ID:

dan_2733

 Coordinate:

scaffold_13337:19505068-19505341 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.1 -32.0 -32.0

Flybase annnotation

CDS [Dana\GF23585-cds]; exon [dana_GLEANR_8374:5]; CDS [Dana\GF23585-cds]; exon [dana_GLEANR_8374:4]; intron [Dana\GF23585-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATCAGCAACATCCCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTTAGTACGGAACTTACTAGTATATGATAGTAGTAACCCCTATCCCCAATGATAGTCATCATGTGAGCTTCACTTTGCTTTTATTTATTGACATTTGTGTTTCTTTCTTTCTTTGTAATTTCATAAATATTTCAACTTCTATTTGAACACCACACTACTTCATCTTCACAACTTGAACAACTATATATGTACAACACCACCACAACCACCAAAAAAAACAACCAACCATCATCATTTGGGAATAAATTAACCAACATAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
**************************************************(((((((.((...((((((.(((...))).)))))).))...((((.((((((.((((..(((.((((........)))).)))....))))(((((((......................)))))))..(((((.......))))).........................(((.(((........))).)))....................................)))))).))))...................))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V055
head
 V039
embryo
 V105
male body
........ACATCCCCATGGATCAGTTCGCAGCC.................................................................................................................................................................................................................................................................................................................................................... 26 0 1 2.00 2 0 1 1 0 0 0
.....................................................................................................................................................................................................................................................................AAAAAAACAACCAACCACCACCA.......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.................TGGATCAGTTCGCAGCCGCTGTATA............................................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................GCCGCTGGAGTGCCAGCCATCTACCCACC...................... 29 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................AAAAAAAACAACCCACCA................................................................................................ 18 1 9 1.00 9 9 0 0 0 0 0
....................ATCAGTTCGCAGCCGCTGT............................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................AGCCGCTGGAGTGCCAGCC................................. 19 0 1 1.00 1 0 1 0 0 0 0
..........................TCGCAGCCGCTGTATATCCGCC...................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0
........................GTTCGCAGCCGCTGTATATCCG........................................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................AAAAAAAAGAACCAACCATC.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................................AACCAAAAAAGACAACCAACCACC.............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................AAAAAGAACCAACCACCACCATT........................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................AAAAAAACAACCAACCATCC............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................................CGCCAAAAAAAACAACCAACC................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................................TACATGTAGAACACCACCAC......................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................AAAAAAAACAACCCACCATC.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................CCACCAAAAAAAACTACCAACCA................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
................ATGGATCACTTCGCATCCGCTT................................................................................................................................................................................................................................................................................................................................................ 22 3 1 1.00 1 0 0 0 1 0 0
..........ATCCCCATGGATCAGTTCGCAGCCG................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................CACAACCACCAAAAAAAACA........................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
...............................GCCGCTGTATATCCGCCAG.................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................GTCATCATGGGACCTTCA............................................................................................................................................................................................................................................................ 18 2 2 0.50 1 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................ACACCCACCAAAAAAAACCACCA.................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................CCTCAAAAAAAAACAACCAACCA................................................................................................ 23 2 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................AACCTCCAAAAAAACCAACC..................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................AAAAAAAACAGCCAACCACCA............................................................................................. 21 2 5 0.20 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................CAACCACCACAAAAAACACC...................................................................................................... 20 2 5 0.20 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................TACAACCCCACCCCAACCA.................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................ACAACCACCAAAAAAAAG......................................................................................................... 18 1 6 0.17 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................CAAAAAAAAACAACCAACCA................................................................................................ 20 1 6 0.17 1 1 0 0 0 0 0
...........................CGCAGCCGCGGTATTCCCG........................................................................................................................................................................................................................................................................................................................................ 19 3 6 0.17 1 0 0 0 1 0 0
.......................................................................................................................................................................................AACATATATTTGAACACCA............................................................................................................................................................................ 19 2 7 0.14 1 0 0 0 0 1 0
..........................................TCCGCCTGGGTAGTACGGC......................................................................................................................................................................................................................................................................................................................... 19 3 7 0.14 1 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................AAAAAACACAACCCACCATCAC............................................................................................ 22 3 8 0.13 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................CAAGAAAAAACAACCAACCA................................................................................................ 20 2 16 0.13 2 2 0 0 0 0 0
........................................................................................................................................................................................................................................ATATTTGTCAAACACCACCAC......................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................AAAACCACCAAAAAAAACA........................................................................................................ 19 1 9 0.11 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................TATAAATGTTCACCACCACC........................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................AAAAAAAACACCCAACCA................................................................................................ 18 1 20 0.10 2 2 0 0 0 0 0
.................................................................................................................................................................................................................................................................GACAAAAAAAACAACCAACCA................................................................................................ 21 2 11 0.09 1 1 0 0 0 0 0
...........................................................................GATAGCAGTAACTCGTATC........................................................................................................................................................................................................................................................................................ 19 3 11 0.09 1 0 0 0 0 0 1
.................................................................................................................................................................................................................................................................AACAAAAAAAACAACCCACCA................................................................................................ 21 2 12 0.08 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................................CAAAACCCCCACAACCACCA................................................................................................................. 20 2 13 0.08 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................CAACCACCAAAAAAAATACC...................................................................................................... 20 2 13 0.08 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................ACAACACCACCCTAACGACC.................................................................................................................. 20 3 14 0.07 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................ACAAAAAAAAACAACCCACCA................................................................................................ 21 2 15 0.07 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................AACAACCACCAAAAACAACCACCA.................................................................................................... 24 3 16 0.06 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................AAAAGAACAACCAACCACC.............................................................................................. 19 2 16 0.06 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................AAAAAATAACCAACCAACACCA.......................................................................................... 22 3 17 0.06 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................CAAAAAACACACCCAACCA................................................................................................ 19 2 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................AAAAACAACAACCAACCACC.............................................................................................. 20 2 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................CCCAACCACAACCCCCAAAAAA............................................................................................................ 22 3 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................AAAAAAGAACCAACCACCA............................................................................................. 19 2 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................................AACCAAACAAAACACCCAACCA................................................................................................ 22 3 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................AACAACCAAAAAAAACAA....................................................................................................... 18 1 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................CACACCCACACAAAAAAACAACC..................................................................................................... 23 3 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................AATATTTGTACAAAACCACCA.......................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................TAACATTTGTTTTTCTTTCT........................................................................................................................................................................................................................ 20 2 20 0.05 1 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................AAAACCACCAAAAAAAAC......................................................................................................... 18 1 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................AATATATATACAAGACCACC........................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................AACAAGAAAAACAACCCACCA................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GTAGTCGTTGTAGGGGTACCTAGTCAAGCGTCGGCGACATATAGGCGGTCCAATCATGCCTTGAATGATCATATACTATCATCATTGGGGATAGGGGTTACTATCAGTAGTACACTCGAAGTGAAACGAAAATAAATAACTGTAAACACAAAGAAAGAAAGAAACATTAAAGTATTTATAAAGTTGAAGATAAACTTGTGGTGTGATGAAGTAGAAGTGTTGAACTTGTTGATATATACATGTTGTGGTGGTGTTGGTGGTTTTTTTTGTTGGTTGGTAGTAGTAAACCCTTATTTAATTGGTTGTATCAATGACTGAAATGTCGGCGACCTCACGGTCGGTAGATGGGTGGAAGTCGGTACGTTATAGTCGGT
**************************************************(((((((.((...((((((.(((...))).)))))).))...((((.((((((.((((..(((.((((........)))).)))....))))(((((((......................)))))))..(((((.......))))).........................(((.(((........))).)))....................................)))))).))))...................))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V055
head
 M044
female body
 V039
embryo
 V105
male body		 V106
head
.............................................................................................................................................................................................ATGAACTTGTGGTGTGAAG...................................................................................................................................................................... 19 2 5 4.20 21 8 3 1 5 4 0
...................................................................................................................................................................................................................................................................................................................TCAATGTCTGATCTGTCGGCG.............................................. 21 3 1 2.00 2 0 0 2 0 0 0
.............................................................................................................................................................................................ATGAACTTGTGGTGTGAGG...................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................TGGGGATCGGGGATACTAT.............................................................................................................................................................................................................................................................................. 19 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................ATGAACTTGTGGTGTGATG...................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
.................................................................................TCATTGGGGATGGGGGT.................................................................................................................................................................................................................................................................................... 17 1 1 1.00 1 0 1 0 0 0 0
.............................................CGGGCCACTCATGCCTTG....................................................................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 1 0 0
..............................................................................................................................................................................................TGAACTTGTGGTGTGAAG...................................................................................................................................................................... 18 2 6 0.50 3 1 0 0 2 0 0
..................................CGACATAAAGGAGGTCCACT................................................................................................................................................................................................................................................................................................................................ 20 3 6 0.50 3 3 0 0 0 0 0
............................................................................................................................................TGCCAACACAAAGAAAGAAAG..................................................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................................................................................................................................TTTGATGAAGTGGAAGTGT.......................................................................................................................................................... 19 2 2 0.50 1 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................TTTTTTGTTGATTGGGAGTAG........................................................................................... 21 2 3 0.33 1 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................................................................CAATGTCTGATCTGTCGGCG.............................................. 20 3 4 0.25 1 0 0 1 0 0 0
...................................................................................................................................................ACAAAGACAGAAAGAAAC................................................................................................................................................................................................................. 18 1 5 0.20 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................TTCAACTTGTTGATCGATAC....................................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TCAATGTCTGATCTGTCGGC............................................... 20 3 5 0.20 1 0 0 1 0 0 0
..............................................................................................................................................................................................CTAACGTGTGGTGTGATGA..................................................................................................................................................................... 19 3 8 0.13 1 1 0 0 0 0 0
.............................................................................................................................................................................................ATGAACTAGTGGTGAGATG...................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 1 0 0
...............GTACATAGCCAAGTGTCGG.................................................................................................................................................................................................................................................................................................................................................... 19 3 9 0.11 1 0 1 0 0 0 0
.............................................................................................................................................................................................GTGAACTAGTGGTGTGATG...................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 2 0 0
....................................................................................................................................................CAAAGGAAGAAAGAACCTTTA............................................................................................................................................................................................................. 21 3 11 0.09 1 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................................TGGTCGGTAATAGTAAACTC.................................................................................... 20 3 12 0.08 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................TTTGGTGGGTGGTAGTAGT.......................................................................................... 19 2 17 0.06 1 0 0 1 0 0 0
..............................................................................................................................................................................................................TGAAATAGAAGTGTTAATCT.................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 1
...............................................................................................................................................................................................GAACTTGTGGTATGATG...................................................................................................................................................................... 17 2 17 0.06 1 0 1 0 0 0 0
.............................................................................................................................................................................................ATGAACTAGCGGTGTGATG...................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 1 0 0
................................................................................................................................................AACAGAAAGAAAGAAAGAA................................................................................................................................................................................................................... 19 1 19 0.05 1 1 0 0 0 0 0
.................................................................................................................................................CCACAATGTAAGAAAGAAAC................................................................................................................................................................................................................. 20 3 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................ATGGACTAGTGGTGTGATG...................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0
..................................................................................CATCGGGGCTAGGGGTT................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................AGCAAGAAAGAAAGAAACA................................................................................................................................................................................................................ 19 2 20 0.05 1 0 0 0 0 1 0
................................................................................................................................................AACACAAAAAAAGAAAGA.................................................................................................................................................................................................................... 18 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................ATGAACTCGTGGTGTGAGG...................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0
.........................................................................................................................TGAAACGAAAATAAATAAC.......................................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
..................................................................................CTTTGGGGATAGGTGTT................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GGGTCGGTTGATGGGTGGA..................... 19 2 20 0.05 1 0 0 0 0 1 0
.................................................................................................................................................ACACAAAGAAAGAAAAAAA.................................................................................................................................................................................................................. 19 1 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................CCACAAAGAAAGAAAGAAAAA................................................................................................................................................................................................................ 21 2 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................CCAACACGAAGAAAGAAAGA.................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
..................................................................................AATCGGGGATAGGGGTT................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:19505018-19505391 - dan_2733 CATCAGCAACATCCCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTTAGTAC---------------------------------------------------------------------G--GAACTTA---------CTAGTATATGATAGTAGTAACC--CCT--------------------------------------------------------------------------------------------------------------ATCC------CCA--------------------AT-GATA--G------------------TCATCAT------------GTG-----AGCTTCACTT---T-------G-------------C----TTTTATTTATTGACA---------TTTGTGTTTCTT-----TCTTTCTTTGTAATTTCAT-----AAAT--ATTTCAACTTCTA------TTTGA--ACACC-------------------ACACTACTTCATCTTCACA---ACTTGAACA-ACTATA------------------------------------------TATGTACAACACCAC-----------------CACAACC-ACCAAAA---AAAACA----------ACC--AACCATCATCAT------TTGGGAATA-AATTAACCA--ACATAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droBip1 scf7180000396360:699566-699922 - CATCAGCAACATCCCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGTTT-----------------------------------------------------------------------CGAAATTA------TTA-----------------CCTAC-----------------------------------------------------------------------------------------------TA-TAATACACCA---TAA---TATC----GCT--------------------------------------------------TTCATC-----TC----TTA-----AGATTCACTTTAAG-------A------------------TTTTATTTATTGACA---------TTTGTGTTTCTT-T---TCTTTCTTTGTAATTTCAT-----AACT--TT-TCTACTTCTA------TTTGA--ACACCAC----------------ACCACTACTACATCATCTTGT--AC---AACA----------ACAA---CAACAC----------------------------------------------------------TACAACC-ACCAACC----AACAA----------ACC--AACCATCATCAT------TTGGGAATA-AATTAACCA--ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droKik1 scf7180000302486:1606575-1606959 - GATTAGCAATATACCGATGGATCAGTTCGCTGCCGCCGTTTATCCGCCAGGTGAGGCA-------------------------------------------------------------------GTTGC----------------------------------------TTCC----------------AATG----------------------------------CATA--TATATATATATATATATATATACTACTTATA-TA-----------TAATCTCT--CCTTGCG--------------------CT-GATGGGG------------------TCTTCATC-----GTTTATCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACT--CTCT----TTCTA------TTCGACAA------------AAAAAATATGTAT---ACTTCATCAACACC---AA---AAAA-ACAACAACAAAAA---CACCAACACCACCAACAA----------------------------------------------------------------------------------C--AACCATCA--AA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTTCCCACAATCTACCCACCATCAGCCATGCAATATCAGCCA
droFic1 scf7180000454065:2568976-2569351 + AATCAGCAACATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGATA---------------------------------------------------------------------T--GG---CCAATTGG--------------------GGCGA--TTTA------AATCCG----A---------------------------------------TT--T--------TTA--------------TAATGTTA--------TTGTAATCTCT------GCG--------------------TT-GACGG-GGGTCGTCGTCGTCGGGTCTCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G------------------------CGTTTT--ATATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACT--CTCTC----TCTA------TTCGA--A----------------------TACACCACTTCATCAACACGA--AA---AACA-ACTACAACCAAAA---CACCAC-------------------------------------------------------------------------------------------------CACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCAAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droEle1 scf7180000491193:3341314-3341657 - GATTAGCAATATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGATA-------------------------------------------------------------------TAT-------------------------------------------------------------------------------------------------------------AAATATATATAGATATATA-TATTTATG-TA--------T--TAATCTCT------GCG--------------------TT-AATGG-G------------------TCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACT--CTCTCT--CTCT----CTATTCGA--A----------------------AAC---ACTTCATCAACACA---------ACA-ACTACAACCAAAAAAACACCAC-------------------------------------------------------------------------------------------------CACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droRho1 scf7180000777034:176383-176724 - GATGAGCAATATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGATA-------------------------------------------------------------------TAT--GGTCGTT---------CCG--------------GGCGA--TTTA------ACTCCA----A-------------------------------------TATA----------------------------TAA---TA--------T--TAATCTCT------GCG--------------------TT-GATGG-G------------------TCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACT--CTCTCT--CTCTA------TTCGA--A----------------------TAC---ACTTCATCAACACA---------ACA-ACTACAACCAAAA---CACC----------------------------------------------------------------------------------------------------ACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droBia1 scf7180000300910:2105362-2105697 + CATCAGCAACATACCCATGGATCAGTTCGCAGCCGCTGTTTATCCGCCAGGTGAGATA---------------------------------------C---------------------------TTG--GGTCGTT---------CTGGAC-----------AGTGT--T--------------------------------------------------------------------------------------------TG-TA--------G--TAATCTCT------GCG--------------------TT-GATGG-G------------------TCGTCATC-----GTTTCTCTA-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACT--CTCTC----TCTA------TTCGAAAA------------AA--------AAC---ACTTCATCAACACCAAAAC---AACA-ACTACAACCAAAA----------------------------------------------------------------------------------------------------------CACCAACATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droTak1 scf7180000415356:86528-86875 + GATGAGCAATATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGATA---------------------------------------------------------------------T--GGTCGTT---------CTGC-------------AGCT------------A-CTCCG----A---------------------------------------TA--T-------------------------TAAT---A----TCA-A--TATTCTCC------GCG--------------------TT-GATGG-G------------------TCCTCATCTCTAAG-TTCTCTG-----AGTTTCACTT---G-------G------------------TTTT---GATTGACA---------TTTGTTTTTCTT--------TTCTTTAT-ATTTCAT-----TACT--CTCTC----TCTA------TTCGA--A----------------------TAC---ACTCCATCAACACA---------ACA-ACTACAACCAAAAA--CACCACC----------------------------------------------------------------------------------------------ACCACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droEug1 scf7180000409467:304870-305241 - GATCAGCAACATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGCTT--------------------------------------------------------------------AA--AGTCGTT---------C-------------------GA--TTAAAATGTAGAT-CG----A--G----------------------------------TAT-----------------------------------TA--------T--TAATCTAC------GCC--------------------TTGGATGG-GA--------------ATCTCTTCATC-----GTTTATCTA-----AGTTTCACTT---G-------G------------------TTTT--TGATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TATT--CTCTCT--CTTT----GTATTCGA--AAAACTCAAAAAAAA--------AAC---ACTCCATCAACACA---------ACA----ACAACCAAAAA--AA-----------------------------------------------------------------------------------ACAACACCAC-CA---ACCACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
dm3 chr3L:9100746-9101105 - GATCAGCAATATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGTTA-------------------------------------------------------------------TATGCG-----------------------------------------------------------AAAT----------------------------------TATA--T-------------------------TAATA-TA--------T--TAATCTAT------G---------------------TTT-GATGG-G------------------TCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACG--CTCTCT--TTCT----TAACTCGAAAA----------------------TAC---ACTTCATCAACACA---------ACA-ACTACAACCAAAA---CACCACCACC----------------------------------------------------------ACC-ACCAACCAACCAACCA----------ACCAACACCAACATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droSim2 3l:8877363-8877727 - dsi_1797 GATCAGCAATATACCTATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGTTA-------------------------------------------------------------------TATGCG-----------------------------------------------------------AAAG----------------------------------TATA--AAAAAATATAG-----------------ATA-TA--------T--TAATCTAT--GCTA--------------------TGTTT-GATGG-G------------------TCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACG--CTCTCT--TTCT----TAACTCGATAA----------------------TAC---ACTTCATCAACACA---AC---AACA-ACTACAACCAAAA---CACCACC------------------------------------------------------------AACC-ACCAACC----A---------------CCAACACCAACATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droSec2 scaffold_0:1363335-1363692 - GATCAGCAATATACCTATGGATCAGTTCGCAGCCGCTGTTTATCCGCCAGGTGAGTTA-------------------------------------------------------------------TATGCG-----------------------------------------------------------AAAG----------------------------------TATA--TAAATATATATA-----------------TA-TA--------T--TAATCTAT--GCTA--------------------TGTTT-GATGG-G------------------TCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACG--CTCTCT--TTCT----TAACTCGATAA----------------------TAC---ACTTCATCAACACA---AC---AACA-ACTACAACCAAAA---CACCAC--------------------------------------------------------------------CAACC----A---------------CCAACACCAACATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droYak3 3L:2816968-2817338 + GATCAGCAACATACCCATGGATCAGTTCGCAGCCGCTGTTTATCCGCCAGGTGAGATA---------------------------------------------------------------------T--GCTCGTT---------CTGCTG-----------GGCGACCTTCA-----A-CTTTGAAA-AAAG----------------------------------TATA--T-------------------------TAATA-TA-----TA-T--TAATCTAT------GCG-------------------TTT-GATGG-G------------------TCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACG--CTCTCT--CTCT----ATACTCGA-AA----------------------TAC---ACTTCATCGACACA---------ACAAAATACAACCAC--------CACCACCA------------------------------------------------------------------CC----A---------------CTACCACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droEre2 scaffold_4784:4943629-4943985 + GATCAGCAATATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGTTT---------------------------------------------------------------------T--GATCGTT---------CTGGTG-----------AGCGA--TTCC-----A-TTTCG----AAAG----------------------------------TATA--T-------------------------TAATG-TA--------T--TAATCTGT------GCGT------------------TTT-GATGG-G------------------TCTTCATC-----GTTTATCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TGCG--CTCTCT--TTCTCTCTAAACTCGA--A----------------------TAC---ACTTCATCAACACC--------AACA-ACTACAACCAAA----CAC----------------------------------------------------------------------------------------------------CACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droPer2 scaffold_67:200035-200513 + GATTAGCAATATACCGATGGATCAGTTTGCAGCCGCTGTATATCCGCCAGGTGAGTGCTTACCTCCCCACTAGTTCCACTAGTACGACACACCGGTACTTCTACTATTCGCGGTACAATTTCCCATAAGCG-----------------------------------------------------------AATGGATCTGCTCACAATGGAACTGTTCCCTTTTTGACTATA----------TTTT-----------------TC-TA--------A--CGATC----------------------------------------------------------------------------TATCTG-----AGTA---CTCATCATTTTGCCGCTTTAGTTCTTTGCTCAATTAC--AAAACAATACCTTTCTTTTCGTTTTT----GTTCTTTTTTCTATAT-ATTTCAT-----ATAAATCTCT----TTCTA------T-------------------------------------TTAATCAACAAA---------CAA-ACAACAATCTAC-------TAC---T------------------------CGTACA-------TCGTACATCGTACATCGTACAACA-TCCAACC----A--------------ACCAAAACCATCATCAATGT---GTGGGGAACAATTTAACCAA-ACTTAGTTACTGACTTTACAGCCGCTGGAGTTCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droWil2 scf2_1100000004837:1502614-1502841 + CTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------G-------------C----TTTT----ATT-------------TTGTTTAT----TTTTATTTTTCTTTTT-AT--------------------------------------------------------------------------------ACACA---------CCA-------ATCTCAA---CACCACCACCACCAACAACAACCATCTGTATCTATCTACAAAAACAA-----------------CA-AACCAACCAACC----AACCA----------ACC--AACCAACAACTAT--T--TTGTGGAAC-AATTAACCAAAACCTAGTTACTGACTTTACAGCCGCTGGTGTACCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droVir3 scaffold_13049:1612056-1612393 + dvi_17858 GATTAGCAATATACCCATGGATCAGTTTGCCGCTGCCGTCTATCCGCCAGGTGAGAGA-------------------------------------------------------------------GAT------------------------------------------------------TTTGAGATAAAG----------------------------------TATC--T-------------------------CATAG-T---------T--ACATCAGA------GAGT------------------TTG-TATG----------------------CTTTA-C-----GTTTA--CGATTTCAAGTTCATAT---G-------GCTTTAGTTG-------TGTTTTATAAAACGATA--------------TTTTC----------TTTTTTAT-ATTCCATTT--TTACT--CTCT----TTCTC----CTCTC-----------------------------------------AAACAA---------ACA-ACAACAACAAA-----CAAC------A------------------------------------------------------------------CA----T---------------CTATA--AACAATCTATGTAACGCCGGA-CA-AATTAACCAA-AACTAGTTACTGACTTTACAGCCGCTGGCGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droMoj3 scaffold_6654:2205287-2205637 - dmo_2277 GATTAGCAATATACCCATGGATCAGTTTGCAGCTGCCGTCTATCCGCCAGGTGAGTTT-------------------------------------------------------------------C----AAAAATCAA----TTG-----------------CAAGC--TCTA------AATCCA----A-------------------------------------A--A--T-------------------------CAA---------AGCA---TTG---TGTG----GCT-TTTGTTGAATATTCCATGTAC-TTTGG-G------------------TTGAAATA-----TTTTCTTTG-----ATTTTTT-------------------------------------------T-------------TTTTTTTTTTTT--------TTTTTTGT-ATTCCATTT--ATACT--CT-TC----TCTT------CTCTA-----------------------------------CAACAAC-------------CA-ACAACAACCA----------------------------------------------------------------------------------ATC----A-ACAACAACAACAA-CA--CACAACAATCTATGTAACGCTGGA-CA-AATTAACCAA-AACTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA
droGri2 scaffold_15110:2701950-2702289 + GATGAGCAATATACCGATGGATCAGTTTGCCACTGCCGTCTATCCGCCAGGTGAGCTA---------------------------------------------------------------------A-----CGTTAGATGA--------------------G---A--T-GC-----A-TTTCG----AT------------------------------------TATATAT--ATAT--------------------------------------------------------------------------------------------------------ATATATA-----GTGTCTTTA-----AGTTTCACTTATCG------------AGTTCTT---TCAGTTTT--AAAACGATA---------A----TTTTCTT----------TTTTAT-ATTCCATTTTTTTACT--CTATA----TCTT------CTCAA--C----------------------AAC---ACTACAACAAC--A---------ACA-ACTATAACTACAA---CATC-----------------------------------------------------------------------------------------TA-TA---ACTACAACAAACAATGTTACGCCGGAC-A-TTTTAACCAA-AACTAGTTACTGACTTTACAGCCGCTGGCGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CATCAGCAACATCCCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTTAGTAC---------------------------------------------------------------------G--GAACTTA---------CTAGTATATGATAGTAGTAACC--CCT--------------------------------------------------------------------------------------------------------------ATCC------CCA--------------------AT-GATA--G------------------TCATCAT------------GTG-----AGCTTCACTT---T-------G-------------C----TTTTATTTATTGACA---------TTTGTGTTTCTT-----TCTTTCTTTGTAATTTCAT-----AAAT--ATTTCAACTTCTA------TTTGA--ACACC-------------------ACACTACTTCATCTTCACA---ACTTGAACA-ACTATA------------------------------------------TATGTACAACACCAC-----------------CACAACC-ACCAAAA---AAAACA----------ACC--AACCATCATCAT------TTGGGAATA-AATTAACCA--ACATAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........ACATCCCCATGGATCAGTTCGCAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002100001
.................TGGATCAGTTCGCAGCCGCTGTATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGGAGTGCCAGCCATCTACCCACC......................2911.001100000
....................ATCAGTTCGCAGCCGCTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCTGGAGTGCCAGCC.................................1911.001100000
..........................TCGCAGCCGCTGTATATCCGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
........................GTTCGCAGCCGCTGTATATCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---AAAACA----------ACC--AACCATCC......................................................................................................2011.001010000
..........ATCCCCATGGATCAGTTCGCAGCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACC-ACCAAAA---AAAACA----------...................................................................................................................2011.001010000
...............................GCCGCTGTATATCCGCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACC-ACCAAAA---AAAAG..............................................................................................................................1860.171010000
droBip1
CATCAGCAACATCCCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGTTT-----------------------------------------------------------------------CGAAATTA------TTA-----------------CCTAC-----------------------------------------------------------------------------------------------TA-TAATACACCA---TAA---TATC----GCT--------------------------------------------------TTCATC-----TC----TTA-----AGATTCACTTTAAG-------A------------------TTTTATTTATTGACA---------TTTGTGTTTCTT-T---TCTTTCTTTGTAATTTCAT-----AACT--TT-TCTACTTCTA------TTTGA--ACACCAC----------------ACCACTACTACATCATCTTGT--AC---AACA----------ACAA---CAACAC----------------------------------------------------------TACAACC-ACCAACC----AACAA----------ACC--AACCATCATCAT------TTGGGAATA-AATTAACCA--ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotal
No Reads
droKik1
GATTAGCAATATACCGATGGATCAGTTCGCTGCCGCCGTTTATCCGCCAGGTGAGGCA-------------------------------------------------------------------GTTGC----------------------------------------TTCC----------------AATG----------------------------------CATA--TATATATATATATATATATATACTACTTATA-TA-----------TAATCTCT--CCTTGCG--------------------CT-GATGGGG------------------TCTTCATC-----GTTTATCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACT--CTCT----TTCTA------TTCGACAA------------AAAAAATATGTAT---ACTTCATCAACACC---AA---AAAA-ACAACAACAAAAA---CACCAACACCACCAACAA----------------------------------------------------------------------------------C--AACCATCA--AA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTTCCCACAATCTACCCACCATCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotal
No Reads
droFic1
AATCAGCAACATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGATA---------------------------------------------------------------------T--GG---CCAATTGG--------------------GGCGA--TTTA------AATCCG----A---------------------------------------TT--T--------TTA--------------TAATGTTA--------TTGTAATCTCT------GCG--------------------TT-GACGG-GGGTCGTCGTCGTCGGGTCTCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G------------------------CGTTTT--ATATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACT--CTCTC----TCTA------TTCGA--A----------------------TACACCACTTCATCAACACGA--AA---AACA-ACTACAACCAAAA---CACCAC-------------------------------------------------------------------------------------------------CACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCAAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotal
No Reads
droEle1
GATTAGCAATATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGATA-------------------------------------------------------------------TAT-------------------------------------------------------------------------------------------------------------AAATATATATAGATATATA-TATTTATG-TA--------T--TAATCTCT------GCG--------------------TT-AATGG-G------------------TCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACT--CTCTCT--CTCT----CTATTCGA--A----------------------AAC---ACTTCATCAACACA---------ACA-ACTACAACCAAAAAAACACCAC-------------------------------------------------------------------------------------------------CACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotal
No Reads
droRho1
GATGAGCAATATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGATA-------------------------------------------------------------------TAT--GGTCGTT---------CCG--------------GGCGA--TTTA------ACTCCA----A-------------------------------------TATA----------------------------TAA---TA--------T--TAATCTCT------GCG--------------------TT-GATGG-G------------------TCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACT--CTCTCT--CTCTA------TTCGA--A----------------------TAC---ACTTCATCAACACA---------ACA-ACTACAACCAAAA---CACC----------------------------------------------------------------------------------------------------ACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotal
No Reads
droBia1
CATCAGCAACATACCCATGGATCAGTTCGCAGCCGCTGTTTATCCGCCAGGTGAGATA---------------------------------------C---------------------------TTG--GGTCGTT---------CTGGAC-----------AGTGT--T--------------------------------------------------------------------------------------------TG-TA--------G--TAATCTCT------GCG--------------------TT-GATGG-G------------------TCGTCATC-----GTTTCTCTA-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACT--CTCTC----TCTA------TTCGAAAA------------AA--------AAC---ACTTCATCAACACCAAAAC---AACA-ACTACAACCAAAA----------------------------------------------------------------------------------------------------------CACCAACATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotal
No Reads
droTak1
GATGAGCAATATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGATA---------------------------------------------------------------------T--GGTCGTT---------CTGC-------------AGCT------------A-CTCCG----A---------------------------------------TA--T-------------------------TAAT---A----TCA-A--TATTCTCC------GCG--------------------TT-GATGG-G------------------TCCTCATCTCTAAG-TTCTCTG-----AGTTTCACTT---G-------G------------------TTTT---GATTGACA---------TTTGTTTTTCTT--------TTCTTTAT-ATTTCAT-----TACT--CTCTC----TCTA------TTCGA--A----------------------TAC---ACTCCATCAACACA---------ACA-ACTACAACCAAAAA--CACCACC----------------------------------------------------------------------------------------------ACCACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotal
No Reads
droEug1
GATCAGCAACATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGCTT--------------------------------------------------------------------AA--AGTCGTT---------C-------------------GA--TTAAAATGTAGAT-CG----A--G----------------------------------TAT-----------------------------------TA--------T--TAATCTAC------GCC--------------------TTGGATGG-GA--------------ATCTCTTCATC-----GTTTATCTA-----AGTTTCACTT---G-------G------------------TTTT--TGATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TATT--CTCTCT--CTTT----GTATTCGA--AAAACTCAAAAAAAA--------AAC---ACTCCATCAACACA---------ACA----ACAACCAAAAA--AA-----------------------------------------------------------------------------------ACAACACCAC-CA---ACCACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotal
No Reads
dm3
GATCAGCAATATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGTTA-------------------------------------------------------------------TATGCG-----------------------------------------------------------AAAT----------------------------------TATA--T-------------------------TAATA-TA--------T--TAATCTAT------G---------------------TTT-GATGG-G------------------TCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACG--CTCTCT--TTCT----TAACTCGAAAA----------------------TAC---ACTTCATCAACACA---------ACA-ACTACAACCAAAA---CACCACCACC----------------------------------------------------------ACC-ACCAACCAACCAACCA----------ACCAACACCAACATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAA------TTGGGAAAC-AATTAA............................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGGAGTGCCAGCCATC..............................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AGCAATATACCCATGGATCAGTTCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GG-G------------------TCTTCATC-----GTTTCTCTG-----AGTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTCAGCCATGCAATAT......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GATCAGTTCGCAGCCGCTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GTTCGCAGCCGCTGTATATCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGCCATGCAATATC.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTACAGCCGCTGGAGTGCCAGCCATC..............................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................A-TA--------T--TAATCTAT------G---------------------TTT-GATGG-G------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAA-ACCTAGTTACTGACTTT......................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCACCTTCAGCCATGCA..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCCGCTGGAGTGCCA....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCACCTTCAGCCATGCAATATCA....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CATGGATCAGTTCGCAGCCGCTGTATATCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCAGTTCGCAGCCGCTGTATATCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAGTGCCAGCCATC..............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTACAGCCGCTGGAGTGCCA....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCACCTTCAGCCATGCAAT........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TGGATCAGTTCGCAGCCGCTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGTGCCAGCCATCTA............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GGATCAGTTCGCAGCCGCTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTTTACAGCCGCTGGAGTGCC.....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCCGCTGGAGTGCC.....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCACC----------------------------------------------------------ACC-ACCAACCA.....................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-ACCAACCAACCAACCA----------ACCA...............................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GATCAGCAATATACCTATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGTTA-------------------------------------------------------------------TATGCG-----------------------------------------------------------AAAG----------------------------------TATA--AAAAAATATAG-----------------ATA-TA--------T--TAATCTAT--GCTA--------------------TGTTT-GATGG-G------------------TCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACG--CTCTCT--TTCT----TAACTCGATAA----------------------TAC---ACTTCATCAACACA---AC---AACA-ACTACAACCAAAA---CACCACC------------------------------------------------------------AACC-ACCAACC----A---------------CCAACACCAACATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------TTGGGAAAC-AATTA.............................................................................1512.00200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------TTGGGAAAC-AATTAC............................................................................16160.06100000000001000000
droSec2
GATCAGCAATATACCTATGGATCAGTTCGCAGCCGCTGTTTATCCGCCAGGTGAGTTA-------------------------------------------------------------------TATGCG-----------------------------------------------------------AAAG----------------------------------TATA--TAAATATATATA-----------------TA-TA--------T--TAATCTAT--GCTA--------------------TGTTT-GATGG-G------------------TCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACG--CTCTCT--TTCT----TAACTCGATAA----------------------TAC---ACTTCATCAACACA---AC---AACA-ACTACAACCAAAA---CACCAC--------------------------------------------------------------------CAACC----A---------------CCAACACCAACATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................ATGGATCAGTTCGCAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
...........TACCTATGGATCAGTTCGCAGCCGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
................ATGGATCAGTTCGCAGCCGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.................................CGCTGTTTATCCGCCAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010010
droYak3
GATCAGCAACATACCCATGGATCAGTTCGCAGCCGCTGTTTATCCGCCAGGTGAGATA---------------------------------------------------------------------T--GCTCGTT---------CTGCTG-----------GGCGACCTTCA-----A-CTTTGAAA-AAAG----------------------------------TATA--T-------------------------TAATA-TA-----TA-T--TAATCTAT------GCG-------------------TTT-GATGG-G------------------TCTTCATC-----GTTTCTCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TACG--CTCTCT--CTCT----ATACTCGA-AA----------------------TAC---ACTTCATCGACACA---------ACAAAATACAACCAC--------CACCACCA------------------------------------------------------------------CC----A---------------CTACCACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................ATGGATCAGTTCGCAGCCGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
........ACATACCCATGGATCAGTTCGCAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
........ACATACCCATGGATCAGTTCGCAGCCGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
droEre2
GATCAGCAATATACCCATGGATCAGTTCGCAGCCGCTGTATATCCGCCAGGTGAGTTT---------------------------------------------------------------------T--GATCGTT---------CTGGTG-----------AGCGA--TTCC-----A-TTTCG----AAAG----------------------------------TATA--T-------------------------TAATG-TA--------T--TAATCTGT------GCGT------------------TTT-GATGG-G------------------TCTTCATC-----GTTTATCTG-----AGTTTCACTT---G-------G------------------TTTT----ATTGACA---------TTTGTTTTTCTT--------TTCTTTGT-ATTTCAT-----TGCG--CTCTCT--TTCTCTCTAAACTCGA--A----------------------TAC---ACTTCATCAACACC--------AACA-ACTACAACCAAA----CAC----------------------------------------------------------------------------------------------------CACCACCATCAA------TTGGGAAAC-AATTAACCAA-ACCTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................ATGGATCAGTTCGCAGCCGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.......AATATACCCATGGATCAGTTCGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...........................CGCAGCCGCTGTATATCCGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
droPer2
GATTAGCAATATACCGATGGATCAGTTTGCAGCCGCTGTATATCCGCCAGGTGAGTGCTTACCTCCCCACTAGTTCCACTAGTACGACACACCGGTACTTCTACTATTCGCGGTACAATTTCCCATAAGCG-----------------------------------------------------------AATGGATCTGCTCACAATGGAACTGTTCCCTTTTTGACTATA----------TTTT-----------------TC-TA--------A--CGATC----------------------------------------------------------------------------TATCTG-----AGTA---CTCATCATTTTGCCGCTTTAGTTCTTTGCTCAATTAC--AAAACAATACCTTTCTTTTCGTTTTT----GTTCTTTTTTCTATAT-ATTTCAT-----ATAAATCTCT----TTCTA------T-------------------------------------TTAATCAACAAA---------CAA-ACAACAATCTAC-------TAC---T------------------------CGTACA-------TCGTACATCGTACATCGTACAACA-TCCAACC----A--------------ACCAAAACCATCATCAATGT---GTGGGGAACAATTTAACCAA-ACTTAGTTACTGACTTTACAGCCGCTGGAGTTCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................TGCAGCCGCTGTATATCCGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
......................CAGTTTGCAGCCGCTGTATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..........ATACCGATGGATCAGTTTGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-------TCGTACATCGTACATCGT....................................................................................................................................................2160.171001000
droWil2
CTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------G-------------C----TTTT----ATT-------------TTGTTTAT----TTTTATTTTTCTTTTT-AT--------------------------------------------------------------------------------ACACA---------CCA-------ATCTCAA---CACCACCACCACCAACAACAACCATCTGTATCTATCTACAAAAACAA-----------------CA-AACCAACCAACC----AACCA----------ACC--AACCAACAACTAT--T--TTGTGGAAC-AATTAACCAAAACCTAGTTACTGACTTTACAGCCGCTGGTGTACCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACTGACTTTACAGCCGCTGGTGT........................................2711.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CACCACCACCACCAACAACAAC...............................................................................................................................................................................................2570.14101000
droVir3
GATTAGCAATATACCCATGGATCAGTTTGCCGCTGCCGTCTATCCGCCAGGTGAGAGA-------------------------------------------------------------------GAT------------------------------------------------------TTTGAGATAAAG----------------------------------TATC--T-------------------------CATAG-T---------T--ACATCAGA------GAGT------------------TTG-TATG----------------------CTTTA-C-----GTTTA--CGATTTCAAGTTCATAT---G-------GCTTTAGTTG-------TGTTTTATAAAACGATA--------------TTTTC----------TTTTTTAT-ATTCCATTT--TTACT--CTCT----TTCTC----CTCTC-----------------------------------------AAACAA---------ACA-ACAACAACAAA-----CAAC------A------------------------------------------------------------------CA----T---------------CTATA--AACAATCTATGTAACGCCGGA-CA-AATTAACCAA-AACTAGTTACTGACTTTACAGCCGCTGGCGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................GTGAGAGA-------------------------------------------------------------------GAT------------------------------------------------------TTTGAGATAAAG----------------------------------TA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000020000000000000000000000000000000000
.....GCAATATACCCATGGATCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACCCACCTTCAGCCA..............1811.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTTACTGACTTTACAGCCGCT.............................................2511.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................T-------------------------CATAG-T---------T--ACATCAGA------GAGT------------------TTG-TA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTACCCACCTTCAGCCAT.............2111.001000000000000000000010000000000000000000000000000000000000000000
.ATTAGCAATATACCCATGGATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACA-ACAACAACAAA-----CAAC------A------------------------------------------------------------------........................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-ACAACAACAAA-----CAAC------A------------------------------------------------------------------........................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACA-ACAACAACAAA-----CAAC------...........................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GATTAGCAATATACCCATGGATCAGTTTGCAGCTGCCGTCTATCCGCCAGGTGAGTTT-------------------------------------------------------------------C----AAAAATCAA----TTG-----------------CAAGC--TCTA------AATCCA----A-------------------------------------A--A--T-------------------------CAA---------AGCA---TTG---TGTG----GCT-TTTGTTGAATATTCCATGTAC-TTTGG-G------------------TTGAAATA-----TTTTCTTTG-----ATTTTTT-------------------------------------------T-------------TTTTTTTTTTTT--------TTTTTTGT-ATTCCATTT--ATACT--CT-TC----TCTT------CTCTA-----------------------------------CAACAAC-------------CA-ACAACAACCA----------------------------------------------------------------------------------ATC----A-ACAACAACAACAA-CA--CACAACAATCTATGTAACGCTGGA-CA-AATTAACCAA-AACTAGTTACTGACTTTACAGCCGCTGGAGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGCTGGA-CA-AATTAACCA.........................................................................2211.001100000
......................CAGTTTGCAGCTGCCGTCTATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACCTTCAGCCATGCAATATCAGCC.2711.001000010
droGri2
GATGAGCAATATACCGATGGATCAGTTTGCCACTGCCGTCTATCCGCCAGGTGAGCTA---------------------------------------------------------------------A-----CGTTAGATGA--------------------G---A--T-GC-----A-TTTCG----AT------------------------------------TATATAT--ATAT--------------------------------------------------------------------------------------------------------ATATATA-----GTGTCTTTA-----AGTTTCACTTATCG------------AGTTCTT---TCAGTTTT--AAAACGATA---------A----TTTTCTT----------TTTTAT-ATTCCATTTTTTTACT--CTATA----TCTT------CTCAA--C----------------------AAC---ACTACAACAAC--A---------ACA-ACTATAACTACAA---CATC-----------------------------------------------------------------------------------------TA-TA---ACTACAACAAACAATGTTACGCCGGAC-A-TTTTAACCAA-AACTAGTTACTGACTTTACAGCCGCTGGCGTGCCAGCCATCTACCCACCTTCAGCCATGCAATATCAGCCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
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Generated: 05/18/2015 at 05:17 AM