ID:

dan_2656

 Coordinate:

scaffold_13337:15484738-15484888 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dana\GF10597-cds]; exon [dana_GLEANR_10551:8]; intron [Dana\GF10597-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_6925:5291-5308 +
  2. scaffold_12916:11181972-11181989 +
  3. scaffold_12929:1298871-1298888 +
  4. scaffold_13117:3765420-3765437 +
  5. scaffold_13248:241164-241181 +
  6. scaffold_13248:379036-379053 +
  7. scaffold_13248:2111824-2111841 +
  8. scaffold_13250:2322814-2322831 +
  9. scaffold_13266:2731610-2731627 +
  10. scaffold_13334:45548-45565 +
  11. scaffold_13335:113926-113943 +
  12. scaffold_13337:12857758-12857775 +
  13. scaffold_13337:15133580-15133597 +
  14. dan_2656  scaffold_13337:15484763-15484780 +
  15. scaffold_13337:15587422-15587439 +
  16. scaffold_13337:16307658-16307675 +
  17. scaffold_13337:20771126-20771143 +
  18. scaffold_13340:9190202-9190219 +
  19. scaffold_13340:14477151-14477168 +
  20. scaffold_13417:2916825-2916842 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATAAACACACACATATACATACACAAACACACACACACATACACTGGTCGAAAATGTTGTGTCAAATCGTTGCAAAAAAAAAAAAACACAAAAAATTAAAAAAAAAAAAACGATCACCAAACAAATACGACCGACTCTCGTTGTTAACTTTTGTGTTTCGGTGCACTCACCTCCGGCTCCGGATATATATATTTCTGTAGCCGCCGTTGCCGCCGCCATGCGTGGAGTGGCCATCCAGCGCGGACACGTG
***************************************************************************............................................************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V039
embryo
 V055
head
 V105
male body
...................................................................................................................................................................................................................................GTGGCCATCCAGCGCTGACA.... 20 1 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................................TATTTCTGTAGCCGCCGTTGC........................................ 21 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................TGGCCATCCAGCGCGGACAC... 20 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................AAAAAAAAAACACGATCACC.................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AAAAGAAAAACGATCACC.................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................AAAAAAAAACGCTCACCAAA................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................AAAAAAAAAAAACGATCACC.................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.............................ACACACACACATACACTGGTC......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................AAAAAAAAACGATCACCCA.................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................ACAAAAAAAAACGATCACC.................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AAAGACAAAACGATCACCAAA................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AAAAAAAAAACGATCACC.................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................AAAGAAAAACAACGATCACC.................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................AGAAAAAAAACACGATCACCA................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................ATAAAAAAAACGATCACCAC.................................................................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................AAAAAGAAAAAAAAGATCACCAACCA............................................................................................................................... 26 3 2 0.50 1 1 0 0 0 0 0
...................................................................................................AAAAAAAAAATCCGATCACCA................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................AAAACAACAAAGACGATCACCAAA................................................................................................................................. 24 3 2 0.50 1 1 0 0 0 0 0
...................................................................................................TAAAAAAAGAAACGATCACC.................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0
...........................................................................AAAAAAAAAAAACACAAAAAAT.......................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0
..................................................................................................AAAAAAAAAAGAACGAGCACCA................................................................................................................................... 22 2 3 0.33 1 0 0 0 1 0 0
......................................................................................................AAAAGAAAACGATCACCACCCA............................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
..................................................................................................AAAAAAAAAAAAACGCTCACC.................................................................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0
.....................................................................................................AAAAAAAAAACGACCACAAAACAAA............................................................................................................................. 25 2 3 0.33 1 1 0 0 0 0 0
...................................................................................................AAAAAAGAACAACGATCACC.................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0
..........................................................................AAAAACAAAAAAACACAAAAAAATAAAAAAAAAAAA............................................................................................................................................. 36 2 3 0.33 1 0 0 0 0 1 0
....................................................................................................AAAAAAAAAAACGAGCACC.................................................................................................................................... 19 1 3 0.33 1 1 0 0 0 0 0
..................................................................................................AAAGCAAAAAAAACGATCACCCA.................................................................................................................................. 23 3 4 0.25 1 1 0 0 0 0 0
..................................................................................................AAAAAAGAAAAAACGCTCACC.................................................................................................................................... 21 2 4 0.25 1 1 0 0 0 0 0
.................ACATACACAAACACACACACAC.................................................................................................................................................................................................................... 22 0 4 0.25 1 1 0 0 0 0 0
...................................................................................................AGAAAAAAAACACGATCACC.................................................................................................................................... 20 2 4 0.25 1 1 0 0 0 0 0
...................................................................................................AAAAAAACAAAAGGAGCACCAAAC................................................................................................................................ 24 3 4 0.25 1 1 0 0 0 0 0
..................................................................................................AAAAAAAAAAAAAAGATCACC.................................................................................................................................... 21 1 5 0.20 1 1 0 0 0 0 0
..................................................................................................AAAAAAAAAAAAAGGATCACC.................................................................................................................................... 21 1 5 0.20 1 1 0 0 0 0 0
......................................................................................................AAAAGAAAACGGGCACCAAACA............................................................................................................................... 22 3 5 0.20 1 0 0 0 1 0 0
...............................................................................................................................................................................................................................TGGACTGGCCACCCAGCGC......... 19 2 5 0.20 1 0 1 0 0 0 0
....................................................................................................AAGAAAAATAACGATCACC.................................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0
.....................................................................................................AAAAGAACAACGATCACCA................................................................................................................................... 19 2 6 0.17 1 1 0 0 0 0 0
...................................................................................................AAAAGAAAAACACGATCACC.................................................................................................................................... 20 2 6 0.17 1 1 0 0 0 0 0
.......................................................................................................AAAAAAAACGAACACCCAACA............................................................................................................................... 21 2 7 0.14 1 1 0 0 0 0 0
.....................................................................................................AAAAAAAGAACGGTCACCA................................................................................................................................... 19 2 7 0.14 1 1 0 0 0 0 0
...................................................................................................AAAAAAAAAAAACGAACACC.................................................................................................................................... 20 1 15 0.13 2 2 0 0 0 0 0
....................................................................................................AGAAAAAAAAAGGATCACCA................................................................................................................................... 20 2 8 0.13 1 1 0 0 0 0 0
.......................................................................................................AAAAAAAACGATCACCACC................................................................................................................................. 19 2 8 0.13 1 1 0 0 0 0 0
..........................................................................................................AAACACGATCACCACACA............................................................................................................................... 18 2 8 0.13 1 1 0 0 0 0 0
.................................................................................................TAAAAAGAAGAAAACCATCACC.................................................................................................................................... 22 3 8 0.13 1 1 0 0 0 0 0
....................................................................................................AAAAAAAAACACGGTCACC.................................................................................................................................... 19 2 8 0.13 1 1 0 0 0 0 0
.....................................................................................................AAAAAACAAAAGATCACCACAC................................................................................................................................ 22 3 8 0.13 1 1 0 0 0 0 0
...................................................................................................AGAACAAAAAACCGATCACCA................................................................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0
....................................................................................................AAAAACAAAAACGGTCACCA................................................................................................................................... 20 2 9 0.11 1 1 0 0 0 0 0
.....................................................................................................AAAAAAAAAAGGATCACC.................................................................................................................................... 18 1 10 0.10 1 1 0 0 0 0 0
..................................................................................................AAAAAAAAAACAAGGATCACC.................................................................................................................................... 21 2 10 0.10 1 1 0 0 0 0 0
.....................................................................................................AAGTAAAAAACGATCACC.................................................................................................................................... 18 2 11 0.09 1 1 0 0 0 0 0
....................................................................................................AAAAAAAAAAACGCTCGCCA................................................................................................................................... 20 2 11 0.09 1 1 0 0 0 0 0
...............................................................................................................................................................................................ATTTCTGTGGCCTCCGATGCC....................................... 21 3 11 0.09 1 1 0 0 0 0 0
..................................................................................................AAAAAATACAAAACGCTCACCA................................................................................................................................... 22 3 12 0.08 1 1 0 0 0 0 0
....................................................................................................AAAAAAAAAAACGACCAC..................................................................................................................................... 18 1 12 0.08 1 1 0 0 0 0 0
..................................................................................AAAAACACAAAAAATCAAAAAAAACA............................................................................................................................................... 26 2 12 0.08 1 1 0 0 0 0 0
.....................................................................................................GAAAAAAAACCGATCACC.................................................................................................................................... 18 2 12 0.08 1 1 0 0 0 0 0
............................................CTGGTCGTAAAGGTCGTGT............................................................................................................................................................................................ 19 3 12 0.08 1 0 0 0 0 0 1
.................................................................................................AAAATAGAAAAAAACGATCACC.................................................................................................................................... 22 3 13 0.08 1 1 0 0 0 0 0
...................................................................................................GGAAAAAAAAACCGATCACCA................................................................................................................................... 21 3 14 0.07 1 1 0 0 0 0 0
.....................................................................................................AAAAAAAAAACCAGCACCAAAGAA.............................................................................................................................. 24 3 14 0.07 1 1 0 0 0 0 0
...................................................................................................AAAGAAAAGATACGATCACCA................................................................................................................................... 21 3 16 0.06 1 1 0 0 0 0 0
..................................................................................................AAAAAAAAAAGAACGAACACC.................................................................................................................................... 21 2 17 0.06 1 1 0 0 0 0 0
..................................................................................................AAAAACGAGAAAACGATCACC.................................................................................................................................... 21 3 18 0.06 1 1 0 0 0 0 0
...................................................................................................AAAAAAACAAAAAGATCACCA................................................................................................................................... 21 2 18 0.06 1 1 0 0 0 0 0
...................................................................................................AGAAACAAAAGACGATCACC.................................................................................................................................... 20 3 19 0.05 1 1 0 0 0 0 0
....................................................................................................AAAAAAAAGAACCATCACCA................................................................................................................................... 20 2 19 0.05 1 1 0 0 0 0 0
..........................................................................AAAAAAAAAAAAACACAAAAAACAAAAAAAAAAAA.............................................................................................................................................. 35 2 20 0.05 1 0 0 0 0 1 0
...........................................................................AAAAAAAAAAAACACAAA.............................................................................................................................................................. 18 0 20 0.05 1 1 0 0 0 0 0
...........................................................................AAAAAAAAAAAACACAATAAA........................................................................................................................................................... 21 1 20 0.05 1 0 0 0 1 0 0
....................................................................................................AAAAAAAATAACGAGCACC.................................................................................................................................... 19 2 20 0.05 1 0 0 0 1 0 0
...................................................................................................AAAAAAGAAAAACGAGCAC..................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0
..................................................................................................CAAAAAGAAAAAACGAACACCA................................................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0
..........................................................................AAAAAAAAAAAAACACAAAAAAACAAAAAAAAACAA............................................................................................................................................. 36 3 20 0.05 1 0 0 0 0 1 0
..................................................................................................AAAAAAAAAAAAACAATCAC..................................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0
..........................................................................AAAAAAAAAAAAACACAAAAA............................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................AAAACAAAAGAACGACCACCA................................................................................................................................... 21 3 20 0.05 1 0 0 0 1 0 0
....................................................................................................AAAAAAAAAGACGACCACC.................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0
....................................................................................................AAAAAAAAGAACGAACACC.................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0
....................................................................................................AAAAAAAAAAACAAGCACCAAACCA.............................................................................................................................. 25 3 20 0.05 1 0 0 0 1 0 0
....................................................................................AAACACAAAAAAGTAACAAAAA................................................................................................................................................. 22 2 20 0.05 1 1 0 0 0 0 0
....................................................................................................ATAAAAAAAAAGGATCACC.................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0
...........................................................................AAAAAAAAAAAACACAAGAAAACAAAAAAAAAAAAA............................................................................................................................................ 36 3 20 0.05 1 0 0 0 1 0 0
...................................................................................................AAAAAAAACAAAAGATCACC.................................................................................................................................... 20 2 20 0.05 1 1 0 0 0 0 0
...................................................................................................AAAAAAAAAAAAGGAGCACCA................................................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0
........................................................................................................AAAAAAACGATCACGACAGA............................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TTATTTGTGTGTGTATATGTATGTGTTTGTGTGTGTGTGTATGTGACCAGCTTTTACAACACAGTTTAGCAACGTTTTTTTTTTTTTGTGTTTTTTAATTTTTTTTTTTTTGCTAGTGGTTTGTTTATGCTGGCTGAGAGCAACAATTGAAAACACAAAGCCACGTGAGTGGAGGCCGAGGCCTATATATATAAAGACATCGGCGGCAACGGCGGCGGTACGCACCTCACCGGTAGGTCGCGCCTGTGCAC
************************************************************************************************************************************............................................*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V105
male body		 V055
head
 V039
embryo
.................................................................................................................................................................................................................................CTCACCAGTATGTCGCTCC....... 19 3 18 0.67 12 12 0 0 0 0
......................................................................................................................................................................................CTAGATATAAACAGACATCGG................................................ 21 3 4 0.25 1 0 1 0 0 0
...............................................................................................................................................................................ACCAGGCCTATATATATAA......................................................... 19 2 6 0.17 1 0 1 0 0 0
...............................................................................................................................................................................................................................ATCTCACCAGTAGGTCGCTCC....... 21 3 6 0.17 1 1 0 0 0 0
....................................................................................................................................................................................................................................ACCGCTAGGGCGCACCTGTG... 20 3 7 0.14 1 0 0 1 0 0
........GTGTGTAGATGTATTGGTTTGT............................................................................................................................................................................................................................. 22 3 13 0.08 1 0 0 0 1 0
........................................................................................................................................AGGGCTACAATTGAAAACT................................................................................................ 19 3 18 0.06 1 0 0 0 1 0
.................................................................................................................................................................GACGTGAGTTGTGGCCGAG....................................................................... 19 3 18 0.06 1 0 0 0 0 1
.........................TTTGTGTGTGTGTGTATGTAA............................................................................................................................................................................................................. 21 1 20 0.05 1 1 0 0 0 0
.................................................................................................................GAGTGGTTTGATTATGCGG....................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:15484688-15484938 + dan_2656 AATAAACACACACATA----TACAT-A------------------------------------------CA------------------------CAA----------------------------------------------ACACACACAC---------ACATACACTGGTCGAAAATGTTGTGT-CAAATCGTTGCAAAAAAAAAAA--------------A----------------ACA-------CAAAAA--AT-----------------------------------------------------------TAAA------------------AAAA--AAAAAACGAT-CACCAAACA----AATACGAC-CGA-----------------------------CTCTCGTTGTTAACTTTTGT---GT-----TTCGGT-G---------------------------------------------CACTCACCTCCGGCTCCGGATA-----TATA-TATTTCTGTAGCCGCCGTTGCCGCCGCCATGCGTGGAGTGGCCATCCAGCGCGGACACGTG
droBip1 scf7180000395832:64358-64605 + AATAAACACACATATACA--T-----A------------------------------------------CA------------------------CAACCAC------------------------------------------ACACACACCT---------ACACACACTGGTCGAAAATGTTGTGT-CAAATCGTTGCAAAAAAAACAA--------------C------------------A-------A--AAA--ATAT------------------------------------------------TTAAAA-----------------------------------AACGAT-CACCAAACA----AAAACGACCCGA-----------------------------CTCTCGTTGTTAACTTTTGT---GT-----TTCGGT-G---------------------------------------------CACTCACCTCCGGCTCCGGATAT---ATATA-TATTTCTGTAGCCGCCGTTGCCGCCGCCATGCGTGGAGTGGCCATCCAGCGCGGACACGTG
droKik1 scf7180000302351:881304-881553 - AATAAACAC----ATGAACATACA--------------------T-------------------AAATATA------------------------T--AAACAAAC-----------------------------ACG--------AAATATATAAAC-AA----ATA-------CAAAAATGTTGTGT-GAAATCGTTGCAAAAAACAAAA--------------A----------------CCCTAT-------CAT--A------ACCGAA--------AAACTATCGC------------------------CAA--------------------------------AAA-------AACCAAACA----AAAACGA----------------------------------TT------------TTTGGT---------------T-G-------TTTCTTGCGTGGGT--------TTAAAATTGCG------------------------ATATGCGATATA-TCCTCCTGCAGCCGCCGTTGCCGCCGCCATGCGTGGAGTGGCCATCCAGCGCGGACATGTG
droFic1 scf7180000453841:461784-462005 - AA---ACACACACATAAA--C-----CAAAAATAA---------------------T--------------------------AAA-AAACCGCATAAATATGAAC-----------------------------AAA---------------------AA----ACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAAACAAA--------------A----------------AA-------------ATCATATAAAAATACCCA----------------------------------------AAA--------------------------------AAA-------AAAAAAACA----AATACGA----------------------------------AT------------TTCCGTTTCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTG
droEle1 scf7180000490564:1430998-1431231 + AA---ACACACACATAAAA-C-----CA--AATCAAAAAA-----A-----------------AAAATATATATATATAAAATAAA-AA--TACATAAATATAAAC-----------------------------A-----------------------AA----ATACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAACAAA----------------------------------ACA-------AAAAAAATACATAT--------------------------------------------------------------------------------------AA---ATCCCA----AAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACAAATG
droRho1 scf7180000780091:224078-224279 + AA---ACACACACATAAA--C-----CAAA------------------------------A----------------------------------AAA------------------------------------------------AAATATATAAACAAA----ATACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAAAAAAA--------------A----------------ACA-------AACAAA--ATATAT--------------------------------------------------------------------------------------AA---ATCCCC----AAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTG
droBia1 scf7180000302428:7155556-7155775 - AA---ACACACACATAAAAAC-----CAAAAATAAAAAAATACAT-------------------AAAT-------------------ATAT-------ATACAAA-------------------------------AA---------------------AA----ACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAACAAAC--------------A---------------AACA-AA--------AAACCAAAAT--------------------------------------------------------------------------------------AA---ATCCCT----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATCCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTG
droTak1 scf7180000412818:107826-108033 + AA---ACACACACATAAA--C-----CA-AAATAAA------------------------AA-AAAAT-------------------ACAT-AAATAAATATAAAC-----------------------------AACAA------------AA-----AA----ACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAACAA-----------------------------------------------------AAAT--------------------------------------------------------------------------------------AA---ATCCCT----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATCCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTG
droEug1 scf7180000409711:2448130-2448333 + AAAAACAAA----AAAAAAACATAA-C----------------------------------------------------------------TA------TAA------------------------------------------AAAAACAAAC---------ACATACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAAAAAAC--------------A----------------AAA-----CAAACAAA--TTTTAT--------------------------------------------------------------------------------------AA---ATCCCC----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACATGTG
dm3 chr3L:10577740-10577965 + AA---ACACACACATAAA--TG---ACAAAAATAAA------------------------AAAAAAAT-------------------ATATCACATAAATACAAAC-----------------------------AAT---------------------AA----ACACTCTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAAAAAAA--------------A----------------ACA-AAAAC-----AAACATATAT--------------------------------------------------------------------------------------AA---ATGCCC----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTG
droSim2 3l:10324550-10324759 + AA---ACACACACATAAA--TG---ACAAAAATAAA---------------------------AAAAT-------------------ATATCACATAAATACAAAC-----------------------------AAT---------------------AA----ACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAACAA-------------------------------------------------ACATATAT--------------------------------------------------------------------------------------AA---ATGCCC----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTG
droSec2 scaffold_0:2796208-2796420 + AA---ACACACACATAAA--TG---ACAAAAATAAA------------------------AAAAAAAT-------------------ATATCACATAAATACAAAC-----------------------------AAT---------------------AA----ACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAACAA-------------------------------------------------ACATATAT--------------------------------------------------------------------------------------AA---ATGCCC----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTG
droYak3 3L:10573276-10573514 + dya_761 AA---ACACACACATAAA--TG---ACAAA--TAA---------------------TTAAAAAAAAAA-------------------ATATCATATAAATACAAAC-----------------------------AAT---------------------AA--ACACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAAAAAAA--------------AAAAAAAAAACAAACAAAC------------AAACATATAT--------------------------------------------------------------------------------------AA---ATGCCC----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTG
droEre2 scaffold_4784:10574167-10574386 + AA---ACACACACATAAA--TG---ACAAAA--------------AAAAATAATAAT--------------------------AAAAATATCACATAAATACAAAC-----------------------------AAT---------------------A---AAACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAAAAAAA--------------A--------------------------------ACATATAT--------------------------------------------------------------------------------------CA---ATGCCC----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTG
dp5 XR_group6:8997170-8997379 + AACACAAAA----ACACACACACA--------------------C-------------------A--------------------------CACATACATACAAAC-----------------------------CACACACACACACAAACAC-------ACGCCTACACTGGTCAAAAATGTTGTGT-GAAATCGTTGCAAAAAAAAAAC--------------------------------------------------------------------------TATCGC------------------------AAA------------------------------AAAAA-------AACCAAACAAAAATACCCCC----------------------------------AT------------CCCCGTTACGC-----CTC-----------------------------------------------------------------------------------------ACAGCCGCCGTAGCAGCTGCCATGCGTGGAGTGGCCATTCAACGTGGACATGTG
droPer2 scaffold_80:30010-30234 - AC---ACACACACACACA--C-----A--------------------------------------------------------------------CACAC--------------------------------------------ACACACACAC---------GCACACACTA-------GTGCACTCT-CCAACAATCGCACACACACACA--------------C----------------ACG------------CCCACACACACACACCTACAGAGAGAATCGTCGGGAGATGAGCAACAGTCGGCACTGGCA----------------------------------GC-------GACTGAACG-AG----------CGA------------------------------------CCTTAACTTCCGTATTGC-----TCTCGTCG-----------------------------------------------------------------------------TGTCTTCGTTGTCGTCGTTGTCGTTCTCGTTGTCGGTGCCGTCGTT---------------
droWil2 scf2_1100000004830:791161-791443 - AATACAAAC--AAAA--ACAAA--------------------------------------------------------------------CTATACAAAC--------------------------------------------ACACATACAC---------ACACACACTGGT-AAAATTGTTGTGT-AAAATCGTTGCAAAAAAAAAAAACCACACACACACAAAACAAAA-------------------------------------------------------------------------------CTAAAAAATCAAACAA----------------ACAAAAAAA-------AACCAAACCAAAATAC-CGA----------------------------------A-----------AATTTTAT---TTTTTGGTTACGC-CAACACAAACCCTCCCGTCCGTCCCCGCCCCCCATTTCACGTTACGC-CACA-------------------------C---AGCCGCCGTAGCTGCCGCCGCTGCAATGCGTGGAGTTACCATACAACGTGGACACGTG
droVir3 scaffold_13049:16376517-16376705 + CA----CACACACATACACACACA-----------------------------------------------------------------------TACACAC------------------------------------------ACACACACAC---------ACACACACTGGT-AAAAATGTTGTGTACAAATCGTTGCAAAAATATCAA-----------------------------------------------------------------------------------------------------------------TCAAAAATCAAAATCCAAAAACA--------------------------AAAA--------------------------------------------------------AATCGT-----TTGGCC-G---------------------------------------------C-CTCA-------------------------C---AGCCGCCGTAGCCGCCGCCGCTGCCATGCGTGGAGTTGCCATACAACGTGGACACGTG
droMoj3 scaffold_6496:7368402-7368632 + AATACACA--CACATCTA--TACAA-C-----TCCA---------------------------------CC----------------CACCCACACACACACATAC-----------------------------ACA---------------------CTAC--TTTCACATGA-AAAATCGTAAAGA-AAACTCAGCGCAAAAAAAAAAA--------------A----------------ACCAAA-------AAC--A------AAGACG--------AAACTAT---------------------------TT----------------------------------TT----GAGCCC----AAAAAAC-CACC---CAATCCAAAACTTTTTACAGATTTAAGGACGCTT------------TACTGTAATTT-----TGCGAC-G------------------------------------------------------------------------------GCTGTTGTAGCAGCGGCTGCCACCAACAAG-------------------------ACAAC
droGri2 scaffold_15110:12305861-12306142 - AACACAAA-ACAAATACA--CG---CGAAA--C---------------------------------------ATATATAAAATGAA-AAACCG--TGTGTACAAACACCCACACACAACACACACGCACACTTACAACACTCACACACACACAC---------ACACTTACTGGT-AAAAATGTTGTGTAAAAATCGTTGCAAAAACAAACA--------------AAACAAAA----------------------AAA-----------------------------------------------------------AAATCAATCAAAAATCAAAATCAAAAAAAA-----AA---ACCC------------------------------------------------------T------------TAAAAAATCGT-----TTGGCC-G---------------------------------------------C-CTCA-------------------------C---AGCCGCCGTAGCCGCCGCCGCTGCCATGCGTGGAGTTGCCATACAACGTGGACACGTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AATAAACACACACATA----TACAT-A------------------------------------------CA------------------------CAA----------------------------------------------ACACACACAC---------ACATACACTGGTCGAAAATGTTGTGT-CAAATCGTTGCAAAAAAAAAAA--------------A----------------ACA-------CAAAAA--AT-----------------------------------------------------------TAAA------------------AAAA--AAAAAACGAT-CACCAAACA----AATACGAC-CGA-----------------------------CTCTCGTTGTTAACTTTTGT---GT-----TTCGGT-G---------------------------------------------CACTCACCTCCGGCTCCGGATA-----TATA-TATTTCTGTAGCCGCCGTTGCCGCCGCCATGCGTGGAGTGGCCATCCAGCGCGGACACGTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTGTAGCCGCCGTTGC........................................2111.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATCCAGCGCGGACAC...2011.001010000
....................................................................................................................................................................................................................................................................................................................................AA------------------AAAA--AAAAAACGAT-CACC..................................................................................................................................................................................................................................2011.001010000
..................................................................................................................................................ACACACAC---------ACATACACTGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................AAAA--AAAAAACGAT-CACC..................................................................................................................................................................................................................................1811.001010000
..........................................................................................................................................................................................................AAAAAAAAAA--------------A----------------ACA-------CAAAAA--AT-----------------------------------------------------------.............................................................................................................................................................................................................................................................................2230.331010000
.....................ACAT-A------------------------------------------CA------------------------CAA----------------------------------------------ACACACACAC---------AC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2240.251010000
..........................................................................................................................................................................................................................................................................................................................................................AA--AAAAAACGAT-CACCACC...............................................................................................................................................................................................................................1980.131010000
..........................................................................................................................................................................................................AAAAAAAAAA--------------A----------------ACA-------CAAA..............................................................................................................................................................................................................................................................................................................................................18200.051010000
.........................................................................................................................................................................................................AAAAAAAAAAA--------------A----------------ACA-------CAAAAA--..........................................................................................................................................................................................................................................................................................................................................21200.051010000
droBip1
AATAAACACACATATACA--T-----A------------------------------------------CA------------------------CAACCAC------------------------------------------ACACACACCT---------ACACACACTGGTCGAAAATGTTGTGT-CAAATCGTTGCAAAAAAAACAA--------------C------------------A-------A--AAA--ATAT------------------------------------------------TTAAAA-----------------------------------AACGAT-CACCAAACA----AAAACGACCCGA-----------------------------CTCTCGTTGTTAACTTTTGT---GT-----TTCGGT-G---------------------------------------------CACTCACCTCCGGCTCCGGATAT---ATATA-TATTTCTGTAGCCGCCGTTGCCGCCGCCATGCGTGGAGTGGCCATCCAGCGCGGACACGTGSizeHit CountTotal NormTotal
No Reads
droKik1
AATAAACAC----ATGAACATACA--------------------T-------------------AAATATA------------------------T--AAACAAAC-----------------------------ACG--------AAATATATAAAC-AA----ATA-------CAAAAATGTTGTGT-GAAATCGTTGCAAAAAACAAAA--------------A----------------CCCTAT-------CAT--A------ACCGAA--------AAACTATCGC------------------------CAA--------------------------------AAA-------AACCAAACA----AAAACGA----------------------------------TT------------TTTGGT---------------T-G-------TTTCTTGCGTGGGT--------TTAAAATTGCG------------------------ATATGCGATATA-TCCTCCTGCAGCCGCCGTTGCCGCCGCCATGCGTGGAGTGGCCATCCAGCGCGGACATGTGSizeHit CountTotal NormTotal
No Reads
droFic1
AA---ACACACACATAAA--C-----CAAAAATAA---------------------T--------------------------AAA-AAACCGCATAAATATGAAC-----------------------------AAA---------------------AA----ACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAAACAAA--------------A----------------AA-------------ATCATATAAAAATACCCA----------------------------------------AAA--------------------------------AAA-------AAAAAAACA----AATACGA----------------------------------AT------------TTCCGTTTCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTGSizeHit CountTotal NormTotal
No Reads
droEle1
AA---ACACACACATAAAA-C-----CA--AATCAAAAAA-----A-----------------AAAATATATATATATAAAATAAA-AA--TACATAAATATAAAC-----------------------------A-----------------------AA----ATACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAACAAA----------------------------------ACA-------AAAAAAATACATAT--------------------------------------------------------------------------------------AA---ATCCCA----AAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACAAATGSizeHit CountTotal NormTotal
No Reads
droRho1
AA---ACACACACATAAA--C-----CAAA------------------------------A----------------------------------AAA------------------------------------------------AAATATATAAACAAA----ATACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAAAAAAA--------------A----------------ACA-------AACAAA--ATATAT--------------------------------------------------------------------------------------AA---ATCCCC----AAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTGSizeHit CountTotal NormTotal
No Reads
droBia1
AA---ACACACACATAAAAAC-----CAAAAATAAAAAAATACAT-------------------AAAT-------------------ATAT-------ATACAAA-------------------------------AA---------------------AA----ACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAACAAAC--------------A---------------AACA-AA--------AAACCAAAAT--------------------------------------------------------------------------------------AA---ATCCCT----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATCCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTGSizeHit CountTotal NormTotal
No Reads
droTak1
AA---ACACACACATAAA--C-----CA-AAATAAA------------------------AA-AAAAT-------------------ACAT-AAATAAATATAAAC-----------------------------AACAA------------AA-----AA----ACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAACAA-----------------------------------------------------AAAT--------------------------------------------------------------------------------------AA---ATCCCT----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATCCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTGSizeHit CountTotal NormTotal
No Reads
droEug1
AAAAACAAA----AAAAAAACATAA-C----------------------------------------------------------------TA------TAA------------------------------------------AAAAACAAAC---------ACATACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAAAAAAC--------------A----------------AAA-----CAAACAAA--TTTTAT--------------------------------------------------------------------------------------AA---ATCCCC----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACATGTGSizeHit CountTotal NormTotal
No Reads
dm3
AA---ACACACACATAAA--TG---ACAAAAATAAA------------------------AAAAAAAT-------------------ATATCACATAAATACAAAC-----------------------------AAT---------------------AA----ACACTCTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAAAAAAA--------------A----------------ACA-AAAAC-----AAACATATAT--------------------------------------------------------------------------------------AA---ATGCCC----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................ACTCTGGTCAAAAATGTTGTGT-CAAA.............................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TCAAAAATGTTGTGT-CAAATGGTTGC......................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAATGCGTGGAGTGGCCATCCAGC...........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTT..........................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGT...........................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..................................................................................................................................................................................................................AA--------------A----------------ACA-AAAAC-----AAACATATAT--------------------------------------------------------------------------------------AA---ATGCCC----C..............................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------AT..........................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCA...................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CACATAAA--TG---ACAAAAATAAA------------------------AAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAG..................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CACACATAAA--TG---ACAAAAATAAA------------------------AAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGTGGAGTGGCCATC...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........CACACATAAA--TG---ACAAAAATAAA------------------------AAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TCTGGTCAAAAATGTTGTGT-CAAATGGT.........................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................AC-----------------------------AAT---------------------AA----ACACTCTGGTCAAAAATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................TGTGT-CAAATGGTTGCAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------AT..........................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------AT..........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCCGCAATGCGTGGAGTGGC...................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCCGTTGCCGCCGCA.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGC....................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCC................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGAGTGGCCATCCAG............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AATGTTGTGT-CAAATGGTTGCAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................TATAT--------------------------------------------------------------------------------------AA---ATGCCC----CAAAAATATACGA----------------------------------A...............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCC.......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCC................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGT...........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AAAAAAAAAAA--------------A----------------ACA-AAAAC-----AAACA.........................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATT.........................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CACACATAAA--TG---ACAAAAATAAA------------------------AAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCAATGCGTGGAGTGGC...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGAGTGGCCATCCAGCG..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGC.................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................AAA--------------A----------------ACA-AAAAC-----AAACATATAT--------------------------------------------------------------------------------------AA---ATGC.....................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGGAGTGGCCATCCAGCGCGGACA....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-...........................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TCAAAAATGTTGTGT-CAAATGGTTGCAA....................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................AAAAAAAAA--------------A----------------ACA-AAAAC-----AA............................................................................................................................................................................................................................................................................................................................................20200.3060000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AAAAAAAAAAA--------------A----------------ACA-AAAAC-----..............................................................................................................................................................................................................................................................................................................................................20200.3060000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................A--TG---ACAAAAATAAA------------------------AAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................AAAAAAA--------------A----------------ACA-AAAAC-----AAACA.........................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AAAAAAAAAAA--------------A----------------ACA-AAAA....................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AAAAAAAAAA--------------A----------------ACA-AAAAC-----AAA...........................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AAAAAAAAAAA--------------A----------------ACA-AAAAC-----AA............................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AAAAAAAAAA--------------A----------------ACA-AAAAC-----AAACAC........................................................................................................................................................................................................................................................................................................................................25140.0710000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AAAAAAAAAAA--------------A----------------ACA-AAAAC-----A.............................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................AAAAAAAA--------------A----------------ACA-AAAAC-----AAA...........................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CAAAAATAAA------------------------AAAAAAAT-------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AAAAAAAAA--------------A----------------ACA-AAAAC-----AAA...........................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AA---ACACACACATAAA--TG---ACAAAAATAAA---------------------------AAAAT-------------------ATATCACATAAATACAAAC-----------------------------AAT---------------------AA----ACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAACAA-------------------------------------------------ACATATAT--------------------------------------------------------------------------------------AA---ATGCCC----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCC.............................................2311.00100001000000000000
droSec2
AA---ACACACACATAAA--TG---ACAAAAATAAA------------------------AAAAAAAT-------------------ATATCACATAAATACAAAC-----------------------------AAT---------------------AA----ACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAACAA-------------------------------------------------ACATATAT--------------------------------------------------------------------------------------AA---ATGCCC----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AA---ACACACACATAAA--TG---ACAAA--TAA---------------------TTAAAAAAAAAA-------------------ATATCATATAAATACAAAC-----------------------------AAT---------------------AA--ACACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAAAAAAA--------------AAAAAAAAAACAAACAAAC------------AAACATATAT--------------------------------------------------------------------------------------AA---ATGCCC----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGCCATCCAGCGCGGACA....2111.00110000000000
........................................................................................................................................................................................................CAAAAAAAAAAA--------------AAAAAAAAAACAAACAAAC------------AAAA..........................................................................................................................................................................................................................................................................................................................................3511.00100001000000
.........................................................................................................................................................................................................AAAAAAAAAAA--------------AAAAAAAAAAC..................................................................................................................................................................................................................................................................................................................................................................22200.10202000000000
.........................................................................................................................................................................................................AAAAAAAAAAA--------------AAAAAAAAAACAAACAAAC------------AAAACA........................................................................................................................................................................................................................................................................................................................................36170.06100010000000
.........................................................................................................................................................................................................AAAAAAAAAAA--------------AAAAAAAAAACAA................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
droEre2
AA---ACACACACATAAA--TG---ACAAAA--------------AAAAATAATAAT--------------------------AAAAATATCACATAAATACAAAC-----------------------------AAT---------------------A---AAACACACTGGTCAAAAATGTTGTGT-CAAATGGTTGCAAAAAAAAAAA--------------A--------------------------------ACATATAT--------------------------------------------------------------------------------------CA---ATGCCC----CAAAAATATACGA----------------------------------AT------------TTCCGTATCGG-----TTCGGT-G------------------------------------------------------------------------------ATTCCTGCAGCCGCCGTTGCCGCCGCAATGCGTGGAGTGGCCATCCAGCGCGGACACGTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
AACACAAAA----ACACACACACA--------------------C-------------------A--------------------------CACATACATACAAAC-----------------------------CACACACACACACAAACAC-------ACGCCTACACTGGTCAAAAATGTTGTGT-GAAATCGTTGCAAAAAAAAAAC--------------------------------------------------------------------------TATCGC------------------------AAA------------------------------AAAAA-------AACCAAACAAAAATACCCCC----------------------------------AT------------CCCCGTTACGC-----CTC-----------------------------------------------------------------------------------------ACAGCCGCCGTAGCAGCTGCCATGCGTGGAGTGGCCATTCAACGTGGACATGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AC---ACACACACACACA--C-----A--------------------------------------------------------------------CACAC--------------------------------------------ACACACACAC---------GCACACACTA-------GTGCACTCT-CCAACAATCGCACACACACACA--------------C----------------ACG------------CCCACACACACACACCTACAGAGAGAATCGTCGGGAGATGAGCAACAGTCGGCACTGGCA----------------------------------GC-------GACTGAACG-AG----------CGA------------------------------------CCTTAACTTCCGTATTGC-----TCTCGTCG-----------------------------------------------------------------------------TGTCTTCGTTGTCGTCGTTGTCGTTCTCGTTGTCGGTGCCGTCGTT---------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AATACAAAC--AAAA--ACAAA--------------------------------------------------------------------CTATACAAAC--------------------------------------------ACACATACAC---------ACACACACTGGT-AAAATTGTTGTGT-AAAATCGTTGCAAAAAAAAAAAACCACACACACACAAAACAAAA-------------------------------------------------------------------------------CTAAAAAATCAAACAA----------------ACAAAAAAA-------AACCAAACCAAAATAC-CGA----------------------------------A-----------AATTTTAT---TTTTTGGTTACGC-CAACACAAACCCTCCCGTCCGTCCCCGCCCCCCATTTCACGTTACGC-CACA-------------------------C---AGCCGCCGTAGCTGCCGCCGCTGCAATGCGTGGAGTTACCATACAACGTGGACACGTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CA----CACACACATACACACACA-----------------------------------------------------------------------TACACAC------------------------------------------ACACACACAC---------ACACACACTGGT-AAAAATGTTGTGTACAAATCGTTGCAAAAATATCAA-----------------------------------------------------------------------------------------------------------------TCAAAAATCAAAATCCAAAAACA--------------------------AAAA--------------------------------------------------------AATCGT-----TTGGCC-G---------------------------------------------C-CTCA-------------------------C---AGCCGCCGTAGCCGCCGCCGCTGCCATGCGTGGAGTTGCCATACAACGTGGACACGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................CA--------------------------AAAA--------------------------------------------------------AATCGT-----TTGGCC-G---------------------------------------------C-CTCA-------------------------C---A.........................................................2611.001000000000000000000000000000000000000000000000000000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACAACGTGGACACGT.1811.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................CAC------------------------------------------ACACACACAC---------ACACACACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102020000000000000000000000000000000000000000000000000000000000000
..............TACACACACA-----------------------------------------------------------------------TACACAC------------------------------------------ACAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.............ATACACACACA-----------------------------------------------------------------------TACACAC------------------------------------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000010000000000000000000000000000000000000000000
................CACACACA-----------------------------------------------------------------------TACACAC------------------------------------------ACAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................C------------------------------------------ACACACACAC---------ACACACACT...................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000000000000000000000000000000000000000000000000000000000000
droMoj3
AATACACA--CACATCTA--TACAA-C-----TCCA---------------------------------CC----------------CACCCACACACACACATAC-----------------------------ACA---------------------CTAC--TTTCACATGA-AAAATCGTAAAGA-AAACTCAGCGCAAAAAAAAAAA--------------A----------------ACCAAA-------AAC--A------AAGACG--------AAACTAT---------------------------TT----------------------------------TT----GAGCCC----AAAAAAC-CACC---CAATCCAAAACTTTTTACAGATTTAAGGACGCTT------------TACTGTAATTT-----TGCGAC-G------------------------------------------------------------------------------GCTGTTGTAGCAGCGGCTGCCACCAACAAG-------------------------ACAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----TGCGAC-G------------------------------------------------------------------------------GCTGTTGTAGCAGCGGCTGC........................................2811.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC-G------------------------------------------------------------------------------GCTGTTGTAGCAGCGGCTGCCACC....................................2911.001000010
droGri2
AACACAAA-ACAAATACA--CG---CGAAA--C---------------------------------------ATATATAAAATGAA-AAACCG--TGTGTACAAACACCCACACACAACACACACGCACACTTACAACACTCACACACACACAC---------ACACTTACTGGT-AAAAATGTTGTGTAAAAATCGTTGCAAAAACAAACA--------------AAACAAAA----------------------AAA-----------------------------------------------------------AAATCAATCAAAAATCAAAATCAAAAAAAA-----AA---ACCC------------------------------------------------------T------------TAAAAAATCGT-----TTGGCC-G---------------------------------------------C-CTCA-------------------------C---AGCCGCCGTAGCCGCCGCCGCTGCCATGCGTGGAGTTGCCATACAACGTGGACACGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:08 AM