dan_267

Name	Class	Family	Strand
DMCR1A	LINE	CR1	-

CGTTATATCTTTCTCCTACTCTTTCGCTTAACTATCTCGGATCTATTCCCGCGATTCGAGCTGTACGTTACGCAACAGCGTCCCTCGGTCGGTTTTACGGGGAGGTGGGCTTTACGTATGCAGTGGGAACCGCGCGAATAATAATTTTCTAATATTCAAGAAAAGAAATGTATAAAAGCAAAAGTA *********************************........(((((.((((.(((..(((((((((...((....((.((((.((..........)))))).))..))...))))..)))))..))).)))).)))))...........*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo	V055 head	M044 female body
..............................................................................................................TTTACGTATGCAGTGGGAACCGCGC...................................................	25	0	4	3.00	12	12	0	0	0
............................................................................................................GCTTTACGTATGCAGTGGGAACC.......................................................	23	0	2	2.50	5	5	0	0	0
............................................................................................................GCTTTACGTATGCAGTGGGAACCGC.....................................................	25	0	2	2.00	4	4	0	0	0
............................................................................................................GCTTTACGTATGCAGTGGGAACCGCGC...................................................	27	0	2	2.00	4	4	0	0	0
..............................................................................................................TTTACGTATGCAGTGGGAACCGC.....................................................	23	0	4	2.00	8	8	0	0	0
..............................................................................................................TTTACGTATGCAGTGGGAACCGCG....................................................	24	0	4	1.00	4	4	0	0	0
............................................................................................................GCTTTACGTATGCAGTGGGAAC........................................................	22	0	2	1.00	2	2	0	0	0
............................................................................................................GCTTTACGTACGCAGTGGGAACC.......................................................	23	1	6	0.50	3	3	0	0	0
..............................................................................................................TTTACGTACGCAGTGGGAACCGCGC...................................................	25	1	7	0.43	3	3	0	0	0
............................................................................................................GCTTTACGTACGCAGTGGGAACCGCGC...................................................	27	1	5	0.40	2	2	0	0	0
......................................................................................GGGGGGTTTTACGGGGAGG.................................................................................	19	2	3	0.33	1	0	1	0	0
......................................................................................GGTAGGTTTTACCGGCAGGT................................................................................	20	3	3	0.33	1	0	0	1	0
..............................................................................................................TTCACGTATGCAGTGGGAACCGCGC...................................................	25	1	10	0.30	3	3	0	0	0
..............................................................................................................TTTACGTATGCAGTGGGAACCG......................................................	22	0	4	0.25	1	1	0	0	0
..............................................................................................................TTTACGTATGCAGTGGGAACCGCGCGA.................................................	27	0	4	0.25	1	1	0	0	0
..............................................................................................................TTCACGTCTGCAGTGGGAACCGCGCGA.................................................	27	2	5	0.20	1	1	0	0	0
............................................................................................................GCCTTACGTATGCAGTGGGAACCGC.....................................................	25	1	5	0.20	1	1	0	0	0
............................................................................................................GCTTTACGTACGCAGTGGGAACCGC.....................................................	25	1	5	0.20	1	1	0	0	0
............................................................................................................GCTTTACGTATGCAGTGGGTAC........................................................	22	1	6	0.17	1	1	0	0	0
..............................................................................................................TTTACGTATGCAGTGGGAACCTCGC...................................................	25	1	6	0.17	1	1	0	0	0
..............................................................................................................TTTACGTATGCAGTTGGAACCGCGC...................................................	25	1	6	0.17	1	1	0	0	0
................................................................................................................TACGTATGCAGTGGGAACCGCGCG..................................................	24	0	20	0.15	3	3	0	0	0
...................................................................TTACGCACCAGCGTCCCTCGGTCG...............................................................................................	24	1	7	0.14	1	1	0	0	0
............................................................................................................TCTTTACGTATGCAGTGTTAACCGC.....................................................	25	3	7	0.14	1	0	1	0	0
............................................................................................................GCTTTACGTATGCAATGGGAACCGCGT...................................................	27	2	8	0.13	1	0	1	0	0
............................................................................................................GCTTTACGTACGCAGTGGGAAAC.......................................................	23	2	8	0.13	1	1	0	0	0
............................................................................................................GCTTTACGTATGCAGTGGGAGCCG......................................................	24	1	8	0.13	1	1	0	0	0
............................................................................................................GCTTTACGTATTCAGTGGGAACCGC.....................................................	25	1	8	0.13	1	1	0	0	0
..............................................................................................................TTTACGTATTCAGTGGGAACCGCGC...................................................	25	1	9	0.11	1	1	0	0	0
..............................................................................................................GTTACGTATGCAGTGGGAACCGC.....................................................	23	1	9	0.11	1	1	0	0	0
............................................................................................................GCTTTACGTATTCAGTGGGAAC........................................................	22	1	10	0.10	1	1	0	0	0
..............................................................................................................TTCACGTATGCAGTGGGAACCGCG....................................................	24	1	10	0.10	1	1	0	0	0
..............................................................................................................TTCACGTATGCAGTGGGAACCGC.....................................................	23	1	11	0.09	1	1	0	0	0
..............................................................................................................TTTACGTATGTAGTGGGAACCGC.....................................................	23	1	12	0.08	1	1	0	0	0
..............................................................................................................TTCACGTATGAAGTGGGAACCGCGC...................................................	25	2	12	0.08	1	1	0	0	0
............................................................................................................GGTTTACGTACGCAGTGGGAACCGC.....................................................	25	2	14	0.07	1	1	0	0	0
................................................................................................................TACGTATGCAGTGGGAACCGCGCGAAT...............................................	27	0	18	0.06	1	0	0	0	1
......................................................................................GGTGGGTTCTACAGGGAGG.................................................................................	19	3	18	0.06	1	0	0	1	0
..........................................................................ACAGCGTCTCTCGGTGGGCT............................................................................................	20	3	20	0.05	1	0	0	0	1

GCAATATAGAAAGAGGATGAGAAAGCGAATTGATAGAGCCTAGATAAGGGCGCTAAGCTCGACATGCAATGCGTTGTCGCAGGGAGCCAGCCAAAATGCCCCTCCACCCGAAATGCATACGTCACCCTTGGCGCGCTTATTATTAAAAGATTATAAGTTCTTTTCTTTACATATTTTCGTTTTCAT *********************************........(((((.((((.(((..(((((((((...((....((.((((.((..........)))))).))..))...))))..)))))..))).)))).)))))...........*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V105 male body	V039 embryo	V055 head
.............................................................ACATGCAATGCGTTGTCGCAGGGAG....................................................................................................	25	0	1	1.00	1	0	1	0	0	0
.....................................................................TGCGTTGTCGCAGGGAGCCAGCCAA............................................................................................	25	0	1	1.00	1	1	0	0	0	0
....................GAAAGCGAATTGGTAGAGCCTAGAT.............................................................................................................................................	25	1	2	0.50	1	1	0	0	0	0
...........................................................................................................CCGAAATGCATACGTCACCCTTGGCG.....................................................	26	0	2	0.50	1	1	0	0	0	0
...............................................GGGCGCTAAGCTCGACATGCAAT....................................................................................................................	23	0	5	0.20	1	0	1	0	0	0
...................ACAAAGCGAATTGGTATAGCCTAGAT.............................................................................................................................................	26	3	5	0.20	1	0	0	0	1	0
................................................................................................................................TGGCGCGCTTAGTAGTAAAC......................................	20	3	6	0.17	1	0	0	1	0	0
..................................AGAGCCTAGATAAGGGCGCTAAGCTCGA............................................................................................................................	28	0	9	0.11	1	1	0	0	0	0
..........AAGAGGATCAGAAAACGAATA...........................................................................................................................................................	21	3	9	0.11	1	0	0	1	0	0
..............GGATTAGAAAGCGAAATG..........................................................................................................................................................	18	2	10	0.10	1	0	0	1	0	0
................................................................................TGGCAGCCCGCCAAAATGC.......................................................................................	19	3	13	0.08	1	0	0	0	0	1
..AATATAGAGAGAGGACGA......................................................................................................................................................................	18	2	16	0.06	1	0	0	0	0	1
...............................................GAGCGCTAAGCTCGACATGCAAT....................................................................................................................	23	1	17	0.06	1	0	1	0	0	0
.............................................AGGGGCGCTAAGCTCGACATGCAAT....................................................................................................................	25	1	20	0.05	1	0	1	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13043:359579-359764 -	dan_267	CGTTATATCTTTCTCCT---------ACTC----T----TTC------------------GCTTAAC-TA-TCTCGGATC----TA---T-----------TCCCGCGATTCGAGCT-----GTACGTTACGCAACAGCGTCCCTCGGTCGGTTTTACGGGGAGGTGGGCTTT---ACG--------TATGCAGTGGGAA-------------------------------------------------CCGCGCGAATAATAATT---------TTCTAA---TATTCAAGA------------------------AA-AGAAATG-----TATAAAAGCAAAAGTA
droBip1	scf7180000395799:8088-8269 -		CTTGAACACTCTTCCCT---------ACAC-AACA----CTC--TCTGAA------C---TGTTCTC-TACTATTGGATC----TAT--------------CACCGCGATTCGAGCAATGCTCGATGTCATGCGGCAGGGTCCCTCGGTCGGTTGCACG-GGAGGTGGGCTGT---ACG--------TATGCAGTGGGCG-------------------------------------------------CCGCGCAACAA--AACA---------------------------AAA---------------------------ACTG-----TGGGAAAAAAAACTTA
droKik1	scf7180000300380:448-610 +		CGTTCA-----------TT-----T-CGT---------------------------C---TGTC--CTTC-TAACGCGTC----AAT-CT----------AGTTCGCGATTCGTGCG-----GTACGTCACACGGCTGCGCCCCTCGGTCGGTTGGGCG-GGAGGTGG-----------------------AAGCGGGAC------------------------------------------------CCCGCGCGAAAAAAAAAC---------GTATTC---CATT----A-------AAAA-------------CA-TGA-AAA-----CACAAAAGCACATATA
droFic1	scf7180000452637:12366-12529 +		CATTTT--------CCT---------CGCCCTTTA----TTT------------------ATTTTTC-TA-AGTCGCGAC----TCT-TT-----------TCTCGCGAACCGAGCC-----GTATGATACACGGCAGCGCCCCTCGGTCGGTTGGGCG-GAAGGTG---------------------TGGAAGTGGGAC-------------------------------------------------ACGCGAGCAAA--AAAA---------------------------TAAAAA---ATA----------AAAATAAAAA---------TATAAGGAAAAGGA
droEle1	scf7180000490380:61486-61606 -		CTCTGAATTTACATCCT---------ACTT----T-TTCTTC-----GAACTTGTATCCCTATTTTCTTA-TCAAGCGTC----AAT-CC-----------TTTCGCGAATCGTGTC-----CTACGACACACAGATGCGCCCCTCGGTCGGTTGGCCG-GGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779064:5458-5619 +		CGGACT-----------TT-----T--A----------------------------CCTATATTTTCTTA-TCTCGCGTC----TAT-CT-----------TCTCGCGAATCGTGCC-----GTACAATACACGGCTGCGCCCCTCGGTCGGTTGGGCGGGTAAGTGG----------------------GCAGTGAGAC------------------------------------------------TCCGCGCGAAAAAAAAA-----------------------------ATAAATAAAT-------------AA-AATAATA-----TAAATAATTTAAATTA
droBia1	scf7180000299712:24471-24724 -		CATTATCTTATTATCTCTAAAATCTGACTC----T-TCGCCTCCTTTAAA------A---CGTTTT------ATAATATA----CTTCTAGCACAGATTTAGATCGTACTTTTTTTT-----GTACGATAAACG---GCGTCCCTCAGTCGGTTTTGCA-GGAGGTGTGTGGAAATACTAAGGACTT-CAGC--CTGGCCTTACATTTTTCAGGAACACAAAATTAAACTTTCTGAAATTGCTACGGCTCCTCCTGAAAAAAA---------------------------------------GTCACATACA--A--------AA---------TATATATATAAGTA
droTak1	scf7180000414299:9996-10145 +		CGAACT-----------AT-----A-------------------------------TTTTTATTTTC-TA-CATCGCGTC----TAT-CA-----------TCTCGCGAATCGTGCC-----GTACGATACACGGCAGCGCCCCTCGGTCGGTTGGGCG-GGAGGTG---------------------TGGCCGTGGGAC------------------------------------------------TCCGCGCACAAA--AA---------------------------------------------AAA--AAA------AAAGTT---CTTTAAAGAAAAAAAT
droEug1	scf7180000405727:22059-22213 -		CGTATC-----------TT-----T--A----------------------------C---TAA--TC-CA--CTCGGATC----TAT--------------CCCCGTGTTCCGAGCC-----GTACGATAGACGGCAGCGCCCCTCGGTCGGTTGGGCG-GGAGGTGGGTTGC---ACG-------TCAAGCAACGGGAG-------------------------------------------------TCGCGCGAAAAAAAA-----------------------------AAAAAA---AAA----------AAAA----AA---------AAAAAATAAAAG-T
dm3	chr3L:23102439-23102608 +		CATTATATTCATTTCCT---------CGTT----T-TTGTTC------------------CCTTTTC-TA-TATCGCGTC----TAT-CT-----------TCTCGCGAATCGAGCC-----GTACGATACACGGCAGCGCCCCTCGGTCGGTTGGGCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAA--AATA---------------------------TATATAGAAAG-------------CG-AGAGT---------CATACATAAACGAA
droSim2	node_24068:1746-1928 +		CATTATATTCATTTCCT---------CGAT----T-CTGTTC------------------TCTTTTC-TA-TATCGCGTC----TAA-CT-----------TCTCGCGAATCGAGCC-----GTACGAAAAAGGGAAGCGCCCCTCGATCGGTTGGGCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAAAAAAT--------GTGTTT-------TACAAGA-------AAATA----------AA----G-AATGCGGTGAAAAAAATT--AAAAA
droSec2	scaffold_3059:683-857 +		CATTATATTCATTTTCT---------CGTT----C-CTATT---------------C---TATTTTT-TA-TATCGCGTCTA--TAT-CT-----------TCTCGCGAATCGAGCC-----GTACGATACACGGCAGCGCCCCTCGGTCGGTTGGGCG-GGTGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCCTCAT--AGTC---------------------------CTCATA---GTCAAGTAGA--AGA------TA---------TGCACGCCCAGGTA
droYak3	v2_chrUn_002:340773-340936 +		CGTTCT-----------TT-----A-------------------------------C---TGTCTTC-TA-TATCGCGTC----TAT-CT-----------TCTCGCGATTCGAGCC-----GTACGATACACGGCAGCGCCCCTCGGTCGGTTGGGCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CCGCGAAT--TAGAAGT---------TGAA-GTAAATTTCTAGA-------AAATA----------ACCATA---ATG-----T-A-A-TAAAAAATTA
droEre2	scaffold_4845:314933-315085 -		CGTTTT-----------TT-----T--G----------------------------C---TGTTCTC-TA-TATCGTCTATATCTAT-AT-----------TCACGCGATTCGAGCC-----GTACGATACATGGCAACGCCCCTCGATCGGTTGGGGA-GGAGGA---CTCG---TCG-------GGAGGCCGTGGGAC-------------------------------------------------TCGCGAGTAAA--AA---------------------------------------------AAA--AAA------TA---------TATACAATATAGTA
dp5	Unknown_singleton_1313:525-666 +		CGAATG-----------TT-----A--GTCTAATAGC----T-------------------ATC--TT---TCTTGCA-----------TGTTCGCGTTTGGTTCG-GCTACGCACC-----GCACGTCATGCGGCAGCGCCCCTCGGTCGGTTGGGCG-GGAGGAGGGCTGCGTT------------TTGC-CTGGGAT-------------------------------------------------CCGCGCGTAAC--AGCC---------------------------TTC---------------------------------------------------T
droPer2	scaffold_81:242937-243116 -		CGAATG-----------TT-----A--GTCTAATATC----T-------------------ATC--TT---TCTTGCA-----------TGCTCGCGTTTGGTTCG-GCTACGCACC-----GCGCGTCATGCGGCAGCGCCCCTCGGTCGGTTGGGCG-GGAGGAGGGCTGCGTT------------TTGC-CTGGGAT-------------------------------------------------CCGCGCGTAAC--AGCCTTCTGCTGCGTCCAA---TAT---AGA--------AAA---------AAAA------AA---------TAAAA--ACCAAAA
droWil2	scf2_1100000008080:674-850 -		AGCTATAGTATTATTTGTT-------TGT---------------------------C---TGTCTTT-TC-TATTGTGTA----TTTTTT-----------CCACGCGATTCGGGCC-----GTGCGTTATACGAGTGCACCCCTCGGTCGGTCAGGTG-GGAGGTGGGCAGTTAT------------CTGC--TTGGGC-------------------------------------------------TCGCGCGTAAC--AGGCT------TTGTCCAA---TATCCAAGA--------------------AAAT------GG---------TGGAA--AGGTATA
droVir3	scaffold_12963:12252930-12253083 +		TGTATT-----------TT-----T-TTTTTATTA-TTATTT------------------TCTT--------------------ATT-TA-----------CCTTGCATATCGTGTC-----GTACGTTACACGACTGCGCCTCTCGGTCGGTTGGGCG-GGAGGCGGGATGCAATACG---------TTGCATCAGGAT-------------------------------------------------TCGCGTTAAAA--AA---------------------------------------------AAAAAAAA------AA---------CAAAAATTATAGTA
droMoj3	scaffold_3623:346-388 -		TAAAAA-----------TC-----T---TCTAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAAGC-------------------------ATAAAAA---------T-AAATGAAATCGA
droGri2	scaffold_15116:211648-211697 +		AATCAAAATTGCCACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-----------GGCAAA-------------AA-AATATTG-----TATATCATTAATATTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CGTTATATCTTTCTCCT---------ACTC----T----TTC------------------GCTTAAC-TA-TCTCGGATC----TA---T-----------TCCCGCGATTCGAGCT-----GTACGTTACGCAACAGCGTCCCTCGGTCGGTTTTACGGGGAGGTGGGCTTT---ACG--------TATGCAGTGGGAA-------------------------------------------------CCGCGCGAATAATAATT---------TTCTAA---TATTCAAGA------------------------AA-AGAAATG-----TATAAAAGCAAAAGTA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................TTT---ACG--------TATGCAGTGGGAA-------------------------------------------------CCGCGC.............................................................................................	25	4	3.00	12	0	12	0	0	0	0
........................................................................................................................................................................GCTTT---ACG--------TATGCAGTGGGAA-------------------------------------------------CC.................................................................................................	23	2	2.50	5	0	5	0	0	0	0
........................................................................................................................................................................GCTTT---ACG--------TATGCAGTGGGAA-------------------------------------------------CCGC...............................................................................................	25	2	2.00	4	0	4	0	0	0	0
........................................................................................................................................................................GCTTT---ACG--------TATGCAGTGGGAA-------------------------------------------------CCGCGC.............................................................................................	27	2	2.00	4	0	4	0	0	0	0
..........................................................................................................................................................................TTT---ACG--------TATGCAGTGGGAA-------------------------------------------------CCGC...............................................................................................	23	4	2.00	8	0	8	0	0	0	0
..........................................................................................................................................................................TTT---ACG--------TATGCAGTGGGAA-------------------------------------------------CCGCG..............................................................................................	24	4	1.00	4	0	4	0	0	0	0
........................................................................................................................................................................GCTTT---ACG--------TATGCAGTGGGAA-------------------------------------------------C..................................................................................................	22	2	1.00	2	0	2	0	0	0	0
..........................................................................................................................................................................TTT---ACG--------TATGCAGTGGGAA-------------------------------------------------CCG................................................................................................	22	4	0.25	1	0	1	0	0	0	0
..........................................................................................................................................................................TTT---ACG--------TATGCAGTGGGAA-------------------------------------------------CCGCGCGA...........................................................................................	27	4	0.25	1	0	1	0	0	0	0
............................................................................................................................................................................T---ACG--------TATGCAGTGGGAA-------------------------------------------------CCGCGCG............................................................................................	24	20	0.15	3	0	3	0	0	0	0
............................................................................................................................................................................T---ACG--------TATGCAGTGGGAA-------------------------------------------------CCGCGCGAAT.........................................................................................	27	18	0.06	1	1	0	0	0	0	0

droBip1

CTTGAACACTCTTCCCT---------ACAC-AACA----CTC--TCTGAA------C---TGTTCTC-TACTATTGGATC----TAT--------------CACCGCGATTCGAGCAATGCTCGATGTCATGCGGCAGGGTCCCTCGGTCGGTTGCACG-GGAGGTGGGCTGT---ACG--------TATGCAGTGGGCG-------------------------------------------------CCGCGCAACAA--AACA---------------------------AAA---------------------------ACTG-----TGGGAAAAAAAACTTA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGTTCA-----------TT-----T-CGT---------------------------C---TGTC--CTTC-TAACGCGTC----AAT-CT----------AGTTCGCGATTCGTGCG-----GTACGTCACACGGCTGCGCCCCTCGGTCGGTTGGGCG-GGAGGTGG-----------------------AAGCGGGAC------------------------------------------------CCCGCGCGAAAAAAAAAC---------GTATTC---CATT----A-------AAAA-------------CA-TGA-AAA-----CACAAAAGCACATATA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CATTTT--------CCT---------CGCCCTTTA----TTT------------------ATTTTTC-TA-AGTCGCGAC----TCT-TT-----------TCTCGCGAACCGAGCC-----GTATGATACACGGCAGCGCCCCTCGGTCGGTTGGGCG-GAAGGTG---------------------TGGAAGTGGGAC-------------------------------------------------ACGCGAGCAAA--AAAA---------------------------TAAAAA---ATA----------AAAATAAAAA---------TATAAGGAAAAGGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTCTGAATTTACATCCT---------ACTT----T-TTCTTC-----GAACTTGTATCCCTATTTTCTTA-TCAAGCGTC----AAT-CC-----------TTTCGCGAATCGTGTC-----CTACGACACACAGATGCGCCCCTCGGTCGGTTGGCCG-GGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGGACT-----------TT-----T--A----------------------------CCTATATTTTCTTA-TCTCGCGTC----TAT-CT-----------TCTCGCGAATCGTGCC-----GTACAATACACGGCTGCGCCCCTCGGTCGGTTGGGCGGGTAAGTGG----------------------GCAGTGAGAC------------------------------------------------TCCGCGCGAAAAAAAAA-----------------------------ATAAATAAAT-------------AA-AATAATA-----TAAATAATTTAAATTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CATTATCTTATTATCTCTAAAATCTGACTC----T-TCGCCTCCTTTAAA------A---CGTTTT------ATAATATA----CTTCTAGCACAGATTTAGATCGTACTTTTTTTT-----GTACGATAAACG---GCGTCCCTCAGTCGGTTTTGCA-GGAGGTGTGTGGAAATACTAAGGACTT-CAGC--CTGGCCTTACATTTTTCAGGAACACAAAATTAAACTTTCTGAAATTGCTACGGCTCCTCCTGAAAAAAA---------------------------------------GTCACATACA--A--------AA---------TATATATATAAGTA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGAACT-----------AT-----A-------------------------------TTTTTATTTTC-TA-CATCGCGTC----TAT-CA-----------TCTCGCGAATCGTGCC-----GTACGATACACGGCAGCGCCCCTCGGTCGGTTGGGCG-GGAGGTG---------------------TGGCCGTGGGAC------------------------------------------------TCCGCGCACAAA--AA---------------------------------------------AAA--AAA------AAAGTT---CTTTAAAGAAAAAAAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CGTATC-----------TT-----T--A----------------------------C---TAA--TC-CA--CTCGGATC----TAT--------------CCCCGTGTTCCGAGCC-----GTACGATAGACGGCAGCGCCCCTCGGTCGGTTGGGCG-GGAGGTGGGTTGC---ACG-------TCAAGCAACGGGAG-------------------------------------------------TCGCGCGAAAAAAAA-----------------------------AAAAAA---AAA----------AAAA----AA---------AAAAAATAAAAG-T	Size	Hit Count	Total Norm	Total
No Reads

dm3

CATTATATTCATTTCCT---------CGTT----T-TTGTTC------------------CCTTTTC-TA-TATCGCGTC----TAT-CT-----------TCTCGCGAATCGAGCC-----GTACGATACACGGCAGCGCCCCTCGGTCGGTTGGGCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAA--AATA---------------------------TATATAGAAAG-------------CG-AGAGT---------CATACATAAACGAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........TCATTTCCT---------CGTT----T-TTGTTC------------------CCTTT...........................................................................................................................................................................................................................................................................................	25	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	4	4	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TCATTTCCT---------CGTT----T-TTGTTC------------------CCTT............................................................................................................................................................................................................................................................................................	24	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	5	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................C-TA-TATCGCGTC----TAT-CT-----------TCTCGCG................................................................................................................................................................................................................................................	24	14	14.07	197	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	6	1	3	0	5	0	1	0	4	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	9	9	0	3	0	5	15	9	3	1	0	6	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	10	1	7	0	13	0	0	1	3	10	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0	2	0	0	14	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	0	1	0	0	0	0	0	0	2	4	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........TCATTTCCT---------CGTT----T-TTGTTC------------------CCTTTTC-........................................................................................................................................................................................................................................................................................	27	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	3	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CGCGTC----TAT-CT-----------TCTCGCGAATCGAGC........................................................................................................................................................................................................................................	26	20	10.80	216	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	3	0	0	0	0	0	4	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	5	0	0	2	1	0	1	1	7	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	4	21	0	52	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	18	3	13	0	0	0	0	0	0	19	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	2
......................................................................................T-CT-----------TCTCGCGAATCGAGCC-----GTACGA............................................................................................................................................................................................................................	25	20	7.25	145	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	9	16	18	0	0	0	0	0	0	0	0	16	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	5	2	0	0	6	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39	0	8	11	0	0	0	0	0
........TCATTTCCT---------CGTT----T-TTGTTC------------------CCTTTT..........................................................................................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................C-TA-TATCGCGTC----TAT-CT-----------TCTCGC.................................................................................................................................................................................................................................................	23	15	6.40	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	1	3	0	0	0	3	3	1	7	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	1	0	0	1	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	1	0	0	5	3	0	9	1	1	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	5	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0
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..............................................................................................................................GATACACGGCAGCGCCCCTCGGT.......................................................................................................................................................................................................	23	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
..........................................................................................................................GTACGATACACGGCAGCGCCCCTCGG........................................................................................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TAT-CT-----------TCTCGCGAATCGAGC........................................................................................................................................................................................................................................	20	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................CTCGCGAATCGAGCC-----GTACGA............................................................................................................................................................................................................................	21	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................CGATACACGGCAGCGCCCCTCG.........................................................................................................................................................................................................	22	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................GATACACGGCAGCGCCCCTCGGTCG.....................................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................TCGCGAATCGAGCC-----GTACGATACACGGCAA..................................................................................................................................................................................................................	30	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................C-TA-TATCGCGTC----TAT-CT-----------TCTCGCGT...............................................................................................................................................................................................................................................	25	15	0.20	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TCGCGTC----TAT-CT-----------TCTCGCGAATCGAGCC-----G.................................................................................................................................................................................................................................	29	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GTC----TAT-CT-----------TCTCGCGAATCGA..........................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0

droSim2

CATTATATTCATTTCCT---------CGAT----T-CTGTTC------------------TCTTTTC-TA-TATCGCGTC----TAA-CT-----------TCTCGCGAATCGAGCC-----GTACGAAAAAGGGAAGCGCCCCTCGATCGGTTGGGCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAAAAAAT--------GTGTTT-------TACAAGA-------AAATA----------AA----G-AATGCGGTGAAAAAAATT--AAAAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................CG-GGAGGTG---------------------TGGCCGTGGGA.....................................................................................................................................................	20	20	6.95	139	0	0	0	1	0	0	0	0	0	0	0	0	0	138	0	0	0
............................................................................................................................................................GCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------...................................................................................................	22	20	5.85	117	0	0	0	0	0	0	0	1	0	0	0	0	40	76	0	0	0
....................................CTGTTC------------------TCTTTTC-TA-TATCGCGTC----........................................................................................................................................................................................................................................................................	24	14	4.21	59	0	0	0	0	0	0	4	9	43	3	0	0	0	0	0	0	0
............................................................................................................................................................GCG-GGAGGTG---------------------TGGCCGTGGGA.....................................................................................................................................................	21	20	3.15	63	0	0	0	0	0	0	0	5	0	0	0	0	58	0	0	0	0
.............................T----T-CTGTTC------------------TCTTTTC-TA-TATCGCGTC----........................................................................................................................................................................................................................................................................	26	10	2.30	23	0	0	0	0	0	0	7	3	12	1	0	0	0	0	0	0	0
..................................T-CTGTTC------------------TCTTTTC-TA-TATCGCGTC----........................................................................................................................................................................................................................................................................	25	13	2.15	28	0	0	2	0	0	0	6	5	10	4	1	0	0	0	0	0	0
.................................................................................................................................AAAGGGAAGCGCCCCTCGATCGGT...................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................AGGGAAGCGCCCCTCGATCGGTTGGG...............................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................CGAAAAAGGGAAGCGCCCCTCGATCGGT...................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................CGCGAATCGAGCC-----GTACGAAAAAGGGA....................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AGGGAAGCGCCCCTCGATCGGTTGGGC..............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................T--------GTGTTT-------TACAAGA-------AAATA----------AA----G-AATGCGG..................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................TGTTC------------------TCTTTTC-TA-TATCGCGTC----........................................................................................................................................................................................................................................................................	23	20	0.55	11	0	0	0	0	0	0	4	0	3	4	0	0	0	0	0	0	0
........................................................................................................................................AGCGCCCCTCGATCGGTTGGGCG-GGAGG.......................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TCGATCGGTTGGGCG-GGAGGTG---------------------TGG.............................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................T----T-CTGTTC------------------TCTTTTC-TA-TATCGCGT.............................................................................................................................................................................................................................................................................	25	10	0.50	5	0	0	0	0	0	0	0	3	1	0	1	0	0	0	0	0	0
.........................................................................................................................................................TGGGCG-GGAGGTG---------------------TGGCCGTGG.......................................................................................................................................................	22	20	0.45	9	0	0	0	0	0	0	0	0	0	0	8	0	1	0	0	0	0
.............................T----T-CTGTTC------------------TCTTTTC-TA-TATCGCG..............................................................................................................................................................................................................................................................................	24	10	0.40	4	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0
..................................T-CTGTTC------------------TCTTTTC-TA-TATCGCGT.............................................................................................................................................................................................................................................................................	24	13	0.38	5	0	0	0	0	0	0	0	0	1	1	3	0	0	0	0	0	0
...........................................................................................................................................................GGCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------...................................................................................................	23	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0
.....................................................................................................................................................................TG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAAA.......................................................................................	26	20	0.35	7	0	0	0	0	0	0	2	1	4	0	0	0	0	0	0	0	0
.......................................................................................................TCGCGAATCGAGCC-----GTACGAAAAA........................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................TCGAGCC-----GTACGAAAAAGG......................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................TAA-CT-----------TCTCGCGAATCGAGCC-----GT................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................C----TAA-CT-----------TCTCGCGAATCGAGCC-----GT................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................CGCGTC----TAA-CT-----------TCTCGCGAATCGAGC........................................................................................................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................GCGTC----TAA-CT-----------TCTCGCGAATCGAGCC-----G.................................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................T----T-CTGTTC------------------TCTTTTC-TA-TATCGC...............................................................................................................................................................................................................................................................................	23	10	0.30	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
........................................................................................CT-----------TCTCGCGAATCGAGCC-----..................................................................................................................................................................................................................................	18	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.............TCCT---------CGAT----T-CTGTTC------------------TCTTTTC-TA-.....................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................T---------CGAT----T-CTGTTC------------------TCTTTTC-TA-TATCGCGT.............................................................................................................................................................................................................................................................................	29	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............TCCT---------CGAT----T-CTGTTC------------------TCTTTTC-TA-TA...................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................CTGTTC------------------TCTTTTC-TA-TATCGCGTT----........................................................................................................................................................................................................................................................................	24	15	0.20	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
.............................T----T-CTGTTC------------------TCTTTTC-TA-TATCG................................................................................................................................................................................................................................................................................	22	11	0.18	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
..................................T-CTGTTC------------------TCTTTTC-TA-TATCGCGTC----TA......................................................................................................................................................................................................................................................................	27	13	0.15	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAAA.......................................................................................	24	20	0.15	3	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGTG---------------------TG..............................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0
.....................................................................................................TCTCGCGAATCGAGCC-----..................................................................................................................................................................................................................................	16	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGTG---------------------TGGCCGTG........................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.....................................................................................................................................................................TG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAAAA......................................................................................	27	20	0.15	3	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0
.....................................................................................................................................................................TG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAA.........................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0
.........................................................................................................GCGAATCGAGCC-----GTA...............................................................................................................................................................................................................................	15	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.........................................................................................................................................................TGGGCG-GGAGGTG---------------------TGGCCGTGGG......................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0
.....................................................................................................................................................................TG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAA........................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................CG-GGAGGTG---------------------TGGCCGTGGG......................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
.....................................TGTTC------------------TCTTTTC-TA-TATCGCGT.............................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................TGGGCG-GGAGGTG---------------------TGGCCGTGGGA.....................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
.............................................................................................................................................................CG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------...................................................................................................	21	20	0.10	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GCG-GGAGGTG---------------------TGGCCGTGGG......................................................................................................................................................	20	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CC.................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
............................................................................................................................................................................................TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAAAAAA....................................................................................	27	20	0.10	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................T-----------TCTCGCGAATCGAGCC-----GT................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGTG---------------------TGGCCG..........................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAAAAA.....................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
.............................T----T-CTGTTC------------------TCTTTTC-TA-TATCGCGTA----........................................................................................................................................................................................................................................................................	26	10	0.10	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAA........................................................................................	23	20	0.10	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................G---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAAAAA.....................................................................................	27	20	0.10	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.......................................TTC------------------TCTTTTC-TA-TATCGCGT.............................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
.....................................TGTTC------------------TCTTTTC-TA-TATCGCG..............................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
.............................T----T-CTGTTC------------------TCTTTTC-TA-TATCGCGTT----........................................................................................................................................................................................................................................................................	26	11	0.09	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................T-CTGTTC------------------TCTTTTC-TA-TATCGCGTC----T.......................................................................................................................................................................................................................................................................	26	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................T-CTGTTC------------------TCTTTTC-TA-TATCGCGA.............................................................................................................................................................................................................................................................................	24	13	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................T-CTGTTC------------------TCTTTTC-TA-TATCGCG..............................................................................................................................................................................................................................................................................	23	13	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................CTGTTC------------------TCTTTTC-TA-TATCGCGT.............................................................................................................................................................................................................................................................................	23	14	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................CTGTTC------------------TCTTTTC-TA-TATCGCGA.............................................................................................................................................................................................................................................................................	23	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................CTGTTC------------------TCTTTTC-TA-TATCGCGTC----TA......................................................................................................................................................................................................................................................................	26	14	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAAAA......................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................GGGCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CCG................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................GTTGGGCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------...................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................TTTTC-TA-TATCGCGTC----........................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................TC------------------TCTTTTC-TA-TATCGCGT.............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................TGGGCG-GGAGGTG---------------------TGGC............................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................TGGCCGTGGGAC-------------------------------------------------CCGTGCG............................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................GTGGGAC-------------------------------------------------CCGTGCGAAAAAA......................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................AGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTG..............................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................TGTTC------------------TCTTTTC-TA-TATCGCGTA----........................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................TTGGGCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------C..................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................TC------------------TCTTTTC-TA-TATCGCGTC----........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................GCG-GGAGGTG---------------------TGGCCGTGGGAA-------------------------------------------------...................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................TTC------------------TCTTTTC-TA-TATCGCGTC----........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................G---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGA...........................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGTG---------------------TGGCCGTGGG......................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................TTGGGCG-GGAGGTG---------------------TGG.............................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAA.........................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGTG---------------------TGGCCGTGGA......................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................G---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAAAAAA....................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................T-----------TCTCGCGAATCGAGCC-----G.................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................TC------------------TCTTTTC-TA-TATCGCGTA----........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................G---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAA........................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................TGTTC------------------TCTTTTC-TA-TATCGCGTT----........................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................TG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGC.............................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................GGTG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTG..............................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................TTGGGCG-GGAGGTG---------------------TGGCCG..........................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................TGGCCGTGGGAC-------------------------------------------------CCGTGC.............................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................GAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCGAA..........................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GCCGTGGGAC-------------------------------------------------CCGTGCGAAAAAAAA....................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGTG---------------------TGGCCGTC........................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TGGCCGTGGGAC-------------------------------------------------CCGTGCGAAAAAAA.....................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................AGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTA..............................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGTG---------------------TGG.............................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................TGGGCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------...................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................GCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CA.................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

CATTATATTCATTTTCT---------CGTT----C-CTATT---------------C---TATTTTT-TA-TATCGCGTCTA--TAT-CT-----------TCTCGCGAATCGAGCC-----GTACGATACACGGCAGCGCCCCTCGGTCGGTTGGGCG-GGTGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CCGTGCCTCAT--AGTC---------------------------CTCATA---GTCAAGTAGA--AGA------TA---------TGCACGCCCAGGTA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................GTCTA--TAT-CT-----------TCTCGCGAATCGAG.........................................................................................................................................................................................................................................	24	20	1.10	22	22	0	0	0
............................................................................................................................................................GCG-GGTGGTG---------------------TGGCCGTGGGA.....................................................................................................................................................	21	1	1.00	1	0	0	0	1
.............................................................................GTCTA--TAT-CT-----------TCTCGCGAATCGA..........................................................................................................................................................................................................................................	23	20	0.40	8	7	0	0	1
....................................................................................................................C-----GTACGATACACGGCAGCGCCCCTCGGT.......................................................................................................................................................................................................	28	20	0.35	7	7	0	0	0
.............................................................................GTCTA--TAT-CT-----------TCTCGCGAATCGAGC........................................................................................................................................................................................................................................	25	20	0.35	7	0	0	7	0
................................................................................................................................TACACGGCAGCGCCCCTCGGTCGGT...................................................................................................................................................................................................	25	20	0.30	6	6	0	0	0
...........................................................................GCGTCTA--TAT-CT-----------TCTCGCGAATCGAGC........................................................................................................................................................................................................................................	27	20	0.30	6	6	0	0	0
...............................................................................CTA--TAT-CT-----------TCTCGCGAATCGAGCC-----GT................................................................................................................................................................................................................................	26	20	0.25	5	4	1	0	0
.............................................................................GTCTA--TAT-CT-----------TCTCGCGAATCGAGCC-----GT................................................................................................................................................................................................................................	28	20	0.20	4	4	0	0	0
.............................................................................GTCTA--TAT-CT-----------TCTCGCGAATCGAGCC-----..................................................................................................................................................................................................................................	26	20	0.15	3	0	0	3	0
............................................................................CGTCTA--TAT-CT-----------TCTCGCGAATCGAGC........................................................................................................................................................................................................................................	26	20	0.15	3	2	1	0	0
...........................................................................................................................TACGATACACGGCAGCGCCCCTC..........................................................................................................................................................................................................	23	20	0.15	3	3	0	0	0
......................................................................................T-CT-----------TCTCGCGAATCGAGCC-----GTACGA............................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0
....ATATTCATTTTCT---------CGTT----C-CTATT---------------C---TATT............................................................................................................................................................................................................................................................................................	28	10	0.10	1	1	0	0	0
..............................................................................TCTA--TAT-CT-----------TCTCGCGAATCGAGCC-----G.................................................................................................................................................................................................................................	26	20	0.10	2	2	0	0	0
.............................................................................................................................CGATACACGGCAGCGCCCCTCG.........................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0
.................................................................................................................................ACACGGCAGCGCCCCTCGGTCGGT...................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0
.........................................................................................................GCGAATCGAGCC-----GTACGATACACGGC....................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
..................................................................................................................................CACGGCAGCGCCCCTCGGTCGGTTG.................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0
.........................................................................................T-----------TCTCGCGAATCGAGCC-----GTACGATA..........................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
............................................................................................................AATCGAGCC-----GTACGATACACGG.....................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0
......................................................................................................................................GCAGCGCCCCTCGGTCGGTTG.................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0
............................................................................CGTCTA--TAT-CT-----------TCTCGCGAATCGAGT........................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
.............................................................................................................ATCGAGCC-----GTACGATACACGGCAGC.................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
..................................C-CTATT---------------C---TATTTTT-TA-TATCGCTAT............................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0
.............................................................................................................ATCGAGCC-----GTACGATACACG......................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1
.........................................................................................................................................................................................................................................................................C---------------------------CTCATA---GTCAAGTAGA--AGA------.........................	20	20	0.05	1	1	0	0	0
............................................................................CGTCTA--TAT-CT-----------TCTCGCGAATC............................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0
.................................................................................A--TAT-CT-----------TCTCGCGAATCGAG.........................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0
.................................................................................A--TAT-CT-----------TCTCGCGAATCGAGCC-----GT................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0
....................................................................................................................................CGGCAGCGCCCCTCGGTCGGTT..................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0
................................................................................TA--TAT-CT-----------TCTCGCGAATCGAGCC-----GC................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0

droYak3

CGTTCT-----------TT-----A-------------------------------C---TGTCTTC-TA-TATCGCGTC----TAT-CT-----------TCTCGCGATTCGAGCC-----GTACGATACACGGCAGCGCCCCTCGGTCGGTTGGGCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------CCGCGAAT--TAGAAGT---------TGAA-GTAAATTTCTAGA-------AAATA----------ACCATA---ATG-----T-A-A-TAAAAAATTA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................CGATACACGGCAGCGCCCCTCGGT.......................................................................................................................................................................................................	24	20	0.75	15	0	0	0	0	0	0	0	0	0	0	15
............................................................................................................................................................GCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------...................................................................................................	22	20	0.55	11	0	4	7	0	0	0	0	0	0	0	0
.................................................................................................................................ACACGGCAGCGCCCCTCGGTCGGTT..................................................................................................................................................................................................	25	20	0.50	10	0	0	0	0	0	0	0	0	0	0	10
.............................................................................................................................................................CG-GGAGGTG---------------------TGGCCGTGGGA.....................................................................................................................................................	20	20	0.45	9	0	9	0	0	0	0	0	0	0	0	0
.................TT-----A-------------------------------C---TGTCTTC-TA-TATCGCGTC----TAT-C...................................................................................................................................................................................................................................................................	26	20	0.45	9	0	9	0	0	0	0	0	0	0	0	0
........................................................................................................CGCGATTCGAGCC-----GTACGATACACG......................................................................................................................................................................................................................	25	20	0.35	7	0	7	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------...................................................................................................	21	20	0.30	6	0	0	6	0	0	0	0	0	0	0	0
..TTCT-----------TT-----A-------------------------------C---TGTCTTC-TA-TATCGCGTC----........................................................................................................................................................................................................................................................................	26	15	0.13	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CG-GGAGGTG---------------------TGGCCGTGGG......................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................GTACGATACACGGCAGCGCCCCTCGG........................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................CACGGCAGCGCCCCTCGGTCGGTTGG................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................TACACGGCAGCGCCCCTCGGTCGGT...................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................CGCGATTCGAGCC-----GTACGATACAC.......................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................TACACGGCAGCGCCCCTCGGTCGG....................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................CGAGCC-----GTACGATACACGGCAGCGCC..............................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GGTTGGGCG-GGAGGTG---------------------TGGC............................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................CC-----GTACGATACACGGCAGCGCCCCTCGG........................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................GTTGGGCG-GGAGGTG---------------------TGGCCGTGGGA.....................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................TCGGTCGGTTGGGCG-GGAGGT......................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................GGCG-GGAGGTG---------------------TGGCCGTGGGAC-------------------------------------------------...................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................TT-----A-------------------------------C---TGTCTTC-TA-TATCGCGTC----TAT-CT-----------.......................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................CTCGGTCGGTTGGGCG-GGAGGTG---------------------................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CGTTTT-----------TT-----T--G----------------------------C---TGTTCTC-TA-TATCGTCTATATCTAT-AT-----------TCACGCGATTCGAGCC-----GTACGATACATGGCAACGCCCCTCGATCGGTTGGGGA-GGAGGA---CTCG---TCG-------GGAGGCCGTGGGAC-------------------------------------------------TCGCGAGTAAA--AA---------------------------------------------AAA--AAA------TA---------TATACAATATAGTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dp5

CGAATG-----------TT-----A--GTCTAATAGC----T-------------------ATC--TT---TCTTGCA-----------TGTTCGCGTTTGGTTCG-GCTACGCACC-----GCACGTCATGCGGCAGCGCCCCTCGGTCGGTTGGGCG-GGAGGAGGGCTGCGTT------------TTGC-CTGGGAT-------------------------------------------------CCGCGCGTAAC--AGCC---------------------------TTC---------------------------------------------------T	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGG......................................................................................................................................................................................................................................................	22	20	43.45	869	0	755	45	0	67	0	1	1	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGT.....................................................................................................................................................................................................................................................	23	20	21.30	426	0	364	25	0	37	0	0	0	0	0
................................................................................................GTTTGGTTCG-GCTACGCACC-----GCAC..............................................................................................................................................................................................................................	24	2	9.50	19	0	19	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TGGGAT-------------------------------------------------CCGCGCGTAAC--AGCC---------------------------TT.....................................................	23	20	9.25	185	0	185	0	0	0	0	0	0	0	0
................................................................................................GTTTGGTTCG-GCTACGCACC-----GCACG.............................................................................................................................................................................................................................	25	2	6.50	13	0	12	0	0	1	0	0	0	0	0
................................................................................................GTTTGGTTCG-GCTACGCACC-----GC................................................................................................................................................................................................................................	22	20	5.70	114	0	114	0	0	0	0	0	0	0	0
...................................................................T---TCTTGCA-----------TGTTCGCGTTTGG......................................................................................................................................................................................................................................................	21	20	5.30	106	0	101	0	0	5	0	0	0	0	0
...................................................................T---TCTTGCA-----------TGTTCGCGTTTGGT.....................................................................................................................................................................................................................................................	22	20	4.85	97	0	87	0	0	10	0	0	0	0	0
................................................................................................................................................TCGGTCGGTTGGGCG-GGAGGAGGGC..................................................................................................................................................................................	25	20	4.80	96	0	0	0	0	0	0	0	0	94	2
..................................................................................................................................TGCGGCAGCGCCCCTCGGTC......................................................................................................................................................................................................	20	20	4.65	93	0	91	0	0	2	0	0	0	0	0
................................................................................................GTTTGGTTCG-GCTACGCACC-----GCA...............................................................................................................................................................................................................................	23	2	3.50	7	0	7	0	0	0	0	0	0	0	0
..................T-----A--GTCTAATAGC----T-------------------ATC--TT---TCTTG................................................................................................................................................................................................................................................................................	23	20	3.35	67	0	63	0	0	0	0	0	4	0	0
...................................................................T---TCTTGCA-----------TGTTCGCGTTTGGTT....................................................................................................................................................................................................................................................	23	20	3.30	66	0	60	2	0	4	0	0	0	0	0
.............................................................................................................TACGCACC-----GCACGTCATGCGGCAGC.................................................................................................................................................................................................................	25	2	3.00	6	0	3	3	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTTC...................................................................................................................................................................................................................................................	25	20	2.90	58	0	49	7	0	2	0	0	0	0	0
..................................................................................................TTGGTTCG-GCTACGCACC-----GCAC..............................................................................................................................................................................................................................	22	2	2.50	5	0	5	0	0	0	0	0	0	0	0
...................................................................T---TCTTGCA-----------TGTTCGCGTTTGGTTC...................................................................................................................................................................................................................................................	24	20	2.20	44	0	40	4	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTTCG-.................................................................................................................................................................................................................................................	26	20	2.05	41	0	41	0	0	0	0	0	0	0	0
...................................................................................................TGGTTCG-GCTACGCACC-----GCACG.............................................................................................................................................................................................................................	22	2	2.00	4	0	4	0	0	0	0	0	0	0	0
..................T-----A--GTCTAATAGC----T-------------------ATC--TT---TCTTGC...............................................................................................................................................................................................................................................................................	24	20	1.95	39	0	37	2	0	0	0	0	0	0	0
.....................................................................................................................................................CGGTTGGGCG-GGAGGAGGGC..................................................................................................................................................................................	20	20	1.90	38	0	0	0	0	0	0	0	3	35	0
..................................................................................................TTGGTTCG-GCTACGCACC-----G.................................................................................................................................................................................................................................	19	20	1.55	31	0	30	1	0	0	0	0	0	0	0
..................................................................................................TTGGTTCG-GCTACGCACC-----GCACG.............................................................................................................................................................................................................................	23	2	1.50	3	0	3	0	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTTCG-G................................................................................................................................................................................................................................................	27	20	1.45	29	0	25	2	0	0	0	2	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTA....................................................................................................................................................................................................................................................	24	20	1.30	26	0	22	1	0	3	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTT........................................................................................................................................................................................................................................................	20	20	1.25	25	0	25	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TGCGTT------------TTGC-CTGGGAT-------------------------------------------------CCGC...............................................................................................	21	20	1.20	24	0	22	0	1	0	1	0	0	0	0
..................................................................................................................................................................................................TGGGAT-------------------------------------------------CCGCGCGTAAC--AGC...................................................................................	20	20	1.20	24	0	24	0	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTTCG-GC...............................................................................................................................................................................................................................................	28	20	1.15	23	0	21	1	0	1	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTG.......................................................................................................................................................................................................................................................	21	20	1.15	23	0	0	0	0	18	1	2	2	0	0
.........................................................................TTGCA-----------TGTTCGCGTTTGGTTCG-G................................................................................................................................................................................................................................................	23	20	1.05	21	0	20	1	0	0	0	0	0	0	0
........................................................................................................CG-GCTACGCACC-----GCACGTCATG........................................................................................................................................................................................................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................TTTGGTTCG-GCTACGCACC-----GCA...............................................................................................................................................................................................................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................TTGGTTCG-GCTACGCACC-----GCA...............................................................................................................................................................................................................................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................GGTTCG-GCTACGCACC-----GCACG.............................................................................................................................................................................................................................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................TACGCACC-----GCACGTCATGCGGCAG..................................................................................................................................................................................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................TACGCACC-----GCACGTCATGCGGCAGCG................................................................................................................................................................................................................	26	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................TTTGGTTCG-GCTACGCACC-----GCAC..............................................................................................................................................................................................................................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGAGGGCTGC...............................................................................................................................................................................	24	20	0.90	18	0	0	0	0	0	0	0	17	0	1
.......................................................................................................................................CAGCGCCCCTCGGTCGGTTGG................................................................................................................................................................................................	21	20	0.90	18	0	14	0	0	0	0	4	0	0	0
..................................................................................................TTGGTTCG-GCTACGCACC-----GC................................................................................................................................................................................................................................	20	20	0.90	18	0	18	0	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTT....................................................................................................................................................................................................................................................	24	20	0.85	17	0	0	14	0	2	0	1	0	0	0
...................................................................................................TGGTTCG-GCTACGCACC-----GC................................................................................................................................................................................................................................	19	20	0.80	16	0	16	0	0	0	0	0	0	0	0
................................................................................................................................................TCGGTCGGTTGGGCG-GGAGGAG.....................................................................................................................................................................................	22	20	0.80	16	0	16	0	0	0	0	0	0	0	0
.............................................................................................................................................CCCTCGGTCGGTTGGGCG-GGAGGAGGGC..................................................................................................................................................................................	28	20	0.65	13	0	0	0	0	0	0	0	13	0	0
............................................................................................TCGCGTTTGGTTCG-GCTACGCAC........................................................................................................................................................................................................................................	23	20	0.60	12	0	12	0	0	0	0	0	0	0	0
............................................................................................TCGCGTTTGGTTCG-GCTACGCACC-----..................................................................................................................................................................................................................................	24	20	0.60	12	0	12	0	0	0	0	0	0	0	0
.........................................................................................TGTTCGCGTTTGGTTCG-GCTACGC..........................................................................................................................................................................................................................................	24	20	0.60	12	0	12	0	0	0	0	0	0	0	0
..................T-----A--GTCTAATAGC----T-------------------ATC--TT---TCTTGCA-----------...................................................................................................................................................................................................................................................................	25	20	0.55	11	0	8	2	0	0	0	0	1	0	0
...................................................................................................TGGTTCG-GCTACGCACC-----GCAC..............................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................TCG-GCTACGCACC-----GCACGTCA..........................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................GTTTGGTTCG-GCTACGCACC-----GCACT.............................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................TACGCACC-----GCACGTCATGCGGC....................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGAGGGCT.................................................................................................................................................................................	22	20	0.50	10	0	0	0	0	0	0	0	0	10	0
......................................................................................................TTCG-GCTACGCACC-----GCACGTA...........................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TTCG-GCTACGCACC-----GCACGTC...........................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................GGTTCG-GCTACGCACC-----GCACGTC...........................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................GTTTGGTTCG-GCTACGCACC-----GCACGC............................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................GTTTGGTTCG-GCTACGCACC-----GCACGA............................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................GTTCG-GCTACGCACC-----GCACGTC...........................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................TCG-GCTACGCACC-----GCACGTCATGCGGCA...................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................TGGTTCG-GCTACGCACC-----GCAAA.............................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................GGTTCG-GCTACGCACC-----GCACGT............................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................GTTTGGTTCG-GCTACGCACC-----GCACA.............................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................TCG-GCTACGCACC-----GCACGTCATGC.......................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................ACGCACC-----GCACGTCATGCGGCAGC.................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TCGGTCGGTTGGGCG-GGAGGA......................................................................................................................................................................................	21	20	0.45	9	0	9	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TGCGTT------------TTGC-CTGGGAT-------------------------------------------------CCGCG..............................................................................................	22	20	0.45	9	0	9	0	0	0	0	0	0	0	0
................................................................................................................................................TCGGTCGGTTGGGCG-GGAG........................................................................................................................................................................................	19	20	0.40	8	0	8	0	0	0	0	0	0	0	0
............................................................................................TCGCGTTTGGTTCG-GCTACGCA.........................................................................................................................................................................................................................................	22	20	0.40	8	0	8	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TGGGAT-------------------------------------------------CCGCGCGTAAC--AG....................................................................................	19	20	0.40	8	0	8	0	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTAAA-.................................................................................................................................................................................................................................................	26	20	0.40	8	0	8	0	0	0	0	0	0	0	0
.......................................................................TCTTGCA-----------TGTTCGCGTTTGGTTCG-G................................................................................................................................................................................................................................................	25	20	0.40	8	0	8	0	0	0	0	0	0	0	0
.......................................................................TCTTGCA-----------TGTTCGCGTTTGGTTCG-.................................................................................................................................................................................................................................................	24	20	0.40	8	0	8	0	0	0	0	0	0	0	0
.......................................................................TCTTGCA-----------TGTTCGCGTTTGGTTC...................................................................................................................................................................................................................................................	23	20	0.35	7	0	5	2	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTTA...................................................................................................................................................................................................................................................	25	20	0.35	7	0	7	0	0	0	0	0	0	0	0
.......................................................................TCTTGCA-----------TGTTCGCGTTTGGT.....................................................................................................................................................................................................................................................	21	20	0.35	7	0	7	0	0	0	0	0	0	0	0
....................................................................................................................................CGGCAGCGCCCCTCGGTCGG....................................................................................................................................................................................................	20	20	0.35	7	0	7	0	0	0	0	0	0	0	0
................................................................................................................................................TCGGTCGGTTGGGCG-GGAGGAGGG...................................................................................................................................................................................	24	20	0.35	7	0	0	0	0	0	0	0	0	7	0
.................................................................................................................CACC-----GCACGTCATGCGGCAGCGA...............................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..................T-----A--GTCTAATAGC----T-------------------ATC--TT---TCTT.................................................................................................................................................................................................................................................................................	22	20	0.30	6	0	6	0	0	0	0	0	0	0	0
...................................................................T---TCTTGCA-----------TGTTCGCGTTTGGTA....................................................................................................................................................................................................................................................	23	20	0.30	6	0	6	0	0	0	0	0	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGAGGGCTGCGT.............................................................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	6	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGAGGGCTGCG..............................................................................................................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	0	6	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGC.....................................................................................................................................................................................................................................................	23	20	0.30	6	0	0	6	0	0	0	0	0	0	0
.....................................................................................................................................................CGGTTGGGCG-GGAGGAGGGCTGC...............................................................................................................................................................................	23	20	0.25	5	0	0	0	0	0	0	0	0	5	0
.....................................................................................................................................GGCAGCGCCCCTCGGTCGG....................................................................................................................................................................................................	19	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..................................................................................................................................TGCGGCAGCGCCCCTCGGTCGGTTT.................................................................................................................................................................................................	25	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.......................................................................TCTTGCA-----------TGTTCGCGTTTGGTT....................................................................................................................................................................................................................................................	22	20	0.25	5	0	5	0	0	0	0	0	0	0	0
........................A--GTCTAATAGC----T-------------------ATC--TT---TCTTG................................................................................................................................................................................................................................................................................	22	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.......................................................................TCTTGCA-----------TGTTCGCGTTTGGTTCG-GC...............................................................................................................................................................................................................................................	26	20	0.25	5	0	5	0	0	0	0	0	0	0	0
............................................................................................................................................CCCCTCGGTCGGTTGGGCG-GGAGGAGGGC..................................................................................................................................................................................	29	20	0.25	5	0	0	0	0	0	0	0	5	0	0
................................................................................................................................................TCGGTCGGTTGGGCG-GGAGGAGGGT..................................................................................................................................................................................	25	20	0.25	5	0	0	0	0	0	0	0	5	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGAA....................................................................................................................................................................................................................................................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TGGGAT-------------------------------------------------CCGCGCGTAAC--AGCC---------------------------TTC---------------------------------------------------.	24	20	0.25	5	0	0	0	0	0	1	4	0	0	0
.............................................................................................................TACGCACC-----GCACGTCATGCGGCAGT.................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................GTCGGTTGGGCG-GGAGGA......................................................................................................................................................................................	18	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..........................................................................................GTTCGCGTTTGGTTCG-GCTACG...........................................................................................................................................................................................................................................	22	20	0.25	5	0	2	0	0	0	0	0	3	0	0
................................................................................................................................CATGCGGCAGCGCCCCTCGGTCGG....................................................................................................................................................................................................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTA........................................................................................................................................................................................................................................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GTT------------TTGC-CTGGGAT-------------------------------------------------CCGCG..............................................................................................	19	20	0.25	5	0	4	0	0	0	0	1	0	0	0
............................................................................................TCGCGTTTGGTTCG-GCTACG...........................................................................................................................................................................................................................................	20	20	0.25	5	0	0	0	0	1	0	1	1	2	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGA......................................................................................................................................................................................................................................................	22	20	0.25	5	0	4	0	0	1	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTTT...................................................................................................................................................................................................................................................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................GTTGGGCG-GGAGGAGGGCTGC...............................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.......................................................................TCTTGCA-----------TGTTCGCGTTTGG......................................................................................................................................................................................................................................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................TGTTCGCGTTTGGTTCG-GCTA.............................................................................................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................CGCGTTTGGTTCG-GCTACGC..........................................................................................................................................................................................................................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
................................................................................................GTTTGGTTCG-GCTACGCA.........................................................................................................................................................................................................................................	18	20	0.20	4	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGA......................................................................................................................................................................................	17	20	0.20	4	0	0	0	0	0	0	0	4	0	0
..................T-----A--GTCTAATAGC----T-------------------ATC--TT---TCT..................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.................................................................................................TTTGGTTCG-GCTACGCACC-----G.................................................................................................................................................................................................................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................GCAGCGCCCCTCGGTCGGTTG.................................................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................GCGGCAGCGCCCCTCGGTCGGTTGG................................................................................................................................................................................................	25	20	0.20	4	0	3	1	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTTCA-.................................................................................................................................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................CCTCGGTCGGTTGGGCG-GGA.........................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..........................................................................TGCA-----------TGTTCGCGTTTGGTTCG-GC...............................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTC....................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	3	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTAA...................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	3	0	0	0	0	0	0	0
........................................................................CTTGCA-----------TGTTCGCGTTTGGTT....................................................................................................................................................................................................................................................	21	20	0.15	3	0	1	0	0	0	0	2	0	0	0
...................................................................................................................................................................................................GGGAT-------------------------------------------------CCGCGCGTAAC--AGCC---------------------------.......................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
........................A--GTCTAATAGC----T-------------------ATC--TT---TCTTGC...............................................................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................TTGGGCG-GGAGGAGGGC..................................................................................................................................................................................	17	20	0.15	3	0	0	0	0	0	0	0	0	0	3
...............................................................................................................................TCATGCGGCAGCGCCCCTCG.........................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..................T-----A--GTCTAATAGC----T-------------------ATC--TT---TCTTGCA-----------TG.................................................................................................................................................................................................................................................................	27	20	0.15	3	0	2	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GAT-------------------------------------------------CCGCGCGTAAC--AGCC---------------------------TT.....................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................CATGCGGCAGCGCCCCTCGGT.......................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................CGGTCGGTTGGGCG-GGAGGA......................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGAGGGCTG................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	3
...............................................................................................................................................CTCGGTCGGTTGGGCG-GGA.........................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	1	2	0	0	0	0
........................................................................................................................................AGCGCCCCTCGGTCGGTTGG................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................TGTTCGCGTTTGGTTCG-GCT..............................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................CCCTCGGTCGGTTGGGCG-GGAGGAGGG...................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	2	1	0
........................................................................................................................................................TTGGGCG-GGAGGAGGG...................................................................................................................................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................................................TTGC-CTGGGAT-------------------------------------------------CCGCGCGTAAC--......................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	2	0	0
...................................................................T---TCTTGCA-----------TGTTCGCGTTTGGAA....................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................T---TCTTGCA-----------TGTTCGCGTTTGGC.....................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0	0	0	0	0	0
.........................................................................TTGCA-----------TGTTCGCGTTTGGTTC...................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0
......................................................................................................................................................................................................AT-------------------------------------------------CCGCGCGTAAC--AGCC---------------------------TTC---------------------------------------------------T	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................CGGTTGGGCG-GGAGGAGGG...................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	2	0
...................................................................T---TCTTGCA-----------TGTTCGCGTTTGGTTCG-.................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	1	0	0	1	0	0
........................................................................CTTGCA-----------TGTTCGCGTTTGGTTC...................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................TGTTCGCGTTTGGTTCG-GCTACGT..........................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................CTTGCA-----------TGTTCGCGTTTGG......................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................TGCGGCAGCGCCCCTCGGTCGGTTGGG...............................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................T-------------------ATC--TT---TCTTGCA-----------TGTTCGCG...........................................................................................................................................................................................................................................................	21	20	0.10	2	0	1	0	0	0	1	0	0	0	0
..................................................................................................................................................................AGGAGGGCTGCGTT------------TTGC-CTG........................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................TGTTCGCGTTTGGTTCG-GC...............................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................TTGGGCG-GGAGGAGGGCT.................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	2	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGAGGGT..................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	2	0	0
..................................................................................................................................TGCGGCAGCGCCCCTCGGTCGGTTGGGCG-G...........................................................................................................................................................................................	30	20	0.10	2	0	0	0	0	0	0	2	0	0	0
.........................................................................................TGTTCGCGTTTGGTTCG-GCTACAA..........................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................CCTCGGTCGGTTGGGCG-GG..........................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGAGGGA..................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	2	0	0
............................................................................................................................................................................CGTT------------TTGC-CTGGGAT-------------------------------------------------CCGCG..............................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..................................................................................................................................TGCGGCAGCGCCCCTCGGTCGG....................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0
...................................................................................................................................................................................................GGGAT-------------------------------------------------CCGCGCGTAAC--AGCC---------------------------TTC---------------------------------------------------.	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................GCA-----------TGTTCGCGTTTGGTTCG-.................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	2	0	0	0
..............................................................TC--TT---TCTTGCA-----------TGTTCGCGTTTG.......................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................TCTTGCA-----------TGTTCGCGTTTGGTAA...................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................GAGGAGGGCTGCGTT------------TTGC-...........................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................GCCCCTCGGTCGGTTGGGC..............................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................T---TCTTGCA-----------TGTTCGCGTTTGGTTCG-GC...............................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	2	0	0	0	0	0
....................................................................................................................................................TCGGTTGGGCG-GGAGGAG.....................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	2	0
...........................................................................................................................................GCCCCTCGGTCGGTTGGGCG-GGAGGAGG....................................................................................................................................................................................	28	20	0.10	2	0	1	0	0	0	0	1	0	0	0
..........................................................................................................................................................................TGCGTT------------TTGC-CTGGGAT-------------------------------------------------CCGCGA.............................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................TAATAGC----T-------------------ATC--TT---TCTTGCA-----------...................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................CGGTCGGTTGGGCG-GGAGGAGGGCT.................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	2	0	0
................................................................................................................................CATGCGGCAGCGCCCCTCG.........................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................CGGTTGGGCG-GGAGGAGGGCTG................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	2	0	0
..........................................................................................GTTCGCGTTTGGTTCG-GCTACGCAC........................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................TTCGCGTTTGGTTCG-GCTACGC..........................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................TTGCA-----------TGTTCGCGTTTGG......................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GGGAT-------------------------------------------------CCGCGCGTAAC--AGCC---------------------------TTC---------------------------------------------------T	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................CGGCAGCGCCCCTCGGTCGGTTGG................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................GCA-----------TGTTCGCGTTTGGTTCG-GC...............................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................CGGTTGGGCG-GGAGGAGGGCTGCGT.............................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0
............................................................................CA-----------TGTTCGCGTTTGGTTCG-GC...............................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................GCA-----------TGTTCGCGTTTGGTTCG-G................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................CTGCGTT------------TTGC-CTGGGAT-------------------------------------------------CCG................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................GGTCGGTTGGGCG-GGAGGA......................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTTG...................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................CCCTCGGTCGGTTGGGCG-GGA.........................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................CGCGTTTGGTTCG-GCTACA...........................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................AGGGCTGCGTT------------TTGC-CTGG.......................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................GGTTGGGCG-GGAGGAGGGCTGC...............................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................A-----------TGTTCGCGTTTGGTTCG-GC...............................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................GGCAGCGCCCCTCGGTCG.....................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................TCTTGCA-----------TGTTCGCGTTTG.......................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................TTCGCGTTTGGTTCG-GCTACGCACC-----..................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................GGGCTGCGTT------------TTGC-CTGGGA.....................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................CCCTCGGTCGGTTGGGCG-GGAG........................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...ATG-----------TT-----A--GTCTAATAGC----T-------------------ATC--..........................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................TCGCGTTTGGTTCG-GCTAC............................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................TGGGAT-------------------------------------------------CCGCGCGTAAC--AGCC---------------------------T......................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................CGGCAGCGCCCCTCGGTCG.....................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTTAA-.................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................TAATAGC----T-------------------ATC--TT---TCTTGCA-----------TGTTCGCG...........................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................TGTTCGCGTTTGGTTCG-GA...............................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGC-CTGGGAT-------------------------------------------------CCGCGCGTAAC--AGC...................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............................................................C--TT---TCTTGCA-----------TGTTCGCGTTTGGTTCG-G................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GCGTT------------TTGC-CTGGGAT-------------------------------------------------CCG................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	1	0	0
............................................................................................................................................CCCCTCGGTCGGTTGGGCG-GGAGGAGG....................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................T------------TTGC-CTGGGAT-------------------------------------------------CCGCGCGT...........................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................TGGGCG-GGAGGAGGGC..................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...................................................................T---TCTTGCA-----------TGTTCGCGTTTGGTAAC-.................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................CATGCGGCAGCGCCCCTCGGTCGGTA..................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................TAGC----T-------------------ATC--TT---TCTTGCA-----------TGTTCGC............................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTGGTTCG-T................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................T---TCTTGCA-----------TGTTCGCGTTTGGG.....................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................T-----A--GTCTAATAGC----T-------------------ATC--TT---TCTTGCA-----------TGT................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................TGTTCGCGTTTGGTTCG-GCTACGCAC........................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................TC--TT---TCTTGCA-----------TGTTCGCGT..........................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..............................................................TC--TT---TCTTGCA-----------TGTTCGCGTTTGGT.....................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................CTCGGTCGGTTGGGCG-G...........................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...........................................................................GCA-----------TGTTCGCGTTTGGTT....................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................GTTTGGTTCG-GCTACGCAC........................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................TGTTCGCGTTTGGTTCG-G................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................GTTCGCGTTTGGTTCG-GCTAC............................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................C-CTGGGAT-------------------------------------------------CCGCGCGTAA.........................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................GCGTTTGGTTCG-GCTACGCACC-----G.................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................CATGCGGCAGCGCCCCTCGGTCGGTTG.................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................TTCGCGTTTGGTTCG-GCTACGCA.........................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................GGAGGAGGGCTGCGTT------------TTGC-...........................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...................................................................T---TCTTGCA-----------TGTTCGCGTTTAAA.....................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................TGCGGCAGCGCCCCTCGGTCGGTTGG................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................TTCGCGTTTGGTTCG-GCTACG...........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.......................................................................TCTTGCA-----------TGTTCGCGTTTGGTTCG-GT...............................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................GCA-----------TGTTCGCGTTTGGTTCG-GCTACG...........................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................TT---TCTTGCA-----------TGTTCGCGTTTT.......................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

CGAATG-----------TT-----A--GTCTAATATC----T-------------------ATC--TT---TCTTGCA-----------TGCTCGCGTTTGGTTCG-GCTACGCACC-----GCGCGTCATGCGGCAGCGCCCCTCGGTCGGTTGGGCG-GGAGGAGGGCTGCGTT------------TTGC-CTGGGAT-------------------------------------------------CCGCGCGTAAC--AGCCTTCTGCTGCGTCCAA---TAT---AGA--------AAA---------AAAA------AA---------TAAAA--ACCAAAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................TTTGGTTCG-GCTACGCACC-----GCG...............................................................................................................................................................................................................................	22	20	3.25	65	0	65	0	0	0	0
..................................................................................................................................TGCGGCAGCGCCCCTCGGTCGG....................................................................................................................................................................................................	22	20	2.10	42	0	42	0	0	0	0
...................................TC----T-------------------ATC--TT---TCTTGCA-----------TGCTCGCG...........................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................................................GTT------------TTGC-CTGGGAT-------------------------------------------------CCGCGCGTAAC--......................................................................................	25	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................................GGTTGGGCG-GGAGGAGGGCTG................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.........................................................................................TGCTCGCGTTTGGTTCG-GCTT.............................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.................................................................................................TTTGGTTCG-GCTACGCACC-----GCGC..............................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................................................AGGGCTGCGTT------------TTGC-CTGGGA.....................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droWil2

AGCTATAGTATTATTTGTT-------TGT---------------------------C---TGTCTTT-TC-TATTGTGTA----TTTTTT-----------CCACGCGATTCGGGCC-----GTGCGTTATACGAGTGCACCCCTCGGTCGGTCAGGTG-GGAGGTGGGCAGTTAT------------CTGC--TTGGGC-------------------------------------------------TCGCGCGTAAC--AGGCT------TTGTCCAA---TATCCAAGA--------------------AAAT------GG---------TGGAA--AGGTATA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................C-------------------------------------------------TCGCGCGTAAC--AGGCT------TTGTCCAA---................................................................	25	2	0.50	1	0	1	0	0	0
........TATTATTTGTT-------TGT---------------------------C---TGTC............................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................TGGGCAGTTAT------------CTGC--TTGGGC-------------------------------------------------TCGCGCG............................................................................................	28	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................GGCAGTTAT------------CTGC--TTGGGC-------------------------------------------------...................................................................................................	19	20	0.05	1	1	0	0	0	0
........................................................................................................................................................................GCAGTTAT------------CTGC--TTGGGC-------------------------------------------------TCGCGC.............................................................................................	24	20	0.05	1	0	0	1	0	0

droVir3

TGTATT-----------TT-----T-TTTTTATTA-TTATTT------------------TCTT--------------------ATT-TA-----------CCTTGCATATCGTGTC-----GTACGTTACACGACTGCGCCTCTCGGTCGGTTGGGCG-GGAGGCGGGATGCAATACG---------TTGCATCAGGAT-------------------------------------------------TCGCGTTAAAA--AA---------------------------------------------AAAAAAAA------AA---------CAAAAATTATAGTA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................TACACGACTGCGCCTCTCGGTCGGT...................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CTGCGCCTCTCGGTCGGTTGGGCG-GGA.........................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TAAAAA-----------TC-----T---TCTAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAAGC-------------------------ATAAAAA---------T-AAATGAAATCGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

AATCAAAATTGCCACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-----------GGCAAA-------------AA-AATATTG-----TATATCATTAATATTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_267

scaffold_13043:359629-359714 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-36.8	-36.8	-36.7