ID:

dan_2704

 Coordinate:

scaffold_13337:17368469-17368619 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.3 -24.2 -24.2

Flybase annnotation

CDS [Dana\GF23701-cds]; exon [dana_GLEANR_8481:1]; intron [Dana\GF23701-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGTAGCAGCGACGTCTATCCCGTGGGTCCATTCCTGGGCGGAGTGGTGCTGTAAGTACATATGCTCCACTGCGCACGGGGAACAAAAACGAATAAAAAACTATGTGGTGGAAAAACAAAAGCGCCTGCATCTGTGTGGGAATTGATTAAATTTTTGAACTGTCGCCATGACACTACAGAATCGGCTCGCCCCAAGGACGTTCCTAAATCGGTTTCTGCTTCGATTCAATAAGATAACAATGCCAGAAGTTA
**************************************************.....((((.(((((((((((((...((.....................)).)))))))))...............)))).))))((((...(((......(((((...((((.....))))...))))).....))).))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 M044
female body
 M058
embryo
 V055
head
 V105
male body		 V039
embryo
...............................................................CTCCACTGCGCACGGGGAACA....................................................................................................................................................................... 21 0 1 9.00 9 2 2 0 3 2 0
.............................ATTCCTGGGCGGAGTGGTGCT......................................................................................................................................................................................................... 21 0 1 6.00 6 4 1 0 0 1 0
...............................................................CTCCACTGCGCACGGGGAAC........................................................................................................................................................................ 20 0 1 6.00 6 3 1 0 2 0 0
................................................................TCCACTGCGCACGGGGAACA....................................................................................................................................................................... 20 0 1 4.00 4 0 1 0 1 2 0
...............................................................CTCCACTGCGCACGGGGAA......................................................................................................................................................................... 19 0 1 3.00 3 1 0 0 2 0 0
...AGCAGCGACGTCTATCCCGTGGGTC............................................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 1 0 0 1
...............................................................CTCCACTGCGCACGGGGAACAA...................................................................................................................................................................... 22 0 1 2.00 2 0 0 0 2 0 0
.............................ATTCCTGGGCGGAGTGGTGCTT........................................................................................................................................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
.........GACGTCTATCCCGTGGGTC............................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
.............................ATTCCTGGGCGGAGTGGTGCTTT....................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.....................GTGGGTCCATTCCTGGGCGGA................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
...........CTTTTATCCCGTGGGTCCATTCCTGGGC.................................................................................................................................................................................................................... 28 2 1 1.00 1 0 0 1 0 0 0
.GTAGCAGCGACGTCTATCCCGTGGGTC............................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.GTAGCAGCGACGTCTATCCCGTGG.................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
......AGCGACGTCTATCCCGTGGGTCC.............................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................TGACACTACAGAGTCGGCTCG............................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...ATCAGCGACGTCTATCCCGTGG.................................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
...AGCAGCGACATCTATCCCGTGG.................................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
..........................................................ATATGCTCCACTGCGCACG.............................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
............................CATTCCTGGGCGGAGTGGTGCTC........................................................................................................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 1
.............................ATTCCTGGTCGGAGTGGTGCT......................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
................................................................TCCACTGCGCACGGGGAACAA...................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
.............................ATTCCTGGGCGGAGTGGTGCTG........................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0
................................CCTGGGCGGAGTGGTGCTG........................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0
.......................GGGTCCATTCCTGGGCGGAGTGGTGCT......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.............................ATTCCTGGGCGGAGTGGTG........................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
...............................................................CTCCACTGCGCACTGGGAACA....................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................ATTCCTGGGCGGAGTGGTGCTGT....................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
GGTAGCAGCGACGTCTATCCCGTGGGTC............................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
...............................................................CTCCACTGCGCACGTGGAACA....................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................ATTCCTGGGCGGAGTGGTGC.......................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
.....................GTGGGTCCATTCCTGGGCGGAGTGTTGCT......................................................................................................................................................................................................... 29 1 1 1.00 1 0 0 1 0 0 0
.......GCGACGTCTATCCCGTGGG................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0
................................................................TCCACTGCGCTCGGGGAACAAA..................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0
...............................................................CTCCACTGCGCACGGGGAACT....................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...AGCAGCGACGTCTATCCCGT.................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1
..............................................................CCCCCACTGCGCACGGGGAACA....................................................................................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...AGCAGCGACGTCTATCCCGTGC.................................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
......................TGGGTCCATTCCTGGGCGGAGTGGT............................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0
............................CATTCCTGGGCGGAGTGGTG........................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
............................CATTCCTGGGCGGAGTGGTGCTGACC..................................................................................................................................................................................................... 26 3 1 1.00 1 0 0 1 0 0 0
...AGCAGCGACGTCTATCCCGTG................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
...............................................................CTCAACTTCGCACGGGGAACA....................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0
........................GGTTCATTCCCGGGCGGAG................................................................................................................................................................................................................ 19 2 4 0.75 3 0 3 0 0 0 0
.........................GTTCATTCCCGGGCGGAG................................................................................................................................................................................................................ 18 2 6 0.50 3 0 3 0 0 0 0
..............................TTCCTGGGCGGAGTGGTGCTGACC..................................................................................................................................................................................................... 24 3 2 0.50 1 1 0 0 0 0 0
................................CCTGGGCGGAGTGGTGCTGACC..................................................................................................................................................................................................... 22 3 4 0.25 1 0 0 1 0 0 0
.............................................................................................................GAAAAACGAAAACGCCTGCACC........................................................................................................................ 22 3 6 0.17 1 0 0 1 0 0 0
..................................................GTAAGTGCATATGCTCCTCC..................................................................................................................................................................................... 20 3 9 0.11 1 0 0 1 0 0 0
........................GGTCGATTTCTGGGCAGAGT............................................................................................................................................................................................................... 20 3 14 0.07 1 1 0 0 0 0 0
....................................................................................................TATGTGCTGGAAAAAAAAAA................................................................................................................................... 20 2 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................GTTCGGCTCGCCCCCAGGA...................................................... 19 3 20 0.05 1 0 1 0 0 0 0
......................................................................GCGCACGGGGGACAGAGAC.................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0
.................................CTGGGCAGAGTGGTGCGG........................................................................................................................................................................................................ 18 2 20 0.05 1 0 1 0 0 0 0
....................................................................................................TAAGTGGTGGAAAAACAAGG................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CCATCGTCGCTGCAGATAGGGCACCCAGGTAAGGACCCGCCTCACCACGACATTCATGTATACGAGGTGACGCGTGCCCCTTGTTTTTGCTTATTTTTTGATACACCACCTTTTTGTTTTCGCGGACGTAGACACACCCTTAACTAATTTAAAAACTTGACAGCGGTACTGTGATGTCTTAGCCGAGCGGGGTTCCTGCAAGGATTTAGCCAAAGACGAAGCTAAGTTATTCTATTGTTACGGTCTTCAAT
**************************************************.....((((.(((((((((((((...((.....................)).)))))))))...............)))).))))((((...(((......(((((...((((.....))))...))))).....))).))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V055
head
 V039
embryo
...............................................................................................................................................................................GTCTTAGCCGAGCGGGGTTC........................................................ 20 0 1 1.00 1 1 0 0
..ATCGTCGCTGCAGATAGGGCA.................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0
................................................................................................................................................................................TCTTAGCGGAGGGGGGT.......................................................... 17 2 9 0.11 1 0 1 0
....CGTCCCGGCTGATAGGGCA.................................................................................................................................................................................................................................... 19 3 10 0.10 1 0 1 0
...................................................................................................................................................................................................................................TATTTTAGTGTTACGGTATTC... 21 3 13 0.08 1 0 0 1
...............................................................................................TTGTGATACATCACCTTCT......................................................................................................................................... 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:17368419-17368669 - dan_2704 GGTAGCAGCGACGTCTATCCCGTGGGTCCATTCCTGGGCGGAGTGGTGCTGTAAGTACAT--------------------------------------------------------------------------------ATGCTCCACTGCG----CA-----CGG-----------------GGAACAA--AAAC------GAAT---------------AAAAAACTA-TGT------------GGTGG--------------------A---------AAA--ACA-AAA--GC-GCCTGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACTACAGAATCGGCTCG--CCCCAAGGACGTTCCT----AAATCGGTTTCTGCTTCGATTCAATA-AGATA-------ACAATG-----CCAGAAGTTA
droBip1 scf7180000396741:669441-669696 - GGTAGCAGCGACGTCTACCCCGTTGGACCATTCCTGGGCGGAGTGGTGCTGTAAGTACCCCA----------------------------------------------------G------------------------CATGCTTCACTGCG----CACACAG--TCGC--------C------AA-------------------T---------------GAAAAGCTA-TGCGGCTAT-------GTGG--------------------A---------AAA--ACA-AAAGTGG-CACTGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACTACAGAATCGGCTCG--CCCCAAGGACGTTCCT----AAATCGCTTTTGC-TTCGATTTAATA-AGATA-------ACAATG-----CCAGAAGTTA
droKik1 scf7180000302686:1264567-1264820 - GGCAGCAGCGATGTTTATCCCGTGGGTCCATTTCTGGGCGGAGTGGTGCTGTAAGTATTCT-----------------------------------------CCTCG-------T------------------------AATGCTTCACTGCA----TCAA---CGACAC--------A------AA-AAAAAAACTA----------------------------------T--AGCTAGGCA----------------------------------------------------GG-CGGCGCATCTGTGTGG-------AATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACGCCACAGAATCGGCTCTTTTTTCAAGGCCGCCCCCAAGTGAATCGGTTTTGCACTCGATTCAATAAAGAAA-------ACAATGGG--GGAAGGGGTTA
droFic1 scf7180000454065:1815587-1815879 - GGTAGCAGCGATGTCTATCCCGTGGGTCCGTTTCTCGGCGGAGTGGTGCTGTAAGTTCT-CAA-TTC-GCGTAGAAAGTGTCGCATTAAGT---------GGTTCCG-------T------------------------AATGCTCCACTGCA----GACC----CACAT--------C------AAACAA--AAAA------------------A----------------------------------T-GAAA-----AGA----AATGAAAA--AAAAAAAACTAA-AAT--GT-CAGCGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACTACAGAATCGACTCT--CTTCAAGGCCGATACT----AAATCGGTTTTGCACTCGATTCAATA-AGATA-------ACAATG-----GAACGGGTTA
droEle1 scf7180000491000:877128-877369 + GGCAGCAGCGATGTCTACCCGGTGGGTCCGTTTCTCGGCGGAGTGGTGCTGTGAGTA--------------------------------------------------------------------------------------CTCCACTGCA----TA-----CGACAC--------C------CAACAA--AACA------------------A----------------------------------AGGAA------AAA----AA------------TAA--ACA-AAT--GCCAAACGCATCTGTGTGG------GAATTGATTAAATT-------------TTCAAAC---TGTCGTCATGACACCACAGAATCGGTTCT--TCTCAAGGCCGCTACTACATAAATCGGTTTTGCACTCGATGCAATA-GGATA-------GCAATG-----GAATGGGTTA
droRho1 scf7180000779277:2648-2929 - GGCAGCAGCGATGTCTACCCGGTGGGTCCGTTTCTCGGCGGAGTGGTGCTGTAAGTTCT-CAA-TTC-ACTTAGAAAGTGTCGCAGTAAGT---------GGTTCCG-------T------------------------AATGCTCCACTGCA----TG-----CGACAT--------C------AAACAA--AATA------G----------------------------------------------AG--------------------A---------AAA--ACA-AAA--GC-CAACGCATAAGTGTGG------GAATTGATTAAATT-------------TTCGAAC---TGTCGTCATGACACTACAGAATCGGCTCT--TTTCAAGGCCGCTTCTACATAAATCGGTTTTGCACTCGATTCAATA-AGATA-------ACAATGGAATGGAATGGGTTA
droBia1 scf7180000302334:911247-911520 - GGCAGCAGCGACGTCTACCCCGTGGGTCCATTTCTCGGCGGAGTGGTGCTGTAAGTGCC-CAA-TTC-ACTCGGGCGGCGTAGCATTAAGT---------GCTTCCG-------T------------------------GATGCTCCACTGCT----TG-----CGCCAC--------C------AA------AGT---------------------------------------------------GGGGG--------------------A---------AAA--CCA-GAA--GT-CGGCGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACCACAGAATCGG-TCT--CCTCAAGGCCGCTG-A----AAATCGGT-TTGCACTCGGTTCAATA-AGATAGCAAAAAACAATG-----GAATCGGTTA
droTak1 scf7180000415795:909138-909405 + GGTAGCAGCGATGTCTATCCCGTGGGTCCATTTCTCGGCGGAGTGGTGCTGTAAGTTCT-CAT-TTC-TC------------------AGTGGGGATTCCGATTCCG-------T------------------------GATGCTCCACTGCA----TA-----TG-----------------------------------G-------------------------------------------GTGGCGGAATA--------AAAAAGTGA----------------A-AAA--GT-GAACGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACTACAGAATCGGCTCT--TTTCAAGGCCGCCACT----AAATCGGTTTTGCACTCGATTCAATA-AGATAGCAAATAACAATG-----GAATCGGTTA
droEug1 scf7180000408844:220340-220622 + GGTAGCAGTGACATCTATCCCGTGGGTCCATTTCTCGGTGGAGTGGTGCTGTAAGTTCATCAAATTG-ACTTAGAAAGTGTAGCATTAAGT-------GGGTTTTCG-------T------------------------GATGCTCCAATGAA----TG-----TGACAT--------GTAAGGGGGTCAA--AAAG------A--------------------------------------------------------------------A---AA----AAA--ACA-AAT--GC-CAGTGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACTACAGAATCGGCTCT--CTTCAAGGCCGCTACT----AAATCGGTTTTGCACTCGATTCAATA-AGATA-------ACAATG-----GAATCGGTTA
dm3 chr3L:15494311-15494591 + GGTAGCAGCGACGTCTACCCGGTGGGCCCATTTCTCTTCGGAGTGGTGCTGTAAGTAACCTAA-TT--------------------------------GGGATTCCG-------T------------------------GATGCTCCACTGCA----TG-----CGACAT--------C------GAAAAAAAAACTAGTGGG---------------------------------------CAGGGGGCAGGAAA--------AGCGAGTGA---AA----AGA--ACA-AAA--GC-CAACGCATCTGTGTGG------GAATTGATTAAATT-------------TTAGAAC---TGTCGCCATGACAGCACAGAATCGAGTCT--CTTCAAGGCCGCCAGT----GAATCGGTTTTGCACACAATTCAAGA-AGATA-------ACAATG-----GAATCGATTA
droSim2 3l:15127776-15128060 + dsi_1957 GGTAGCAGCGACGTCTACCCGGTGGGCCCGTTTCTCTTCGGAGTGGTGCTGTAAGTAACCTAA-TT--------------------------------GGGATTCCG-------T------------------------GATGCTCCACTGCA----TA-----CGACAT--------C------GAGG--AAAACTAGTGGG---------------------------------------CAGGGGGCAGGAAAAGCGAA--AGCGAGTTA---AA----AAC--ACA-AAA--GC-CAACGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACAGCACAGAATCGAGTCT--CTTCAAGGCCGCCAGT----GAATCGGTTTTGCACTTGATTCAAGA-AGATA-------ACAATG-----GAATCGATTA
droSec2 scaffold_0:7603686-7603962 + GGTAGCAGCGACGTCTACCCGGTGGGCCCATTTCTCTTCGGAGTGGTGCTGTAAGTAACCTAA-TT--------------------------------GGGATTCCG-------T------------------------GATGCTCCACTGCA----TA-----CGACAT--------C------GAAG--AAAACTAGTGGG---------------------------------------CAGGGGGCAGGAAA--------AGCGAGTGA---------AAA--ACA-AAA--GC-CAATGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACAGCACAGAATCGAGTCT--CCTCAAGGCCGCCAGT----GAATCGGTTTTGCACTTGATTCAAGA-AGATA-------ACAATG-----GAATCGATTA
droYak3 v2_chr3L_random_081:115410-115700 + GGTAGCAGCGACGTCTACCCCGTGGGACCTTTCCTCTTCGGAGTGGTGCTGTAAGTAGCCCAA-TTG-G-------------------------------CTGTCCG-------T------------------------GATGCTTCACTGCA----T--------------------C------GCAG--AGAACTAGTGGGCGAA---------------GAAA-ACTAGT-----------GGGGGCAGGAAA--------AGAGAGCGG---AA----AAC--ACAAAAA--GG-CCGCGCATCTGTGTGGGAATGGGAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACCACAGAATCGACTCT--CCCCAAGGCCGCCGCC----GAATCGGTTTTGCACTCGATTCGGGA-AGATA-------ACAATG-----GAATCGGTTA
droEre2 scaffold_4784:17750270-17750516 + GGCAGCAGCGACGTCTACCCGGTGGGACCTTTTCTCTTCGGAGTGGTGCTGTAAGTAGC------------------------------------------------------------------------------------CTCCACTGCA----T--------------------C------GCAG--AACACCAGTGG-------------------------------------------GGGGCAGGAA---------AGAGAGCGG---AA----ACT--ACA-AAA--GC-CAGCGCATCTGTGTGG------CAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACCACAGAATCGACTCT--CCTCAAGGCCGTTCCG----AATTCGTTTTTGCCCTCGATTCGAGA-AGATA-------ACAATG-----GAATCGATTA
dp5 XR_group6:257035-257249 - dps_2954 GGCAGCAGCGATGTTTATCCAGTCGGACCGTTTCTAGGCGGCGTGGTCCTGTAAGTAC------------------------------------------------G-------T------------------------GCCCCTGCACTACA----CACACTG--TCAT--------C------GAAG---------------------------------------------------------------------------------------------------------------GGTGCATCTGTGTGG------GCATTGATTAAATT-------------TTTGAAT---TGTCGCCATGACACCGCAGAATCGGTTAG---CTCAAGGACGCACCT----AAAATCGTTTCACGTTCTATTCAATG-ATTCA-------GAAATT-----G--GCGATTA
droPer2 scaffold_12:944286-944500 - GGCAGCAGCGATGTTTATCCAGTCGGACCGTTTCTAGGCGGCGTGGTCCTGTAAGTAC------------------------------------------------G-------T------------------------GCCCCTGCACTACA----CACACTG--TCAT--------C------GAAG---------------------------------------------------------------------------------------------------------------AGTGCATCTGTGTGG------GCATTGATTAAATT-------------TTTGAAT---TGTCGCCATGACACCGCAGAATCGGTTAG---CTCAAGGACGCACCT----AAAATCGTTTTACGTTCTATTCAATG-ATACA-------GAAATT-----G--GCGATTA
droWil2 scf2_1100000004768:448368-448574 - GGAAGCAGCGATGTCTATCCCGTTGGTCCATTTCTTGGTGGTATTGTTTTGTAAGTAAATTT--TTG-T-------------------------------CTATTTT--------------------------------TACGGTTCACTAAT----CC--------CACAAAAACACACACA---------------------CACTCAAACCCA----------------T--AG----------------AA------AGA--------------GAG---A--ATA-GCA-TTACATTTGAATCTGTGTGA------AAATTGATTAAATTTCGTTTTTTTCTTTTTGAATTTTTGTAGCCATGACACT------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:20271773-20271982 + dvi_20728 GGCAGCAGCGATGTTTATCCCGTTGGACCGTTTTTGGGCGGTATTGTGCTGTAAGTAAA-AAA-AAACCCATAAAAAA-------------------CACAAAATAG-------C------------------------GCCGCTTGACTGCA----CACACA----CAC--------ACACA---------------------CAGACAAACACAC------------------AG--------------------------A----TAGCAATA--GAAAAAATCACA---------AATTGTAGCCGTGTGA-------AATTGATTAAATT------------TTTTGAAT---TGTCGCCATGACGCTGCCAAAT-----------------------------------------------------------------------------------------
droMoj3 scaffold_6680:7974842-7975074 + GGCAGCAGCGATATTTATCCCATTGGACCATTTCTAGGCGGTATAGTGCTGTAAGTGCTATAA-TTCTAAACAAACCGTAAACAAAA---TA----GTGCAATTT----------------------------------CACGCTCAACTGCA----CACAAA----CAC--------ATACA---------------------GAAACTAACACT-----AGAAC-ACTAATATAG-----------ATAGA-------------------------CAA---A--AAA-GTA--GC-ATTTGCAACTGTGTAT-------AATTGATTAAATT------------TTTTGAAT---TGTCGCCATGACGGTGCCAAATGGGTT------------------------------------------------------------------------------------
droGri2 scaffold_5168:3843-4093 + CAGTCTAGCGATGTTTATCCCGTCGAACCGTTTTTGGGCGGAATTGTGCTGTGAGTGTT-TAC-------------------------------------CTATATGTTCCCAAGCATATTCGAACGAAAATGTAATTAAATGCAATGCCGCACACACACACAC--ACAT--------A------GA-----------------GAGACGAACACACACACAGAAC-AGT------------------GCTCAACA--------AACAA---------------A--TAA-AAA--AT-AATTGCAACTGTGTGA-------AATTGATTACATTTGTTGAATTGTTTTTTGAGT---TGTCGCCATGACACTGCAAAAT-----------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GGTAGCAGCGACGTCTATCCCGTGGGTCCATTCCTGGGCGGAGTGGTGCTGTAAGTACAT--------------------------------------------------------------------------------ATGCTCCACTGCG----CA-----CGG-----------------GGAACAA--AAAC------GAAT---------------AAAAAACTA-TGT------------GGTGG--------------------A---------AAA--ACA-AAA--GC-GCCTGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACTACAGAATCGGCTCG--CCCCAAGGACGTTCCT----AAATCGGTTTCTGCTTCGATTCAATA-AGATA-------ACAATG-----CCAGAAGTTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................CTCCACTGCG----CA-----CGG-----------------GGAACA.......................................................................................................................................................................................................................................................................................2119.009200322
.............................ATTCCTGGGCGGAGTGGTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2116.006100014
...............................................................................................................................................CTCCACTGCG----CA-----CGG-----------------GGAAC........................................................................................................................................................................................................................................................................................2016.006100203
................................................................................................................................................TCCACTGCG----CA-----CGG-----------------GGAACA.......................................................................................................................................................................................................................................................................................2014.004100120
...............................................................................................................................................CTCCACTGCG----CA-----CGG-----------------GGAA.........................................................................................................................................................................................................................................................................................1913.003000201
...AGCAGCGACGTCTATCCCGTGGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002011000
...............................................................................................................................................CTCCACTGCG----CA-----CGG-----------------GGAACAA--....................................................................................................................................................................................................................................................................................2212.002000200
.............................ATTCCTGGGCGGAGTGGTGCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000002
.........GACGTCTATCCCGTGGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.....................GTGGGTCCATTCCTGGGCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.GTAGCAGCGACGTCTATCCCGTGGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.GTAGCAGCGACGTCTATCCCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
......AGCGACGTCTATCCCGTGGGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................................................AT--------------------------------------------------------------------------------ATGCTCCACTGCG----CA-----CG...............................................................................................................................................................................................................................................................................................................1911.001000001
............................CATTCCTGGGCGGAGTGGTGCTC..................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
................................................................................................................................................TCCACTGCG----CA-----CGG-----------------GGAACAA--....................................................................................................................................................................................................................................................................................2111.001100000
.............................ATTCCTGGGCGGAGTGGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100
................................CCTGGGCGGAGTGGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.......................GGGTCCATTCCTGGGCGGAGTGGTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.............................ATTCCTGGGCGGAGTGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.............................ATTCCTGGGCGGAGTGGTGCTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
GGTAGCAGCGACGTCTATCCCGTGGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.............................ATTCCTGGGCGGAGTGGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.......GCGACGTCTATCCCGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...............................................................................................................................................CTCCACTGCG----CA-----CGG-----------------GGAACT.......................................................................................................................................................................................................................................................................................2111.001000001
...AGCAGCGACGTCTATCCCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
...AGCAGCGACGTCTATCCCGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
......................TGGGTCCATTCCTGGGCGGAGTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
............................CATTCCTGGGCGGAGTGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................CATTCCTGGGCGGAGTGGTGCTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...AGCAGCGACGTCTATCCCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..............................TTCCTGGGCGGAGTGGTGCTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2420.501000001
................................CCTGGGCGGAGTGGTGCTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2240.251010000
droBip1
GGTAGCAGCGACGTCTACCCCGTTGGACCATTCCTGGGCGGAGTGGTGCTGTAAGTACCCCA----------------------------------------------------G------------------------CATGCTTCACTGCG----CACACAG--TCGC--------C------AA-------------------T---------------GAAAAGCTA-TGCGGCTAT-------GTGG--------------------A---------AAA--ACA-AAAGTGG-CACTGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACTACAGAATCGGCTCG--CCCCAAGGACGTTCCT----AAATCGCTTTTGC-TTCGATTTAATA-AGATA-------ACAATG-----CCAGAAGTTASizeHit CountTotal NormTotal
No Reads
droKik1
GGCAGCAGCGATGTTTATCCCGTGGGTCCATTTCTGGGCGGAGTGGTGCTGTAAGTATTCT-----------------------------------------CCTCG-------T------------------------AATGCTTCACTGCA----TCAA---CGACAC--------A------AA-AAAAAAACTA----------------------------------T--AGCTAGGCA----------------------------------------------------GG-CGGCGCATCTGTGTGG-------AATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACGCCACAGAATCGGCTCTTTTTTCAAGGCCGCCCCCAAGTGAATCGGTTTTGCACTCGATTCAATAAAGAAA-------ACAATGGG--GGAAGGGGTTASizeHit CountTotal NormTotal
No Reads
droFic1
GGTAGCAGCGATGTCTATCCCGTGGGTCCGTTTCTCGGCGGAGTGGTGCTGTAAGTTCT-CAA-TTC-GCGTAGAAAGTGTCGCATTAAGT---------GGTTCCG-------T------------------------AATGCTCCACTGCA----GACC----CACAT--------C------AAACAA--AAAA------------------A----------------------------------T-GAAA-----AGA----AATGAAAA--AAAAAAAACTAA-AAT--GT-CAGCGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACTACAGAATCGACTCT--CTTCAAGGCCGATACT----AAATCGGTTTTGCACTCGATTCAATA-AGATA-------ACAATG-----GAACGGGTTASizeHit CountTotal NormTotal
No Reads
droEle1
GGCAGCAGCGATGTCTACCCGGTGGGTCCGTTTCTCGGCGGAGTGGTGCTGTGAGTA--------------------------------------------------------------------------------------CTCCACTGCA----TA-----CGACAC--------C------CAACAA--AACA------------------A----------------------------------AGGAA------AAA----AA------------TAA--ACA-AAT--GCCAAACGCATCTGTGTGG------GAATTGATTAAATT-------------TTCAAAC---TGTCGTCATGACACCACAGAATCGGTTCT--TCTCAAGGCCGCTACTACATAAATCGGTTTTGCACTCGATGCAATA-GGATA-------GCAATG-----GAATGGGTTASizeHit CountTotal NormTotal
No Reads
droRho1
GGCAGCAGCGATGTCTACCCGGTGGGTCCGTTTCTCGGCGGAGTGGTGCTGTAAGTTCT-CAA-TTC-ACTTAGAAAGTGTCGCAGTAAGT---------GGTTCCG-------T------------------------AATGCTCCACTGCA----TG-----CGACAT--------C------AAACAA--AATA------G----------------------------------------------AG--------------------A---------AAA--ACA-AAA--GC-CAACGCATAAGTGTGG------GAATTGATTAAATT-------------TTCGAAC---TGTCGTCATGACACTACAGAATCGGCTCT--TTTCAAGGCCGCTTCTACATAAATCGGTTTTGCACTCGATTCAATA-AGATA-------ACAATGGAATGGAATGGGTTASizeHit CountTotal NormTotal
No Reads
droBia1
GGCAGCAGCGACGTCTACCCCGTGGGTCCATTTCTCGGCGGAGTGGTGCTGTAAGTGCC-CAA-TTC-ACTCGGGCGGCGTAGCATTAAGT---------GCTTCCG-------T------------------------GATGCTCCACTGCT----TG-----CGCCAC--------C------AA------AGT---------------------------------------------------GGGGG--------------------A---------AAA--CCA-GAA--GT-CGGCGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACCACAGAATCGG-TCT--CCTCAAGGCCGCTG-A----AAATCGGT-TTGCACTCGGTTCAATA-AGATAGCAAAAAACAATG-----GAATCGGTTASizeHit CountTotal NormTotal
No Reads
droTak1
GGTAGCAGCGATGTCTATCCCGTGGGTCCATTTCTCGGCGGAGTGGTGCTGTAAGTTCT-CAT-TTC-TC------------------AGTGGGGATTCCGATTCCG-------T------------------------GATGCTCCACTGCA----TA-----TG-----------------------------------G-------------------------------------------GTGGCGGAATA--------AAAAAGTGA----------------A-AAA--GT-GAACGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACTACAGAATCGGCTCT--TTTCAAGGCCGCCACT----AAATCGGTTTTGCACTCGATTCAATA-AGATAGCAAATAACAATG-----GAATCGGTTASizeHit CountTotal NormTotal
No Reads
droEug1
GGTAGCAGTGACATCTATCCCGTGGGTCCATTTCTCGGTGGAGTGGTGCTGTAAGTTCATCAAATTG-ACTTAGAAAGTGTAGCATTAAGT-------GGGTTTTCG-------T------------------------GATGCTCCAATGAA----TG-----TGACAT--------GTAAGGGGGTCAA--AAAG------A--------------------------------------------------------------------A---AA----AAA--ACA-AAT--GC-CAGTGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACTACAGAATCGGCTCT--CTTCAAGGCCGCTACT----AAATCGGTTTTGCACTCGATTCAATA-AGATA-------ACAATG-----GAATCGGTTASizeHit CountTotal NormTotal
No Reads
dm3
GGTAGCAGCGACGTCTACCCGGTGGGCCCATTTCTCTTCGGAGTGGTGCTGTAAGTAACCTAA-TT--------------------------------GGGATTCCG-------T------------------------GATGCTCCACTGCA----TG-----CGACAT--------C------GAAAAAAAAACTAGTGGG---------------------------------------CAGGGGGCAGGAAA--------AGCGAGTGA---AA----AGA--ACA-AAA--GC-CAACGCATCTGTGTGG------GAATTGATTAAATT-------------TTAGAAC---TGTCGCCATGACAGCACAGAATCGAGTCT--CTTCAAGGCCGCCAGT----GAATCGGTTTTGCACACAATTCAAGA-AGATA-------ACAATG-----GAATCGATTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................ATTTCTCTTCGGAGTGGTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...AGCAGCGACGTCTACCCGGTGGGCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTTCTCTTCGGAGTGGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000001000
............................CATTTCTCTTCGGAGTGGTGCTGAC................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CATGACAGCACAGAATCGAGT....................................................................................2112.0020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...AGCAGCGACGTCTACCCGGTGGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................CATTTCTCTTCGGAGTGGTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...............................................................................................................................................................................................................................................................................GA---AA----AGA--ACA-AAA--GC-CAACGC....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCGGAGTGGTGCTGTAAGTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................GCGAGTGA---AA----AGA--ACA-AAA--GC-..........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................GAAA--------AGCGAGTGA---AA----AGA--AC....................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................ACTGCA----TG-----CGACAT--------C------GAA.........................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GTCT--CTTCAAGGCCGCCAGT----GAATCGG.....................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GTGCTGTAAGTAACCTAA-T....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TCTCTTCGGAGTGGTGCTGAC................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GTCGCCATGACAGCACAGAATCG.......................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................AA-TT--------------------------------GGGATTCCG-------T------------------------GATG......................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................CTTCGGAGTGGTGCTGAC................................................................................................................................................................................................................................................................................................................................................................................................................................1841.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GTGGGCCCATTTCTCTTCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ATGACAGCACAGAATCGAGTC...................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........GACGTCTACCCGGTGGGCCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................TT--------------------------------GGGATTCCG-------T------------------------GATGCTCCA.................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......AGCGACGTCTACCCGGTGGGCCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................ACTGCA----TG-----CGACAT--------C------GAAAAA......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGA-AGATA-------ACAATG-----GAA.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................ATTTCTCTTCGGAGTGGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGA-AGATA-------ACAATG-----GAATC.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...AGCAGCGACGTCTACCCGGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................AACCTAA-TT--------------------------------GGGATTCCG-------T------------------------GA........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTTCTCTTCGGAGTGGTGCTGAC................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GTAGCAGCGACGTCTACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TGATTAAATT-------------TTAGAAC---TGTCG..........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGCGACGTCTACCCGGTGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TAACCTAA-TT--------------------------------GGGATTCCG-------T------------------------G.........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TGTGTGG------GAATTGATTAAATT-------------.........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................CTTCGGAGTGGTGCTGTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................CAGT----GAATCGGTTTTGCACAC...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....GCAGCGACGTCTACCCGGTGGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AA--GC-CAACGCATCTGTGTGG------G...................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......GCGACGTCTACCCGGTGGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CATTTCTCTTCGGAGTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGGAGTGGTGCTGTAAGTAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................CTCCACTGCA----TG-----CGACAT--------C------G...........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TGGGCCCATTTCTCTTCGGAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TAGCAGCGACGTCTACCCGGTGGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ATTTCTCTTCGGAGTGGTGCTGAC................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCGACGTCTACCCGGTGGGCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CCATTTCTCTTCGGAGTGGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CTCTTCGGAGTGGTGCTGAC................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................GCGAGTGA---AA----AGA--ACA-AAA--GC-CAA.......................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................ATTAAATT-------------TTAGAAC---TGTCGC.........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA-AGATA-------ACAATG-----GAACT.....1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
droSim2
GGTAGCAGCGACGTCTACCCGGTGGGCCCGTTTCTCTTCGGAGTGGTGCTGTAAGTAACCTAA-TT--------------------------------GGGATTCCG-------T------------------------GATGCTCCACTGCA----TA-----CGACAT--------C------GAGG--AAAACTAGTGGG---------------------------------------CAGGGGGCAGGAAAAGCGAA--AGCGAGTTA---AA----AAC--ACA-AAA--GC-CAACGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACAGCACAGAATCGAGTCT--CTTCAAGGCCGCCAGT----GAATCGGTTTTGCACTTGATTCAAGA-AGATA-------ACAATG-----GAATCGATTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...AGCAGCGACGTCTACCCGGTGGGCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.00402000000000200000
...AGCAGCGACGTCTACCCGGTGGGCCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200100000000100000
......................................................................................................TTCCG-------T------------------------GATGCTCCACTGCA----T.......................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
............................CGTTTCTCTTCGGAGTGGTGCTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
.............................................................AA-TT--------------------------------GGGATTCCG-------T------------------------GATGCTC...................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............................GTTTCTCTTCGGAGTGGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
droSec2
GGTAGCAGCGACGTCTACCCGGTGGGCCCATTTCTCTTCGGAGTGGTGCTGTAAGTAACCTAA-TT--------------------------------GGGATTCCG-------T------------------------GATGCTCCACTGCA----TA-----CGACAT--------C------GAAG--AAAACTAGTGGG---------------------------------------CAGGGGGCAGGAAA--------AGCGAGTGA---------AAA--ACA-AAA--GC-CAATGCATCTGTGTGG------GAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACAGCACAGAATCGAGTCT--CCTCAAGGCCGCCAGT----GAATCGGTTTTGCACTTGATTCAAGA-AGATA-------ACAATG-----GAATCGATTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...AGCAGCGACGTCTACCCGGTGGGCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.00100730
...AGCAGCGACGTCTACCCGGTGGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020200
............................CATTTCTCTTCGGAGTGGTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
..............................TTTCTCTTCGGAGTGGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
......AGCGACGTCTACCCGGTGGGCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.....CAGCGACGTCTACCCGGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.GTAGCAGCGACGTCTACCCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
...AGCAGCGACGTCTACCCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.............................ATTTCTCTTCGGAGTGGTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.............................ATTTCTCTTCGGAGTGGTGCTGTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
...AGCAGCGACGTCTACCCGGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
droYak3
GGTAGCAGCGACGTCTACCCCGTGGGACCTTTCCTCTTCGGAGTGGTGCTGTAAGTAGCCCAA-TTG-G-------------------------------CTGTCCG-------T------------------------GATGCTTCACTGCA----T--------------------C------GCAG--AGAACTAGTGGGCGAA---------------GAAA-ACTAGT-----------GGGGGCAGGAAA--------AGAGAGCGG---AA----AAC--ACAAAAA--GG-CCGCGCATCTGTGTGGGAATGGGAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACCACAGAATCGACTCT--CCCCAAGGCCGCCGCC----GAATCGGTTTTGCACTCGATTCGGGA-AGATA-------ACAATG-----GAATCGGTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...AGCAGCGACGTCTACCCCGTGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2522.00400010030000
............................CTTTCCTCTTCGGAGTGGTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2221.50300000030000
.........................GACCTTTCCTCTTCGGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................1921.50301200000000
.............................TTTCCTCTTCGGAGTGGTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2121.50310010010000
...AGCAGCGACGTCTACCCCGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2321.00200000020000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCACTCGATTCGGGA-.................................2011.00101000000000
...AGCAGCGACGTCTACCCCGTGGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.00200000020000
...AGCAGCGACGTCTACCCCGTGGGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2721.00200000020000
...AGCAGCGACGTCTACCCCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.00201000010000
.........................GACCTTTCCTCTTCGGAGTGGTGCTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2920.50100100000000
.....................GTGGGACCTTTCCTCTTCGGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100000010000
............................CTTTCCTCTTCGGAGTGGTGCTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000010000
..............................TTCCTCTTCGGAGTGGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100100000000
...........................CCTTTCCTCTTCGGAGTGGTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50101000000000
.....................................................AGTAGCCCAA-TTG-G-------------------------------CTGTCCG-------...................................................................................................................................................................................................................................................................................................................................................................2120.50101000000000
....GCAGCGACGTCTACCCCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100100000000
............................CTTTCCTCTTCGGAGTGGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50101000000000
....GCAGCGACGTCTACCCCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100010000000
......AGCGACGTCTACCCCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50101000000000
...AGCAGCGACGTCTACCCCGTGGGACCTTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................3020.50100000010000
......AGCGACGTCTACCCCGTGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
....GCAGCGACGTCTACCCCGTGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50101000000000
..................................TCTTCGGAGTGGTGCTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100100000000
.................................CTCTTCGGAGTGGTGCTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2130.33100100000000
...AGCAGCGACGTCTACCCCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.33100100000000
..................................TCTTCGGAGTGGTGCTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000
droEre2
GGCAGCAGCGACGTCTACCCGGTGGGACCTTTTCTCTTCGGAGTGGTGCTGTAAGTAGC------------------------------------------------------------------------------------CTCCACTGCA----T--------------------C------GCAG--AACACCAGTGG-------------------------------------------GGGGCAGGAA---------AGAGAGCGG---AA----ACT--ACA-AAA--GC-CAGCGCATCTGTGTGG------CAATTGATTAAATT-------------TTTGAAC---TGTCGCCATGACACCACAGAATCGACTCT--CCTCAAGGCCGTTCCG----AATTCGTTTTTGCCCTCGATTCGAGA-AGATA-------ACAATG-----GAATCGATTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................GACCTTTTCTCTTCGGAGTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000120
...AGCAGCGACGTCTACCCGGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030001110
...AGCAGCGACGTCTACCCGGTGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020100010
..............CTACCCGGTGGGACCTTTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
....GCAGCGACGTCTACCCGGTGGGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
........................GGACCTTTTCTCTTCGGAGTGGTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
................................TCTCTTCGGAGTGGTGCTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.......................GGGACCTTTTCTCTTCGGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...AGCAGCGACGTCTACCCGGTGGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...AGCAGCGACGTCTACCCGGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
............................................................................................................................................................................................................................................................................................................AGCGCATCTGTGTGG------CAATTGA.............................................................................................................................................2211.0010000100
.......GCGACGTCTACCCGGTGGGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
........................GGACCTTTTCTCTTCGGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
....GCAGCGACGTCTACCCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
...AGCAGCGACGTCTACCCGGTGGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
......................................................................................................................................................................................................................................................................................................................................GATTAAATT-------------TTTGAAC---TGT............................................................................................................1911.0010000010
.GCAGCAGCGACGTCTACCCGGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
............................................................................................................................................................................................................................................................................................................................................ATT-------------TTTGAAC---TGTCGCCATGA....................................................................................................2111.0010000010
........................GGACCTTTTCTCTTCGGAGTGGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
.........GACGTCTACCCGGTGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
.......GCGACGTCTACCCGGTGGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.............................TTTTCTCTTCGGAGTGGTGCTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
.....................................................................................................................................................................................................AGTGG-------------------------------------------GGGGCAGGAA---------AGAGAGC......................................................................................................................................................................................................2211.0010000010
...AGCAGCGACGTCTACCCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000
........................GGACCTTTTCTCTTCGGAGTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.........................GACCTTTTCTCTTCGGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...............................TTCTCTTCGGAGTGGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
dp5
GGCAGCAGCGATGTTTATCCAGTCGGACCGTTTCTAGGCGGCGTGGTCCTGTAAGTAC------------------------------------------------G-------T------------------------GCCCCTGCACTACA----CACACTG--TCAT--------C------GAAG---------------------------------------------------------------------------------------------------------------GGTGCATCTGTGTGG------GCATTGATTAAATT-------------TTTGAAT---TGTCGCCATGACACCGCAGAATCGGTTAG---CTCAAGGACGCACCT----AAAATCGTTTCACGTTCTATTCAATG-ATTCA-------GAAATT-----G--GCGATTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...AGCAGCGATGTTTATCCAGTCGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020200000000
..............TTATCCAGTCGGACCGTTTCTAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
.........GATGTTTATCCAGTCGGACCGTTTCTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.........GATGTTTATCCAGTCGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
...............................TTCTAGGCGGCGTGGTCCTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................AGTCGGACCGTTTCTAGGCGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.............................GTTTCTAGGCGGCGTGGTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATG-ATTCA-------GAAATT-----G--GCG....2111.0010100000000
.........GATGTTTATCCAGTCGGACCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
.............................GTTTCTAGGCGGCGTGGTCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......AGCGATGTTTATCCAGTCGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
GGCAGCAGCGATGTTTATCCAGTCGGACCGTTTCTAGGCGGCGTGGTCCTGTAAGTAC------------------------------------------------G-------T------------------------GCCCCTGCACTACA----CACACTG--TCAT--------C------GAAG---------------------------------------------------------------------------------------------------------------AGTGCATCTGTGTGG------GCATTGATTAAATT-------------TTTGAAT---TGTCGCCATGACACCGCAGAATCGGTTAG---CTCAAGGACGCACCT----AAAATCGTTTTACGTTCTATTCAATG-ATACA-------GAAATT-----G--GCGATTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........GATGTTTATCCAGTCGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2018.008701000
...........TGTTTATCCAGTCGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
...............TATCCAGTCGGACCGTTTCTAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003300000
..CAGCAGCGATGTTTATCCAGTCGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
............GTTTATCCAGTCGGACCGTTTCTAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
...............TATCCAGTCGGACCGTTTCTAGGCGGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2912.002200000
.GCAGCAGCGATGTTTATCCAGTCGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
..........ATGTTTATCCAGTCGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
..............TTATCCAGTCGGACCGTTTCTAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
......AGCGATGTTTATCCAGTCGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....GCAGCGATGTTTATCCAGTCGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
............................CGTTTCTAGGCGGCGTGGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...........................CCGTTTCTAGGCGGCGTGGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
...AGCAGCGATGTTTATCCAGTCGGACCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
................ATCCAGTCGGACCGTTTCTAGGCGGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................ATCGGTTAG---CTCAAGGACGCAC..................................................................2211.001100000
.....................GTCGGACCGTTTCTAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
................ATCCAGTCGGACCGTTTCTAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...AGCAGCGATGTTTATCCAGTCGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
droWil2
GGAAGCAGCGATGTCTATCCCGTTGGTCCATTTCTTGGTGGTATTGTTTTGTAAGTAAATTT--TTG-T-------------------------------CTATTTT--------------------------------TACGGTTCACTAAT----CC--------CACAAAAACACACACA---------------------CACTCAAACCCA----------------T--AG----------------AA------AGA--------------GAG---A--ATA-GCA-TTACATTTGAATCTGTGTGA------AAATTGATTAAATTTCGTTTTTTTCTTTTTGAATTTTTGTAGCCATGACACT------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.GAAGCAGCGATGTCTATCCCGTTGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00300120
............................CATTTCTTGGTGGTATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..............CTATCCCGTTGGTCCATTTCTTGGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
..............CTATCCCGTTGGTCCATTTCTTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
droVir3
GGCAGCAGCGATGTTTATCCCGTTGGACCGTTTTTGGGCGGTATTGTGCTGTAAGTAAA-AAA-AAACCCATAAAAAA-------------------CACAAAATAG-------C------------------------GCCGCTTGACTGCA----CACACA----CAC--------ACACA---------------------CAGACAAACACAC------------------AG--------------------------A----TAGCAATA--GAAAAAATCACA---------AATTGTAGCCGTGTGA-------AATTGATTAAATT------------TTTTGAAT---TGTCGCCATGACGCTGCCAAAT-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......AGCGATGTTTATCCCGTTGGACCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.005000000000000000000000000000000000000000000000000000000000000005
.........GATGTTTATCCCGTTGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..............TTATCCCGTTGGACCGTTTTTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000100000000000000000000000000000000000000000000000000000
.......GCGATGTTTATCCCGTTGGACCGTTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.......................TGGACCGTTTTTGGGCGGTATT........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
.........GATGTTTATCCCGTTGGACCGTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
.............................GTTTTTGGGCGGTATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
................ATCCCGTTGGACCGTTTTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....GCAGCGATGTTTATCCCGTTGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
......AGCGATGTTTATCCCGTTGGACCGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
.........GATGTTTATCCCGTTGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
......AGCGATGTTTATCCCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000001000000000000000000000000000000000000000000000000000000
...............TATCCCGTTGGACCGTTTTTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
....................CGTTGGACCGTTTTTGGGCGGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.............................GTTTTTGGGCGGTATTGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
...AGCAGCGATGTTTATCCCGTTGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................CA----CAC--------ACACA---------------------CAGACAAACA...............................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CACACA----CAC--------ACACA---------------------CAGACAA..................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
GGCAGCAGCGATATTTATCCCATTGGACCATTTCTAGGCGGTATAGTGCTGTAAGTGCTATAA-TTCTAAACAAACCGTAAACAAAA---TA----GTGCAATTT----------------------------------CACGCTCAACTGCA----CACAAA----CAC--------ATACA---------------------GAAACTAACACT-----AGAAC-ACTAATATAG-----------ATAGA-------------------------CAA---A--AAA-GTA--GC-ATTTGCAACTGTGTAT-------AATTGATTAAATT------------TTTTGAAT---TGTCGCCATGACGGTGCCAAATGGGTT------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................CATTGGACCATTTCTAGGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droGri2
CAGTCTAGCGATGTTTATCCCGTCGAACCGTTTTTGGGCGGAATTGTGCTGTGAGTGTT-TAC-------------------------------------CTATATGTTCCCAAGCATATTCGAACGAAAATGTAATTAAATGCAATGCCGCACACACACACAC--ACAT--------A------GA-----------------GAGACGAACACACACACAGAAC-AGT------------------GCTCAACA--------AACAA---------------A--TAA-AAA--AT-AATTGCAACTGTGTGA-------AATTGATTACATTTGTTGAATTGTTTTTTGAGT---TGTCGCCATGACACTGCAAAAT-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....CTAGCGATGTTTATCCCGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50101
.........................AACCGTTTTTGGGCGGAATTGTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50110
..................................................................................................................................................................................................................................................................................................................................AATTGATTACATTTGTTGAAT..............................................................................................................................2120.50110
...............................TTTTGGGCGGAATTGTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50110

Generated: 05/18/2015 at 05:11 AM