dan_2712

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CGGGGAACACAGGCAGTGCCGGAGAAACTTTATCAGGGCGTAACCAAATCCGCAAGGGGTCATCGCTTAATCTCGGCTGGGTCTATTTAATAGCCGGCTAGGTTGCCACAGAGGCGCTCAGTCGGTTTCTGCCCTCCAATCGGGATGGCCATGTTGCGGACAAATTTACTAATCCTGGCCATGGCCTGGTTGTTCTTGCAGTGTACCGCCTACGTGGATGGATCCGCCATATCCTATGGCACAGGCAATGA ****************************************************************************************************************.((...((.((((....(((.......)))..))))))...))********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V106 head	V055 head	V105 male body
.........................................................................................................................................................................................................TTTACCGCCTACGTGGATGGATC...........................	23	1	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................TGGCCTGGTTGTTCTTGCAGTGTA..............................................	24	0	1	1.00	1	1	0	0	0	0
..................................................................................................................CGCTCAGTCGGTTTCTGCCC.....................................................................................................................	20	0	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................ATCCTATGGCACAGGCAAT..	19	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................ATCGGGATGGCCATGTTGC..............................................................................................	19	0	1	1.00	1	0	1	0	0	0
..................................................................................................................................GCCCTCCAATCGGGATGGCCATGTTG...............................................................................................	26	0	1	1.00	1	0	0	1	0	0
...........................................................................................................................GGTTTCTGCCCTCCAATCGGGATGGC......................................................................................................	26	0	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................GGATGGATCCGCCATATCCTAC..............	22	1	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................GATGGATCCGCCATATCCTATGGCAC.........	26	0	1	1.00	1	0	1	0	0	0
..................................................................................................................................GCCCTCCAATCGGGATGGCCATGTTGC..............................................................................................	27	0	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................ATATCCTATGGCACAGGCA....	19	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................................AATCGGGATGGCCATGTTGCGGACAA........................................................................................	26	0	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................ATATCCTATGGCACAGGCAATG.	22	0	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................CATGGCCTGGTTGTTCTTGCA...................................................	21	0	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................TACGTGGATGGATCCGCCA......................	19	0	1	1.00	1	0	0	0	1	0
...............................................................................................................AGGCGCTCAGTCGGTTTCTGCCCT....................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
....................GGAGAAACTTTATCAGGGCGT..................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
............................................................................................................................GTTTCTGCCCTCCAATCGGGATGGC......................................................................................................	25	0	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................GTACCGCCTACGTGGATGGAT............................	21	0	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................GTTCTTGCAGTGTACCGCCTACG.....................................	23	0	1	1.00	1	0	0	1	0	0
.................................................................................................................................................TGGCCATGTTGCGGACAAATT.....................................................................................	21	0	1	1.00	1	1	0	0	0	0
................................................................................................................................CTGCCCTCCAATCGGGATGG.......................................................................................................	20	0	1	1.00	1	0	0	1	0	0
...............................ATCAAGGTGTAACCAAACCC........................................................................................................................................................................................................	20	3	8	0.13	1	0	1	0	0	0
.....................................................................................................................................................................................................AAATTGTACCGCCTACGTG...................................	19	3	10	0.10	1	0	1	0	0	0
..................................................................................................................................GCCTTCCAGTCGGGATAGC......................................................................................................	19	3	18	0.06	1	0	0	0	0	1
..........................................................................................................................................ATCGGGATGGCCAAGTGGT..............................................................................................	19	3	20	0.05	1	0	0	0	1	0

GCCCCTTGTGTCCGTCACGGCCTCTTTGAAATAGTCCCGCATTGGTTTAGGCGTTCCCCAGTAGCGAATTAGAGCCGACCCAGATAAATTATCGGCCGATCCAACGGTGTCTCCGCGAGTCAGCCAAAGACGGGAGGTTAGCCCTACCGGTACAACGCCTGTTTAAATGATTAGGACCGGTACCGGACCAACAAGAACGTCACATGGCGGATGCACCTACCTAGGCGGTATAGGATACCGTGTCCGTTACT ********************************************************************************************.((...((.((((....(((.......)))..))))))...))****************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo
..........................................................................................................................................................................................................................CCCTAGGCAGTAAAGGATAC.............	20	3	3	0.33	1	0	1
...............................................................................................................GCCACGAGTCAGCCAAACAC........................................................................................................................	20	3	4	0.25	1	1	0
......................................................................................................................................AGGTTTGCTCTACCGGTA...................................................................................................	18	2	7	0.14	1	1	0
........................................................................AGCCGACCCAGATCCTTTA................................................................................................................................................................	19	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13337:18455038-18455288 +	dan_2712	CG------------------GGGAACACA--GGCAG--------------T--------G----CCGGAGAAA-------------CTTTATCAGGG--CGTAACC------------------AAATCCGCAAGGGGTCATCG--CTTAATCTCGGC-TGG--------------------------------------GTC----TATTTAATAGCCGGCTAGGTTGCCACAGAGGCGCTCAGTCGGTTTCTGCCCTCCAATCG----------GGATGGCCATGTTGCGGACAAATTTACTAA---TCCTGGCCATGGCCT---GGTTGTTCTTGCAGTGTACCGCCTACGTGGATGGATC------------------CGCCATATCCTATG---GCACAGGCAATGA
droBip1	scf7180000396741:1637977-1638224 +		GG------------------GG-CGCAGG------------------------------CAGGGCCGGAGAAA-------------CTTTATCAGGG--CGTAACC------------------AAATCCGCAAGGGGTCATCG--TTTAATCTCGAC-TG--------------------------------------CGTC----TATTTAATAGCTGGCTAGGGTGCCGCATCGGCGCTCAGTCGGTTTCTGCCCTCCAATCG----------GGATGGCCATGTTGCGGACAAATTTACTAA---TCCTGGCCGTGGCCT---GGTTGTTCTTGCAGTGTGCCGCCTACGTGGATGGATC------------------CGCCATATCCTATG---GCACAGGCAATGA
droKik1	scf7180000302251:33570-33871 -		TG------------------GGGTGTGTG-------TGC-------ACTGGCA-------ACGCCTAGAGAAA-------------CTTTATCAGGG--CGAAACCGAATACGAATCCAAATCCGAATCCGCAAGGGGTCAGCGAGATTAGTCGCG--------CAGCAGGG-------------------AAGT-CTACGCGAGTCTATTTATTAACGATCAGCTCCGGCAGCGGGGCTTTCAGTCGGTGTCTGGCCTCCACTGCAGAACCAAG-CCAGGGCCATGTCTCGGAC---TGTACTAATATTCCTGGCTGTTGCCT---TGTTGTCCTTGCAGTGTGCCGCCTTCGCGGATGGAGC------------------CGCCCTCGTCTATG---GAACGGGTAATGA
droFic1	scf7180000453824:348348-348622 -		CA------------------G-------C--GAAATCAG-------ACAGTCGACG--CCCCGCCTAGAGAAA-------------CTTTATCAGGG--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCGCAGCAGGA-------------------AAGC--GTCGCG----TATTTAATACCGGACCTCGTCGCTCGAGCGACTTTCAGTCGGCGGCCGAGCTCCACTCC------AAGCCGATGGCCATGTCGCGGAC---TGTACTAA---TCCTGGCTCTTGCCT------TGTCCTTGCAGTGCGCCGCCTACGTGGACGGAGC------------------CTCGATCACCTATG---GAACCGGAAACGA
droEle1	scf7180000491249:6264758-6265061 -		GGGGGCTGAGGGGGGGTCTGGGTAGCTTA--TAAACCAG-------ACAGTCGACG--CCCCGCCTAGAGAAA-------------CTTTATCAGGG--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCGCGCGCTCGAACAGCCGAACAGCATGAAACGGCATGAAAAGT-AGTAGCG----TATTTAAG------------------CGCGACTTTCAGTCGACGGCCGTTCCCCAACCA------ATTCATACAGCCATGTCTCGGAC---TGTACTAA---TCCTGTTCGTTGCCT------TGTCCTTGCAGTGTGCCGCCCTTGTGGATGGGGG------------------CTCAATCAACTATG---GAACCGGAAACGA
droRho1	scf7180000761233:59650-59932 -		TG------------------GGGAGCAGA--AAAACCAG-------ACAGTCGACG--CCCCGCCTAGAGAAA-------------CTTTATCAGGG--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCGCGC--TCGAACAGCAGAA-------------------AAGT-TGCCATG----TATTTAATAGCGGACTCCACCACTCGAGTGACTTTCAGTCGGCTTTCGTTCTCCATTCC------AAACCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCTGTTGCCT------TGTCCTTGCAGTGTGCCGCCCTAGTGGATGGAGC------------------CTCCATCAACTATG---GAACCGGAAACGA
droBia1	scf7180000302529:508625-508898 +		CG------------------G-------A--GACACCAG-------ACAGTCGACG--CCCCGCCTAGAGAAA-------------CTTTATCAGGG--AGAAACG------------------GAATCCGCAAGGGGTCATC---ACTAATCTCGC--CCGCACAGCAGGA-------------------AAGT-TG-CGAC----TACTTAATAGCGGGCTCCGCCGCTCGATCGACTTTCAGTCGGCGTCGGTTCTCCATTCC------AAGCCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCTGTTGCCT------TGTCCTTGCAGTGTGCCGCCTTCGTGGACGGAGC------------------CTCGATCTCCTATG---GAACCGGAAACGA
droTak1	scf7180000415184:30303-30592 +		TA------------------GGGAGCAGA--GACAGCAGACAGTCGACAGTCGACG--CCCCGCCTAGAGAAA-------------CTTTATCAGGG--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCCCAGCAGGA-------------------AAGT-TGCCGAC----TACTTAATAGCGGGCTTCGCCGCGCGATCGACTTTCAGTCGGCCTCCGATCTCCATTCC------AAGCCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCCGTTGCCT------TGTCCTTGCAGTGTGCCGCCTACGTGGACGGAGC------------------CTCCCTCACCTATG---GAACCGGAAACGA
droEug1	scf7180000409471:496429-496711 +		TA------------------GGGAGCAGA--GACAGCAG-------ACAGTCGACG--CCCCGCCTAGAGAAA-------------CTTTATCAGTG--AGAAATG------------------AAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCACAGCAGGA-------------------AAGT-TGCCGAG----TATTTAATAGCGGACTTCGCCGACCGATCGACTTTCAGTCGGCGTCCGTTCTTCATTCC------AAACCGTTGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCTATTGCCT------TGTCCTTGCAGTGTGCCGCGTACGTGGACGGAGC------------------CTCTCTCACCTATG---GAACCGGAAACGA
dm3	chr3L:18985776-18986058 -		TA------------------GGGAGCAGA--GACAGCAG-------ACAGTCGACG--CCCCGCTTAGAGAAA-------------CTTTATCAGGC--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCTCAGCAGGA-------------------AAGT-TGCCGAG----CATTTAATAGCGGACTCCGCCGCTCGATCGACTTTCAGTCGGCGCGCGATCTCCACTCT------AACCCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCCGTTGCCT------TGTCCTTGCAGTGTGCCGCCTTCGTGGACGGAGC------------------CTCCATCACCTATG---GAACCGGAAACGA
droSim2	3l:18607554-18607843 -	dsi_16104	CGG-----------GGGCTAGGGAGCAGA--GACAGCAG-------ACAGTCGACG--CCCCGCTTAGAGAAA-------------CTTTATCAGGC--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCTCAGCAGGA-------------------AAGT-TGCCGAG----CATTTAATAGCGGACTCCGCCGCTCGATCGACTTTCAGTCGGCGCGCGATCTCCACTCT------AACCCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCCGTTGCCT------TGTCCTTGCAGTGCGCCGCCTTCGTGGACGGAGC------------------CTCCATCACCTATG---GAACCGGAAACGA
droSec2	scaffold_19:950760-951049 -	dse_944	CGG-----------GGGCTAGGGAGCAGA--GACAGCAT-------ACAGTCGACG--CCCCGCTTAGAGAAA-------------CTTTATCAGGC--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCTCAGCAGGA-------------------AAGT-TGCCGAG----CATTTAATAGCGGACTCCGCCGCTCGATCGACTTTCAGTCGGCGCGCGATCTCCACTCT------AACCCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCCGGTGCCT------TGTCCTTGCAGTGCGCCGCCTTCGTGGACGGAGC------------------CTCCATCACCTATG---GAACCGGAAACGC
droYak3	3L:21615351-21615633 +		TA------------------GGGAGCAGA--GACGGCAG-------ACAGTCGACG--CCCCGCTTAGAGAAA-------------CTTTATCAGGC--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCGCAGCAGGA-------------------AAGT-CGCCGTG----CATTTAATAGCGGACTTCGCCGCTCGATCGACTTTCAGTCGGCGCGCGATCGCCACTCT------AAACCGATGGCCATGTGTCGGAC---TGTACTAA---TCCTAGCCGTTGCCT------TGTCCTTGCAGTGCGCCGCCTTCGTGGACGGAGC------------------CTCCATTACCTATG---GAACCGGAAACGA
droEre2	scaffold_4784:18804580-18804862 -		TA------------------GGGAGCAGA--GACAGCAG-------ACCGCCGACG--CCCCGCTTAGAGAAA-------------CTTTATCAGGC--AGAAGCG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCTCAGCAGGA-------------------AAGT-TGCCGTG----CATTTAATAGCAGACATCGCCGCTCGATCGACTTTCAGTCGGCGCGCGATCGCCACTCT------AACCCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCCGTTGCCT------TGTCCTTGCAGTGCGCCGCCTTCGTGGACGGAGC------------------CTCCATCACCTATG---GAACCGGAAACGA
dp5	XR_group8:7061441-7061731 -	dps_3346	CG------------------GC----------------G-------ACACTCGGCG--TTCCGCTTAGTGAAA-------------CTTTATCAGGGCGCGAAACG------------------AAATCCGCAAGGGGTCAACG--TTTAATCTCGGC-----TCCG--AGA-------------------CAGTGTGGGTTG----GGTTTATTAAACGAGACCGCTGGCAGCGGTGCCCTCAGTCGTAGTCTAGTCTCCATTGC------TGAGCGATGGCCCTGTGGCACACCACCGTACTAA---TCCTGGCCTATGCCT---CCATCTCCTTGCAGTGCGCCGCATACGTGGAGGCAGCCACCGTGCCACCGGGCGCCCTCATCAAGTATG---GAACGGCCAATGA
droPer2	scaffold_36:245013-245319 +		CG------------------AGATTTAAATCGAACGGCG-------ACACTCGGCG--TTCCGCTTAGTGAAA-------------CTTTATCAGGGCGCGAAACG------------------AAATCCGCAAGGGGTCAACG--TTTAATCTCGGC-----TCCG--AGA-------------------CAGTGTGGGTTG----GGTTTATTAAACGAGACCGCTGGCAGCGGTGCCCTCAGTCGTAGTCTAGTCTCCATTGC------TGAGCGATGGCCCTGTGGCACACCACCGTACTAA---TCCTGGCCTATGCCT---CCATCTCCTTGCAGTGCGCCGCATACGTGGAGGCCGCCACCGTGCCACCGGGCGCCCTCATCAAGTATG---GAACGGCCAATGA
droWil2	scf2_1100000004762:3329438-3329702 +		AG------------------GGGAGCGGG--GGTAGTGGGGAAGCTACAA-CTACATCTCGTGCCTAAAGACAGGCTAAGCGTCTCTCTTATCAGGG--TGAAATG------------------AAATCCGCAAGGGGTCAATG--TTTAATCTCTATCTAGTCTATCGG-----------------------------GGTA----TATATATTAGATGAGATTTCTTTGGACATTGCATTCAGTTGAAATC--------------------------TGACCATGTCTGGCTC---TATACTAA---TCCTTGGCTTTGCCT------TA---TTACAGTGTGCAGCA---------GCTGC------------------TACCCTCAATTATG---GAACTGGCAATGA
droVir3	scaffold_13049:13442711-13442858 +		CA------------------GTCAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CAGTGTG----GATTTCAT-----------------------------------------------------------AGTTGTCGCCATGCTGGGTTC---CCTATTAA---TCCTTGGCATTGTCGTCCCATCTGTCTTGCAGTGTGCTTCGTATGCGGATGCTGCGGC--TGCTATCG--C--TGCCTCAAACTATG---CTACTGGCAACGA
droMoj3	scaffold_6680:13898947-13899088 -		CA------------------TTCAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGCGCG----CATTTCAT-----------------------------------------------------------AGTTGTCGCCATGCTCGCCAT---TTCACTAA---TCCTTGGCCTTGTCGTCTCATCTGTTTTACAGTGCGCCGATGCTGCA---GCAGCCA--------TCA--C--TGCCAACAACTATGGCGGCACGGGCAACGA
droGri2	scaffold_15110:18880140-18880191 +		T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCAGTGTGCCGCATTTGTGGATGCAGC------------------C------AGTTTTG---GCACTGGCAATGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CG------------------GGGAACACA--GGCAG--------------T--------G----CCGGAGAAA-------------CTTTATCAGGG--CGTAACC------------------AAATCCGCAAGGGGTCATCG--CTTAATCTCGGC-TGG--------------------------------------GTC----TATTTAATAGCCGGCTAGGTTGCCACAGAGGCGCTCAGTCGGTTTCTGCCCTCCAATCG----------GGATGGCCATGTTGCGGACAAATTTACTAA---TCCTGGCCATGGCCT---GGTTGTTCTTGCAGTGTACCGCCTACGTGGATGGATC------------------CGCCATATCCTATG---GCACAGGCAATGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................................................................................................................................................................................................TGGCCT---GGTTGTTCTTGCAGTGTA...................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................CGCTCAGTCGGTTTCTGCCC..........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................ATCCTATG---GCACAGGCAAT..	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................ATCG----------GGATGGCCATGTTGC.........................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................GCCCTCCAATCG----------GGATGGCCATGTTG..........................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................GGTTTCTGCCCTCCAATCG----------GGATGGC.................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................GGATGGATC------------------CGCCATATCCTAC.................	22	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GATGGATC------------------CGCCATATCCTATG---GCAC.........	26	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................GCCCTCCAATCG----------GGATGGCCATGTTGC.........................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................ATATCCTATG---GCACAGGCA....	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AATCG----------GGATGGCCATGTTGCGGACAA...................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ATATCCTATG---GCACAGGCAATG.	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................CATGGCCT---GGTTGTTCTTGCA........................................................................	21	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TACGTGGATGGATC------------------CGCCA.........................	19	1	1.00	1	0	0	0	1	0	0
...........................................................................................................................................................................................................................................AGGCGCTCAGTCGGTTTCTGCCCT.........................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................GGAGAAA-------------CTTTATCAGGG--CGT......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................GTTTCTGCCCTCCAATCG----------GGATGGC.................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTACCGCCTACGTGGATGGAT.................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GTTCTTGCAGTGTACCGCCTACG..........................................................	23	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................TGGCCATGTTGCGGACAAATT................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................CTGCCCTCCAATCG----------GGATGG..................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1

droBip1

GG------------------GG-CGCAGG------------------------------CAGGGCCGGAGAAA-------------CTTTATCAGGG--CGTAACC------------------AAATCCGCAAGGGGTCATCG--TTTAATCTCGAC-TG--------------------------------------CGTC----TATTTAATAGCTGGCTAGGGTGCCGCATCGGCGCTCAGTCGGTTTCTGCCCTCCAATCG----------GGATGGCCATGTTGCGGACAAATTTACTAA---TCCTGGCCGTGGCCT---GGTTGTTCTTGCAGTGTGCCGCCTACGTGGATGGATC------------------CGCCATATCCTATG---GCACAGGCAATGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TG------------------GGGTGTGTG-------TGC-------ACTGGCA-------ACGCCTAGAGAAA-------------CTTTATCAGGG--CGAAACCGAATACGAATCCAAATCCGAATCCGCAAGGGGTCAGCGAGATTAGTCGCG--------CAGCAGGG-------------------AAGT-CTACGCGAGTCTATTTATTAACGATCAGCTCCGGCAGCGGGGCTTTCAGTCGGTGTCTGGCCTCCACTGCAGAACCAAG-CCAGGGCCATGTCTCGGAC---TGTACTAATATTCCTGGCTGTTGCCT---TGTTGTCCTTGCAGTGTGCCGCCTTCGCGGATGGAGC------------------CGCCCTCGTCTATG---GAACGGGTAATGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CA------------------G-------C--GAAATCAG-------ACAGTCGACG--CCCCGCCTAGAGAAA-------------CTTTATCAGGG--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCGCAGCAGGA-------------------AAGC--GTCGCG----TATTTAATACCGGACCTCGTCGCTCGAGCGACTTTCAGTCGGCGGCCGAGCTCCACTCC------AAGCCGATGGCCATGTCGCGGAC---TGTACTAA---TCCTGGCTCTTGCCT------TGTCCTTGCAGTGCGCCGCCTACGTGGACGGAGC------------------CTCGATCACCTATG---GAACCGGAAACGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGGGGCTGAGGGGGGGTCTGGGTAGCTTA--TAAACCAG-------ACAGTCGACG--CCCCGCCTAGAGAAA-------------CTTTATCAGGG--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCGCGCGCTCGAACAGCCGAACAGCATGAAACGGCATGAAAAGT-AGTAGCG----TATTTAAG------------------CGCGACTTTCAGTCGACGGCCGTTCCCCAACCA------ATTCATACAGCCATGTCTCGGAC---TGTACTAA---TCCTGTTCGTTGCCT------TGTCCTTGCAGTGTGCCGCCCTTGTGGATGGGGG------------------CTCAATCAACTATG---GAACCGGAAACGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TG------------------GGGAGCAGA--AAAACCAG-------ACAGTCGACG--CCCCGCCTAGAGAAA-------------CTTTATCAGGG--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCGCGC--TCGAACAGCAGAA-------------------AAGT-TGCCATG----TATTTAATAGCGGACTCCACCACTCGAGTGACTTTCAGTCGGCTTTCGTTCTCCATTCC------AAACCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCTGTTGCCT------TGTCCTTGCAGTGTGCCGCCCTAGTGGATGGAGC------------------CTCCATCAACTATG---GAACCGGAAACGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CG------------------G-------A--GACACCAG-------ACAGTCGACG--CCCCGCCTAGAGAAA-------------CTTTATCAGGG--AGAAACG------------------GAATCCGCAAGGGGTCATC---ACTAATCTCGC--CCGCACAGCAGGA-------------------AAGT-TG-CGAC----TACTTAATAGCGGGCTCCGCCGCTCGATCGACTTTCAGTCGGCGTCGGTTCTCCATTCC------AAGCCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCTGTTGCCT------TGTCCTTGCAGTGTGCCGCCTTCGTGGACGGAGC------------------CTCGATCTCCTATG---GAACCGGAAACGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TA------------------GGGAGCAGA--GACAGCAGACAGTCGACAGTCGACG--CCCCGCCTAGAGAAA-------------CTTTATCAGGG--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCCCAGCAGGA-------------------AAGT-TGCCGAC----TACTTAATAGCGGGCTTCGCCGCGCGATCGACTTTCAGTCGGCCTCCGATCTCCATTCC------AAGCCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCCGTTGCCT------TGTCCTTGCAGTGTGCCGCCTACGTGGACGGAGC------------------CTCCCTCACCTATG---GAACCGGAAACGA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TA------------------GGGAGCAGA--GACAGCAG-------ACAGTCGACG--CCCCGCCTAGAGAAA-------------CTTTATCAGTG--AGAAATG------------------AAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCACAGCAGGA-------------------AAGT-TGCCGAG----TATTTAATAGCGGACTTCGCCGACCGATCGACTTTCAGTCGGCGTCCGTTCTTCATTCC------AAACCGTTGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCTATTGCCT------TGTCCTTGCAGTGTGCCGCGTACGTGGACGGAGC------------------CTCTCTCACCTATG---GAACCGGAAACGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TA------------------GGGAGCAGA--GACAGCAG-------ACAGTCGACG--CCCCGCTTAGAGAAA-------------CTTTATCAGGC--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCTCAGCAGGA-------------------AAGT-TGCCGAG----CATTTAATAGCGGACTCCGCCGCTCGATCGACTTTCAGTCGGCGCGCGATCTCCACTCT------AACCCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCCGTTGCCT------TGTCCTTGCAGTGTGCCGCCTTCGTGGACGGAGC------------------CTCCATCACCTATG---GAACCGGAAACGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................AAACG------------------GAATCCGCAAGGGGT.................................................................................................................................................................................................................................................................................	20	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TTCGTGGACGGAGC------------------CTCCATCACC....................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GACTTTCAGTCGGCGCGCG.............................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CCTTCGTGGACGGAGC------------------CTCCATC.......................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ATCACCTATG---GAACCGGAAA...	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GCCGCCTTCGTGGACGGAGC------------------CTCC..........................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TGGCCATGTCTCGGAC---TG................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................CGATGGCCATGTCTCGGAC---TGT...............................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................................................................................................................................................TCCATCACCTATG---GAACCGGAAACGA	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GAGCAGA--GACAGCAG-------ACAGTCC.......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CCGCCTTCGTGGACGGAGC------------------CTCCATC.......................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AGTGTGCCGCCTTCGTGGACGGAGC------------------..............................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CATCACCTATG---GAACCGGAAACGA	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................CGTGGACGGAGC------------------CTCCATCAC.....................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................CAGTCGGCGCGCGATCTCCA......................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TACTAA---TCCTGGCCGTTGCC.........................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................AAA-------------CTTTATCAGGC--AGAACTC------------------................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CGG-----------GGGCTAGGGAGCAGA--GACAGCAG-------ACAGTCGACG--CCCCGCTTAGAGAAA-------------CTTTATCAGGC--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCTCAGCAGGA-------------------AAGT-TGCCGAG----CATTTAATAGCGGACTCCGCCGCTCGATCGACTTTCAGTCGGCGCGCGATCTCCACTCT------AACCCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCCGTTGCCT------TGTCCTTGCAGTGCGCCGCCTTCGTGGACGGAGC------------------CTCCATCACCTATG---GAACCGGAAACGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................TGGCCATGTCTCGGAC---TG................................................................................................................	18	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CCCGATGGCCATGTCTCGGAC---TG................................................................................................................	23	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ACCCGATGGCCATGTCTCGGAC---TG................................................................................................................	24	1	4.00	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................AACCCGATGGCCATGTCTCGGAC---TG................................................................................................................	25	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TCTCGGAC---TGTACTAA---TCCTGGCC...............................................................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GCGCGATCTCCACTCT------AACCC.......................................................................................................................................	21	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CT------AACCCGATGGCCATGTCTCGGAC---TG................................................................................................................	27	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TTCGTGGACGGAGC------------------CTCCATC.......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................G----CATTTAATAGCGGACTCCG..........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ACCCGATGGCCATGTCTCGGAC---TGTA..............................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CGGAC---TGTACTAA---TCCTGGCC...............................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CTCCATCACCTATG---GAACCGGAAAC..	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................ATGTCTCGGAC---TGTACTAA---TCCT...................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GCCGTTGCCT------TGTCCTTGCAG.......................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GATGGCCATGTCTCGGAC---T.................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TGTCTCGGAC---TGTACTAA---TCCTGGC................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TCGGAC---TGTACTAA---TCCTGGCC...............................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CACTCT------AACCCGATGGCCA...............................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................CGTGGACGGAGC------------------CTCCATC.......................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................T------AACCCGATGGCCATGTCTCGGAC---TG................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GACTTTCAGTCGGCGCGCGATCTCCACT....................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................ATCG--ACTAATCTCGC--TGGCTC.......................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TGTCTCGGAC---TGTACTAA---TCCTGGCCG..............................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GTCGGCGCGCGATCTCCACTCT------AACC........................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CCGCCTTCGTGGACG....................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................CGATGGCCATGTCTCGGAC---TGTACG............................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ATCACCTATG---GAACCGGAAAC..	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TGTCTCGGAC---TGTACTAA---TCCTGGCC...............................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TCGGAC---TGTACTAA---TCCT...................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CTCCATCACCTATG---GAACCGGAAA...	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................T------AACCCGATGGCCATGTCTCGGAC---TGTA..............................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CCCGATGGCCATGTCTCGGAC---..................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GCAGTGCGCCGCCTTCGTG........................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CGCGCGATCTCCACTCT------AACCC.......................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GATCGACTTTCAGTCGGCG.................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSec2

CGG-----------GGGCTAGGGAGCAGA--GACAGCAT-------ACAGTCGACG--CCCCGCTTAGAGAAA-------------CTTTATCAGGC--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCTCAGCAGGA-------------------AAGT-TGCCGAG----CATTTAATAGCGGACTCCGCCGCTCGATCGACTTTCAGTCGGCGCGCGATCTCCACTCT------AACCCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCCGGTGCCT------TGTCCTTGCAGTGCGCCGCCTTCGTGGACGGAGC------------------CTCCATCACCTATG---GAACCGGAAACGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................................................................................................................................................................................................................GCCTTCGTGGACGGAGC------------------CTCC..........................	21	1	2.00	2	0	1	0	1
................................................................................................................................................................................................................................................................................................................................................................................................CCATCACCTATG---GAACCGGA.....	20	1	2.00	2	2	0	0	0
.......................................................................................................................................................................................................................................................................................TGGCCATGTCTCGGAC---TG................................................................................................................	18	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................................................TCCACTCT------AACCCGATGGCCA...............................................................................................................................	21	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................CGCGATCTCCACTCT------AACCCGATGG..................................................................................................................................	25	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TCGTGGACGGAGC------------------CTCCATCACC....................	23	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................CGCTCGATCGACTTTCAGTCGGCGCG...............................................................................................................................................................	26	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGCGCCGCCTTCGTGGACGGAGC------------------..............................	23	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................GCCT------TGTCCTTGCAGTGCGCCGCC..............................................................	24	1	1.00	1	0	0	0	1
............................................................................................................................................................................................................................................................................................ATGTCTCGGAC---TGTACTAA---TCC....................................................................................................	22	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................GGCCATGTCTCGGAC---TGTA..............................................................................................................	19	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................TGGCCATGTCTCGGAC---TGTA..............................................................................................................	20	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................TGGCCATGTCTCGGAC---TGT...............................................................................................................	19	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................ATCACCTATG---GAACCGGAAA...	20	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................CAGTGCGCCGCCTTCGTGG.......................................................	19	1	1.00	1	0	0	0	1
.........................................................................................................................................................................................................................................................................................GCCATGTCTCGGAC---TGTA..............................................................................................................	18	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................GCCTTCGTGGACGGAGC------------------CTC...........................	20	1	1.00	1	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................CCTATG---GAACCGGAAACG.	18	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................GCCTTCGTGGACGGAGC------------------CT............................	19	1	1.00	1	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................CATCACCTATG---GAACCGGAAAC..	22	1	1.00	1	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................CATCACCTATG---GAACCGGAAACGC	24	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................TGCGCCGCCTTCGTGGACG....................................................	19	1	1.00	1	0	0	0	1
................................................AGTCGACG--CCCCGCTTAGAGA.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................AACCCGATGGCCATGTCTCGGAC---TGT...............................................................................................................	26	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................CTCCATCACCTATG---GAACCGGAAACGC	27	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGCGCCGCCTTCGTGGACGGA..................................................	21	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................AGTGCGCCGCCTTCGTGGACGGAGC------------------C.............................	26	1	1.00	1	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................CT------TGTCCTTGCAGTGCGCCG................................................................	20	1	1.00	1	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................TCGTGGACGGAGC------------------CTCCATCACCTATG---G............	28	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................CAGTGCGCCGCCTTCGTG........................................................	18	1	1.00	1	0	0	0	1
.....................................................................................................................................................................................................................................................................................GATGGCCATGTCTCGGAC---TGTACTA...........................................................................................................	25	1	1.00	1	0	1	0	0

droYak3

TA------------------GGGAGCAGA--GACGGCAG-------ACAGTCGACG--CCCCGCTTAGAGAAA-------------CTTTATCAGGC--AGAAACG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCGCAGCAGGA-------------------AAGT-CGCCGTG----CATTTAATAGCGGACTTCGCCGCTCGATCGACTTTCAGTCGGCGCGCGATCGCCACTCT------AAACCGATGGCCATGTGTCGGAC---TGTACTAA---TCCTAGCCGTTGCCT------TGTCCTTGCAGTGCGCCGCCTTCGTGGACGGAGC------------------CTCCATTACCTATG---GAACCGGAAACGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................................................................................................AGTGCGCCGCCTTCGTGGACGGAGC------------------C.............................	26	1	4.00	4	0	0	0	0	0	0	1	0	0	0	3
..............................................................................................................................................................................................................................................................................................................................................................TTCGTGGACGGAGC------------------CTCCATTACCT...................	25	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TCT------AAACCGATGGCCATGTGTCGGA......................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................GCCATGTGTCGGAC---TGTACTAA---TCCTA..................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CTTCGTGGACGGAGC------------------CTCCATTACCTATG---.............	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGCGCCGCCTTCGTGGAC.....................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TCGTGGACGGAGC------------------CTCCATTACCT...................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................TTCAGTCGGCGCGCGATCGCCA......................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................ACCGATGGCCATGTGTCGGAC---T.................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TTCAGTCGGCGCGCGATCGC........................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................ATCG--ACTAATCTCGC--TGGCGC.......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TTCGTGGACGGAGC------------------CTCCATTACCTATG---.............	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TGGCCATGTGTCGGAC---TG................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GCCT------TGTCCTTGCAGTGCGCCGC...............................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CTCCATTACCTATG---GAACCGGAAA...	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................GTGCGCCGCCTTCGTGGACGGAGC------------------CT............................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CCTTCGTGGACGGAGC------------------CTCCATTACC....................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................GAGAAA-------------CTTTATCAGGC--AGAAACG------------------GA..............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................CTCGC--TGGCGCAGCAGGA-------------------AAGT-CGCCGTG----C............................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................TACTAA---TCCTAGCCGTTGCCT------..................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GCCGCCTTCGTGGACGGAGC------------------CTCC..........................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

TA------------------GGGAGCAGA--GACAGCAG-------ACCGCCGACG--CCCCGCTTAGAGAAA-------------CTTTATCAGGC--AGAAGCG------------------GAATCCGCAAGGGGTCATCG--ACTAATCTCGC--TGGCTCAGCAGGA-------------------AAGT-TGCCGTG----CATTTAATAGCAGACATCGCCGCTCGATCGACTTTCAGTCGGCGCGCGATCGCCACTCT------AACCCGATGGCCATGTCTCGGAC---TGTACTAA---TCCTGGCCGTTGCCT------TGTCCTTGCAGTGCGCCGCCTTCGTGGACGGAGC------------------CTCCATCACCTATG---GAACCGGAAACGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................TCGTGGACGGAGC------------------CTCCA.........................	18	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GCGCCGCCTTCGTGGACGGA..................................................	20	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GCCTTCGTGGACGGAGC------------------CTCCATCACCT...................	28	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................GCGCGATCGCCACTCT------AACC........................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................GCGCCGCCTTCGTGGACGGAGC------------------CTCC..........................	26	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGCGCCGCCTTCGTGGAC.....................................................	18	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................CCGCCTTCGTGGACGGAGC------------------CTCC..........................	23	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................CGCCTTCGTGGACGGAGC------------------CTCA..........................	22	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................AA---TCCTGGCCGTTGCCT------TGTC..............................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................CCTTGCAGTGCGCCGCCTTCGTGGA......................................................	25	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................ATCACCTATG---GAACCGGAAACG.	22	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ATCACCTATG---GAACCGGAAA...	20	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................CGGAGC------------------CTCCATCACCTATG---GAACC........	25	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................AACCCGATGGCCATGTCTCG........................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................TGTCTCGGAC---TGTACTAA---TCCTGGCC...............................................................................................	26	1	1.00	1	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CGCCTTCGTGGACGGAGC------------------CTCCATCA......................	26	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................TGCCT------TGTCCTTGCAGTGCGCCGC...............................................................	24	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AA---TCCTGGCCGTTGCCT------TGTCC.............................................................................	22	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TCGCCACTCT------AACCCGATGGCCATGTCTC.........................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................GAAGCG------------------GAATCCGCAAGGGGTC................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................CT------TGTCCTTGCAGTGCGCC.................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................GATGGCCATGTCTCGGAC---TGTACT............................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................GTGCGCCGCCTTCGTGGACGGA..................................................	22	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................CTTCGTGGACGGAGC------------------CTCCATCACCT...................	26	1	1.00	1	0	0	0	0	1	0	0

dp5

CG------------------GC----------------G-------ACACTCGGCG--TTCCGCTTAGTGAAA-------------CTTTATCAGGGCGCGAAACG------------------AAATCCGCAAGGGGTCAACG--TTTAATCTCGGC-----TCCG--AGA-------------------CAGTGTGGGTTG----GGTTTATTAAACGAGACCGCTGGCAGCGGTGCCCTCAGTCGTAGTCTAGTCTCCATTGC------TGAGCGATGGCCCTGTGGCACACCACCGTACTAA---TCCTGGCCTATGCCT---CCATCTCCTTGCAGTGCGCCGCATACGTGGAGGCAGCCACCGTGCCACCGGGCGCCCTCATCAAGTATG---GAACGGCCAATGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................T---CCATCTCCTTGCAGTGCGCC.................................................................	21	1	3.00	3	0	2	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................AAGTATG---GAACGGCCAATG.	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................TGTGGCACACCACCGTACTAA---.......................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GC------TGAGCGATGGCCCTGTGGC.........................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTGGAGGCAGCCACCGTGCCACCGGGC................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ATCTCCTTGCAGTGCGCCGC...............................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................TGAGCGATGGCCCTGTGGC.........................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................CTGTGGCACACCACCGTA..............................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CCTGGCCTATGCCT---CCATCC...............................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TGGCCTATGCCT---CCATCTCCT............................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................A---TCCTGGCCTATGCCT---CCAT.................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGCGCCGCATACGTGGAGGCAG.................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGCGATGGCCCTGTGGCACACCACC.................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CATCTCCTTGCAGTGCGCCGC...............................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................CCACCGTACTAA---TCCTGGCCT..............................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GCGCCGCATACGTGGAGGCAG.................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TAGTCTAGTCTCCATTGC------TGAG........................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GC------TGAGCGATGGCCCTGTGG..........................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CTGGCCTATGCCT---CCATCTCCTTG..........................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGCGCCGCATACGTGGAGGCAGC................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GCAGCCACCGTGCCACCGGGC................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTATG---GAACGGCCAATGA	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................CCTGGCCTATGCCT---CCATCTCCC............................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................AGCGATGGCCCTGTGGCACACCACC.................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CG------------------AGATTTAAATCGAACGGCG-------ACACTCGGCG--TTCCGCTTAGTGAAA-------------CTTTATCAGGGCGCGAAACG------------------AAATCCGCAAGGGGTCAACG--TTTAATCTCGGC-----TCCG--AGA-------------------CAGTGTGGGTTG----GGTTTATTAAACGAGACCGCTGGCAGCGGTGCCCTCAGTCGTAGTCTAGTCTCCATTGC------TGAGCGATGGCCCTGTGGCACACCACCGTACTAA---TCCTGGCCTATGCCT---CCATCTCCTTGCAGTGCGCCGCATACGTGGAGGCCGCCACCGTGCCACCGGGCGCCCTCATCAAGTATG---GAACGGCCAATGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................................................................CTCAGTCGTAGTCTAGTCT.........................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................GTGCGCCGCATACGTGGAG.....................................................	19	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................CAACG--TTTAATCTCGGC-----TC.......................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................GC------TGAGCGATGGCCCTGTGGCACAC.....................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................ATGCCT---CCATCTCCTTGCAGTGCGCC.................................................................	26	1	1.00	1	0	0	0	0	1	0

droWil2

AG------------------GGGAGCGGG--GGTAGTGGGGAAGCTACAA-CTACATCTCGTGCCTAAAGACAGGCTAAGCGTCTCTCTTATCAGGG--TGAAATG------------------AAATCCGCAAGGGGTCAATG--TTTAATCTCTATCTAGTCTATCGG-----------------------------GGTA----TATATATTAGATGAGATTTCTTTGGACATTGCATTCAGTTGAAATC--------------------------TGACCATGTCTGGCTC---TATACTAA---TCCTTGGCTTTGCCT------TA---TTACAGTGTGCAGCA---------GCTGC------------------TACCCTCAATTATG---GAACTGGCAATGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................................................................................................................................................................................................................CTCAATTATG---GAACTGGCAAT..	21	1	2.00	2	0	0	0	2	0
.............................................................................................................................................................................................................................................................................................................................................................A---------GCTGC------------------TACCCTCAATTATG---GAACT........	25	1	2.00	2	0	0	0	2	0
.G------------------GGGAGCGGG--GGTAGTGGGGAAGC...............................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	2	0
.....................................................ACATCTCGTGCCTAAAGACAGGCTAAG............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................ACCCTCAATTATG---GAACTGGC.....	21	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................TTCTTTGGACATTGCATTCAGTTGAAA.................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................TCAATTATG---GAACTGGCA....	18	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................TGAAATC--------------------------TGACCATGTCTGGC.......................................................................................................................	21	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................A---------GCTGC------------------TACCCTCAATTATG---GAACTGG......	27	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................AGTGTGCAGCA---------GCTGC------------------TACC..........................	20	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................CCTCAATTATG---GAACTGGCA....	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................GC------------------TACCCTCAATTATG---GAACTGGCA....	25	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................CTCAATTATG---GAACTGGC.....	18	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TACCCTCAATTATG---GAACTGGCAAT..	25	1	1.00	1	0	0	1	0	0
..............................................................GCCTAAAGACAGGCTAAGCGTCTCTCTT..................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................TCTGGCTC---TATACTAA---TCCTTGGCTC.............................................................................................	26	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TACAGTGTGCAGCA---------GCTG.................................................	18	1	1.00	1	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................CTCAATTATG---GAACTGGCA....	19	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................TGCCT------TA---TTACAGTGTGCAGCA---------GCT..................................................	25	1	1.00	1	0	0	0	0	1
..................................................................AAAGACAGGCTAAGCGTCTCTC....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................AATTATG---GAACTGGCAAT..	18	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................ATC--------------------------TGACCATGTCTGGCTC---TATACT............................................................................................................	25	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................AATTATG---GAACTGGCAATGA	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................CCCTCAATTATG---GAACTGGC.....	20	1	1.00	1	0	0	0	1	0
.......................................................ATCTCGTGCCTAAAGACAGG.................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0

droVir3

CA------------------GTCAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CAGTGTG----GATTTCAT-----------------------------------------------------------AGTTGTCGCCATGCTGGGTTC---CCTATTAA---TCCTTGGCATTGTCGTCCCATCTGTCTTGCAGTGTGCTTCGTATGCGGATGCTGCGGC--TGCTATCG--C--TGCCTCAAACTATG---CTACTGGCAACGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................GCTTCGTATGCGGATGCTGC................................................	20	1	6.00	6	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TTCGTATGCGGATGCTGCGGC--...........................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GCCTCAAACTATG---CTACTGGC.....	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GCTTCGTATGCGGATGCTGCGG..............................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................CTATCG--C--TGCCTCAAACTATG---CTACT........	26	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CAAACTATG---CTACTGGCAACGA	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GCCTCAAACTATG---CTACTGGCAAC..	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TTCGTATGCGGATGCTGCGGC--TG.........................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................AACTATG---CTACTGGCAACG.	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CTCAAACTATG---CTACTGGCAAC..	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GTATGCGGATGCTGCGGC--TG.........................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................G--C--TGCCTCAAACTATG---CTACTG.......	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TCAAACTATG---CTACTGGCAAC..	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CAAACTATG---CTACTGGCAACG.	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CCTTGGCATTGTCGTCCCATCTGTCTT...........................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................GGATGCTGCGGC--TGCTATCG--C--TGC...........................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AT-----------------------------------------------------------AGTTGTCGCCATGCTGGGTTC---C.................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................GCCATGCTGGGTTC---CCTA..............................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TGCTATCG--C--TGCCTCAAACTATG---CTACT........	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................GGATGCTGCGGC--TGCTATCG--C--T.............................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GCTGCGGC--TGCTATCG--C--TGCCT.........................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................GTGTGCTTCGTATGCGGATGCTGC................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................CTTGGCATTGTCGTCCCATCT................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TGCAGTGTGCTTCGTATGCGGATGCT..................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................GTTGTCGCCATGCTGGGTTC---CCTATTAA---TCCTTGGCA..............................................................................................	37	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................CGTCCCATCTGTCTTGCA........................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTGCTTCGTATGCGGATGCTGC................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TCAT-----------------------------------------------------------AGTTGTCGCCATGCTGGGTTC---CC................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GCTTCGTATGCGGATGCTGCG...............................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TATCG--C--TGCCTCAAACTATG---C............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................C--TGCTATCG--C--TGCCTCAAACTAT.................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CA------------------TTCAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGCGCG----CATTTCAT-----------------------------------------------------------AGTTGTCGCCATGCTCGCCAT---TTCACTAA---TCCTTGGCCTTGTCGTCTCATCTGTTTTACAGTGCGCCGATGCTGCA---GCAGCCA--------TCA--C--TGCCAACAACTATGGCGGCACGGGCAACGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................TTTCAT-----------------------------------------------------------AGTTGTCGCCATGCTCGC........................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CAACAACTATGGCGGCACGGGC.....	22	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CCGATGCTGCA---GCAGCCA--------TCA--C--TGCCA.........................	27	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................C--TGCCAACAACTATGGCGGCACGG.......	24	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................AACTATGGCGGCACGGGC.....	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................TTCAT-----------------------------------------------------------AGTTGTCGCCATGCTCGC........................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GCCGATGCTGCA---GCAGCCA--------TC....................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GCCAACAACTATGGCGGCACGGGC.....	24	1	1.00	1	1	0	0	0	0	0
.........................TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGCGCG----CATTTCAT-----------------------------------------------------------AG........................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................AA---TCCTTGGCCTTGTCGTCTCATCTG...............................................................................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................ACTATGGCGGCACGGGCA....	18	1	1.00	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AGCCA--------TCA--C--TGCCAACAACTATGGC..............	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TGCCAACAACTATGGCGGCACGGGC.....	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................AACAACTATGGCGGCACGGGCA....	22	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................CGCCGATGCTGCA---GCAGCCA--------TC....................................	22	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CCAACAACTATGGCGGCAC.........	19	1	1.00	1	1	0	0	0	0	0

droGri2

T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCAGTGTGCCGCATTTGTGGATGCAGC------------------C------AGTTTTG---GCACTGGCAATGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_2712

scaffold_13337:18455088-18455238 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-7.9	-7.2	-7.1