ID:

dan_2677

 Coordinate:

scaffold_13337:16556765-16557018 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-44.6 -44.6 -44.5

Flybase annnotation

exon [dana_GLEANR_8537:8]; CDS [Dana\GF23761-cds]; CDS [Dana\GF23761-cds]; exon [dana_GLEANR_8537:9]; intron [Dana\GF23761-in]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGCCGCCGCCCAAGCAGTCGGCCGGCAATATAATCAAGAACTTCTTCAAGTAATAAAAAAAAAAGCTAATCACCAAGCTGTTTCTTTCGCTGTTCATGTTGAAGCTAACCCTGCTGCTAGACGGCTGCTAATCCTTAAGAATCCTTAAAATTTTTGGCTACTTTTAAAGAGCATGTGTTTTTTGAAAGAATAACCCCAGCGATGAGCTAGGTCTTGAATGTTTTTGTTCCTCTTCTAAGGCTCGAAAGGATAAAAATCTTATAATATATAATTTCTAATCCTTTATCGTCCATATCCTTGTAGATCCTTTGTGCCACCGGTACGTGACGAGGAGAGTGAAACGCAGCGCAAGG
**************************************************..((((((((...(((......(((.((((.......((((((....((((..(((.......)))....))))...(((((...(((((....))))).....)))))..((((((((((((....))))))))))))........))))))..)))).)))))).....))))))))..........(((...(((((((..((((..(((...)))..))))...)))))))...))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
 M044
female body
 V055
head
 V039
embryo
................................................................................................................................................................................................................................................GCTCGAAAGGATAAAAATCT.............................................................................................. 20 0 1 2.00 2 0 2 0 0 0
...................................................................................................................................................................................................................................................................................................................................CGTGACGAGGAGAGTGAAACGC......... 22 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GAGGAGAGTGAAACGCAGCGCA... 22 0 1 1.00 1 0 0 1 0 0
...........................................................................AAGCTGTTTCTTTCGCTGTTCATGC.............................................................................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
.........................................................AAAAAAAAGCAAATCACCA...................................................................................................................................................................................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0
.......................................................AAAAAAAAAAGCAAATCACC....................................................................................................................................................................................................................................................................................... 20 1 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................GACGAGGGGAGTGAAAC........... 17 1 2 0.50 1 0 0 0 1 0
........................................................AAAAAAAAAGCTAAACACC....................................................................................................................................................................................................................................................................................... 19 1 3 0.33 1 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GAGTGAAGCGTAGCGCAGGG 20 3 3 0.33 1 0 0 0 0 1
............................................................................................GCTCATGTTGAAGCTCACC................................................................................................................................................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0
.......................................................AAACAAAAAAGCTAATGACC....................................................................................................................................................................................................................................................................................... 20 2 5 0.20 1 1 0 0 0 0
...........................................................................................................................................................................................................TGAGCTAGGACTGGCATGTT................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 1
.......................................................AAAAAAAACAGCTAACCACC....................................................................................................................................................................................................................................................................................... 20 2 6 0.17 1 1 0 0 0 0
..............................................................................................TCATGTTGAAGCTCACCA.................................................................................................................................................................................................................................................. 18 2 7 0.14 1 1 0 0 0 0
.......................................................AAAAAAAAAAGCTACACACCA...................................................................................................................................................................................................................................................................................... 21 2 10 0.10 1 1 0 0 0 0
.........................................................AAAAAAAAGCCTATCACCA...................................................................................................................................................................................................................................................................................... 19 2 11 0.09 1 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................AACGAGGGGAGTGAAAC........... 17 2 13 0.08 1 0 0 0 1 0
................................................................................................................................................................................................................................................................ATCTCATAATCTATCATTTCT............................................................................. 21 3 14 0.07 1 0 0 0 0 1
...............................................................................................................................................................................................................................................GGCTCGAAAGGATAGGAAGC............................................................................................... 20 3 15 0.07 1 0 0 0 1 0
.....................................................AGGAAAAAAAAAGCAAATCACC....................................................................................................................................................................................................................................................................................... 22 3 19 0.05 1 1 0 0 0 0
.........................................................AAAAAGAAGCTAACCACC....................................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0
........................................................AAAAAATAAACTAATCACC....................................................................................................................................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0
........................................................GAAAAAAAAGCTAAACACC....................................................................................................................................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0
.........................................................AAAAAAAAGCGGATCACCAC..................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TTCGGCGGCGGGTTCGTCAGCCGGCCGTTATATTAGTTCTTGAAGAAGTTCATTATTTTTTTTTTCGATTAGTGGTTCGACAAAGAAAGCGACAAGTACAACTTCGATTGGGACGACGATCTGCCGACGATTAGGAATTCTTAGGAATTTTAAAAACCGATGAAAATTTCTCGTACACAAAAAACTTTCTTATTGGGGTCGCTACTCGATCCAGAACTTACAAAAACAAGGAGAAGATTCCGAGCTTTCCTATTTTTAGAATATTATATATTAAAGATTAGGAAATAGCAGGTATAGGAACATCTAGGAAACACGGTGGCCATGCACTGCTCCTCTCACTTTGCGTCGCGTTCC
**************************************************..((((((((...(((......(((.((((.......((((((....((((..(((.......)))....))))...(((((...(((((....))))).....)))))..((((((((((((....))))))))))))........))))))..)))).)))))).....))))))))..........(((...(((((((..((((..(((...)))..))))...)))))))...))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V039
embryo
.....................................................................................................CGTCGATTGGGGCGACGAT.......................................................................................................................................................................................................................................... 19 2 1 1.00 1 1 0
..............................................................................................................................................................................................................................................TCCGGGCTTTCCTCGTTTTAGA.............................................................................................. 22 3 2 0.50 1 0 1
............................................................TTTGTCGATTAGTGGGACGAC................................................................................................................................................................................................................................................................................. 21 3 7 0.14 1 1 0
...............................................................................................................................................................................................................................................CAGGGCTTTCCTAGTTTTAGA.............................................................................................. 21 3 7 0.14 1 0 1
.................................................................................................................................................AATTTTGAAAAGCGATGAGAAT........................................................................................................................................................................................... 22 3 7 0.14 1 0 1
....................................................................................................AGTTCGATTGGGTCGACGCT.......................................................................................................................................................................................................................................... 20 3 7 0.14 1 1 0
.....................................................................................................GTTCGATTGGTGCGACGAT.......................................................................................................................................................................................................................................... 19 3 11 0.09 1 1 0
.....................................................................................................CTTCTATTGGGACCACAA........................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:16556715-16557068 - dan_2677 AAGCCGC---------CGCCCAAGCAGTCGGCCGGCAATATAATCAAGAACTTCTTCAAGTAAT---AA--AAA--A-----------A-------------------------------------------------------------------------------------------------AAAGCTAATCACCAAGCTGT---TTCTTTCGCTGTTCATG--TTGAAGC-TAACCC-------------TGC------------------------------------------------------------------------------------------------TGCTAGACGGCT---GCTAATCCT--------------------TAA--GAATCCT-----T-AAAATTTTTGGCTACTTTTAAAGAGCATGTGT------------------------------------------------------------------------------------------------------------------------------------TTTTT--------------------------------------------------------GAAAGAATAACCCCAGCGATGAGCTAGGTCTTGAATGTTTTTGTTCCT---C-TTCTAAGGCTCGAAA--------------------GG------------------------------------------------ATAAAAATCTTATAA-TAT--ATAATTTC------------------TAATCCTT-TA-T-CGTCCATATCCTTGTAGATCCTTTGTGCCACCGGTACGTGACGAGGAGAGTGAAACGCAGCGCAAGG
droBip1 scf7180000396641:82300-82595 - AAGCCGC---------CGCCCAAGCAATCGGCGGGCAATATAATCAAGAACTTCTTCAAGTAAT---AA--TCC---------------TCC--AA------------------------------------------------------------------------------------------CCA------------------------------GTTAATG--TTGAAGC-TAACCC----------------------------------------------------------------------------------------------------------------TGCTAGACAGCT---GCTAACCCT--------------------TAAAAGAGTCCT-----TTAAAA--TCTGGC-----TTAAAAAGCAT-------------------------------------GAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTTTGAATGTTTTTGTTGTTATTCTTTCCAAGGCTCGAAATATTACTT------TCC----------------------T--------------------------------------------ATTAAAAATA-TTAGAT-AG-------------TAATCCT--TA-T-TATCCCTAT-CTTGTAGATCCTTTGTGCCGCCGGTACGTGACGAGGAGAGCGAAACGCAGCGTAAGG
droKik1 scf7180000302486:2755714-2756120 + AAGCCGC---------CACCCAAACAATCCACGGGCAATATTATCAAGAACTTCTTCAAGTAAA---GATAGAG----------------------------------------------------------------------------------------------------------------AGATTAAA--------GTGT---TGTTTTTATCGTTGATT-GGAA-AAC-TAACCC-------------T--------------------------------------------------------------------------------------------------CGCTAGCCAGCTGATGCTAACCCC--------------------TAA--AAATCCCCTTGA------TT------------TGTGTAG-------------------------------------CATGATGCCCA------AACTTGGGGAACT---------------------CT-TAAAGAT-----------TCAAAACTAAAAAATATATA--TGTATCTTTATTTAAGAGTTTAAGGCTCAATCAGCTCTTTTTACTGCTCTGAAATGTATGTGTTCTCCTTATTGAATAACCCTTG---------------------TTTTT-----------------------------------------------------------AC-TTATTTTATT-----------------CTATTGAA--------------------ACT-TTTCTAA------AACAATTTA-----TATTT-ATGTAACAAAAT-T--TTAGATCCTTTGTGCCGCCGGTGCGAGATGAGGAAAGTGAAACGCAGCGAAAGG
droFic1 scf7180000453839:1442332-1442448 + AAGCCAC---------CGCCAAAGCAATCCGCGAGCAATATGATCAAGAACTTCTTCAAGTAAT---GA--GCG----------------------------------------------------------------------------------------------------------------AGAGTTAA--------TTGT---TGTTTC---TGTTGACG--TTC-AGA-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAGCCAGCT---GCTAACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491249:7383467-7383612 - AAGCCACCGCCGCCACCGCCCAAACAGTCCGCCAGCAATATGATCAAAAACTTCTTCAAGTAAT---GA--GCG----------------------------------------------------------------------------------------------------------------AGAATTAA--------TTGT---TGTTTT---CGTTGATG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAGCCAGCT---GCTAACCCGATTTCTGATCCCATAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779672:10203-10343 + AAGCCAC---------CGCCCAAACAATCCACCAGCAATATGATCAAAAACTTCTTCAAGTAAT---GA--GAG----------------------------------------------------------------------------------------------------------------ATAATTAA--------GTGT---TGTTCT---CGTTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAGCCAGCT---GCTAACCCGATTTCTGATCCCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCCTT--------------------------------------------
droBia1 scf7180000302334:297462-297583 - AAGCCAC---------CGCCCAAGCAATCCGCGGGCAATATTATCAAAAACTTCTTCAAGTAAT---GA--AAG--A-----------A---AG--------------------------------------------------------------------------------------------AGAATAAG--------TTAT---TGTTTT---CGTTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCAAGCAAACT---GCTAACCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414445:353344-353465 + AAGCCAC---------CGCCCAAACAATCCACGAGCAATATGATCAAAAACTTCTTCAAGTAAT---GA--GAA--C-----------G---AG--------------------------------------------------------------------------------------------AGAATTAA--------ATGT---TGTT-T---CATTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAGTCAGCT---GCTAATTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409711:1281320-1281464 - AAGCCGC---------CGGTCAAACAGTCCACCAGCAATATGATCAAAAACTTCTTCAAGTAAT---GA--GAG----------------------------------------------------------------------------------------------------------------ATGATTTC--------TTTTTTATGTTTT---CATTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAGCTAAAA---GCTAACCTGATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCTGC---TACTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGA
dm3 chr3L:16059364-16059762 + AAGCCAC---------CGCCCAAACAATCCGCGAGCAATATGATCAAGAACTTCTTCAAGTAAT---GA--GCA----------------------------------------------------------------------------------------------------------------AGATTTAA--------TGGT---TGTTTT---CGTTGACGTGTTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAAAAAGCT---GCTAACTCGATTTTTGCTCCCAAGAAAGC------------GAAGT------TT------------TTTGTAG-------------------------------------CATGATTTTATGAGATTGA--------------------------------CTTTGAACTT-----------TCCGATCGATTGATTAACCGTGTGTG---TTCAAAAAGATTTTAAGGCTCGAA---------------------------------------------------------------------------------------------------------GTGTTGCTACTGCCTTCCAAACGCTCTAGCCGCTATTTAATTTGATGCAATGTTTA-ATAGTTAGTGTTGAA--------------------ACAAATTCTAA------AACTACATA-----TTTTC-ATTCAATCCAAA-CGTGTAGATCCTTTGTGCCACCGGTGCGTGATGAAGAGAGCGAAACGCAGCGGAAGG
droSim2 3l:15678377-15678768 + AAGCCAC---------CGCCCAAACAATCCGCGAGCAATATGATCAAGAACTTCTTCAAGTAAT---GA--GCA----------------------------------------------------------------------------------------------------------------AGATTTAA--------TGGT---TGTTTT---CGTTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAAAAAGTT---GCTAACCCGATTTTTGCTCCCAAGAAAGC------------GAAGT------TT------------TTTGTAG-------------------------------------CATGATTTTATGAGGCTGA--------------------------------CTTTGAA-AT-----------TCCGATCGATTGAATAACCA--TGTG---TTAATAAAGATTTTAAGGCTCGAT---------------------------------------------------------------------------------------------------------GTCTTGCTAATGACTTCCAAAAGCTGCAGCCGCTCTCTAATTTAATGCAATGTATA-ATAGTTAGTGTTGAA--------------------GCAAATTCTAA------AACTACATA-----TTTTC-ACTCAACCCAAA-C--GTAGATCCTTTGTGCCACCGGTGCGTGATGAAGAGAGCGAAACGCAGCGAAAGG
droSec2 scaffold_0:8159330-8159712 + AAGCCAC---------CGCCCAAACAATCCGCGAGCAATATGATCAAGAACTTCTTCAAGTAAT---GA--GCA----------------------------------------------------------------------------------------------------------------AGATTTAA--------TGGT---TGTTTT---CGTTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAAAAAGTT---GCTAACCCGATTTTTGCTCCCAAGAAAGC----------------------------------------GTAG-------------------------------------CATGATTTTATGAGGCTGA--------------------------------CTTTGAACAT-----------TCCGATCGATTGAATAACCA--TGTG---TTAATAAAGATATTAAGGCTCGAT---------------------------------------------------------------------------------------------------------GTGTTGCTACTGACTTCCAAAGGCTGTAGCCGCTCTTTAATTTAATGCAATGTATA-ATAGTTAGTGTTGTA--------------------ACAAAATCTAA------AATTAAATA-----TTTTC-ACTCAACCCAAA-C--GTAGATCCTTTGTGCCACCGGTGCGTGATGAGGAGAGCGAAACGCAGCGAAAGG
droYak3 3L:18624763-18625154 + AAGCCAC---------CGCCCAAACAATCCGCGAGCAATATGATCAAGAACTTCTTCAAGTAAT---GA--GAA----------------------------------------------------------------------------------------------------------------AGAATTAA--------TGGT---TGTTTC---CATTCACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAAACAGCT---GCTAACCCGATTTTTGATCCCAAGAAAGC------------GAAGT------TT------------TTTGTAG-------------------------------------CATGATT-TGTGATATTGAACTGATGTT---------------CTATTTACATTTAAACTT-----------TCCGATCGAT-GAATTAACA--TG-----CTAATTA---------GCATTGAT---------------------------------------------------------------------------------------------------------GTGTTTCCACTGGCTTTCCAATGCTGTAGCC---CGTTTATTGAATGCAGT--TTAAATAATTAATGTTAAT--------------------GCAAATGCTAA------AACTACATT------TTTT-ACTCAACCCACA-C--GTAGATCCTTTGTGCCACCGGTGCGTGATGAAGAGAGCGAAACGCAACGAAAGG
droEre2 scaffold_4784:18306136-18306539 + AAGCCAC---------CGCCCAAGCAATCCGCGAGCAATATGATCAAGAACTTCTTCAAGTAAT---GA--TAA----------------------------------------------------------------------------------------------------------------AGCATAAA--------TGGT---TGTTTT---CATTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAAACAGCA---GCTAACCCGATTATTGATCCCAAGAAAGC------------GAAGT------TT------------TTTGTAG-------------------------------------CATGATTTTGTGATATAGAACTGAGGTT---------------ACAGTTTCCTTTAAACTT-----------TCCGATCGAT-GTATTAACA--TGTG---TTAATTAAGATTAAAAGGCTCGAT---------------------------------------------------------------------------------------------------------GTGTTTCTACTGGCTTTCCAGCGCTGCAGCC---CTTTTATTTAATGCAGT--TTA-AGTGTTGGTTGTAAA--------------------ACAAATTCTAA------AACTACATT-----TTTTT-ACTCAATCCAAA-C--GCAGATCCTTTGTGCCACCGGTGCGTGATGAAGAGAGCGAAACGCAGCGAAAGG
dp5 XR_group6:1772181-1772595 - dps_2984 AAGCCAC---------CGCCCAAGCAATCCACGGGCAATATAATCAAGAATTTCTTCAAGTAAT---AC--GAG--AATCC--------TCACA--------------------------------------------------------------------------------------------AGAATAAC--------TGTTTTGTGTGTT---CGTTGA-G--TTG-AGCCTAACCTCAAAAGATAGCCCTGCTGCTAAGCAAGATGGCTTTCGTCTTTCGTTAACCTCAAATGAAAGCTCTGCTAACCTCAAAAATATCTGTCACTGCCGTTAAGTGACGTCTAACCTCAAAAGCCAGC-GCTGCTAACGCC--------------------T------TTCCCCTTGA------TT------------TGTGCAG-------------------------------------CATGAT--------------------------------------------------------TTGTTCT--TT-----------------------------CAGCTA---------GC------------------------------------------------------------------------------------------------------------------------------------------------------AT--------ATGTTCT-ATAATTTATT------------------ACTTG--AGGAATTCCAAATTATAGCATCTCTCTCACTCTT-TC-T-CTCTCCTGCCA--TTAGATCTTTTGTACCGCCCGTGCGTGACGAAGAGAGCGAAACACAGCGCAAAG
droWil2 scf2_1100000004837:851868-851948 + AAACCGC---------CGCCGAAACAATCAGCGGGCAATATATTCAAAAACTTTTTCAAGTAAA---GA--CAC---------------A----------------------------------------------------------------------------------------------GC-AAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---AAAAATGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:9244687-9245013 + dvi_19127 CAACCAA---------AACCCAAGCAATCGGCGGGCAATATATTCAAGAACTTTTTCAAGTAATCATGA--TTGTGAATCGTAATTGT-T----AATTGGCTAAC-------TGTTGTTATGCGCTAACCCGAA--GGCCGTTAAAA-CTGTGCTAGTTGCTAACACTCCACAGCTCCGCCTAAGA-AAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---AAGACGCCT-------------------------------------TTA---TT--------TTATTATATAGCATGTGCCGT--GCTCTCTCTTTGTTCTTTTG--------------------------------------------------------------------TGCTCC--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA-----------------------TGTTGAA--------------------ATT-TGACTA-AT----------AAG-----TATCC-ATCTACCCCATC-T--TTAGATCCTTTGTGCCGCCAGTGCGCGACGAGGAGAGCGAAACGCAGCGCAAGG
droMoj3 scaffold_6680:6103590-6103900 - AAA---------------CCCAAGCAATCGGCTGGCAATATATTCAAGAACTTTTTCAAGTAAT---GT--TCATGAAGCATAACTGT-T----AATTGGTTAACA----ACTGTTGTATTGCGCTAACCCGAA-AAGCCGTTTAAATCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAGC--TCT---GCTAACTCAATT-CTGCCCCGCCCAAAAC------------G--------------------------TGTAGCATGTGCCGC--------------------------------------------GAGCTGAGAATCTCATTTTTCGTTGA------------------TGTGTCCTTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------ATTAGAAATT-TAACTA-ATCAATGCGTATATC-----TTTTC-TCTC------CA-T--GTAGATCCTTTGTGCCGCCTGTGCGTGACGAGGAAAGCGAAACTCAACGCAAGG
droGri2 scaffold_15110:5015359-5015656 + AAA--------------GCCCAAGCAATCGGCGACCAATATATTCAAGAACTTTTTCAAGTAAT---AA--TGT---------------T----AACTGGTTAACTGTTGACAGTTGTTTTGCGCTAACCCCAACAAGCCGTTCAAA-CCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCAGCT---GCTAACACT--------------------TGACAGC-------------AAC--TCTGGT------TGCTAAGCATGTGCCAATAACTCTCTCTCTCTTGTTATGTTTATGTTGA--------------------------------------------------------TATGCCCT--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGTTGTTCTATGTA-CTAATTA-------------------------------------------------------------TGC-TTTCGATTCCTT-T--GTAGATCCTTTGTGCCGCCAGTGCGTGATGAGGAGAGCGAAACGCAGCGCAAGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AAGCCGC---------CGCCCAAGCAGTCGGCCGGCAATATAATCAAGAACTTCTTCAAGTAAT---AA--AAA--A-----------A-------------------------------------------------------------------------------------------------AAAGCTAATCACCAAGCTGT---TTCTTTCGCTGTTCATG--TTGAAGC-TAACCC-------------TGC------------------------------------------------------------------------------------------------TGCTAGACGGCT---GCTAATCCT--------------------TAA--GAATCCT-----T-AAAATTTTTGGCTACTTTTAAAGAGCATGTGT------------------------------------------------------------------------------------------------------------------------------------TTTTT--------------------------------------------------------GAAAGAATAACCCCAGCGATGAGCTAGGTCTTGAATGTTTTTGTTCCT---C-TTCTAAGGCTCGAAA--------------------GG------------------------------------------------ATAAAAATCTTATAA-TAT--ATAATTTC------------------TAATCCTT-TA-T-CGTCCATATCCTTGTAGATCCTTTGTGCCACCGGTACGTGACGAGGAGAGTGAAACGCAGCGCAAGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGAAA--------------------GG------------------------------------------------ATAAAAATCT......................................................................................................................2012.002000002
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGACGAGGAGAGTGAAACGC.........2211.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGAGTGAAACGCAGCGCA...2211.001100000
.......................................................................................................................................................................................................AAGCTGT---TTCTTTCGCTGTTCATG--C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
droBip1
AAGCCGC---------CGCCCAAGCAATCGGCGGGCAATATAATCAAGAACTTCTTCAAGTAAT---AA--TCC---------------TCC--AA------------------------------------------------------------------------------------------CCA------------------------------GTTAATG--TTGAAGC-TAACCC----------------------------------------------------------------------------------------------------------------TGCTAGACAGCT---GCTAACCCT--------------------TAAAAGAGTCCT-----TTAAAA--TCTGGC-----TTAAAAAGCAT-------------------------------------GAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTTTGAATGTTTTTGTTGTTATTCTTTCCAAGGCTCGAAATATTACTT------TCC----------------------T--------------------------------------------ATTAAAAATA-TTAGAT-AG-------------TAATCCT--TA-T-TATCCCTAT-CTTGTAGATCCTTTGTGCCGCCGGTACGTGACGAGGAGAGCGAAACGCAGCGTAAGGSizeHit CountTotal NormTotal
No Reads
droKik1
AAGCCGC---------CACCCAAACAATCCACGGGCAATATTATCAAGAACTTCTTCAAGTAAA---GATAGAG----------------------------------------------------------------------------------------------------------------AGATTAAA--------GTGT---TGTTTTTATCGTTGATT-GGAA-AAC-TAACCC-------------T--------------------------------------------------------------------------------------------------CGCTAGCCAGCTGATGCTAACCCC--------------------TAA--AAATCCCCTTGA------TT------------TGTGTAG-------------------------------------CATGATGCCCA------AACTTGGGGAACT---------------------CT-TAAAGAT-----------TCAAAACTAAAAAATATATA--TGTATCTTTATTTAAGAGTTTAAGGCTCAATCAGCTCTTTTTACTGCTCTGAAATGTATGTGTTCTCCTTATTGAATAACCCTTG---------------------TTTTT-----------------------------------------------------------AC-TTATTTTATT-----------------CTATTGAA--------------------ACT-TTTCTAA------AACAATTTA-----TATTT-ATGTAACAAAAT-T--TTAGATCCTTTGTGCCGCCGGTGCGAGATGAGGAAAGTGAAACGCAGCGAAAGGSizeHit CountTotal NormTotal
No Reads
droFic1
AAGCCAC---------CGCCAAAGCAATCCGCGAGCAATATGATCAAGAACTTCTTCAAGTAAT---GA--GCG----------------------------------------------------------------------------------------------------------------AGAGTTAA--------TTGT---TGTTTC---TGTTGACG--TTC-AGA-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAGCCAGCT---GCTAACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAGCCACCGCCGCCACCGCCCAAACAGTCCGCCAGCAATATGATCAAAAACTTCTTCAAGTAAT---GA--GCG----------------------------------------------------------------------------------------------------------------AGAATTAA--------TTGT---TGTTTT---CGTTGATG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAGCCAGCT---GCTAACCCGATTTCTGATCCCATAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAGCCAC---------CGCCCAAACAATCCACCAGCAATATGATCAAAAACTTCTTCAAGTAAT---GA--GAG----------------------------------------------------------------------------------------------------------------ATAATTAA--------GTGT---TGTTCT---CGTTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAGCCAGCT---GCTAACCCGATTTCTGATCCCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCCTT--------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AAGCCAC---------CGCCCAAGCAATCCGCGGGCAATATTATCAAAAACTTCTTCAAGTAAT---GA--AAG--A-----------A---AG--------------------------------------------------------------------------------------------AGAATAAG--------TTAT---TGTTTT---CGTTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCAAGCAAACT---GCTAACCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAGCCAC---------CGCCCAAACAATCCACGAGCAATATGATCAAAAACTTCTTCAAGTAAT---GA--GAA--C-----------G---AG--------------------------------------------------------------------------------------------AGAATTAA--------ATGT---TGTT-T---CATTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAGTCAGCT---GCTAATTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AAGCCGC---------CGGTCAAACAGTCCACCAGCAATATGATCAAAAACTTCTTCAAGTAAT---GA--GAG----------------------------------------------------------------------------------------------------------------ATGATTTC--------TTTTTTATGTTTT---CATTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAGCTAAAA---GCTAACCTGATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCTGC---TACTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGASizeHit CountTotal NormTotal
No Reads
dm3
AAGCCAC---------CGCCCAAACAATCCGCGAGCAATATGATCAAGAACTTCTTCAAGTAAT---GA--GCA----------------------------------------------------------------------------------------------------------------AGATTTAA--------TGGT---TGTTTT---CGTTGACGTGTTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAAAAAGCT---GCTAACTCGATTTTTGCTCCCAAGAAAGC------------GAAGT------TT------------TTTGTAG-------------------------------------CATGATTTTATGAGATTGA--------------------------------CTTTGAACTT-----------TCCGATCGATTGATTAACCGTGTGTG---TTCAAAAAGATTTTAAGGCTCGAA---------------------------------------------------------------------------------------------------------GTGTTGCTACTGCCTTCCAAACGCTCTAGCCGCTATTTAATTTGATGCAATGTTTA-ATAGTTAGTGTTGAA--------------------ACAAATTCTAA------AACTACATA-----TTTTC-ATTCAATCCAAA-CGTGTAGATCCTTTGTGCCACCGGTGCGTGATGAAGAGAGCGAAACGCAGCGGAAGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................GT---TGTTTT---CGTTGACGTGTTG-AGC-T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGAGAGCGAAACGCAGCG.....2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTGCCACCGGTGCGTGATG........................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCCACCGGTGCGTGATGAAGA....................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCCACCGGTGCGTGATGA.......................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAAGAGAGCGAAA............1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----TTTTC-ATTCAATCCAAA-CGTGT....................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGATGAAGAGAGCGAAAC...........2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAAGAGAGCGAAACGCAGCG.....2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGAAGAGAGCGAAACGCAGCGGA...2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAG-------------------------------------CATGATTTTATGAGATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCCACCGGTGCGTGATC........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCGAAACGCAGCGGAAGG2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAGATTGA--------------------------------CTTTGA....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-ATTCAATCCAAA-CGTGTA...................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAA-CGTGTAGATCCTTTGTGCCACCGG.................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGCGTGATGAAGAGAG.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................TCAAGAACTTCTTCAAGTAGC---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTGTGCCACCGGTGCGT............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAAGAGAGCGAAACGCAGCGGAA..2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGATGAAGAGAGCGAAACGCAGCGGA...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCCACCGGTGCGTGATG........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCGGTGCGTGATGAAGAGAGCGAA.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGAGAGCGAAACGCA........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAA-CGTGTAGATCCTTTGTGCCACC...................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCGGTGCGTGATGAAGAGA..................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGATGAAGAGAGCGAAACGCAGCG.....2711.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCCACCGGTGCGTGATGAAGAGAG.................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGCGTGATGAAGAGAGCG...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................TCAAGAACTTCTTCAAGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAACGCTCTAGCCGCTATTTAATT.............................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................ACGTGTTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------AT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAAGAGAGCGAAACGC.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGATGAAGAGAGCGAAACGCAGC......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAAACGCAGCGGAAGG2011.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTGCGTGATGAAGAGAGCG...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCCACCGGTGCGTGATGA.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCGGTGCGTGATGAAGAGAGCG...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................GCTAACTCGATTTTTGCTCCCAAGAAAGC------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGATGAAGAGAGCGAAA............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCCTTTGTGCCACCGGTGCGT............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGTTTA-ATAGTTAGTGT...................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTGATGAAGAGAGCGAA.............2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTGTGCCACCGGTGCGTGATGAA......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTTTAAGGCTCGAA---------------------------------------------------------------------------------------------------------GTGTTGCTA..............................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAAGAGAGCGAAACGCAGC......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGCGAAACGCAG.......1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AAACAATCCGCGAGCAATATGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTGCGTGATGAAGAGAGC................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGTGCGTGATGAAGA....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGAAGAGAGCGAAACGC.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCCACCGGTGCGTGATGAAGAGAGC................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCTAA------AACTACATA-----TTTTC-ATTCAA................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GAAGT------TT------------TTTGTAG-------------------------------------CATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCACCGGTGCGTGATGAAGAG...................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................ATCCGCGAGCAATATGATCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATA-----TTTTC-ATTCAATCCAAA-CGTGT....................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCCACCGGTGCGTGATGAAGAGG..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTTGTGCCACCGGTGCG.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTGCCACCGGTGCGTGATGAAG.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
....................................................TCTTCAAGTAAT---GA--GCA----------------------------------------------------------------------------------------------------------------AGATTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATCCTTTGTGCCACCGGTGCGT............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTGCCACCGGTGCGTGA..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTGATGAAGAGAGCG...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
droSim2
AAGCCAC---------CGCCCAAACAATCCGCGAGCAATATGATCAAGAACTTCTTCAAGTAAT---GA--GCA----------------------------------------------------------------------------------------------------------------AGATTTAA--------TGGT---TGTTTT---CGTTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAAAAAGTT---GCTAACCCGATTTTTGCTCCCAAGAAAGC------------GAAGT------TT------------TTTGTAG-------------------------------------CATGATTTTATGAGGCTGA--------------------------------CTTTGAA-AT-----------TCCGATCGATTGAATAACCA--TGTG---TTAATAAAGATTTTAAGGCTCGAT---------------------------------------------------------------------------------------------------------GTCTTGCTAATGACTTCCAAAAGCTGCAGCCGCTCTCTAATTTAATGCAATGTATA-ATAGTTAGTGTTGAA--------------------GCAAATTCTAA------AACTACATA-----TTTTC-ACTCAACCCAAA-C--GTAGATCCTTTGTGCCACCGGTGCGTGATGAAGAGAGCGAAACGCAGCGAAAGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
AAGCCAC---------CGCCCAAACAATCCGCGAGCAATATGATCAAGAACTTCTTCAAGTAAT---GA--GCA----------------------------------------------------------------------------------------------------------------AGATTTAA--------TGGT---TGTTTT---CGTTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAAAAAGTT---GCTAACCCGATTTTTGCTCCCAAGAAAGC----------------------------------------GTAG-------------------------------------CATGATTTTATGAGGCTGA--------------------------------CTTTGAACAT-----------TCCGATCGATTGAATAACCA--TGTG---TTAATAAAGATATTAAGGCTCGAT---------------------------------------------------------------------------------------------------------GTGTTGCTACTGACTTCCAAAGGCTGTAGCCGCTCTTTAATTTAATGCAATGTATA-ATAGTTAGTGTTGTA--------------------ACAAAATCTAA------AATTAAATA-----TTTTC-ACTCAACCCAAA-C--GTAGATCCTTTGTGCCACCGGTGCGTGATGAGGAGAGCGAAACGCAGCGAAAGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCGAAACGCAGCGAAAG.2111.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAATGTATA-ATAGTTAGTGTTG.................................................................................................................................2611.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGAGCGAAACGCAGCGAAAG.2411.0010010
droYak3
AAGCCAC---------CGCCCAAACAATCCGCGAGCAATATGATCAAGAACTTCTTCAAGTAAT---GA--GAA----------------------------------------------------------------------------------------------------------------AGAATTAA--------TGGT---TGTTTC---CATTCACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAAACAGCT---GCTAACCCGATTTTTGATCCCAAGAAAGC------------GAAGT------TT------------TTTGTAG-------------------------------------CATGATT-TGTGATATTGAACTGATGTT---------------CTATTTACATTTAAACTT-----------TCCGATCGAT-GAATTAACA--TG-----CTAATTA---------GCATTGAT---------------------------------------------------------------------------------------------------------GTGTTTCCACTGGCTTTCCAATGCTGTAGCC---CGTTTATTGAATGCAGT--TTAAATAATTAATGTTAAT--------------------GCAAATGCTAA------AACTACATT------TTTT-ACTCAACCCACA-C--GTAGATCCTTTGTGCCACCGGTGCGTGATGAAGAGAGCGAAACGCAACGAAAGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------TCCGATCGAT-GAATTAACA--TG-----C.......................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT-----------TCCGATCGAT-GAATTAACA--TG-----CT......................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCACCGGTGCGTGATGAAGAGA..................2520.50100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGAGAGCGAAACGCAA.......2120.50101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTAAACTT-----------TCCGATCGAT-GAATT.....................................................................................................................................................................................................................................................................................................................................................2620.50100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGATGAAGAGAGCGAAACG..........2420.50100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGATGAAGAGAGCG...............1920.50100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAAACGCAACGAAAGG2020.50100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGAGAGCGAAACGC.........1920.50100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCGGTGCGTGATGAAGAGAGC................2420.50100100000000
droEre2
AAGCCAC---------CGCCCAAGCAATCCGCGAGCAATATGATCAAGAACTTCTTCAAGTAAT---GA--TAA----------------------------------------------------------------------------------------------------------------AGCATAAA--------TGGT---TGTTTT---CATTGACG--TTG-AGC-TAACCC----------------------------------------------------------------------------------------------------------------CGCTAAACAGCA---GCTAACCCGATTATTGATCCCAAGAAAGC------------GAAGT------TT------------TTTGTAG-------------------------------------CATGATTTTGTGATATAGAACTGAGGTT---------------ACAGTTTCCTTTAAACTT-----------TCCGATCGAT-GTATTAACA--TGTG---TTAATTAAGATTAAAAGGCTCGAT---------------------------------------------------------------------------------------------------------GTGTTTCTACTGGCTTTCCAGCGCTGCAGCC---CTTTTATTTAATGCAGT--TTA-AGTGTTGGTTGTAAA--------------------ACAAATTCTAA------AACTACATT-----TTTTT-ACTCAATCCAAA-C--GCAGATCCTTTGTGCCACCGGTGCGTGATGAAGAGAGCGAAACGCAGCGAAAGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCCACCGGTGCGTGATGAAGA....................2411.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCGAAACGCAGCGAAAG.2111.0010001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--GCAGATCCTTTGTGCCACCGGTGCGT............................2711.0011000000
dp5
AAGCCAC---------CGCCCAAGCAATCCACGGGCAATATAATCAAGAATTTCTTCAAGTAAT---AC--GAG--AATCC--------TCACA--------------------------------------------------------------------------------------------AGAATAAC--------TGTTTTGTGTGTT---CGTTGA-G--TTG-AGCCTAACCTCAAAAGATAGCCCTGCTGCTAAGCAAGATGGCTTTCGTCTTTCGTTAACCTCAAATGAAAGCTCTGCTAACCTCAAAAATATCTGTCACTGCCGTTAAGTGACGTCTAACCTCAAAAGCCAGC-GCTGCTAACGCC--------------------T------TTCCCCTTGA------TT------------TGTGCAG-------------------------------------CATGAT--------------------------------------------------------TTGTTCT--TT-----------------------------CAGCTA---------GC------------------------------------------------------------------------------------------------------------------------------------------------------AT--------ATGTTCT-ATAATTTATT------------------ACTTG--AGGAATTCCAAATTATAGCATCTCTCTCACTCTT-TC-T-CTCTCCTGCCA--TTAGATCTTTTGTACCGCCCGTGCGTGACGAAGAGAGCGAAACACAGCGCAAAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTTTGTACCGCCCGTGC..............................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCCGTGCGTGACGAAGAGAGCG...............2511.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCCCGTGCGTGACGAAGAGAGC................2511.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TT-----------------------------CAGCTA---------GC------------------------------------------------------------------------------------------------------------------------------------------------------AT--------ATGGG.................................................................................................................................................1850.4020200000000
droWil2
AAACCGC---------CGCCGAAACAATCAGCGGGCAATATATTCAAAAACTTTTTCAAGTAAA---GA--CAC---------------A----------------------------------------------------------------------------------------------GC-AAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---AAAAATGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CAACCAA---------AACCCAAGCAATCGGCGGGCAATATATTCAAGAACTTTTTCAAGTAATCATGA--TTGTGAATCGTAATTGT-T----AATTGGCTAAC-------TGTTGTTATGCGCTAACCCGAA--GGCCGTTAAAA-CTGTGCTAGTTGCTAACACTCCACAGCTCCGCCTAAGA-AAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---AAGACGCCT-------------------------------------TTA---TT--------TTATTATATAGCATGTGCCGT--GCTCTCTCTTTGTTCTTTTG--------------------------------------------------------------------TGCTCC--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA-----------------------TGTTGAA--------------------ATT-TGACTA-AT----------AAG-----TATCC-ATCTACCCCATC-T--TTAGATCCTTTGTGCCGCCAGTGCGCGACGAGGAGAGCGAAACGCAGCGCAAGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGAGGAGAGCGAAAC...........1911.001000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGTGCGCGACGAGGAGAGCGAA.............2611.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGCCAGTGCGCGACGAGGAGAGC................2711.001000000000000000100000000000000000000000000000000000000000000000
....CAA---------AACCCAAGCAATCGGCGGGCAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTGTGCCGCCAGTGCGCGAC.........................2311.001000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCGAAACGCAGCGCA...1911.001000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGACGAGGAGAGCGAAAC...........2111.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
AAA---------------CCCAAGCAATCGGCTGGCAATATATTCAAGAACTTTTTCAAGTAAT---GT--TCATGAAGCATAACTGT-T----AATTGGTTAACA----ACTGTTGTATTGCGCTAACCCGAA-AAGCCGTTTAAATCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAGC--TCT---GCTAACTCAATT-CTGCCCCGCCCAAAAC------------G--------------------------TGTAGCATGTGCCGC--------------------------------------------GAGCTGAGAATCTCATTTTTCGTTGA------------------TGTGTCCTTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------ATTAGAAATT-TAACTA-ATCAATGCGTATATC-----TTTTC-TCTC------CA-T--GTAGATCCTTTGTGCCGCCTGTGCGTGACGAGGAAAGCGAAACTCAACGCAAGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTGCCGCCTGTGCGTGAC.........................2212.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTGCCGCCTGTGCGTGACGA.......................2411.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGAGGAAAGCGAAACTCAACG.....2511.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGACGAGGAAAGCGA..............1811.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCCTTTGTGCCGCCTGTGCGT............................2411.001100000
.......................................ATATTCAAGAACTTTTTCAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCCGCCTGTGCGTGACGA.......................2311.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGAGGAAAGCGAAACTCAACGC....2611.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGCGTGACGAGGAAAGCG...............2211.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCCGCCTGTGCGTGACGAG......................2411.001100000
droGri2
AAA--------------GCCCAAGCAATCGGCGACCAATATATTCAAGAACTTTTTCAAGTAAT---AA--TGT---------------T----AACTGGTTAACTGTTGACAGTTGTTTTGCGCTAACCCCAACAAGCCGTTCAAA-CCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCAGCT---GCTAACACT--------------------TGACAGC-------------AAC--TCTGGT------TGCTAAGCATGTGCCAATAACTCTCTCTCTCTTGTTATGTTTATGTTGA--------------------------------------------------------TATGCCCT--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGTTGTTCTATGTA-CTAATTA-------------------------------------------------------------TGC-TTTCGATTCCTT-T--GTAGATCCTTTGTGCCGCCAGTGCGTGATGAGGAGAGCGAAACGCAGCGCAAGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGATGAGGAGAGC................1811.00110

Generated: 05/18/2015 at 05:09 AM