dan_2720

exon [dana_GLEANR_10789:4]; CDS [Dana\GF10831-cds]; exon [dana_GLEANR_10789:5]; CDS [Dana\GF10831-cds]; intron [Dana\GF10831-in]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATGTGTGGTTCTTGTTCCAACGAAAATGCCTATAAGGCCATTTTCATTTGGTGAGTTTTGAGAAAAACCAAGATTTATGATTATTATTTAAAAATATTTAAATCAATAAATGAGAAAAAGCTTTCAATGGGGAGCCATGGTTACCAGAAAGCGTCGATACTTCTGTTCTTAAAACCTTAATTCCATAACTAAAAAAATATATGTGCATTTTTTTGTCCTTGATAGGTATCAGAACAAACTCCGTGGAAATACCCCCCTTACCGATCAGGAGAGAA ************************************************....((((((((((.(((((...(((((..((((((((((((....))))))).)))))))))).....((((((....))))))..)))))..(((((...........)))))))))))))))..............(((((((((........)))))))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V105 male body	V106 head	V055 head
...................................................................................................................................................................................................................................ATCAGAACAAACTCCGTGGAA...........................	21	0	1	2.00	2	2	0	0	0	0
..........................................................................................................................................................................................................................................CAAACTCCGTGGAAATACCCCCCTTACC.............	28	0	1	1.00	1	0	1	0	0	0
.............................CTATAAGGCCATTTTCATTTG.................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................ATTTGGTATCAGAACAAACTCCGTGGAA...........................	28	3	1	1.00	1	0	1	0	0	0
..GTATGGTTCTTGTTCCAACGAA...........................................................................................................................................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................................................................GTGGAAATACCCCCCTTACC.............	20	0	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................TACCCCCCTTACCGATCAGGAGA...	23	0	1	1.00	1	0	0	1	0	0
....GTGGTTCTTGTTCCAACGAAA..........................................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................................AACTCCGTGGAAATACCTCCCT.................	22	1	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................AGAACAAACTCCGTGGGAATACC......................	23	1	1	1.00	1	0	0	0	1	0
..........................TGCCTATAAGGCCGTATCCA.....................................................................................................................................................................................................................................	20	3	4	0.25	1	0	0	0	0	1
......................................CATTGTCATGTGGGGAGTTT.........................................................................................................................................................................................................................	20	3	20	0.15	3	3	0	0	0	0
.....................................................................................................................................GCCATATCTACCAGAAAGC...........................................................................................................................	19	3	20	0.15	3	2	0	0	1	0
......................................CATTGTCAGTTGGGGAGTTT.........................................................................................................................................................................................................................	20	3	20	0.10	2	2	0	0	0	0
.....................................................................................................ATCAAAAAATGAGAATAAG...........................................................................................................................................................	19	2	15	0.07	1	0	0	1	0	0

TACACACCAAGAACAAGGTTGCTTTTACGGATATTCCGGTAAAAGTAAACCACTCAAAACTCTTTTTGGTTCTAAATACTAATAATAAATTTTTATAAATTTAGTTATTTACTCTTTTTCGAAAGTTACCCCTCGGTACCAATGGTCTTTCGCAGCTATGAAGACAAGAATTTTGGAATTAAGGTATTGATTTTTTTATATACACGTAAAAAAACAGGAACTATCCATAGTCTTGTTTGAGGCACCTTTATGGGGGGAATGGCTAGTCCTCTCTT ************************************************....((((((((((.(((((...(((((..((((((((((((....))))))).)))))))))).....((((((....))))))..)))))..(((((...........)))))))))))))))..............(((((((((........)))))))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V039 embryo	M058 embryo	V055 head	V106 head
........................................................................................................TTATTTCCTCTGTCTCGAAAGTT....................................................................................................................................................	23	3	1	1.00	1	1	0	0	0
.............................................................................................................TGCTCTTTCTCGATAGTTA...................................................................................................................................................	19	3	20	0.10	2	0	1	1	0
...............................................................................................................CTCTTTCTCGATAGTTACAC................................................................................................................................................	20	3	17	0.06	1	0	1	0	0
..............................................................................................................ACTCTTTCTCGATAGTTAG..................................................................................................................................................	19	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13337:19278299-19278573 +	dan_2720	ATGTGTGGTTCTTGTTCCAACGAAAATGCCTATAAGGCCATTTTCATTTGGTGAGTTTTG----------AGA---------------------------------------------------------------------A---AAACCAAGATTTATGATTATTATTTAAAAA-TATTTAAATCAATAAATGAGAAAAAGCTTTCAATGGGGA-------------------------------GCCATGGTTACCAGAAAGCGTCGATACTTCTGTTCTTAAAACC-TT-----AATTCCATAAC-------T-----AAAAAAATATATGT---------------------------------------------------------------G-------------------------------------------------------------------CA--------TTTTTT-----TGTCCTTGATAGGTATCAGAACAAACTCCGTGGAAATACCCCCCTTACCGATCAGGAGAGAA
droBip1	scf7180000396360:469426-469694 +		ATGTGTGGTTCTTGTTCCAACGAAAATGCCTATAAGGCTATTTTTATTTGGTAAGTATTT----------ATG------------------------------------------------------------------------------AATATTTATGATTATTAACTAA-AG-TGATAAGATCAATAATGGGGGAAAAGCTTTTAATGGGCA-------------------------------GTCATGGTTACCAGAAAACGTTGTTACTTCTGTCCTCAATACC-TT-----AATTACCTC-------TATAATT-----AAATATCCCT---------------------------------------------------------------G-------------------------------------------------------------------AA--CT--TT---TCT-----TGTCTCTCCCAGGTATCAGAACAAACTTCGTGGAAATACCCCTCTTACTGATCAGGAGAGAA
droKik1	scf7180000302686:435649-435835 -		ATGTGCGGCTCTTGCTCAAACGAAAATGCTTACAAGAGTATTTTTATATGGTGAGTTACTATAT----------TGAT------TTT---TAACTAACTTAA--ATTGAGAG----------------------------------------------------------------------------------------------------------------CTTTC-----------------------------------------------CTG-----------------------------------TATAAAT---------------------------------------------------------------T---------------------AAAAT-A------------------------------TC-----------------------A-ACT--TT---TTA--T--ATTTCCCTTAAGGTACCAAAACAAACTACGTGGAAATACTCCTCTCACAGAGCAAGAGAAAA
droFic1	scf7180000454113:2317341-2317545 +		ATGTGTGGCTCTTGTTCAAATGAAAATGCATACAAGAGCATCTTTATCTGGTAAGTGAAT----------ATTTGT--TTAGATTTT---ATA--------------------------------------------------------------------------------------------------------------------CTACATG--------CTTAC-----------------------------------------------CTG-----------------------------------CCTTCTA---------------------------------------------------------------T---------------------AAAAT-ATTATTCAACATTTATTTTATAATTTATTACTC-----------------------T--------CTT--------TTTTATCTTTAGGTACCAAAACAAAGTTCGCGGCGGTAAACCACTTACCGAGCAGGAGAAGA
droEle1	scf7180000491193:4278544-4278737 -		ATGTGTGGTTCGTGTTCAAATGAAAATGCATATAAGAGCATCTTTATCTGGTAGGTTTTTTAAGTGTATA------------------------GATCTTAC--TTC--GAGATTTGC----ATAGAAAATGTAAAGGATCAA---AAACGAATACTTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------A-------------------------------------------------------------------TT--------ACT--------TTTCCTCTGTAGGTACCAAAACAAACTACGCGGAAATAAGCCGCTTACCGAGCAAGAGAAAA
droRho1	scf7180000777710:43083-43293 +		ATGTGTGGTTCGTGTTCAAATGAAAATGCATATAAGAGCATCTTTATCTGGTAAGTTTCG----------AAACCCATC------GT---AA---ATTTTACTT----AGAGCCTTGAGAATTCCGAAAACGTAAAA-----ATAAAT-ATAATATTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------A-----------------------------------TTTCTAAATC-----------------------A-ATT--TG---TTT-----TTTTCGCTTTAGGTATCAAAACAAACTTCGCGGCAATACGCCCCTTACCGAGCAAGAGAAAA
droBia1	scf7180000302193:2769648-2769879 -		ATGTGCGGCTCGTGCTCGAATGAGAACGCCTACAAGAGCATCTTTATCTGGTAAGACTTA----------GAAAACATC------T--------------------T-----------------------------AGAAGAA---AAAT-------------------------------------------------------------AGAAAATTATATATTTACTTGTGAAGTAATGAATTAACTGTGGATATTA--------------------------------------------------------TAATGCAACGT--------G---------------------------------------------------------------T--------------------------AAAT----ATTAGTTATTA-----------------------G-CTATATTA---CC-----TATTTTGCACAGGTACCAAAACAAGCTTCGCGGTAACAAACCCCTCACTGAGCAGGAGAAGA
droTak1	scf7180000415392:139653-139853 +		ATGTGTGGTTCGTGTTCAAATGAAAATGCATATAAGAGCATCTTTATCTGGTAAGATTGA----------AAA---------------------------------------------------------------------ATAAATTCAAATATTTCCTATTTTAATTTGTAGACTATTTATAACATTTAA----------------------------------------------------------------------------------------------------------------TAAC----GGAAATTGTATTTT--------T---------------------------------------------------------------G-------------------------------------------------------------------TT--------TTA--------CTTTCTATGTAGGTACCAAAGCAAACTTCGCGGTAATACACCCCTTACCGAGCAGGAGAAAT
droEug1	scf7180000409466:4957045-4957241 +		ATGTGTGGTTCGTGCTCAAATGAAAATGCATACAAGAGCATCTTTATCTGGTGAGTTATA----------AGC-------------------------------------------------A---------------------------------------------------------------------------------------TAG----------------------------------------------------------------------------------------------------GGAATTTGTGTTTT--------C---------------------------------------------------------------GGTAGTTAA-GATA------------------------------ACAGATATACATATTATTGCATTGTAAACT--TT---TATCATATTTTTATCAATAGGTACCAAAACAAACTTCGCGGCAATGCACCCCTTACCGAGCAGGAGAAAA
dm3	chr3L:19992234-19992437 -		ATGTGTGGTTCATGCTCGAATGAAAATGCCTACAAGAGCATCTTCATATGGTGAGTACTA----------AAGTCT--TTAGTTTTAGTCATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCAGCCTTTTTAAGTAT-TAAAGTTA-----AACCCTGTTGGAATGCTGTAACGT--------GCTG------------------------------------------------------------C-------------------------------------------------------------------AA--------ATA--------TTTCGTTTTCAGGTACCAGAACAAACTTCGTGGTAATGCACCTCTTACCGAGCAGGAGAAGA
droSim2	3l:19585026-19585234 -	dsi_20726	ATGTGTGGATCGTGCTCAAATGAAAATGCCTACAAGAGCATCTTCATATGGTGTGTACTA----------AAGTCT--CTAGTCTTAGTCATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAGCCTTTTTAAGTAT-TTAAGTTA-----ATACCTGTTGGAATGCTGTAACGTAATATTCCG---------------------------------------------------------------G-------------------------------------------------------------------TA--------ATA--------TTTCGTCTTTAGGTACCAGAACAAACTTCGTGGCAATGCACCTCTTACCGAGCAGGAGAAGA
droSec2	scaffold_29:637096-637296 -		ATGTGTGGATCGTGCTCAAATGAAAATGCCTACAAGAGCATCTTCATATGGTGTGTACTA----------AAGTCT--CTAGTTTTAGTCATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAGCCTTTTTAAGTAT-TTAAGTTG-----ATACCTGTTGGAATGCTGTAACGT--------G---------------------------------------------------------------G-------------------------------------------------------------------TA--------ATA--------TTTCGTCTTTAGGTACCAGAACAAACTTCGTGGCAATGCACCTCTTACCGAGCAGGAGAAGA
droYak3	3L:20576654-20576879 +	dya_842	ATGTGTGGTTCGTGTTCAAACGAAAATGCGTACAAGAGCATCTTTATATGGTGAGTACTG----------AAACAT--CTAAGTCTAGTCA----------CTG----GGACCCCCCAG-----------------------------------------------------------------------------------A-------------------------------------------------------AAGAAAGCCTTCTTACAACCTTTCCAAATAT-GTTAGTTA-----CCTAATTTAAGGATGTTGTAACAC--------G---------------------------------------------------------------G-------------------------------------------------------------------AT--------ATT--------TTTCGCCTCTAGGTACCAGAACAAACTTCGGGGTAATACACCTCTTACCGAGCAGGAGAAGA
droEre2	scaffold_4784:19731366-19731533 -		ATGTGTGGTTCGTGTTCAAACGAAAATGCATATAAGAGCATCTTCATATGGTGAGTGTAT------------------CTAG------C---------T-ACTG----GGAGACCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTAGAATGTAGTACAAT--------G---------------------------------------------------------------G-------------------------------------------------------------------TG--------ATT--------TTTCGCCTATAGGTACCAGAACAAACTTCGTGGCAATACACCTCTTACCGAGCAGGAGAAGA
droPer2	scaffold_88:21695-21947 +		ATGTGTGGGTCATGTTCAAACGAAAATGCATATAAAAGCATTTTTATATGGTAAGTTTGTTTAT----------GGTT------CT--------GTT-CTAT--TAT---------------------------------------------------------------------------------------GGGAAATAA-------------------------------------------------------AAGAAAACCTTCT----------------------------------------------------------------------------------GTCCGTTGCTAATGGTAATCATCCTTAAGGCGGGGGACTTGTTATGAGCGATTAA-AA-CCCCTTCAACATATATTT-CTAATTCTTAAAAA-----------------------A--------------------ATTTTTTCCAGGTATCAAAATAAAGTTCGTGGAACGGCAGCCTTTACGGAACAGGAAAAAT
droWil2	scf2_1100000004540:944525-944685 +		ATGTGCGGGTCATGTTCGAATGAAAATGCCTACAAAAGCATCTTTATTTGGTAGGTCTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACG-----AAATGTAATC---AGAACTTTCCATTTACCGATTTCTAAT----------------------------------------------------------------------------------------------------------------------------GGTCTTTCAGGTATCAAAATAAGATGAGGGGAAATGTTGGCTTCACCGAAAATGAGATGA
droVir3	scaffold_13049:17932352-17932535 +		ATGTGTGGATCATGTTCAAACGAAAATGCTTTCAAGAGCATTTTCCTTTGGTATGTAACG------TTTAAAGC------------------------CCAT--TTT---------------------------------------------------------------------------------------GAGAAACATTTTACCATAGATA-------------------------------ATTAT------------------------TCG--------------------------------------------------------------------------------------------------TTTTAATGGAA-----------G-------------------------------------------------------------------TA--------TTG--------TTATTTCTTCAGGTACCAAACTAAAATTCGAGGAGAAAAGGGATTCACTGCAGAAGAGATGA
droMoj3	scaffold_6680:23360373-23360478 +		AACGTTAACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----AATTATTTT-------AATAATG-----AAT------G--G------------------------------------------------------------T-------------------------------------------------------------------AA--------ATTTAT-----GGATTTCATCAGGTATCAAAATAAAACTCGAGGAGACGCCGGATTTACTATAGATGAGATCG
droGri2	scaffold_15110:23964799-23964854 +		ATGTGTGGCTCATGCTCAAACGAAAATGCTTTTAAGAGCATTTTCATTTGGTATGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

ATGTGTGGTTCTTGTTCCAACGAAAATGCCTATAAGGCCATTTTCATTTGGTGAGTTTTG----------AGA---------------------------------------------------------------------A---AAACCAAGATTTATGATTATTATTTAAAAA-TATTTAAATCAATAAATGAGAAAAAGCTTTCAATGGGGA-------------------------------GCCATGGTTACCAGAAAGCGTCGATACTTCTGTTCTTAAAACC-TT-----AATTCCATAAC-------T-----AAAAAAATATATGT---------------------------------------------------------------G-------------------------------------------------------------------CA--------TTTTTT-----TGTCCTTGATAGGTATCAGAACAAACTCCGTGGAAATACCCCCCTTACCGATCAGGAGAGAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAACAAACTCCGTGGAA...........................	21	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACTCCGTGGAAATACCCCCCTTACC.............	28	1	1.00	1	0	1	0	0	0	0
.............................CTATAAGGCCATTTTCATTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAATACCCCCCTTACC.............	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCCCCTTACCGATCAGGAGA...	23	1	1.00	1	0	0	0	0	1	0
....GTGGTTCTTGTTCCAACGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droBip1

ATGTGTGGTTCTTGTTCCAACGAAAATGCCTATAAGGCTATTTTTATTTGGTAAGTATTT----------ATG------------------------------------------------------------------------------AATATTTATGATTATTAACTAA-AG-TGATAAGATCAATAATGGGGGAAAAGCTTTTAATGGGCA-------------------------------GTCATGGTTACCAGAAAACGTTGTTACTTCTGTCCTCAATACC-TT-----AATTACCTC-------TATAATT-----AAATATCCCT---------------------------------------------------------------G-------------------------------------------------------------------AA--CT--TT---TCT-----TGTCTCTCCCAGGTATCAGAACAAACTTCGTGGAAATACCCCTCTTACTGATCAGGAGAGAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATGTGCGGCTCTTGCTCAAACGAAAATGCTTACAAGAGTATTTTTATATGGTGAGTTACTATAT----------TGAT------TTT---TAACTAACTTAA--ATTGAGAG----------------------------------------------------------------------------------------------------------------CTTTC-----------------------------------------------CTG-----------------------------------TATAAAT---------------------------------------------------------------T---------------------AAAAT-A------------------------------TC-----------------------A-ACT--TT---TTA--T--ATTTCCCTTAAGGTACCAAAACAAACTACGTGGAAATACTCCTCTCACAGAGCAAGAGAAAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATGTGTGGCTCTTGTTCAAATGAAAATGCATACAAGAGCATCTTTATCTGGTAAGTGAAT----------ATTTGT--TTAGATTTT---ATA--------------------------------------------------------------------------------------------------------------------CTACATG--------CTTAC-----------------------------------------------CTG-----------------------------------CCTTCTA---------------------------------------------------------------T---------------------AAAAT-ATTATTCAACATTTATTTTATAATTTATTACTC-----------------------T--------CTT--------TTTTATCTTTAGGTACCAAAACAAAGTTCGCGGCGGTAAACCACTTACCGAGCAGGAGAAGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATGTGTGGTTCGTGTTCAAATGAAAATGCATATAAGAGCATCTTTATCTGGTAGGTTTTTTAAGTGTATA------------------------GATCTTAC--TTC--GAGATTTGC----ATAGAAAATGTAAAGGATCAA---AAACGAATACTTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------A-------------------------------------------------------------------TT--------ACT--------TTTCCTCTGTAGGTACCAAAACAAACTACGCGGAAATAAGCCGCTTACCGAGCAAGAGAAAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATGTGTGGTTCGTGTTCAAATGAAAATGCATATAAGAGCATCTTTATCTGGTAAGTTTCG----------AAACCCATC------GT---AA---ATTTTACTT----AGAGCCTTGAGAATTCCGAAAACGTAAAA-----ATAAAT-ATAATATTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------A-----------------------------------TTTCTAAATC-----------------------A-ATT--TG---TTT-----TTTTCGCTTTAGGTATCAAAACAAACTTCGCGGCAATACGCCCCTTACCGAGCAAGAGAAAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATGTGCGGCTCGTGCTCGAATGAGAACGCCTACAAGAGCATCTTTATCTGGTAAGACTTA----------GAAAACATC------T--------------------T-----------------------------AGAAGAA---AAAT-------------------------------------------------------------AGAAAATTATATATTTACTTGTGAAGTAATGAATTAACTGTGGATATTA--------------------------------------------------------TAATGCAACGT--------G---------------------------------------------------------------T--------------------------AAAT----ATTAGTTATTA-----------------------G-CTATATTA---CC-----TATTTTGCACAGGTACCAAAACAAGCTTCGCGGTAACAAACCCCTCACTGAGCAGGAGAAGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATGTGTGGTTCGTGTTCAAATGAAAATGCATATAAGAGCATCTTTATCTGGTAAGATTGA----------AAA---------------------------------------------------------------------ATAAATTCAAATATTTCCTATTTTAATTTGTAGACTATTTATAACATTTAA----------------------------------------------------------------------------------------------------------------TAAC----GGAAATTGTATTTT--------T---------------------------------------------------------------G-------------------------------------------------------------------TT--------TTA--------CTTTCTATGTAGGTACCAAAGCAAACTTCGCGGTAATACACCCCTTACCGAGCAGGAGAAAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATGTGTGGTTCGTGCTCAAATGAAAATGCATACAAGAGCATCTTTATCTGGTGAGTTATA----------AGC-------------------------------------------------A---------------------------------------------------------------------------------------TAG----------------------------------------------------------------------------------------------------GGAATTTGTGTTTT--------C---------------------------------------------------------------GGTAGTTAA-GATA------------------------------ACAGATATACATATTATTGCATTGTAAACT--TT---TATCATATTTTTATCAATAGGTACCAAAACAAACTTCGCGGCAATGCACCCCTTACCGAGCAGGAGAAAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATGTGTGGTTCATGCTCGAATGAAAATGCCTACAAGAGCATCTTCATATGGTGAGTACTA----------AAGTCT--TTAGTTTTAGTCATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCAGCCTTTTTAAGTAT-TAAAGTTA-----AACCCTGTTGGAATGCTGTAACGT--------GCTG------------------------------------------------------------C-------------------------------------------------------------------AA--------ATA--------TTTCGTTTTCAGGTACCAGAACAAACTTCGTGGTAATGCACCTCTTACCGAGCAGGAGAAGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACAAACTTCGTGGTAATGC.......................	22	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AAGAGCATCTTCATATGGTACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	9.50	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAACTTCGTGGTAATG........................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATGCTCGAATGAAAATGCCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AAGAGCATCTTCATATGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ACAAGAGCATCTTCATAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTCGTGGTAATGCACCTCTTAC..............	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ATGAAAATGCCTACAAGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAATGCACCTCTTACCGAGCAGG......	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCGTGGTAATGCACCTCTTACC.............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAATGCACCTCTTACCGAGCAGGA.....	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGCACCTCTTACCGAGCAGGAGA...	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGCACCTCTTACCGAGCA........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CGT--------GCTG------------------------------------------------------------C-------------------------------------------------------------------AA--------ATA--------TTTCGTTTTCAG..................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATGTGTGGATCGTGCTCAAATGAAAATGCCTACAAGAGCATCTTCATATGGTGTGTACTA----------AAGTCT--CTAGTCTTAGTCATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAGCCTTTTTAAGTAT-TTAAGTTA-----ATACCTGTTGGAATGCTGTAACGTAATATTCCG---------------------------------------------------------------G-------------------------------------------------------------------TA--------ATA--------TTTCGTCTTTAGGTACCAGAACAAACTTCGTGGCAATGCACCTCTTACCGAGCAGGAGAAGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....TGGATCGTGCTCAAATGAAAATGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................ATTCCG---------------------------------------------------------------G-------------------------------------------------------------------TA--------ATA--------TTTCGTCTTTAG..................................................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTGGATCGTGCTCAAATGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.TGTGTGGATCGTGCTCAAATGAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TACCTGTTGGAATGCTGTAACG................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCACCTCTTACCGAGCA........	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAATGCACCTCTTACCGAGCAGGAGA...	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................AATGAAAATGCCTACAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCAGAACAAACTTCGTGGC............................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......GGATCGTGCTCAAATGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.TGTGTGGATCGTGCTCAAATGAAAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................CCG---------------------------------------------------------------G-------------------------------------------------------------------TA--------ATA--------TTTCGTCTTTA...................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TGTGGATCGTGCTCAAATGAAAATGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................CAAATGAAAATGCCTACAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

ATGTGTGGATCGTGCTCAAATGAAAATGCCTACAAGAGCATCTTCATATGGTGTGTACTA----------AAGTCT--CTAGTTTTAGTCATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAGCCTTTTTAAGTAT-TTAAGTTG-----ATACCTGTTGGAATGCTGTAACGT--------G---------------------------------------------------------------G-------------------------------------------------------------------TA--------ATA--------TTTCGTCTTTAGGTACCAGAACAAACTTCGTGGCAATGCACCTCTTACCGAGCAGGAGAAGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....GTGGATCGTGCTCAAATGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	1	1	1
.........................ATGCCTACAAGAGCATCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
....GTGGATCGTGCTCAAATGAAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCACCTCTTACCGAGCAGGAG....	24	1	1.00	1	0	1	0	0
.........................ATGCCTACAAGAGCATCTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
..GTGTGGATCGTGCTCAAATGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGTGGCAATGCACCTCT.................	20	1	1.00	1	0	0	1	0
........ATCGTGCTCAAATGAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
................................................................................AGTTTTAGTCATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAGCCT...............................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTCTTACCGAGCAGG......	19	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACTTCGTGGCAATGCAC.....................	21	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCACCTCTTACCGAGCAGG......	21	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGAACAAACTTCGTGGCA...........................	21	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTCTTACCGAGCAGGA.....	20	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTCTTACCGAGCAGGAG....	21	1	1.00	1	0	1	0	0
....GTGGATCGTGCTCAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
ATGTGTGGATCGTGCTCAAATGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
...............TCAAATGAAAATGCCTACAAGAGCATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0

droYak3

ATGTGTGGTTCGTGTTCAAACGAAAATGCGTACAAGAGCATCTTTATATGGTGAGTACTG----------AAACAT--CTAAGTCTAGTCA----------CTG----GGACCCCCCAG-----------------------------------------------------------------------------------A-------------------------------------------------------AAGAAAGCCTTCTTACAACCTTTCCAAATAT-GTTAGTTA-----CCTAATTTAAGGATGTTGTAACAC--------G---------------------------------------------------------------G-------------------------------------------------------------------AT--------ATT--------TTTCGCCTCTAGGTACCAGAACAAACTTCGGGGTAATACACCTCTTACCGAGCAGGAGAAGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................AACGAAAATGCGTACAAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
.............................GTACAAGAGCATCTTTATATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
........................................................ACTG----------AAACAT--CTAAGTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.50	4	0	4	0	0	0	0	0	0	0	0	0
...................ACGAAAATGCGTACAAGAGCATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

ATGTGTGGTTCGTGTTCAAACGAAAATGCATATAAGAGCATCTTCATATGGTGAGTGTAT------------------CTAG------C---------T-ACTG----GGAGACCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTAGAATGTAGTACAAT--------G---------------------------------------------------------------G-------------------------------------------------------------------TG--------ATT--------TTTCGCCTATAGGTACCAGAACAAACTTCGTGGCAATACACCTCTTACCGAGCAGGAGAAGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......GGTTCGTGTTCAAACGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	1	0	1	1	0
...............................ATAAGAGCATCTTCATATGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	1	1	0
....GTGGTTCGTGTTCAAACGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACACCTCTTACCGAGCAGGAGAAGA	28	1	1.00	1	0	0	0	0	1	0	0
................CAAACGAAAATGCATATAAGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
................................TAAGAGCATCTTCATATGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...............................ATAAGAGCATCTTCATATGGTACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.......................AAATGCATATAAGAGCATCTTCATATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
...............................ATAAGAGCATCTTCATATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACACCTCTTACCGAGCAGGAGAAG.	28	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTCGTGGCAATACACCT...................	21	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACACCTCTTACCGAGC.........	20	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTCTTACCGAGCAGG......	19	1	1.00	1	0	0	0	1	0	0	0
...............TCAAACGAAAATGCATATAAGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.....................GAAAATGCATATAAGAGCATCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACACCTCTTACCGAGCAGGAGA...	25	1	1.00	1	0	0	0	1	0	0	0
...........................GCATATAAGAGCATCTTCATATGGTACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0

droPer2

ATGTGTGGGTCATGTTCAAACGAAAATGCATATAAAAGCATTTTTATATGGTAAGTTTGTTTAT----------GGTT------CT--------GTT-CTAT--TAT---------------------------------------------------------------------------------------GGGAAATAA-------------------------------------------------------AAGAAAACCTTCT----------------------------------------------------------------------------------GTCCGTTGCTAATGGTAATCATCCTTAAGGCGGGGGACTTGTTATGAGCGATTAA-AA-CCCCTTCAACATATATTT-CTAATTCTTAAAAA-----------------------A--------------------ATTTTTTCCAGGTATCAAAATAAAGTTCGTGGAACGGCAGCCTTTACGGAACAGGAAAAAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTTTACGGAACAGGAAAA..	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGAACGGCAGCCTTTACGGAAA.........	25	1	1.00	1	0	1	0	0	0	0

droWil2

ATGTGCGGGTCATGTTCGAATGAAAATGCCTACAAAAGCATCTTTATTTGGTAGGTCTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACG-----AAATGTAATC---AGAACTTTCCATTTACCGATTTCTAAT----------------------------------------------------------------------------------------------------------------------------GGTCTTTCAGGTATCAAAATAAGATGAGGGGAAATGTTGGCTTCACCGAAAATGAGATGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............GTTCGAATGAAAATGCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	4	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGGAAATGTTGGCTT.................	21	1	2.00	2	0	0	1	1	0
ATGTGCGGGTCATGTTCGAATGAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
ATGTGCGGGTCATGTTCGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAATAAGATGAGGG..............................	18	1	1.00	1	0	0	0	1	0
ATGTGCGGGTCATGTTCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGGAAATGTTGG....................	18	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGATGAGGGGAAATGT.......................	20	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAATAAGATGAGGGGAAAT.........................	23	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTGGCTTCACCGAA..........	18	1	1.00	1	0	0	0	1	0

droVir3

ATGTGTGGATCATGTTCAAACGAAAATGCTTTCAAGAGCATTTTCCTTTGGTATGTAACG------TTTAAAGC------------------------CCAT--TTT---------------------------------------------------------------------------------------GAGAAACATTTTACCATAGATA-------------------------------ATTAT------------------------TCG--------------------------------------------------------------------------------------------------TTTTAATGGAA-----------G-------------------------------------------------------------------TA--------TTG--------TTATTTCTTCAGGTACCAAACTAAAATTCGAGGAGAAAAGGGATTCACTGCAGAAGAGATGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGAGGAGAAAAGGGATT.................	20	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GGATCATGTTCAAACGAAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CAAACGAAAATGCTTTCAAGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GCTTTCAAGAGCATTTTCCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ATCATGTTCAAACGAAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCACTGCAGAAGAGAT..	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..........CATGTTCAAACGAAAATGCTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTGGATCATGTTCAAACGAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGAGGAGAAAAGGG....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CTTTCAAGAGCATTTTCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACGAAAATGCTTTCAAGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AAACGAAAATGCTTTCAAGAGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTGGATCATGTTCAAACGAAAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAACTAAAATTCGAGGAGAA.........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCGAGGAGAAAAGGGA...................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGATTCACTGCAGAAGA.....	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACTAAAATTCGAGGAGAA.........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GATCATGTTCAAACGAAAATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAAATTCGAGGAGAAAAG......................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGAAAATGCTTTCAAGAGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GTGTGGATCATGTTCAAACGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTGCAGAAGAGATG.	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGATTCACTGCAGAAGAG....	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCGAGGAGAAAAGGGATTCACT.............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
ATGTGTGGATCATGTTCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGATTCACTGCAGAAGA.....	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGATTCACTGCAGAAGAGATG.	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................CAAACGAAAATGCTTTCAAGAGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTAAAATTCGAGGAGAAAAGGG....................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCAAACGAAAATGCTTTCAAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GTGTGGATCATGTTCAAACGAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGATTCACTGCAGAAGAGAT..	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........ATGTTCAAACGAAAATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTCACTGCAGAAGAGATGA	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AACGTTAACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----AATTATTTT-------AATAATG-----AAT------G--G------------------------------------------------------------T-------------------------------------------------------------------AA--------ATTTAT-----GGATTTCATCAGGTATCAAAATAAAACTCGAGGAGACGCCGGATTTACTATAGATGAGATCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCGAGGAGACGCCGGAT..................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAAAATAAAACTCGAGGAGACGCC......................	28	1	1.00	1	1	0	0	0	0	0

droGri2

ATGTGTGGCTCATGCTCAAACGAAAATGCTTTTAAGAGCATTTTCATTTGGTATGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_2720

scaffold_13337:19278349-19278523 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads