----TCGATGT-AATA----TGTCG-ATTGAAAGAA-AAAATTTCCTAAGTCAAAGA-AAATAGTTTGTTGAATATATG--AAA--AATGAATAAGTAA---TTCT--TTAATGTGTTTTATTGTAAAATGGCGCTGGCC------------------CTCASizeHit CountTotal NormTotal
No Reads
droKik1
AACGGTTTCCAGCCCCAGGGTGCTCATCTGCCCGTTGCCCC-----TGAGGCC---TAAATCAGGT---TGCTTTCCTCTG-GAGCAGCTCTAAATCCA--CCCAAATTCTACTCAATTCCTTGTTATTTTCCCCAAAACTTTCCCGTGT-----CCGTTTT-CCCT----TGGCT-TTGCTAAGGGAACAAACTCCTAAGTCAAAGA-AC---ATTTGTTGAATATTAAAAAAA--AATGAAGAATTTA-----TA--TGAACTTGTTTTATTTTGA-----------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AACGGATTCCAGCCCCAGGGTGCTCATTTGCCCGTTGCCCC-----CGAGGCC---TAAGTGGAGC---TGCTCTCATCCAGAGGCAGCTGCAAAGCCA---TC-TATCCTTCAAAACTCCTTGTTAATAACTCCGAACCTTACCAA--ACCGATCCGGTCC---------TT-AT-TTTCAAAGGA-C--GGGAGCTAAGTCAGCCA-ATCCCTTTTGTTAAATATTAA---AAAAAATGA---TTACC---GAAACTTATATGTGTTTTATT---------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AACGGATTCCAGCCCCAGGGTGCCCATCTGCCCGTTGCCCC-----CGAGGCC---TAAGTTGAGT---TGCATTTATCGA-AAGCAGCTTAAGAGCAA--ATC-AATCCTATACAATTCCTTGTTATTTTCC-CAAAAATTCCCTGCTT-----CCGGTTT-CTC-----TTTTG-TTTTGGAGAG-AAAGTTTCCTAAGTCACAGA-ACCCAAATTGTTGAACATTAA---AA--AATGAAGAATATA---TATA--TGAATACGTTTTATTTAAAAA--GG--------------------------TTTSizeHit CountTotal NormTotal
No Reads
droRho1
AACGGATTCCAGCCCCAGGGTGCCCATCTGCCCGTTGCCCC-----CGAGGCC---TAAGTGGAGT---TGCTTTCATCCA-AAGCAGCTTTAAAGCCA--ATC-AGTCCTACACAATTCCTTGTTATTTTCCCCAA---TTTCCTACTT-----CCGGTTT-CCC-----TTTCT-TTTTGAAGGG-AAATGTTTCTAAGTCACAGA-ACGCAATTTGTTGAATATTAA----A--AATGAAGAATTTA-----TA--TGAATTGGTTTTATTTGAAAA---------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AACGGATTCCAGCCCCAGGGTGCCCATCTGCCCGTTGCCCC-----CGAGGCC---TAAATTGAGT---TGCTTGCACTCA-AAGCAGCTTTAAAGCCA--CCC-AATCCTACACAATTCCTTGTTATTTTCCCCAATACTT-------T-----CCGGTTT-CAC-----TTTC--TTTGAAAGGG-AACCATTTCTAAGTCACAGA-ACGCAATTTGTTGAATATTAA---AA--CTTGAAGATTATA-----TT--TGAATTGGTTTTATTT--------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AACGGTTTCCAGCCCCAGGGTGCCCATTTGCCCGTTGCCCC-----CGAGGCC---TAAGTTGAGT---TGCTTTCATCCC-GAGCAGCTTTAGAGCCA--ACC-AATTCTACCCAATTCCTTGTTATTTCCCCCAAAACTTTCCCACTT-----CCGGTTT-CCC-----TTTCT-TTTTAAGGGA-AAAAATTCCTAAAGCACAGA-ACGCAATTTGTTGAATATTAA---AA--AATGAAGAATTTA-----TT--TGAATTTGTTTTATTTTAA-----------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AACGGATTCCAGCCCCAGGGTGCCCATCTGCCCGTTGCCCC-----CGTGGCC---TAAGTGAAGT---TGCCTTAATCGG-AAGCAGCTGTAAAGCCA--ACC-AATCCTACACAATTCCTTGTTATTTTCCCCAAAACTTCCCAATTT-----CCGAATTTCCC-----TT-CT-TTTGAAAGGA-AATATTTTCCCAGTCACAGA-ACGAAATTTGTTGAATATTAA---AA--AATGAATATTTTA-----TT--TGAATTGGTTTTATTGAAAAA--A----------------------------TGSizeHit CountTotal NormTotal
No Reads
dm3
AACGGATTCCAGCCCGAGGGTGCTCATCTGCCCGTTGCCCC-----CGTGGCA---TAAGTGAAGT---TGCTTTCACTGT-AAGCAGCTTTAAACCCA---CC-AATTCTGCAACACTCTTTGTTATCTTCCCCAACACTTACCTACTT-----TCGGTTT-TCCC----T-----TTTAAAAGGG-AAAGAATCCTAAGTTACAGA-ACGCAGTTTGTTGAATATTAA---AA--AATGTAGATTTTA-----TA--TGAATTCGTTTTATTTTAAA----------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................GT---TGCTTTCACTGT-AAGCA..................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................AGTTACAGA-ACGCAGTTTGTTGA..........................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................ACAGA-ACGCAGTTTGTTGAAT........................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CCC----T-----TTTAAAAGGG-AAAGAAT......................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CCC----T-----TTTAAAAGGG-AAAGAATCCTAA.................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................AGTGAAGT---TGCTTTCACTGT-AAGCA..................................................................................................................................................................................................................................2512.0020000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................GAATCCTAAGTTACAGA-ACGC....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................ACTT-----TCGGTTT-TCCC----T-----TTTAAAAGG...............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................G-AAAGAATCCTAAGTTACAGA-ACGC....................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................CCTAAGTTACAGA-ACGCAG..................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................GTTACAGA-ACGCAGTTTGTTGA..........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................CCC----T-----TTTAAAAGGG-AAAGAATC.....................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CCC-----CGTGGCA---TAAGTGAAGT---TG..................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................CTTCCCCAACACTTACCTACTT-----T.............................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................CCTAAGTTACAGA-ACGCA...................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................ATTCTGCAACACTCTTTGTTATC........................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TACAGA-ACGCAGTTTGTTG...........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TTCACTGT-AAGCAGCTTTAAACCC.......................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................CTAAGTTACAGA-ACGCAGTTTGT.............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................TGCCCC-----CGTGGCA---TAAGTGAAGT---TGC.................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................G-AAAGAATCCTAAGTTACAG..........................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CC-AATTCTGCAACACTCTTTGT............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................AACACTTACCTACTT-----TCGG..........................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................TGAATATTAA---AA--AATGTA......................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TTTCACTGT-AAGCAGCTTTAAACCCA---...................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CTTACCTACTT-----TCGGTTT-T.....................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TTCACTGT-AAGCAGCTTTAAAC.........................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CCC----T-----TTTAAAAGGG-AAAGAATCCTAAGT...............................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................TCCTAAGTTACAGA-ACGCAGTTTGT.............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AAGAATCCTAAGTTACAGA-ACGCA...................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GTGGCA---TAAGTGAAGT---TGCT................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................CC-AATTCTGCAACACTCT................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................CTGT-AAGCAGCTTTAAACCC.......................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TGGCA---TAAGTGAAGT---TGC.................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CCC-----CGTGGCA---TAAGTGAAGT---TGC.................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................CCCAACACTTACCTACTT-----TC............................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................GTTACAGA-ACGCAGTTTGTTG...........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CC-----CGTGGCA---TAAGTGAAGT---TGC.................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGCA---TAAGTGAAGT---TGCT................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GCTTTAAACCCA---CC-AATTCTGC........................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................AGTTACAGA-ACGCAGTTTGTTG...........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GAGGGTGCTCATCTGCCCGTTGC...................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AGCAGCTTTAAACCCA---CC-AATTCTGC........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CCAACACTTACCTACTT-----T.............................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AAAGAATCCTAAGTTACAGA-........................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GTGGCA---TAAGTGAAGT---TG..................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................T-TCCC----T-----TTTAAAAGGG-AAAGAATCCTA..................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GCTTTAAACCCA---CC-AATTCTGCAACA....................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................GGG-AAAGAATCCTAAGTTACA...........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CGTTGCCCC-----CGTGGCA---TAAGTGAAGT---TGC.................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CAGCCCGAGGGTGCTCAT..............................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................CTTTCACTGT-AAGCAGCT...............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............CGAGGGTGCTCATCTGCCCGTT.....................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CTGCCCGTTGCCCC-----CGTGGC.....................................................................................................................................................................................................................................................................2030.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CTGCCCGTTGCCCC-----CGTGGCA---T................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GCCCGTTGCCCC-----CGTGGC.....................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................AATGTAGATTTTA-----TA--TGGCC.................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AACGGATTCCAGCCCCAGGGTGCTCATCTGCCCGTTGCCCC-----CGTGGCC---TAATTGAAGTTGTTGCATACACCGT-AAGCACCTTTAAAGCCC--ACC-AGTCCTGCAAAACTCTTTGTTATCTTCCCCAACACTTACCTACTT-----CCGGTTT-CCC-----TT-----TTTAAAGGG-AAAGAATCCTTAGTTACAGA-ACGCAGTTTGTTGAATATTAA---AG--AATGTAGATTTTA-----TA--TGAATTCGTTTTATTTTAAA----------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................ATATTAA---AG--AATGTAGATTTT................................................................2114.00400400000000000000
..........................................................................................................................................................................................................................GTTGAATATTAA---AG--AATGTAGATTTT................................................................2613.00300300000000000000
..........................................................................................................................................................................................................................GTTGAATATTAA---AG--AATGTAGATT..................................................................2412.00200200000000000000
............................................................................................................................................................................................................................TGAATATTAA---AG--AATGTAGATTTT................................................................2412.00200200000000000000
............................................................................................................CCTGCAAAACTCTTTGTTATCTTCCC...................................................................................................................................................................................2612.00200200000000000000
.................................................GGCC---TAATTGAAGTTGTTGCAT...............................................................................................................................................................................................................................................2212.00200000000000200000
............................................................................................................CCTGCAAAACTCTTTGTTATCTTCC....................................................................................................................................................................................2512.00200200000000000000
...............................................................................GT-AAGCACCTTTAAAGCCC--ACC-................................................................................................................................................................................................................2212.00200200000000000000
..........................................................................ACACCGT-AAGCACCTTTAAAGCC.......................................................................................................................................................................................................................2311.00100000000000100000
..................................................GCC---TAATTGAAGTTGTTGC.................................................................................................................................................................................................................................................1911.00100000000000100000
........................................................................ATACACCGT-AAGCACCTTTAAAGC........................................................................................................................................................................................................................2411.00100000000000100000
...............................................GTGGCC---TAATTGAAGTTGTT...................................................................................................................................................................................................................................................2011.00100000000000100000
.................................................................................................................................................................................................................................ATTAA---AG--AATGTAGATTTT................................................................1911.00100100000000000000
..................................................................................................................................................................................................................................TTAA---AG--AATGTAGATTTTA-----TA--TGAAA.................................................2611.00100100000000000000
..........................................................................................................................................................................................................TACAGA-ACGCAGTTTGTTGA..........................................................................................2011.00100000000000100000
.....................................................................................................ACC-AGTCCTGCAAAACTC.................................................................................................................................................................................................1811.00100100000000000000
...................................................................GTTGCATACACCGT-AAGCA..................................................................................................................................................................................................................................1911.00100000000000100000
...............................................................................................................................................................................................................A-ACGCAGTTTGTTGAATATTAA---................................................................................2211.00100000000000100000
..........................................................................................................................................................................................G-AAAGAATCCTTAGTTACAGA-A.......................................................................................................2211.00100100000000000000
.......................................................................................................................................AACACTTACCTACTT-----CCGGTTT-......................................................................................................................................................2211.00100000000000100000
......................................................................GCATACACCGT-AAGCACCTTT.............................................................................................................................................................................................................................2111.00100000000000100000
.........................................................................................................................................................................................GG-AAAGAATCCTTAGTTACAGA-AC......................................................................................................2411.00100100000000000000
........................................C-----CGTGGCC---TAATTGAAGTTGTTGCA................................................................................................................................................................................................................................................2511.00100000000000100000
..........................................................................................................................................................................................................................GTTGAATATTAA---AG--AATGTAGATTT.................................................................2511.00100100000000000000
....................................................................................................................................................TT-----CCGGTTT-CCC-----TT-----TTTAAAGGG-A............................................................................................................................2411.00100000000000100000
.........................................................................................................................................................................................................TTACAGA-ACGCAGTTTGTTGAATAT......................................................................................2511.00100000000000100000
..................................................................................................................................................................................................................................TTAA---AG--AATGTAGATTTTA-----TA--TGAATT................................................2711.00100100000000000000
...............................................................................................................................................CCTACTT-----CCGGTTT-CCC-----T.............................................................................................................................................1811.00100100000000000000
......................................................................................................................................................................................................................................................TTTA-----TA--TGAATTCGTTTTATTTTAAA----------------------------------2611.00100100000000000000
..........................................................................................................................................................................................G-AAAGAATCCTTAGTTACAGA-AC......................................................................................................2311.00100100000000000000
.............................................................................................................................................................................................AAGAATCCTTAGTTACAGA-ACGC....................................................................................................2311.00100100000000000000
.ACGGATTCCAGCCCCAGGGTGCTCATC.............................................................................................................................................................................................................................................................................................2720.50100000000000100000
.....................GCTCATCTGCCCGTTGCCCC-----...........................................................................................................................................................................................................................................................................2020.50100000000000100000
.....ATTCCAGCCCCAGGGTGCTCATCTG...........................................................................................................................................................................................................................................................................................2520.50100100000000000000
....GATTCCAGCCCCAGGGTGCTC................................................................................................................................................................................................................................................................................................2120.50100000000000100000
AACGGATTCCAGCCCCAGG......................................................................................................................................................................................................................................................................................................1930.33100000000000100000
droSec2
AACGGATTCCAGCCCCAGGGTGCTCATCTGCCCGTTGCCCC-----CGTGGCC---TAAGTGAAGTTGTTGCATACACCGT-AAGCAGCTTTAAAGCCC--ACC-AGTCCTGCAAAACTCTTTTTTATCTTCCCCAACACTTACCTACTT-----CCGGTTT-CCC-----TT-----TTTAAAGGG-AAAGAATCCTTAGTTACAGA-ACGCAGTTTGTTGAATATTAA---AG--AATGTAGATTTTA-----TA--TGAATTCGTTTTATTTTAAA----------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................TTGTTGCATACACCGT-AAGCAG.................................................................................................................................................................................................................................2212.0020020
........................................................................ATACACCGT-AAGCAGCTTTAAAGCC.......................................................................................................................................................................................................................2511.0010010
................................................................GTTGTTGCATACACCGT-A......................................................................................................................................................................................................................................1811.0010010
.................................GTTGCCCC-----CGTGGCC---TAAGTGAAGT.......................................................................................................................................................................................................................................................2511.0010001
......................................CCC-----CGTGGCC---TAAGTGAAGTT......................................................................................................................................................................................................................................................2111.0010001
.........................................................................................................................................................................................................TTACAGA-ACGCAGTTTGT.............................................................................................1811.0010001
..............................................................................................................................................................................................AGAATCCTTAGTTACAGA-ACGCAGT.................................................................................................2511.0010010
.....................................................................TGCATACACCGT-AAGCAGCTTTAAAG.........................................................................................................................................................................................................................2611.0010010
.................................................GGCC---TAAGTGAAGTTGTTGC.................................................................................................................................................................................................................................................2011.0010010
.................................................GGCC---TAAGTGAAGTTGTTGCAT...............................................................................................................................................................................................................................................2211.0010010
..................................................GCC---TAAGTGAAGTTGTTGC.................................................................................................................................................................................................................................................1911.0010001
..............................................CGTGGCC---TAAGTGAAGTTGTTGC.................................................................................................................................................................................................................................................2311.0010001
...................................TGCCCC-----CGTGGCC---TAAGTGAAGTTGTT...................................................................................................................................................................................................................................................2711.0010010
droYak3
AACGGATTCCAGCCCCAGGGTGCTCATCTGCCCGTTGCCCC-----TGAGGCC---TAAGTGAAGT---TGGTTTTACAGT-CAGCTGCTTTTAAGCCA--GCC-AGTCCTACAAAACTCTTTGTTATT---CCCAACTTTTACCTACAT-----CCGGTTT-TCC-----TT----TTTTAAAGGA-AAGAATTCCTAAGTTACAGA-ACGCAGTTTGTTGAATATTAAA--AA--AATGTAGATTTTACTATATA--TGAATTCGTTTTATTGCCAAA---------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................TTTTAAAGGA-AAGAATTCC....................................................................................................................1912.00200200000000
.......................................................................................GCTTTTAAGCCA--GCC-AGTCCTAC........................................................................................................................................................................................................2312.00200200000000
..........................................................................................................................................TTTTACCTACAT-----CCGGTTT-TCC-----TC----........................................................................................................................................2411.00100100000000
..................................................................................................A--GCC-AGTCCTACAAAACTCT................................................................................................................................................................................................2011.00100100000000
.....................................................................TGGTTTTACAGT-CAGCTGCT...............................................................................................................................................................................................................................2011.00100010000000
............................................................................................................................................................................................AAGAATTCCTAAGTTACAGA-........................................................................................................2011.00101000000000
.....................................................................................CTGCTTTTAAGCCA--GCC-AGTC............................................................................................................................................................................................................2111.00100100000000
............................................................................................................................................................................T----TTTTAAAGGA-AAGAATTCC....................................................................................................................2011.00100100000000
...............................................................AGT---TGGTTTTACAGT-CAGC...................................................................................................................................................................................................................................1911.00100100000000
..........................................................................................................................................................................................A-AAGAATTCCTAAGTTACAGA-ACGC....................................................................................................2511.00100100000000
.............................................................................................................................................................................................................AGA-ACGCAGTTTGTTGAA.........................................................................................1811.00100010000000
.............................................................GAAGT---TGGTTTTACAGT-CAGCC..................................................................................................................................................................................................................................2211.00100010000000
.......................................................................................GCTTTTAAGCCA--GCC-AGTCCT..........................................................................................................................................................................................................2111.00100100000000
.............................................................GAAGT---TGGTTTTACAGT-CAGC...................................................................................................................................................................................................................................2111.00100100000000
........................................C-----TGAGGCC---TAAGTGAAGT---T...................................................................................................................................................................................................................................................1911.00100100000000
..............................................................................................................................................................................................GAATTCCTAAGTTACAGA-ACGC....................................................................................................2211.00100100000000
.....................................................................................................................................................................C-----TT----TTTTAAAGGA-AAGAATTCCT...................................................................................................................2311.00100100000000
..............................................................................AGT-CAGCTGCTTTTAAGCCA--GCC-................................................................................................................................................................................................................2311.00100100000000
...........................................................GTGAAGT---TGGTTTTACAGT-CAGC...................................................................................................................................................................................................................................2311.00100100000000
........................................C-----TGAGGCC---TAAGTGAAGT---TGGT................................................................................................................................................................................................................................................2211.00100100000000
....................................................................................................................................................AT-----CCGGTTT-TCC-----TT----TTTTAAAGGA-AA...........................................................................................................................2611.00100100000000
.................................GTTGCCCC-----TGAGGCC---TAAGTGAAGC---....................................................................................................................................................................................................................................................2511.00100100000000
..........................................................................................................................................................................................................TACAGA-ACGCAGTTTGTTGA..........................................................................................2011.00100010000000
.................................GTTGCCCC-----TGAGGCC---TAAGTGAAGT---TGGT................................................................................................................................................................................................................................................2911.00100100000000
..............................................................................................................................................................................................GAATTCCTAAGTTACAGA-A.......................................................................................................1911.00100100000000
........................................................................................................................................................................................................GTTACAGA-ACGCAGTTTGTTGA..........................................................................................2211.00100010000000
.........................................................................................................................................................................................GA-AAGAATTCCTAAGTTACA...........................................................................................................2011.00100010000000
...................................TGCCCC-----TGAGGCC---TAAGTGAAGT---TGGT................................................................................................................................................................................................................................................2711.00100010000000
..............................................................................................AGCCA--GCC-AGTCCTACAAAACTCTTTGT............................................................................................................................................................................................2811.00100100000000
................................................................................................................................................................................................ATTCCTAAGTTACAGA-ACGCAGTT................................................................................................2411.00100100000000
.........................................................................................TTTTAAGCCA--GCC-AGTCC...........................................................................................................................................................................................................1811.00100100000000
........CCAGCCCCAGGGTGCTCATCTGCCCGT......................................................................................................................................................................................................................................................................................2720.50100000100000
.ACGGATTCCAGCCCCAGGGTGCTC................................................................................................................................................................................................................................................................................................2420.50100100000000
.ACGGATTCCAGCCCCAGGGTGCTCATC.............................................................................................................................................................................................................................................................................................2720.50100100000000
........................CATCTGCCCGTTGCCCC-----TGAGGC.....................................................................................................................................................................................................................................................................2320.50100100000000
.......TCCAGCCCCAGGGTGCTCATCT............................................................................................................................................................................................................................................................................................2220.50100100000000
...........................CTGCCCGTTGCCCC-----TGAGG......................................................................................................................................................................................................................................................................1920.50100100000000
droEre2
AACGGATTCCAGCCCCAGGGTGCTCATCTGCCCGTTGCCCC-----CTAGGCC---TAAGCGAAGT---TCGTTTCTGCGT-AAGCATCTTTAAAGCCG--GCC-AGTCCTACAAAACTCTTTGTTATA---CCCAACATGTACTTACAT-----CCGGTTT-CCC-----GC----TTTAAAAGGG-AAAAATTCCTAAGTTGCAGA-ACCCACTTTGTTGAATATAAA---AA--AACGTAGATTTTA-----TA--TGAATTCGTTTTATTGCAAG--TGTTTTTTCTCAAAAGGTCGGATTGAAACCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................C---TAAGCGAAGT---TCGTTTCTGC..........................................................................................................................................................................................................................................2116.0060204000
................................................AGGCC---TAAGCGAAGT---TCGT................................................................................................................................................................................................................................................1913.0030003000
...............................................................................................................ACAAAACTCTTTGTTATA---CCC..................................................................................................................................................................................2112.0020200000
.........................ATCTGCCCGTTGCCCC-----CTAGGC.....................................................................................................................................................................................................................................................................2212.0020002000
.............................................................................................................................................................................................AAAATTCCTAAGTTGCAGA-........................................................................................................1912.0020101000
................................................................................................................CAAAACTCTTTGTTATA---CC...................................................................................................................................................................................1912.0020200000
...........................................................................................TAAAGCCG--GCC-AGTCCTACA.......................................................................................................................................................................................................2012.0020101000
..................................................................................................................................................................................................TCCTAAGTTGCAGA-ACCCA...................................................................................................1912.0020002000
...................................................................................................................................................CAT-----CCGGTTT-CCC-----GC----TTTAAAAGGG-.............................................................................................................................2511.0010100000
................................................AGGCC---TAAGCGAAGT---TCGTTTCT............................................................................................................................................................................................................................................2311.0010001000
............................................................................................................CCTACAAAACTCTTTGTTATA---CCC..................................................................................................................................................................................2411.0010100000
...............................................................................................................................................................................................AATTCCTAAGTTGCAGA-ACCCACTT................................................................................................2511.0010001000
....................................................................................................................................................AT-----CCGGTTT-CCC-----GC----TTTAAAAGGG-AA...........................................................................................................................2611.0010100000
.........................ATCTGCCCGTTGCCCC-----CTAGGCC---TA...............................................................................................................................................................................................................................................................2511.0010001000
..........................................................................................TTAAAGCCG--GCC-AGTCCTACAAA.....................................................................................................................................................................................................2311.0010001000
.....................GCTCATCTGCCCGTTGCCCC-----CTAGGCC---TA...............................................................................................................................................................................................................................................................2911.0010100000
..........................................................................................................GTCCTACAAAACTCTTTGTTATA---CC...................................................................................................................................................................................2511.0010100000
.......................................................................................................................................................................................................AGTTGCAGA-ACCCACTTTGT.............................................................................................2011.0010001000
................................................AGGCC---TAAGCGAAGT---TCGTTT..............................................................................................................................................................................................................................................2111.0010001000
.........................................................................................................................................CATGTACTTACAT-----CCGGT.........................................................................................................................................................1811.0010001000
.................................................GGCC---TAAGCGAAGT---TCGTTTCTGC..........................................................................................................................................................................................................................................2411.0010001000
.................................................................................................................AAAACTCTTTGTTATA---CCCAAC...............................................................................................................................................................................2211.0010100000
........................CATCTGCCCGTTGCCCC-----CTAGGCC---T................................................................................................................................................................................................................................................................2511.0010100000
..............................................................................................................................ATA---CCCAACATGTACTTACAT-----CCG...........................................................................................................................................................2411.0010100000
................................................AGGCC---TAAGCGAAGT---TCGTT...............................................................................................................................................................................................................................................2011.0010001000
..........................................................................................................................................................................................G-AAAAATTCCTAAGTTGCAGA-........................................................................................................2111.0010001000
.....................GCTCATCTGCCCGTTGCCCC-----CTA........................................................................................................................................................................................................................................................................2311.0010100000
...........................................................................CTGCGT-AAGCATCTTTAAAGCCG--GCC-................................................................................................................................................................................................................2611.0010100000
........................................................................................CTTTAAAGCCG--GCC-AGTCCTAC........................................................................................................................................................................................................2211.0010001000
......................................................................................................................................................................................AAGGG-AAAAATTCCTAAGTTGCAGA-AC......................................................................................................2711.0010100000
...................................................................................................................AACTCTTTGTTATA---CCCAAC...............................................................................................................................................................................2011.0010100000
...................................................................................AGCATCTTTAAAGCCG--GCC-A...............................................................................................................................................................................................................2011.0010100000
...............................................................................................................ACAAAACTCTTTGTTATA---CCCAACATGC...........................................................................................................................................................................2811.0010100000
....................................................C---TAAGCGAAGT---TCGTTTCTGCGT-AAGC...................................................................................................................................................................................................................................2711.0010100000
................................................................GT---TCGTTTCTGCGT-AAGCATC................................................................................................................................................................................................................................2111.0010001000
......................................................................................ATCTTTAAAGCCG--GCC-AGT.............................................................................................................................................................................................................1911.0010100000
............................................................................................................................................................................................AAAAATTCCTAAGTTGCAGA-ACCCAC..................................................................................................2611.0010100000
...........................................................................................................................................................................................................GCAGA-ACCCACTTTGTTGA..........................................................................................1911.0010001000
......................................................................................................................................CAACATGTACTTACAT-----CCGGTTT-CCC-----..............................................................................................................................................2611.0010100000
...................................................................................................................................................CAT-----CCGGTTT-CCC-----GC----TTTAAAAGGG-A............................................................................................................................2611.0010100000
.............................................................GAAGT---TCGTTTCTGCGT-AAGC...................................................................................................................................................................................................................................2111.0010100000
...............................................................................................................................................................................................AATTCCTAAGTTGCAGA-ACCCACTTT...............................................................................................2611.0010100000
...............................................................................GT-AAGCATCTTTAAAGCCG--GCC-AGTC............................................................................................................................................................................................................2611.0010100000
............................................................CGAAGT---TCGTTTCTGCGT-A......................................................................................................................................................................................................................................1911.0010001000
...............................................................................................................................................CTTACAT-----CCGGTTT-CCC-----GC----TTT.....................................................................................................................................2211.0010001000
..........................................................................................TTAAAGCCG--GCC-AGTCCTACAA......................................................................................................................................................................................................2211.0010001000
.............................................................................................................................................................................................AAAATTCCTAAGTTGCAGA-AC......................................................................................................2111.0010100000
.............................................................GAAGT---TCGTTTCTGCGT-AAGCATC................................................................................................................................................................................................................................2411.0010100000
.......................................................................................................................................................................................................AGTTGCAGA-ACCCACTTTGTTGAAT........................................................................................2511.0010100000
..................................................GCC---TAAGCGAAGT---TCGTTT..............................................................................................................................................................................................................................................1911.0010001000
............................................................................................................................................GTACTTACAT-----CCGGTTT-CCC-----GC----........................................................................................................................................2211.0010100000
..........................................................................................................................................................................................................TGCAGA-ACCCACTTTGTTGA..........................................................................................2011.0010001000
....................................................................................................................................................................................................CTAAGTTGCAGA-ACCCACTTTGTTGAAT........................................................................................2811.0010001000
........................................................TAAGCGAAGT---TCGTTTCTGCGT-AAGC...................................................................................................................................................................................................................................2611.0010100000
.........................................................AAGCGAAGT---TCGTTTCTGCGT-AAGC...................................................................................................................................................................................................................................2511.0010001000
............................................................................................................................................................................................AAAAATTCCTAAGTTGCAGA-AC......................................................................................................2211.0010100000
.....................GCTCATCTGCCCGTTGCCCC-----CTAGGC.....................................................................................................................................................................................................................................................................2611.0010100000
............................................................................................................................................................................................AAAAATTCCTAAGTTGCAGA-ACCCACT.................................................................................................2711.0010100000
.......................................................................................................................................AACATGTACTTACAT-----CCGG..........................................................................................................................................................1911.0010100000
..........................................................................................................................................................................................G-AAAAATTCCTAAGTTGCAGA-ACCCA...................................................................................................2611.0010001000
.............................................................................................................................................................................................AAAATTCCTAAGTTGCAGA-ACCCACC.................................................................................................2611.0010100000
...............................................................................GT-AAGCATCTTTAAAGCCG--GCC-................................................................................................................................................................................................................2211.0010100000
.....................................................................................................................CTCTTTGTTATA---CCCAACATG............................................................................................................................................................................2111.0010100000
.................................................GGCC---TAAGCGAAGT---TCGTT...............................................................................................................................................................................................................................................1911.0010001000
...................................................................................................................................................................................................CCTAAGTTGCAGA-ACCCACTTTGTTGA..........................................................................................2711.0010100000
.........................................................................................TTTAAAGCCG--GCC-AGTCCTACAA......................................................................................................................................................................................................2311.0010001000
.................................................................................................................................................................................................TTCCTAAGTTGCAGA-ACCCAC..................................................................................................2111.0010100000
..........................................................................................................................................................................................................TGCAGA-ACCCACTTTGTTGAATATAAA---A...............................................................................2811.0010001000
.............................................................GAAGT---TCGTTTCTGCGT-A......................................................................................................................................................................................................................................1811.0010001000
...........................................................................CTGCGT-AAGCATCTTTAAAGCCG--GC..................................................................................................................................................................................................................2511.0010100000
.......................TCATCTGCCCGTTGCCCC-----CTA........................................................................................................................................................................................................................................................................2111.0010100000
..............................................CTAGGCC---TAAGCGAAGT---TCGT................................................................................................................................................................................................................................................2111.0010001000
................................................................................................................................................................................................ATTCCTAAGTTGCAGA-ACC.....................................................................................................1911.0010100000
........................................................TAAGCGAAGT---TCGTTTCTGCGT-AAGCATC................................................................................................................................................................................................................................2911.0010100000
.....................GCTCATCTGCCCGTTGCCCC-----CT.........................................................................................................................................................................................................................................................................2211.0010100000
AACGGATTCCAGCCCCAGGGTGCTC................................................................................................................................................................................................................................................................................................2520.5010100000
................AGGGTGCTCATCTGCCCGTTGCCCC-----...........................................................................................................................................................................................................................................................................2520.5010100000
.........CAGCCCCAGGGTGCTCATCTGCCC........................................................................................................................................................................................................................................................................................2420.5010100000
...GGATTCCAGCCCCAGGGTGCTCAT..............................................................................................................................................................................................................................................................................................2420.5010100000
.ACGGATTCCAGCCCCAGGG.....................................................................................................................................................................................................................................................................................................1950.2010100000
dp5
AACGGTTTCCAGCCCTCGGGCGCTCATCTGCCCGTGGCCCC-----TGAGGCT---TAAGTTGAGT---TGCTTCCATCGC-AAGCAGCTTGAACGCCA--TCG-AGTC----------CCTTGTTACTTTCCCCAG------------A-----CCGATTT-CCCAAACCTTTT--ATTCAAAAGG-AAAAGGATCTTAGTCAAAAG-CCCTAGTTTGTTAAATATTAAAGAAA--AATGA---GTACA---TAAAC-AAAATTTGTTTCGCAAT-----TACACTTCCT------------------CCAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................CCAG------------A-----CCGATTT-CCCAAACCT.............................................................................................................................................2111.0010010000000
.....................................................................................................................................CCAG------------A-----CCGATTT-CCCAAAC...............................................................................................................................................1911.0010000100000
............................................................................................................................TTACTTTCCCCAG------------A-----CCGATTT-CCCAAAC...............................................................................................................................................2811.0010010000000
.........................................................................TCCATCGC-AAGCAGCTTGAACGCCA--C...................................................................................................................................................................................................................2611.0010010000000
..........................................................................................................GTC----------CCTTGTTACTTTCCCCAG------------A-----CCGATTT-......................................................................................................................................................2911.0010010000000
......................................................................................................................................................................................AAAGG-AAAAGGATCTTAGT...............................................................................................................1911.0010000100000
..............................................................................................................................................................................T--ATTCAAAAGG-AAAAGGATCTTAGT...............................................................................................................2511.0010010000000
..........................................................................CCATCGC-AAGCAGCTTGAACGCCA--T...................................................................................................................................................................................................................2511.0010100000000
................................CGTGGCCCC-----TGAGGCT---TAAGTTGAGT---TG..................................................................................................................................................................................................................................................2820.5010010000000
....GTTTCCAGCCCTCGGGCGCTCATC.............................................................................................................................................................................................................................................................................................2420.5010000100000
......................CTCATCTGCCCGTGGCCCC-----...........................................................................................................................................................................................................................................................................1920.5010010000000
droPer2
AACGGTTTCCAGCCCTCGGGCGCTCATCTGCCCGTGGCCCC-----TGAGGCT---TAAGTTGAGT---TGCTTCCTTCGC-AAGCAGCTTGAAAGCCA--TCG-AGTC----------CCTTGTTACTTTCCCCAG------------A-----CCGATTT-CCCAAACCTTTT--ATTCAAAAGG-AAAAGGATCTTAGTCAAAAG-CCCTAGTTTGTTAAATATTAAAGAAA--AATGA---GTACA---TAAA--CAAATTTGTTTCGCAAT-----TACACTTCCT------------------CCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................AAAGGATCTTAGTCAAAAG-C.......................................................................................................2012.002200000
...........................................................................................................................................................................TTTT--ATTCAAAAGG-AAAAGGAT.....................................................................................................................2212.002200000
.......................................................................................................................................................................................AAGG-AAAAGGATCTTAGTC..............................................................................................................1912.002200000
..............................................................................................AGCCA--TCG-AGTC----------CCTTGT............................................................................................................................................................................................1811.001001000
.................................................................................................CA--TCG-AGTC----------CCTTGTTAC.........................................................................................................................................................................................1811.001100000
...............................................................................................................................CTTTCCCCAG------------A-----CCGATTT-CCCAAACC..............................................................................................................................................2611.001100000
................................................................................................................................TTTCCCCAG------------A-----CCGATTT-CCCAAACCTT............................................................................................................................................2711.001100000
........................................................................TTCCTTCGC-AAGCAGCTT..............................................................................................................................................................................................................................1821.002200000
.......................................................................CTTCCTTCGC-AAGCAGCTTG.............................................................................................................................................................................................................................2011.001100000
..........................................................................................................................................................................CTTTT--ATTCAAAAGG-AAAAGGATCT...................................................................................................................2511.001100000
...........................................................................................................................................................................TTTT--ATTCAAAAGG-AAAAGGATCTTAGT...............................................................................................................2811.001100000
...................................................................................................................................CCCCAG------------A-----CCGATTT-CCCAAACCT.............................................................................................................................................2311.001100000
...............................................................................................................................CTTTCCCCAG------------A-----CCGATTT-CCCAAAC...............................................................................................................................................2511.001001000
........................................................................TTCCTTCGC-AAGCAGCTTGAA...........................................................................................................................................................................................................................2111.001001000
...........................................................................CTTCGC-AAGCAGCTTGAAAGCC.......................................................................................................................................................................................................................2211.001100000
............................................................................................................................................................................TTT--ATTCAAAAGG-AAAAGGATCTTAGG...............................................................................................................2711.001100000
..........................................................................................................................................................................................................CAAAAG-CCCTAGTTTGTTAAATATT.....................................................................................2511.001001000
.....................................CCCC-----TGAGGCT---TAAGTTGAGT---T...................................................................................................................................................................................................................................................2220.501100000
......................CTCATCTGCCCGTGGCCCC-----TGAC.......................................................................................................................................................................................................................................................................2320.501100000
.......................................CC-----TGAGGCT---TAAGTTGAGT---TGC.................................................................................................................................................................................................................................................2220.501001000
..............................................TGAGGCT---TAAGTTGAGT---TGC.................................................................................................................................................................................................................................................2020.501001000
.............................................................TGAGT---TGCTTCCTTCGC-AAGCA..................................................................................................................................................................................................................................2220.501001000
...................................................CT---TAAGTTGAGT---TGCTTCCTTCGC-AAGC...................................................................................................................................................................................................................................2820.501100000
droWil2
AACGGTTTCCAACCTGAGGGTGCTCATTTGCCCAATGTGCC-----AATTGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AATGGCTTCCGCGCCGAGGGTGCACATATTCCCACACCGCCGCCCGTGAGCCC----------GGC---CG-------------------------------------------------------------------------CCGCTG-----CCGGTCC-CCG-----CCGATTCTTC-----------------------------------------------------------------------------------------------AAA----------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AACGGCTTCCAGCCCGAGGGCGATCATCTGCCCGTTGCGCC-----G----CA---ATAGTTGCGT---TTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AATGGCTTCCGTGCCGAGGGCGCCCATATTCCCACACCCCC-----GCCCG-----TCAGCCCCGC---CGCC----------------------------------------------------------------------------G-----CCGCTCC-CCG-----CCGATTCTTC-----------------------------------------------------------------------------------------------AAA----------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:18 AM