ID:

dan_260

 Coordinate:

scaffold_13340:4690341-4690403 -

 Confidence:

Known Ortholog

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.9

Flybase annnotation

intron [Dana\GF17219-in]; utr5 [utr5_plus_12030]; CDS [Dana\GF17219-cds]; CDS [Dana\GF17219-cds]; utr3 [utr3_plus_6706]

No Repeatable elements found

Sense Strand Reads

CAGGAGCGGGAAGACGAGATGCGCGAACTGGCGCTCAAGCTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTTATTTGGCCGGTCCTCTCACATCTCCATATTCACAGGCGTCGAGAGCTGCGCCACAAGTATGGTACGCCCTCCAGCGGAAAACTTT

**************************************************((((((((...((((((((((((((.......))))).....)))))))))..))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044

female body

 M058

embryo

 V106

head

 V105

male body		 V039

embryo

 V055

head
...........................................................................................TCTCACATCTCCATATTCACAG.................................................. 22 0 1 2399.00 2399 1838 296 94 12 108 51
...........................................................................................TCTCACATCTCCATATTCACA................................................... 21 0 1 983.00 983 526 303 29 8 70 47
..................................................GTGAGTATAGTGGATGTGGGTGG.......................................................................................... 23 0 1 683.00 683 114 5 385 176 0 3
...........................................................................................TCTCACATCTCCATATTCACAGT................................................. 23 1 1 593.00 593 260 151 49 33 25 75
...........................................................................................TCTCACATCTCCATATTCAC.................................................... 20 0 1 316.00 316 79 202 14 1 12 8
............................................................................................CTCACATCTCCATATTCACAG.................................................. 21 0 1 118.00 118 116 2 0 0 0 0
...........................................................................................TCTCACATTTACATATTCACAG.................................................. 22 2 1 110.00 110 97 12 1 0 0 0
...........................................................................................TCTCACATCTCCATATTCACAGTT................................................ 24 2 1 82.00 82 42 11 16 2 3 8
...........................................................................................TCTCACATGTCCATATTCACAG.................................................. 22 1 1 73.00 73 73 0 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCACAGC................................................. 23 1 1 64.00 64 2 61 0 0 0 1
...........................................................................................TCTCACATCTCCATATTCACAGA................................................. 23 1 1 62.00 62 19 40 2 0 1 0
..................................................GTGAGTATAGTGGATGTGGGTGGT......................................................................................... 24 1 1 53.00 53 7 0 33 13 0 0
............................................................................................CTCACATCTCCATATTCACA................................................... 20 0 1 38.00 38 36 2 0 0 0 0
............................................................................................CTCACATCTCCATATTCACAGT................................................. 22 1 1 30.00 30 25 2 1 2 0 0
...........................................................................................TGTCACATCTCCATATTCACAG.................................................. 22 1 1 29.00 29 0 29 0 0 0 0
...........................................................................................TCTCACATATCCATATTCACAG.................................................. 22 1 1 29.00 29 29 0 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCACAA.................................................. 22 1 1 28.00 28 8 18 0 0 1 1
...........................................................................................TCTCACATTTACATATTCACA................................................... 21 2 2 24.50 49 43 5 1 0 0 0
...................................................TGAGTATAGTGGATGTGGGTGG.......................................................................................... 22 0 1 24.00 24 8 0 13 2 0 1
...........................................................................................TCTCACATGTCCATATTCACA................................................... 21 1 1 23.00 23 23 0 0 0 0 0
..................................................GTGAGTATAGTGGATGTGGGT............................................................................................ 21 0 1 22.00 22 4 4 7 6 1 0
...........................................................................................TCTCACATCTCCATATTCACAGTA................................................ 24 2 1 21.00 21 3 18 0 0 0 0
..................................................GTGAGTATAGTGGATGTGGGTG........................................................................................... 22 0 1 20.00 20 3 0 9 8 0 0
...........................................................................................TCTCACATGTCCATATTCACAGT................................................. 23 2 1 17.00 17 17 0 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCA..................................................... 19 0 1 17.00 17 4 5 2 0 0 6
..................................................GTGAGTATAGTGGATGTGGG............................................................................................. 20 0 1 17.00 17 2 2 3 10 0 0
...........................................................................................TGTCACATCTCCATATTCACAGT................................................. 23 2 1 15.00 15 0 15 0 0 0 0
...........................................................................................TCTCACATATCCATATTCACA................................................... 21 1 1 14.00 14 14 0 0 0 0 0
...........................................................................................TCCCACATCTCCATATTCACA................................................... 21 1 1 13.00 13 0 13 0 0 0 0
...........................................................................................TCTTACATCTCCATATTCACAG.................................................. 22 1 1 13.00 13 0 13 0 0 0 0
...........................................................................................TCTTACATCTCCATATTCACA................................................... 21 1 1 13.00 13 0 13 0 0 0 0
...........................................................................................TCTCACATTTCCATATTCACAG.................................................. 22 1 1 12.00 12 12 0 0 0 0 0
...........................................................................................TGTCACATCTCCATATTCACA................................................... 21 1 1 12.00 12 0 12 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCACAC.................................................. 22 1 1 12.00 12 3 6 0 0 3 0
..................................................GTGAGTATAGTGGATGTGGGTGGTT........................................................................................ 25 1 1 12.00 12 1 0 9 2 0 0
............................................................................................CTCACATCTCCATATTCAC.................................................... 19 0 1 11.00 11 8 3 0 0 0 0
...........................................................................................TGTCACATCTCCATATTCAC.................................................... 20 1 1 11.00 11 0 11 0 0 0 0
...........................................................................................TCTCACATCTCTATATTCACAG.................................................. 22 1 1 11.00 11 7 3 0 0 1 0
...........................................................................................TCTCACATCTCCATATTCACAGTAA............................................... 25 3 1 10.00 10 1 9 0 0 0 0
..................................................GTGAGTATAGTGGATGTGGGTGT.......................................................................................... 23 1 1 10.00 10 2 0 6 2 0 0
..................................................GTGAGTATAGTGGATGTGG.............................................................................................. 19 0 1 10.00 10 0 1 8 1 0 0
...........................................................................................TCTCACATGTCCATATTCAC.................................................... 20 1 1 9.00 9 9 0 0 0 0 0
.............................................................................................TCACATCTCCATATTCACAG.................................................. 20 0 1 9.00 9 5 2 2 0 0 0
...........................................................................................TCTCACATCTCCATATTCACAT.................................................. 22 1 1 8.00 8 2 0 0 0 6 0
...................................................TGAGTATAGTGGATGTGGGTGGT......................................................................................... 23 1 1 8.00 8 0 0 7 1 0 0
...........................................................................................TCCCACATCTCCATATTCACAGT................................................. 23 2 1 7.00 7 0 6 0 0 0 1
............................................................................................CTCACATCTCCATATTCACAGTT................................................ 23 2 1 7.00 7 5 0 2 0 0 0
...........................................................................................TCCCACATCTCCATATTCAC.................................................... 20 1 1 7.00 7 0 7 0 0 0 0
...........................................................................................TCTTACATCTCCATATTCACAGT................................................. 23 2 1 7.00 7 0 7 0 0 0 0
..................................................GTTAGTATAGTGGATGTGGGTGG.......................................................................................... 23 1 1 7.00 7 0 0 7 0 0 0
...........................................................................................TCCCACATCTCCATATTCACAG.................................................. 22 1 1 6.00 6 1 5 0 0 0 0
..........................................................................................CTCTCACATCTCCATATTCACAG.................................................. 23 0 1 6.00 6 5 1 0 0 0 0
..................................................GTGAGTATAGTGGATGTGGGCGG.......................................................................................... 23 1 1 6.00 6 0 0 3 3 0 0
...........................................................................................TCTCACATCTCTATATTCACA................................................... 21 1 1 6.00 6 5 0 0 0 1 0
...........................................................................................TCTCACATCTCTTTATTCACAG.................................................. 22 2 1 6.00 6 2 2 0 0 2 0
..................................................GTGAGTATGGTGGATGTGGGTGG.......................................................................................... 23 1 1 6.00 6 6 0 0 0 0 0
..................................................GTGAGTATAGTGGATGTGGGAGG.......................................................................................... 23 1 1 6.00 6 0 0 4 2 0 0
............................................................................................CTCACATTTACATATTCACAG.................................................. 21 2 1 6.00 6 6 0 0 0 0 0
............................................................................................CTCACATCGCCATATTCACAG.................................................. 21 1 1 6.00 6 6 0 0 0 0 0
..............................................................................................CACATCTCCATATTCACAG.................................................. 19 0 1 6.00 6 4 2 0 0 0 0
...................................................TGAGTATAGTGGATGTGGGT............................................................................................ 20 0 1 5.00 5 0 1 1 1 1 1
.............................................................................................TCACATCTCCATATTCACAGT................................................. 21 1 1 5.00 5 4 0 0 0 0 1
..........................................................................................ATCTCACATCTCCATATTCACAG.................................................. 23 1 1 5.00 5 5 0 0 0 0 0
...................................................TGAGTATAGTGGATGTGGGTG........................................................................................... 21 0 1 5.00 5 0 1 4 0 0 0
...........................................................................................TCCCACATCTCCATATTCACAGC................................................. 23 2 1 5.00 5 0 5 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCACAGG................................................. 23 0 1 5.00 5 4 1 0 0 0 0
...........................................................................................TTTCACATCTCCATATTCAC.................................................... 20 1 1 5.00 5 0 5 0 0 0 0
...........................................................................................TCTTACATCTCCATATTCAC.................................................... 20 1 1 5.00 5 0 5 0 0 0 0
..................................................GTGAGTATAGTGGATGTTGGTGG.......................................................................................... 23 1 1 5.00 5 0 0 4 1 0 0
...........................................................................................TCTCACATATCCATATTCACAGT................................................. 23 2 1 5.00 5 5 0 0 0 0 0
...........................................................................................TTTCACATCTCCATATTCACA................................................... 21 1 1 4.00 4 0 2 0 0 2 0
...........................................................................................TCTCACATTTACATATTCACAGT................................................. 23 3 2 4.00 8 8 0 0 0 0 0
...........................................................................................TATCACATCTCCATATTCACAG.................................................. 22 1 1 4.00 4 0 0 2 0 2 0
............................................................................................CTCACATCTCCATATTCACAGA................................................. 22 1 1 4.00 4 4 0 0 0 0 0
......................................................GTATAGTGGATGTGGGTGG.......................................................................................... 19 0 1 4.00 4 3 0 0 1 0 0
..........................................................................................GTCTCACATCTCCATATTCACAG.................................................. 23 1 1 4.00 4 4 0 0 0 0 0
..........................................................................................TTCTCACATCTCCATATTCACAG.................................................. 23 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................TCTCACATCTACATATTCACAG.................................................. 22 1 1 4.00 4 1 3 0 0 0 0
..................................................GTGAGTATAGTGGATGTGGGTTG.......................................................................................... 23 1 1 4.00 4 0 0 3 0 0 1
...........................................................................................TCTCACATGTACATATTCACAG.................................................. 22 2 1 4.00 4 4 0 0 0 0 0
...........................................................................................GCTCACATCTCCATATTCACAG.................................................. 22 1 1 4.00 4 2 1 0 0 1 0
...........................................................................................TTTCACATCTCCATATTCACAG.................................................. 22 1 1 4.00 4 0 4 0 0 0 0
...........................................................................................TGTCACATCTCCATATTCACAGC................................................. 23 2 1 3.00 3 0 3 0 0 0 0
..................................................GTGAGTATAGTGGATGTGAGTGG.......................................................................................... 23 1 1 3.00 3 1 0 1 1 0 0
...........................................................................................TCTCACATCTCCATATTCACC................................................... 21 1 1 3.00 3 0 0 1 0 2 0
..................................................GTTAGTATAGTGGATGTGGGTGT.......................................................................................... 23 2 1 3.00 3 0 0 3 0 0 0
.............................................................................................TCACATCTCCATATTCACA................................................... 19 0 1 3.00 3 1 1 0 0 0 1
...........................................................................................TGTTACATCTCCATATTCACAG.................................................. 22 2 1 3.00 3 0 3 0 0 0 0
..........................................................................................CTCTCACATCTCCATATTCACA................................................... 22 0 1 3.00 3 0 3 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCACAGTC................................................ 24 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................ATCTCACATCTCCATATTCACAGT................................................. 24 2 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCTCACATCTCTATATTCACAGT................................................. 23 2 1 3.00 3 1 1 0 0 1 0
..................................................GTGAGTATAGTTGATGTGGGTGG.......................................................................................... 23 1 1 3.00 3 0 0 2 1 0 0
...........................................................................................GCTCACATCTCCATATTCACA................................................... 21 1 1 3.00 3 2 0 0 0 0 1
...........................................................................................TCTCACGTCTCCATATTCACAG.................................................. 22 1 1 3.00 3 2 1 0 0 0 0
....................................................GAGTATAGTGGATGTGGGTGG.......................................................................................... 21 0 1 3.00 3 0 0 3 0 0 0
...........................................................................................TCTCACATCTCTATATTCACAC.................................................. 22 2 1 3.00 3 2 1 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCGCAG.................................................. 22 1 1 3.00 3 1 2 0 0 0 0
...........................................................................................TCTCACATATCCATATTCAC.................................................... 20 1 1 3.00 3 3 0 0 0 0 0
............................................................................................CTCACATCACCATATTCACAG.................................................. 21 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCTCACATCTCCATACTCACAG.................................................. 22 1 1 3.00 3 0 2 0 0 1 0
...........................................................................................TCTCACATCTCCATATTCACAGAA................................................ 24 2 1 3.00 3 1 2 0 0 0 0
...........................................................................................CCTCACATCTCCATATTCACA................................................... 21 1 1 3.00 3 1 1 0 0 1 0
..................................................GTGAGTATAGTGGATGTGTGTGG.......................................................................................... 23 1 1 3.00 3 1 0 2 0 0 0
...........................................................................................TCTCACATCTCCATATTCACCG.................................................. 22 1 1 3.00 3 0 0 1 0 2 0
..................................................GTGAGCATAGTGGATGTGGGTGG.......................................................................................... 23 1 1 3.00 3 0 0 1 2 0 0
...........................................................................................TCTCACACCTCCATATTCACA................................................... 21 1 1 3.00 3 1 0 0 0 1 1
...........................................................................................TCTCAGATCTCCATATTCACAGT................................................. 23 2 1 3.00 3 0 2 0 0 1 0
..................................................GTGAGTATAGTGGATGTGGGGGG.......................................................................................... 23 1 1 3.00 3 0 0 1 1 0 1
...........................................................................................TCTCACATATCCATATTCACAGTT................................................ 24 3 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCTCACATTTCCATATTCACAGT................................................. 23 2 1 2.00 2 2 0 0 0 0 0
..................................................GTGAGTATAGTGGATGGGGGTGG.......................................................................................... 23 1 1 2.00 2 1 0 0 0 0 1
..................................................GTGAGTATAGCGGATGTGGGTGG.......................................................................................... 23 1 1 2.00 2 0 0 1 1 0 0
...........................................................................................TCTCACATCTCCCTATTCACA................................................... 21 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCGCA................................................... 21 1 1 2.00 2 0 1 0 0 1 0
...........................................................................................TCTCACATCTCCATATCCACA................................................... 21 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................TCTCACATCTACATATTCACAGT................................................. 23 2 1 2.00 2 0 0 1 0 0 1
...........................................................................................CCTCACATCTCCATATTCACAG.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................TCTCACGTCTCCATATTCACAGT................................................. 23 2 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCTCACATCTCAATATTCACA................................................... 21 1 1 2.00 2 0 0 1 0 0 1
...........................................................................................TCTCACATCTCTTTATTCACA................................................... 21 2 1 2.00 2 1 1 0 0 0 0
............................................................................................CTCACATCGCCATATTCACA................................................... 20 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TTTCACATCTCCATATTCACAGA................................................. 23 2 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCTCACATCCCCATATTCACAG.................................................. 22 1 1 2.00 2 1 0 0 1 0 0
...........................................................................................TGTCACATCTCCATATTCACAGTA................................................ 24 3 1 2.00 2 0 2 0 0 0 0
..................................................GTGAGTATAGTGGATGTGTGTGGT......................................................................................... 24 2 1 2.00 2 0 0 1 1 0 0
...........................................................................................TCTCGCATCTCCATATTCACAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...................................................TGAGTATAGTGGATGTGGG............................................................................................. 19 0 1 2.00 2 0 0 2 0 0 0
...........................................................................................TCCCACATCTCCATATTCACAGA................................................. 23 2 1 2.00 2 0 2 0 0 0 0
..................................................GTGAGTATAGTGGATGTGGGTGGA......................................................................................... 24 1 1 2.00 2 0 0 1 1 0 0
...........................................................................................TCTCACATCTCCCTATTCACAGT................................................. 23 2 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCACG................................................... 21 1 1 2.00 2 0 2 0 0 0 0
...............................................................................................ACATCTCCATATTCACAGT................................................. 19 1 1 2.00 2 0 1 1 0 0 0
...........................................................................................GCTCACATCTCCATATTCACAGTT................................................ 24 3 1 2.00 2 0 0 0 0 1 1
..................................................GTGAGTATAGTGGATGTGGTT............................................................................................ 21 1 1 2.00 2 0 0 0 1 0 1
..................................................GGGAGTATAGTGGATGTGGGTGG.......................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCTCACATCTCCATATTTACA................................................... 21 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCTCACATGTACATATTCACA................................................... 21 2 1 2.00 2 2 0 0 0 0 0
..............................................................................................CACATCTCCATATTCACA................................................... 18 0 1 2.00 2 1 1 0 0 0 0
..........................................................................................CTCTCACATCTCCATATTCACAGT................................................. 24 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................TTTCACATCTCCATATTCACAGT................................................. 23 2 1 2.00 2 0 2 0 0 0 0
...........................................................................................TGTCACATCTCCATATTCACAGA................................................. 23 2 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCTCACATCTCCATATTTAC.................................................... 20 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCTCACATCTCGATATTCACAG.................................................. 22 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCTCACATATCCATATTCACAGA................................................. 23 2 1 2.00 2 1 1 0 0 0 0
...........................................................................................TCGCACATCTCCATATTCACAGT................................................. 23 2 1 2.00 2 0 0 0 0 0 2
...........................................................................................TCTCACATATCCATATTCACAT.................................................. 22 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCTTACATCTCCATATTCACAGC................................................. 23 2 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCACTG.................................................. 22 1 1 2.00 2 1 0 1 0 0 0
..................................................GTGGGTATAGTGGATGTGGGTGG.......................................................................................... 23 1 1 2.00 2 0 0 2 0 0 0
...........................................................................................TCTCACATCTCCATATCCAC.................................................... 20 1 1 2.00 2 0 0 2 0 0 0
..................................................GTGAGTATAGTGGATGTTGGTGGT......................................................................................... 24 2 1 2.00 2 0 0 2 0 0 0
..........................................................................................CTCTCACATCTCCATATTCACAGTT................................................ 25 2 1 2.00 2 1 1 0 0 0 0
...........................................................................................ACTCACATCTCCATATTCACAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
..................................................GTGAGTATAGTGCATGTGGGTGG.......................................................................................... 23 1 1 2.00 2 0 0 0 2 0 0
...........................................................................................TCTCACATCTCCATATTCACAGTTA............................................... 25 3 1 2.00 2 1 1 0 0 0 0
..............................................................................................CACATCTCCATATTCACAGT................................................. 20 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................TCTCACATTTACATATTCAC.................................................... 20 2 3 1.33 4 3 1 0 0 0 0
......................................................GTATAGTGGATGTCGGTGG.......................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................TCTCACATCTCCACCTTCACAG.................................................. 22 2 1 1.00 1 0 0 0 0 0 1
...........................................................................................TCTCACATCTCCATCTTCAC.................................................... 20 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................TCTCACATCTCCATAATCACAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................CTCTCACATCTCCATATTCA..................................................... 20 0 1 1.00 1 0 1 0 0 0 0
............................................................................................CTCACATATCCATATTGACAG.................................................. 21 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................ACTCACATCTCCATATTCACAGT................................................. 23 2 1 1.00 1 0 0 0 0 0 1
...........................................................................................TCTCACATCTCCATAATCACAG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................ACTCACATCTCCATATTCAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCTCACATCGCCATACTCAC.................................................... 20 2 1 1.00 1 0 0 0 0 1 0
..................................................GTGAGTATAGTGGATGTAGGTGGT......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................TTCTCACATTTACATATTCACAG.................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAGTGGATGTGGGTGG.......................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
............................................................................................CTCACATCACCATATTCACAGT................................................. 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................CGCACATCTCCATATTCACAG.................................................. 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCGCAGA................................................. 23 2 1 1.00 1 0 0 1 0 0 0
..................................................GGGAGTATAGTGGATGTGGGTGGA......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTATATTGGATGTGGGTGGT......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................TCTCACATGTCCATATTCACAA.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATCTCCATGTTCACAGT................................................. 23 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................TCTCACATCTCTATATTCACAGC................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...................................................TTAGTATAGTGGATGTGGGTGG.......................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...................................................TGAGTATAGTGGATGTGGGTAG.......................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
.........................................................................CTCTTATTTGGCCGGTCC........................................................................ 18 0 1 1.00 1 0 1 0 0 0 0
..............................................GCACGTGAGTATAGTGGATGTGGGTG........................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCAA.................................................... 20 1 1 1.00 1 0 0 0 0 0 1
..................................................GGGAGTATAGTGGATGTGGGC............................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCTCAGATCCCCATATTCACAG.................................................. 22 2 1 1.00 1 0 0 0 0 0 1
.............................................................................................TCACATCTCCATATTCAC.................................................... 18 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATCTCCATACTCACA................................................... 21 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................TCTCACAACTCCATATTCAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTATAGTGGATGTGGGTTGT......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................TCTCACATCTCCATATGCACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATCTCTATATTCAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..................................................GCGAGTATAGTGGATGTGGGT............................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................TCTCACATGTACGTATTCACAG.................................................. 22 3 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATCTCCATCTTCACA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCACAGTG................................................ 24 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCTCACATTTCCATATTCACAGC................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TATCACAGCTCCATATTCACAG.................................................. 22 2 1 1.00 1 0 0 0 0 0 1
...........................................................................................CCTCACATCTCCATATTCAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CTCTCACACCTCCATATTCACAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTATGGTGGATGTGGGTTG.......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TGTCACATCTCCCTATTCACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCTCACATATCCATATTCACAC.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTTACCTCTCCATATTCACA................................................... 21 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................ATCTCACATCTCCATATTCACA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................CTTCACATCTCCATATTCACAG.................................................. 22 2 1 1.00 1 0 0 0 0 1 0
...........................................................................................TTTTACATCTCCATATTCACAGT................................................. 23 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCTCACATCTCCATACTCA..................................................... 19 1 1 1.00 1 0 0 0 0 0 1
...........................................................................................TCTCACATCTTCATATTCACAG.................................................. 22 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................TCCCACGTCTCCATATTCACAGTC................................................ 24 3 1 1.00 1 0 0 0 0 0 1
...........................................................................................TCTCACATCTCCATATACACAGT................................................. 23 2 1 1.00 1 0 0 1 0 0 0
...................................................TGAGTATAGTGGATGTGGT............................................................................................. 19 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................TCTCTCATCTCCATATTCACAG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CTCTCACATCTCCATATTCACAGA................................................. 24 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................GCTCACATCTCCATATTCACAC.................................................. 22 2 1 1.00 1 0 0 0 0 1 0
..................................................GTTAGTATAGTGGATGTGGGTGGG......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................TCTCACATCTCCATATTGACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATCTCCATATTC...................................................... 18 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATCTACATATTCACA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTATAGTGGATGTGGGTGGC......................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................TGTCACATCTCCATATTCGCA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCACGGT................................................. 23 2 1 1.00 1 0 0 0 1 0 0
...........................................................................................TCTCACACCTCCATATTCACAGC................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TGTCACATCTCCATATTCACACT................................................. 23 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCACATAA................................................ 24 3 1 1.00 1 0 0 0 0 1 0
................................................................................................CATCTCCATATTCACAGT................................................. 18 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATGTCCATATTCACAGA................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........AGACGAGATGCGCGAACTGGC................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCTCGCATCTCCATATTCCCA................................................... 21 2 1 1.00 1 0 0 0 0 0 1
...........................................................................................TCTCACATCGCCATATTCACAG.................................................. 22 1 1 1.00 1 0 0 0 0 0 1
...........................................................................................TCTCACATCTCCCTATTCACAG.................................................. 22 1 1 1.00 1 0 0 0 0 1 0
............................................................................................CTCACATCTCCACATTCACA................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCAAATCTACATATTCACA................................................... 21 2 1 1.00 1 0 0 0 0 0 1
...........................................................................................TATCACTTCTCCATATTCACAG.................................................. 22 2 1 1.00 1 0 0 0 0 0 1
..................................................GTGAGTATAGTGGATGTGGGTGGG......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCAAAGT................................................. 23 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................CCTCACATCTCCATATTCCCAGT................................................. 23 3 1 1.00 1 0 0 0 0 1 0
...........................................................................................TCTCACATCTCCATATTCACAAA................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTATAGTGGATGTGGGTAGT......................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
...................................................TGAGTATAGGGGATGTGGGTGG.......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATCTCCATATGCACAGA................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCTCACATGTCCATATTCACAT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTATAGAGGATGCGGGTGG.......................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1
...........................................................................................TCTCACATCTCCATATGCACA................................................... 21 1 1 1.00 1 0 0 0 0 1 0
...................................................TGAGTATAGTGGATGTGGTT............................................................................................ 20 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................AGCTGCGCCACAAGTATGGTAC.................... 22 0 1 1.00 1 1 0 0 0 0 0
..................................................GTTAGTATAGTGGATGTGGG............................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0
............................................................................................TTCACATCTCCATATTCACAGT................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTATGGTGGATGTGGGTG........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTATCGTGGATGTGGGTGG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTATTGTGGATGTGGGTG........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTATAGTTGATGTGGGTGGT......................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0
...........................................................................................TCTCACATCTCCATATCCACAG.................................................. 22 1 1 1.00 1 0 0 0 0 0 1
...........................................................................................TCTCACATCTCCATACTCACAT.................................................. 22 2 1 1.00 1 0 0 1 0 0 0
...............................................AAAGTGAGTATAGTGGATGTGGGTGG.......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATCTCCACATTCACAGTT................................................ 24 3 1 1.00 1 0 1 0 0 0 0
.......................................................................................GACGTCTCACATCTCCATATTCACAG.................................................. 26 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCGCACATCTCCATATTCACAG.................................................. 22 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGTATAGTGAATGTGGGTGG.......................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGTGTAGTGGATGTGGGAGG.......................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGTACAGTGGATGTGGGTGG.......................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................TCTAACATCTCCATATTCACAG.................................................. 22 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................TCTCACATCTCCATATTCACAAC................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...............TATATGCGCGATCTGGCGCTC............................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 1
...........................................................................................TCTCGCATCTCCATATTCACAGC................................................. 23 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................TCTCTCACATCTCCATATTCACA................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTATAGAGGATGTGGGTGG.......................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................TCTCACAGCTCCATATTCACTG.................................................. 22 2 1 1.00 1 0 0 0 0 0 1
...........................................................................................TCTCACAACTCCATAGTCACAG.................................................. 22 2 1 1.00 1 0 0 0 0 1 0
...........................................................................................TCTCACATCTCCATATTCACTGT................................................. 23 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................TCGCATCTCCATATTCACA................................................... 19 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................TGTCACATCTCTATATTCACA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTATAGTGGATGTGGGTT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATCTCCCTATTCACAT.................................................. 22 2 1 1.00 1 0 0 0 0 1 0
..................................................GTGAGTATAGTGGATGGCGGTGG.......................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
...................................................TGAGTATAGTGGATGTGGGTA........................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTTACATCTCCATATTCACAA.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTATAGTCGATGTGGGTGG.......................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
...................................................TGAGTATAGTGGATGTTGGTG........................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0
..................................................GTGAGAATAGTGGATGTGGGTGG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGTGTATAGTGGATGTGGGTGG.......................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................TCTCACATCTCCATATTCACATT................................................. 23 2 1 1.00 1 0 0 0 0 1 0
............................................................................................ATCACATCTCCATATTCACAG.................................................. 21 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTATTGTGGATGTGGGTGG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATCTCTATATTCACAT.................................................. 22 2 1 1.00 1 0 0 0 0 1 0
...........................................................................................TCCCACATCTCCCTATTCACA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTATAGTGGATTTGGGTGGT......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGTATAGTGGATGTGGTTGG.......................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................TCTCACATCGCCATATTCACA................................................... 21 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................TCGCACATCTCCATATTCACAGTT................................................ 24 3 1 1.00 1 0 0 0 0 0 1
............................................................................................CTCACATCGCCATATTCACAGT................................................. 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................CTCACATCCCCATATTCACAG.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................AGTCTCACATCTCCATATTCACAG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................CTGCTCTCACATCTCCATATTCACAGA................................................. 27 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................GTCTCACATCTCCATATTCACA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCGCATCTCCATATTCAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCTCACTTCTCCATATTCACAGT................................................. 23 2 1 1.00 1 0 0 0 1 0 0
...........................................................................................TCTCACATCTCCATATTCG..................................................... 19 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TTTCACATCTCCATATTCGCA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCTCACATTTCCATATTCACAGTT................................................ 24 3 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCTCACATCTCCATATTCGC.................................................... 20 1 1 1.00 1 0 0 0 0 0 1

Anti-sense strand reads

GTCCTCGCCCTTCTGCTCTACGCGCTTGACCGCGAGTTCGATGCGGCTTCCACTCATATCACCTACACCCACCGAGAATAAACCGGCCAGGAGAGTGTAGAGGTATAAGTGTCCGCAGCTCTCGACGCGGTGTTCATACCATGCGGGAGGTCGCCTTTTGAAA

**************************************************((((((((...((((((((((((((.......))))).....)))))))))..))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058

embryo

 V106

head

 V055

head

 M044

female body
..................................................................................CCGGCCAGGAGAGTGTAG............................................................... 18 0 1 1.00 1 1 0 0 0
................................................................................................GTAGGGGTATGAGTGTCC................................................. 18 2 3 0.33 1 0 1 0 0
.......................................................................CCGATAGTAAACCGGCAAGG........................................................................ 20 3 7 0.14 1 0 0 1 0
.............................................................................CCAAATCGGCCAGGAGAGT................................................................... 19 3 8 0.13 1 0 0 1 0
.................................................................CACCCAACAAGAGTAAACCG.............................................................................. 20 3 10 0.10 1 1 0 0 0
......................................................................................CCACGAGAGTGTGGAGGA........................................................... 18 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13340:4690290-4690453 - dan_260 confident CAGGAGCGGGAAGACGAGATGCGCGAACTGGCGCTCAAGCTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTTA-----TTTGGCC--GGTCCTCTCACATCTCCATATTCACAGGCGTCGAGAGCTGCGCCACAAGTATGGTACGCCCTCCAGCGGAAAACTTTC
droBip1 scf7180000396359:499256-499420 + CAGGAGCGCGAAGACGAGATGCGTGAACTGGCGCTAAAGTTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTAA---A-TATGGCC--AGTCCTCTCACATCTCCATATTCACAGGCGTCGCGAGCTGCGCCACAAGTATGGCACGCCCTCCAGCGGCAAACTGTC
droKik1 scf7180000302388:1718874-1719035 - CAGGAGCGAGAGGACGAGATGCGGGAGCTGGCGCTGAAACTGCGTCGAAGGTGAGTATTGTGGGTGTGGGTGGCTCTG------G-CGGCC--AGTCCTCTCACATCACCATATTCACAGGCGTCGCGAGCTACGCCACAAATACGGCACGCCCTCCAGCGGAAAGCTCTC
droFic1 scf7180000454106:1827812-1827968 - CAAGAGCGCGAGGACGAGATGCGTGAACTGGCGCTGAAGCTGCGCAGAAGGTGAGTATC-TGGATGTGACTGGCTCTT------G-----C--GGTCCTCTCACATCTAGTTATTCTCAGGCGCCGTGAGCTGCGACACAAATACGGAACGCCATCGAGCGGCAAGCTATC
droEle1 scf7180000491194:539698-539857 + CAGGAACGTGAGGACGAGATGCGCGAACTGGCGCTGAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTTGGCTCTT------C-TGG-G--CGTCCTCTCACATCTACATATTCACAGGCGGCGTGAGCTGCGCCACAAGTATGGGACCCCTTCGAGCGGCAAGCTCTC
droRho1 scf7180000779488:582408-582564 + CAGGAGCGTGAAGACGAGATGCGTGAACTGGCGCTGAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTCGGCTTTA------G-----C--GGTCCTCTCACATCTACATATTCACAGGCGCCGTGAGCTGCGTCACAAGTATGGTACACCCTCGAGTGGAAAGCTGTC
droBia1 scf7180000302402:4263746-4263902 + CAGGAACGCGAGGACGAGATGCGTGAGCTGGCGCTGAAGCTGCGCAGAAGGTGGGTATT-TTGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATCTATATATTCACAGGCGTCGTGAGCTGCGGCACAAATATGGCACGCCCTCCAGCGGCAAGCTCTC
droTak1 scf7180000415310:656290-656446 - CAGGAGCGCGAGGACGAGATGCGTGAGCTGGCGCTGAAGCTGCGCAGGAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATCTACATATTCACAGGCGTCGTGAGCTGCGACACAAATACGGAACGCCCTCGAGCGGCAAGCTTTC
droEug1 scf7180000409881:208805-208961 + CAGGAGCGTGAGGACGAGATGCGTGAGTTGGCTTTGAAGCTGCGCAGGAGGTGGGTATC-TTGATGTGGTTGGCTCCG------G-----C--TGTCCTCTCACATCTGTATATTCACAGGCGTCGTGAGCTGCGTCACAAGTATGGAACGCCCTCAAGCGGCAAGCTGTC
dm3 chr3R:20484277-20484433 + dme-mir-1003 Known_mirbase CAGGAACGCGAGGATGAGATGCGCGAACTGGCCCTCAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCGAGTGGAAAGCTCTC
droSim2 x:5236378-5236534 - dsi-mir-1003 Known_mirbase CAGGAGCGCGAGGATGAGATGCGCGAACTGGCACTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCAAGTGGAAAGCTCTC
droSec2 scaffold_0:20818669-20818825 + dse_60 confident CAGGAGCGCGAGGATGAGATGCGAGAACTGGCACTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCGAGTGGAAAGCTCTC
droYak3 3R:26013166-26013322 - dya_39 confident CAGGAGCGCGAGGACGAGATGCGTGAACTGGCTCTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGTCGTGAGCTGCGACACAAATATGGAACGCCCTCGAGTGGAAAGCTCTC
droEre2 scaffold_4820:7574063-7574219 - der_58 confident CAGGAGCGCGAGGACGAGATGCGTGAACTGGCCCTGAAACTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAGTACGGAACGCCCTCGAGTGGAAAGCTCTC
dp5 2:1751523-1751682 - dps_246 confident CAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTT------G---GTC--AGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCGGCACAAGTACGGCACGCCCTCCAGTGGCAAGCTGTC
droPer2 scaffold_7:1904934-1905093 - dpe_337 confident CAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTT------G---GTC--AGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCGACACAAGTACGGCACGCCCTCCAGTGGCAAGCTGTC
droWil2 scf2_1100000004902:9616786-9616946 - dwi_34 confident CAGGAGCGTGAAGATGAGATGAGAGAATTGGCGCTAAAGTTGCGCCGTAGGTGAGTATC-GGGTTGTGATTGGCTCCT------TGTGG-T--AGTCCTCTCACATCTCTATATTCACAGGCGTCGCGAGCTGCGTCACAAATATGGAACACCCTCTAGTGGTAAATTGTC
droVir3 scaffold_13047:780897-781055 + dvi-mir-1003 Known_mirbase CAGGAACGCGAGGATGAGATGCGCGAGCTCGCGCTAAAGCTGCGTCGTAGGTGAGTAAT-CAGTTGTGGGTGGCTTTT------T---GAA--AGCCCTCTCACATCTCTTTATTCACAGGCGGCGTGAGTTGCGGCACAAATATGGAACGCCGTCCAGCGGCAAACTCTC
droMoj3 scaffold_6540:4775633-4775791 + dmo_29 confident CAGGAGCGCGAGGACGAGATGCGCGAGCTGGCGCTCAAGCTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTCTA------G-----TGAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGAGAGTTGCGCCACAAGTACGGCACGCCGTCCAGTGGCAAGCTCTC
droGri2 scaffold_14906:5529249-5529415 - dgr_13 confident CAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAATTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTTTTGTTCTTA-GGGAA--AGCCCTCTCACATCTCTTTATTCACAGGCGGCGCGAATTGCGCCACAAATATGGAACGCCCTCCAGTGGCAAACTCTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CAGGAGCGGGAAGACGAGATGCGCGAACTGGCGCTCAAGCTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTTA-----TTTGGCC--GGTCCTCTCACATCTCCATATTCACAGGCGTCGAGAGCTGCGCCACAAGTATGGTACGCCCTCCAGCGGAAAACTTTCSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................................................TCTCACATCTCCATATTCACAG...................................................2212399.0023991838296108511294
..................................................................................................TCTCACATCTCCATATTCACA....................................................211983.009835263037047829
..................................................GTGAGTATAGTGGATGTGGGTGG..................................................................................................231683.00683114503176385
..................................................................................................TCTCACATCTCCATATTCACAGT..................................................231593.0059326015125753349
..................................................................................................TCTCACATCTCCATATTCAC.....................................................201316.0031679202128114
...................................................................................................CTCACATCTCCATATTCACAG...................................................211118.0011811620000
..................................................................................................TCTCACATCTCCATATTCACAGTT.................................................24182.0082421138216
..................................................................................................TCTCACATCTCCATATTCACAGC..................................................23164.00642610100
..................................................................................................TCTCACATCTCCATATTCACAGA..................................................23162.006219401002
..................................................GTGAGTATAGTGGATGTGGGTGGT.................................................................................................24153.005370001333
...................................................................................................CTCACATCTCCATATTCACA....................................................20138.00383620000
...................................................................................................CTCACATCTCCATATTCACAGT..................................................22130.00302520021
..................................................................................................TCTCACATCTCCATATTCACAA...................................................22128.00288181100
...................................................TGAGTATAGTGGATGTGGGTGG..................................................................................................22124.00248001213
..................................................GTGAGTATAGTGGATGTGGGT....................................................................................................21122.0022441067
..................................................................................................TCTCACATCTCCATATTCACAGTA.................................................24121.00213180000
..................................................GTGAGTATAGTGGATGTGGGTG...................................................................................................22120.0020300089
..................................................................................................TCTCACATCTCCATATTCA......................................................19117.0017450602
..................................................GTGAGTATAGTGGATGTGGG.....................................................................................................20117.00172200103
..................................................................................................TCTCACATCTCCATATTCACAC...................................................22112.0012363000
...................................................................................................CTCACATCTCCATATTCAC.....................................................19111.0011830000
..................................................................................................TCTCACATCTCCATATTCACAGTAA................................................25110.0010190000
..................................................GTGAGTATAGTGGATGTGGGTGT..................................................................................................23110.0010200026
..................................................GTGAGTATAGTGGATGTGG......................................................................................................19110.0010010018
....................................................................................................TCACATCTCCATATTCACAG...................................................2019.009520002
..................................................................................................TCTCACATCTCCATATTCACAT...................................................2218.008206000
...................................................TGAGTATAGTGGATGTGGGTGGT.................................................................................................2318.008000017
...................................................................................................CTCACATCTCCATATTCACAGTT.................................................2317.007500002
.................................................................................................CTCTCACATCTCCATATTCACAG...................................................2316.006510000
.....................................................................................................CACATCTCCATATTCACAG...................................................1916.006420000
...................................................TGAGTATAGTGGATGTGGGT....................................................................................................2015.005011111
....................................................................................................TCACATCTCCATATTCACAGT..................................................2115.005400100
...................................................TGAGTATAGTGGATGTGGGTG...................................................................................................2115.005010004
..................................................................................................TCTCACATCTCCATATTCACAGG..................................................2315.005410000
...................................................................................................CTCACATCTCCATATTCACAGA..................................................2214.004400000
......................................................GTATAGTGGATGTGGGTGG..................................................................................................1914.004300010
..................................................................................................TCTCACATCTCCATATTCACC....................................................2113.003002001
....................................................................................................TCACATCTCCATATTCACA....................................................1913.003110100
.................................................................................................CTCTCACATCTCCATATTCACA....................................................2213.003030000
....................................................GAGTATAGTGGATGTGGGTGG..................................................................................................2113.003000003
..................................................................................................TCTCACATCTCCATATTCACAGAA.................................................2413.003120000
...................................................TGAGTATAGTGGATGTGGG.....................................................................................................1912.002000002
..................................................GTGAGTATAGTGGATGTGGGTGGA.................................................................................................2412.002000011
..................................................................................................TCTCACATCTCCATATTCACG....................................................2112.002020000
......................................................................................................ACATCTCCATATTCACAGT..................................................1912.002010001
.....................................................................................................CACATCTCCATATTCACA....................................................1812.002110000
.................................................................................................CTCTCACATCTCCATATTCACAGT..................................................2412.002110000
.................................................................................................CTCTCACATCTCCATATTCACAGTT.................................................2512.002110000
..................................................................................................TCTCACATCTCCATATTCACAGTTA................................................2512.002110000
.....................................................................................................CACATCTCCATATTCACAGT..................................................2012.002110000
.................................................................................................CTCTCACATCTCCATATTCA......................................................2011.001010000
.........................................................................CTCTTA-----TTTGGCC--GGTCC.........................................................................1811.001010000
..................................................................................................TCTCACATCTCCATATTCAA.....................................................2011.001000100
....................................................................................................TCACATCTCCATATTCAC.....................................................1811.001100000
..................................................................................................TCTCACATCTCCATATTCACAGTG.................................................2411.001010000
...................................................TGAGTATAGTGGATGTGGT.....................................................................................................1911.001000010
.................................................................................................CTCTCACATCTCCATATTCACAGA..................................................2411.001010000
..................................................................................................TCTCACATCTCCATATTC.......................................................1811.001100000
..................................................GTGAGTATAGTGGATGTGGGTGGC.................................................................................................2411.001000001
..................................................................................................TCTCACATCTCCATATTCACATAA.................................................2411.001001000
.......................................................................................................CATCTCCATATTCACAGT..................................................1811.001100000
...........AGACGAGATGCGCGAACTGGC...........................................................................................................................................2111.001010000
..................................................GTGAGTATAGTGGATGTGGGTGGG.................................................................................................2411.001100000
..................................................................................................TCTCACATCTCCATATTCACAAA..................................................2311.001100000
................................................................................................................................AGCTGCGCCACAAGTATGGTAC.....................2211.001100000
..................................................................................................TCTCACATCTCCATATTCACAAC..................................................2311.001010000
..................................................GTGAGTATAGTGGATGTGGGTT...................................................................................................2211.001100000
...................................................TGAGTATAGTGGATGTGGGTA...................................................................................................2111.001100000
..................................................................................................TCTCACATCTCCATATTCACATT..................................................2311.001001000
..................................................................................................TCTCACATCTCCATATTCG......................................................1911.001100000
droBip1
CAGGAGCGCGAAGACGAGATGCGTGAACTGGCGCTAAAGTTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTAA---A-TATGGCC--AGTCCTCTCACATCTCCATATTCACAGGCGTCGCGAGCTGCGCCACAAGTATGGCACGCCCTCCAGCGGCAAACTGTCSizeHit CountTotal NormTotal
No Reads
droKik1
CAGGAGCGAGAGGACGAGATGCGGGAGCTGGCGCTGAAACTGCGTCGAAGGTGAGTATTGTGGGTGTGGGTGGCTCTG------G-CGGCC--AGTCCTCTCACATCACCATATTCACAGGCGTCGCGAGCTACGCCACAAATACGGCACGCCCTCCAGCGGAAAGCTCTCSizeHit CountTotal NormTotal
No Reads
droFic1
CAAGAGCGCGAGGACGAGATGCGTGAACTGGCGCTGAAGCTGCGCAGAAGGTGAGTATC-TGGATGTGACTGGCTCTT------G-----C--GGTCCTCTCACATCTAGTTATTCTCAGGCGCCGTGAGCTGCGACACAAATACGGAACGCCATCGAGCGGCAAGCTATCSizeHit CountTotal NormTotal
No Reads
droEle1
CAGGAACGTGAGGACGAGATGCGCGAACTGGCGCTGAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTTGGCTCTT------C-TGG-G--CGTCCTCTCACATCTACATATTCACAGGCGGCGTGAGCTGCGCCACAAGTATGGGACCCCTTCGAGCGGCAAGCTCTCSizeHit CountTotal NormTotal
No Reads
droRho1
CAGGAGCGTGAAGACGAGATGCGTGAACTGGCGCTGAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTCGGCTTTA------G-----C--GGTCCTCTCACATCTACATATTCACAGGCGCCGTGAGCTGCGTCACAAGTATGGTACACCCTCGAGTGGAAAGCTGTCSizeHit CountTotal NormTotal
No Reads
droBia1
CAGGAACGCGAGGACGAGATGCGTGAGCTGGCGCTGAAGCTGCGCAGAAGGTGGGTATT-TTGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATCTATATATTCACAGGCGTCGTGAGCTGCGGCACAAATATGGCACGCCCTCCAGCGGCAAGCTCTCSizeHit CountTotal NormTotal
No Reads
droTak1
CAGGAGCGCGAGGACGAGATGCGTGAGCTGGCGCTGAAGCTGCGCAGGAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATCTACATATTCACAGGCGTCGTGAGCTGCGACACAAATACGGAACGCCCTCGAGCGGCAAGCTTTCSizeHit CountTotal NormTotal
No Reads
droEug1
CAGGAGCGTGAGGACGAGATGCGTGAGTTGGCTTTGAAGCTGCGCAGGAGGTGGGTATC-TTGATGTGGTTGGCTCCG------G-----C--TGTCCTCTCACATCTGTATATTCACAGGCGTCGTGAGCTGCGTCACAAGTATGGAACGCCCTCAAGCGGCAAGCTGTCSizeHit CountTotal NormTotal
No Reads
dm3
CAGGAACGCGAGGATGAGATGCGCGAACTGGCCCTCAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCGAGTGGAAAGCTCTCSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................................................................................................TCTCACATTTACATATTCACAG...................................................22170566.007056600003711242551712421347101410123314303386928242354411122211131813453136354223369773470002061225400000000000000000476461351401371969712018649689043177433032323035036033432214330237338740757870129362618916945259124521125770118711107631020420391170100010432201224341798863425151141023223481050515118116279591133570370148269404322621249738487361666111209013834371200025242200000914000000243032581064116149144848217537834910783980518115335349148700003818224164120084197191389253022135166680155854165971644327240101360089411433362452198587167530334422821216257658718326913752316214147501727641527152163020316213223222594254320464142091120
..................................................................................................TCTCACATTTACATATTCACA....................................................21131735.003173500003341432456220001000160120066051231041334112632310235483107111373000126200000000000000000314327259223468521776311646534326331691472371179135174531992275102767765015544749218322374422103212101751777881837220962642142425800000000701015161184261099444446122300143451404102971095630464603484501232776416894504012920119415828120005063200000061000006192109447255581621543671670216427118213034512770000231811126822003341773055775096474521017825176329475241048115414283184282661732027603103666650347428712315566654109127710636131379815313841511201512233311141436102515323156511773041122340
..................................................GTGGGTATC-TGGATGTGGTTGG..................................................................................................22129033.00290330000100320100201000002120120100000264115331612001151834050039011000000000000000000120002916027121136422211812434052218040768568111312949202100010001103000010000006763372526391523185127158142701810037131013550210060423313570600201241011010301073440125930310015415766244179178920102535142229164030600000131001310019022285351343514966698215474247331741528840371387687192877452252193352221288916626198322823606463332199881437217133693408542472245418315578611659989184226415342283281310671962227129327119696036962833986655812010
..................................................................................................TCTCACATTTACATATTCACAGT..................................................23118392.0018392000001223105050000005112001810000000214121021332754124311124305066307000000000000000000000009770616601713414371247422229487202000324125075164281131212631677244018401062716020150000000000750104100402311464634873397674290000097811983233417021003181110374321901831604312363024000200141500000191800000011268496751644801663565124107719243016426162000016717740627910478373511624433421532877422980961132024205276252168372405874192395112349014411696944030354606159844812121393213324032657368913134265591223701301101066104506667651813629278581304223022200
..................................................GTGGGTATC-TGGATGTGGTTG...................................................................................................2117808.00780800000023000100100000242400200000001652201131310031351144200100000000000000000000000116433104316002006113006820165249574613413402000000001000000012000029470219162617175252114141202150649040201000302100120271303426000004901050510000005862241016093343588845200500007400014517131146141233623282221817355954192210232584726723215026425612334311915123278202823515664608291314318819901724519761891341213032454694817739319430723760471235423101629176100155212630
..................................................................................................TCTCACATTTACATATTCAC.....................................................2014417.00441700009100000104100200000200200464760010000000310120001201000310000000000000000001331321047615817678845854194741153156620283910877011123079202535702542033002022306879474000000000001000000003000000000383555141163210301000066854650150314910115400234401000010000000000000000234200032837875202719809922137000000012392403613503743031062125524283110344001512211013518151412103320000001220001010010000000100001220430
...................................................................................................CTCACATTTACATATTCACAGT..................................................2212815.0028150000000000000000000001010334000000000000102900130426310000000000000000000000094730203211218204504104003101318172205010013010110101010220000000000031604104231210580000016033033106106612051130015406841400020100000000000000383682511231119301956243674250000610027152722027111421418017510146813389658109642781152079779566725173952131481514132137121316351113504611603747631385457423030211612233410371980
..................................................................................................TCTCACATTTACATATTCACAGA..................................................2311590.001590000010000001010000000003001000000000100000000100112110000000000000000000000026221870450066210110321200140071029122211006041000201051480000000000000000301050012000006070009160130071206015125102000222110000001000000010000004300100149329514023743104175330038000011000211301100001201100004010085330810328145170051122341000000101000013100401100002000000000007230
..................................................................................................TCTCACATTTACATATTCA......................................................1911577.001577000000000000000000000000000002294710100000000000000000000010000000000000000000303721141010500108134161030470033193242864174162140250237450321147163350000000000000000000010000000008014100101020520047502330134011120317001510000000000000000000000000110010000010025004000000002000000016231261512004129084522100010000442183611140010600000000000000010000000000010000003000
..................................................GTGGGTATC-TGGATGTGGTTGGT.................................................................................................231804.00804000000000000000000001100000000000000000000000000101100000000000000000000000000000001000100200100000000005951001000000000000000001000000000000240001100000410002100000000000000000001000010002000000102000000000000500111510020102223102000001000423001018014212713513482541210110000080110942125000390184152111501315231737227161546412624824269103141410112440
..................................................................................................TCTCACATTTACATATTCACAC...................................................221739.0073900000000100100000000000000000000000000200100000000300000000000000000000000004123137051365101301160001203251740112300120200200000003100000000000000002100000000000050702018040001000301000700000010000000000000000000000001101042975668717368111101800000000000000001000010300000001003110120015040010100002000000300000000012300000000000000000000000
..................................................GTGGGTATC-TGGATGTGGTT....................................................................................................201652.0065200000000000000000000000000000000006501000000010100011000000000000000000000000000000002003002000000002000037400000001000000000000000001000000000001114100005100200001300100000000110110000000100000000010000000000003152851224131203200000001000000010000620200100144041129836411000000231207214260102612541005123361661615144621137318227512420118891240
..................................................................................................TCTCACATTTACATATTCACAT...................................................221412.00412000010000000100000000001010000000000001005000000000000000000000000000000000021230114601529010173032110000004746100000030010000010618900000000000000121210202002100020300160304004300000100220030010000000000000000000000210100987265513210316110010010013200000002201104100102112331130112020220400001000010000000000000000000000000000000110000
...................................................................................................CTCACATTTACATATTCACAG...................................................211401.004010000000000000100000000000010000000100000000000000000000010100000000000000000300420000213201102232200173131220174407013402000000000021000000000000000011000000000000300000511010002414051110020001300000000000000000000000002001001748722114191224800000000003000010000000200200007034320140504043110110000000000000000031000000000001000000000009220
..................................................................................................TCTCACATTTACATATTCACAA...................................................221368.003680000437401130400000000020000000000000000000000010000000000000000000000000000221441251098000412033214004504528060034002103100000001020000000000000000100000000000000200084060500060505020003006000000000000000001000000000000091298911222310300000000000020010000000000001000044500430023110000100000000000000000102000100000000100000000001020
..................................................GTGGGTATC-TGGATGTGGT.....................................................................................................191313.0031300000000000000000000001000001000004110100100000000001000000000000000000000000000000000010000000000000000330010000100000000000000000000000000000014110002000300100010001000000101000500000001000000000000000000200010051101002020000010000000011111000133001020202702914221100000300014010001221012017416121000161211132626141321523421101472350
..................................................GTGGGTATC-TGGATGTGG......................................................................................................181267.002670000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000100011300000000000000000000000000000000010020010001200010010000000000000000100000000000000000000020000000000000204411000120020000000000000000101002000000000050210000100000000011111220026110900709000000077651139113101622512010000148410
...................................................................................................CTCACATTTACATATTCACA....................................................201200.00200000000000000000000000000000000000000000000000000000000001000000000000000000021110000004210000051100024049510000000001301001200042000000000000000000000000000000000100860600210012070900000014000000000000000000000000022010011113026102200000000000000000200410310011004041040000102000000001020000000000000011000100000000100000000012020
..................................................................................................TCTCACATTTACATATTCACAGC..................................................231199.00199000000000000000000000000000000000000002000100000011100000000000000000000000002100000000000010002000104023301100000100100000100001000000000000010000010000000000000000010000010110001000000000000000000000000000000000000081565034300300000000001100000001010001000101032010312042332272150210020000000301000001000010100000000000010013200
....................................................................................................TCACATTTACATATTCACAG...................................................201199.00199000000000000000000000200000000000000100101100101030000000000000000000000000014920000001000000000000000030400000100001000000001010000000000000100030000030300100002000020000040201000010000000000000000000000000000000000131643128126700200000000001010000100100010102106019600020010200000101000000000100000000000111000100000000000020000
..................................................GTGGGTATC-TGGATGTGGTTGT..................................................................................................221160.001600000000000000000000000000000000000000000010000100010000000000000000000000000001000020002001000000000000101001000000000000000000000000000000000140020000000000000020000000000000010110000000000000001000000000000000003100000000000000000000000139010001113803010100031110000000010021302100150006010140200000231331005634212302200304300
..................................................................................................TCTCACATTTACATATTCACC....................................................211137.0013700000000000000000000000000000000000000000000000000010000000000000000000000001100100020100001010001000002110000000002111400020202301420000000000000000000000000000000000020010500000001010010001000000000000000000000000000000000010000000100000000012110110000420100000001002010000001000000000000000100000000010000000000000000000000000000
..................................................GTGGGTATC-TGGATGTGGTTGGA.................................................................................................231130.0013000000000000000000000000000000000000010000000000000100000000000000000000000000000000400000000000000000000100000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000001001001010000001000000000000100000100021111400210000001000100002060000100080011303000205112114161131212630001413210
...................................................................................................CTCACATTTACATATTCACAGA..................................................221123.001230000000000000000000000000010000000000000000001000000000000000000000000000000011100000011000000010000001831000000000000000000000000000000000000000000000000000000000002102000000011000000040000000000000000000000001000000502572591001700000000001000000000010000001003020100000006021020200010000100100000002000200100100100000000021020
..................................................................................................TCTCACATTTACATATTC.......................................................181122.001220000000000000000000000000002101110000000000000000000000000000000000000000000307400000020011000400000220202211000004010000000058880034000000000000000000000000000000000201120101170100000016000000000000000000000000003000000010000000000000000000000000000010000000000001000000000000010000100000000000000000000000000000000000000000000
....................................................................................................TCACATTTACATATTCACA....................................................191103.00103000000000000000000000000001000000000000000001000010000000000000000000000000001310000000100000010000000050300000000001000010000010000000000000000010000000010000100000010000021102000000000000000000000000000000000100000016100212400100001000002450000001330101100213069301000001000010110000000000000000000000100001000000000000000000
..................................................GTGGGTATC-TGGATGTGGTTGGC.................................................................................................231101.00101000001000000000000000000000000000000000000000010000000000100000000000000000000010000000000000000000000001200000000000000000000000000021000000000001002000000000000100000000000000010000000010000010100000000000000000200100111200000000000100011000000110200100000000000101000000002010000002000400143141300033011401521312312111200100
....................................................................................................TCACATTTACATATTCACAGT..................................................21198.0098000000000000000000000100004000000000000100102101001210000000000000000000000000000000000000000000000000000100000000000000000000000000000000001100012001102100000200000000000000000000000000000000000000000000000000000000020000023000100000000000130000100200101201104120311120100443020010010000000000011000000313200201100000000011010
..................................................................................................TCTCACATTTACATATTCACATT..................................................23191.0091000000000000000000000000003000000000001101000100000000000000000000000000000010300130103000300000000000000000000000000000000000000000000000000400000022000100100001002000000000000000000000000000000000000011000000221000020000000110200000000000020000000440505000100000220110101010250410000000000000000000000000100000000000000000000
...................................................TGGGTATC-TGGATGTGGTTGG..................................................................................................21183.0083000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000102000010000000000000000000000000000000010100100000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000100010000001000001010000000000010000000000200203011001005362818551241000000113010
..................................................................................................TCTCACATTTACATATTCACAGG..................................................23171.00710000000000000000000000000000000000000000000000000000000012720000000000000000010100000000000010000000000000110000000000000010000000000000000000000000000000000000100000000000000001001000002000100000000000000000000000000000101002002100000000000000000000000110000000000100040004450020201100000000000000000000000000200000000000002010
..................................................GTGGGTATC-TGGATGTGGTTT...................................................................................................21171.0071000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000000000000000000020000000000000000100001000000000000100010010000000000000000001000000000000000000000010020110001100000000001000002310000211020303110014111020000000000000100001000102011010100000011301200002010001020000
..................................................................................................TCTCACATTTACATATTCACAGTT.................................................24168.0068000000000000000000000000000000000000000000200000000000000000000000000000000010100000000000000000000000044260000000000000000002010000000000000100010000000000000000000000100010000000000000101000000000000000000000000000120121021100000000000001000000000000101000200020100100113040020010100000000000000000000010100000000101000001010
..................................................GTGGGTATC-TGGATGTGGTTGGTA................................................................................................24165.0065000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030011000010110000000000100000100000000010000000000000000000000000020100000010800115010000110120601550101401010111000
....................................................GGGTATC-TGGATGTGGTTGG..................................................................................................20158.0058000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000010010000000000000001010100101010200001000020100000000000110200000000302003000100000050213303210100100041100
..................................................GTGGGTATC-TGGATGTGGTTGC..................................................................................................22154.0054000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000102110000000000110000000100100130100000000400024011010010201301511300000000102010
..................................................................................................TCTCACATTTACATATTCACG....................................................21150.0050000000000000010000000000000000000000000000000000000000000000000000000000000010000000021001000000000011001030000000000000000000010000000000000000000000000000000000000110400120001020000006000000000000000000000000000000000000000100200000000011320000000000000000000101010020000010000201000000000000000000000000000000000000000000000
..................................................................................................TCTCACATTTACATATTCAG.....................................................20144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000200000000000000000000000000000000000000000000000020000000010000000000000000000000000000000321492113000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000
.................................................................................................CTCTCACATTTACATATTCACAG...................................................23142.0042000000000000000000001100000000000000000000000000000000000000000000000000000001110000000000000000000000000002000000000000000000000000000000000000001001000000000000000010010020201000000000000000000000000000000000000000021015122000100000000001000000000000000100000100000121010100000100000000000000000000000000000010000000000000000
..................................................................................................TCTCACATTTACATATTCACACT..................................................23140.0040000000000000000000000000000000000000001001100000002000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000020310002000000000000000000000000210204000000010130020001211010000000000001000000000000000000000000000000000000
..................................................GTGGGTATC-TGGATGTGGTTGA..................................................................................................22137.0037000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000110000010000000001001001100000300000100100004000302102000000022000201110000100000000000
...................................................TGGGTATC-TGGATGTGGTTG...................................................................................................20132.0032000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000000000000000100100000000001000000000000010000000000000000004000000000000000000000300001000000010000000000100311302200000000100000
..................................................................................................TCTCACATTTACATATTCACAGAA.................................................24132.0032000000000000000000000000000000000000000000000000000000000000000000000000000000020400010000000110000000001100001000000000000000020000000000000000000000000000000000000000000000102000000000100000000000000000000000000000001011222000000000000000000000000000000000000001000000010000000100001000000000000000000000000000000000000001000
......................................................................................................ACATTTACATATTCACAG...................................................18132.0032000000000000000000000000000000000000000000000000000100000000000000000000000033120000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100010201100000000000000000000000000000000000000000030010200000000000000000000000000000000000001110001000020000000000000000000000010000000100000000000000001000
..................................................................................................TCTCACATTTACATATTCACAGATC................................................25131.003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TCTCACATTTACATATTCACT....................................................21131.0031000002000000000000000000000000000000000000000000000000000000000000000000000010000101000000010000000000010001000000010000000101001000000000000000000000000000000000001050200010000000000000000000000000000000000000000000000000000000000000000000320000100000000100001001010000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTCACATTTACATATTCAC.....................................................19130.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000010003000001000000000000000000000000000000000000000000000000000000100200220102000010009000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..................................................................................................TCTCACATTTACATATTCACAGTAA................................................25129.0029000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000000022232216000000000000000000000000000000000000000000100000110000000001000000001000000000000000000000000001000000
..................................................................................................TCTCACATTTACATATTCACAGTA.................................................24128.0028000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010000000002005000000001000000001000000000000000000000100000000000000000000100000100000000000000000000000000000000000000000012204101000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000010000000
..................................................................................................TCTCACATTTACATATTCACACC..................................................23128.0028000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000062225003000100000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000010
..................................................GTGGGTATC-TGGATGTGGTTGGCT................................................................................................24126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000093000000000010000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000000000000000100111000000020000100210100000
..................................................GTGGGTATC-TGGATGTGGTTGGG.................................................................................................23123.0023000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000100001201000000000000000000000000000001000000000200011113000011000000021000000000000000
.................................................................................................CTCTCACATTTACATATTCACAGT..................................................24123.00230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000112020000100200000000100000000000000000000000000000000000
...................................................................................................CTCACATTTACATATTCACATT..................................................22123.0023000000000000000000000000002000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000000050000000000000000000000000000000000000000000000000000010000000000000002000000010000000000300000000001110000000000000200000000100000000000000000000000000000000000100
..................................................................................................TCTCACATTTACATATTCACAAA..................................................23222.5045000000000000000000000000000000000000000000000000000000000000000000000000000000000300040000120001200011101000001000000000000000000000000000000200001000000000000000000000100000000000000002001000000100000000000000000000050003017000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000
..................................................................................................TCTCACATTTACATATTCAA.....................................................20122.0022000010000000000000000000000000000000000000000000000000000000000000000000000000010000000000010010100000102000000000500000000000020000000000000000000000000000000000000010000000003000000001000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTCACATTTACATATTCACAGC..................................................22122.0022000000000000000000000000000000000000000000000000111000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000100000000100000000000000001000000000000000000000000000100000010000000000000000000000000000010000000002000100000000010110000000101000000000000000000100000000000100000000
......................................................................................................ACATTTACATATTCACAGT..................................................19120.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001010000130202020020000010000100000000000000000000000000000000000000
.....................................................................................................CACATTTACATATTCACAG...................................................19119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000120000101000000000000000010100000000000000000000010000000000000000010100000000000000000010000001200000000000000000010000000000000000000000000000010100000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000
..................................................................................................TCTCACATTTACATATTCACACA..................................................23118.0018000000000000000000000000000000000000000000000000001000000000000000000000000000000000010010000002000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032110200100000000001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.................................................................................................CTCTCACATTTACATATTCACA....................................................22118.0018000000000000000000000000000000001000000000000000001000000000000000000000000000210000000000000000000000000000000000000100000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000004000000100002000000000000000000000000000000000000000000000000000000100000000000000000000000101000000000000000000000
..................................................GTGGGTATC-TGGATGTGGTTGGCTC...............................................................................................25117.0017000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000010000030000000000000000000000000000000000000001000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000010000000010000000000000000200000100100010000000
....................................................GGGTATC-TGGATGTGGTTG...................................................................................................19116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000015100000000000000000000500000000100000000000000000001000000000000010000
..................................................GTGGGTATC-TGGATGTGGTTTT..................................................................................................22116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011100001000160101000000001000000000000000001001000000000000000000000000000000000000000000
droSim2
CAGGAGCGCGAGGATGAGATGCGCGAACTGGCACTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCAAGTGGAAAGCTCTCSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..................................................................................................TCTCACATTTACATATTCACAG...................................................2217869.0078691186891090631479243926841825137664423074000
..................................................................................................TCTCACATTTACATATTCACA....................................................2112016.002016108335232285952003422081883137216000
..................................................................................................TCTCACATTTACATATTCACAGA..................................................2311528.00152816483004705632961651002000
..................................................................................................TCTCACATTTACATATTCAC.....................................................201637.0063730132134413171210131001000
..................................................................................................TCTCACATTTACATATTCACAGT..................................................231519.0051917512200981281017668516000
..................................................................................................TCTCACATTTACATATTC.......................................................181244.0024410005718600000000000
..................................................................................................TCTCACATTTACATATTCA......................................................191233.0023390015116305130000000
..................................................GTGGGTATC-TGGATGTGGTTGG..................................................................................................221221.002213310010582071281179000
..................................................................................................TCTCACATTTACATATTCACAA...................................................221114.0011411100061942390005000
..................................................................................................TCTCACATTTACATATTCACAGAA.................................................24187.0087110000101942140000000
..................................................GTGGGTATC-TGGATGTGGTTG...................................................................................................21170.00700002105501337412000
...................................................................................................CTCACATTTACATATTCACAG...................................................21170.00705205213501000100000
..................................................................................................TCTCACATTTACATATTCACAC...................................................22166.00662042410034062011000
..................................................................................................TCTCACATTTACATATTCACAGTA.................................................24164.0064104000141817100000000
..................................................................................................TCTCACATTTACATATTCACAGGCGCC..............................................27125.00250000101500000000000
..................................................................................................TCTCACATTTACATATTCACAGG..................................................23122.002232401813000000000
..................................................................................................TCTCACATTTACATATTCACAGGCG................................................25121.0021000012000000000000
...................................................................................................CTCACATTTACATATTCACAGA..................................................22118.001811000058020100000
..................................................................................................TCTCACATTTACATATTCACAGAAA................................................25115.001500000015520002000
...................................................................................................CTCACATTTACATATTCACAGT..................................................22115.001510100031024300000
..................................................GTGGGTATC-TGGATGTGGTTGGT.................................................................................................23110.001000000001006003000
..................................................................................................TCTCACATTTACATATTCACAGC..................................................23110.001030100014100000000
..................................................................................................TCTCACATTTACATATTCACAAA..................................................2328.501700000015550001000
..................................................GTGGGTATC-TGGATGTGGTT....................................................................................................2017.00700010020103000000
..................................................GTGGGTATC-TGGATGTGGTTGGCTC...............................................................................................2517.00700000000000070000
..................................................GTGGGTATC-TGGATGTGGT.....................................................................................................1917.00700000200005000000
...................................................................................................CTCACATTTACATATTCACA....................................................2017.00700012400000000000
..................................................................................................TCTCACATTTACATATTCACAAAA.................................................2426.001200000012720000000
..................................................GTGGGTATC-TGGATGTGGTTGGC.................................................................................................2316.00610000100002011000
...................................................................................................CTCACATTTACATATTCAC.....................................................1915.00500002300000000000
..................................................................................................TCTCACATTTACATATTCACG....................................................2114.00410100002000000000
..................................................................................................TCTCACATTTACATATTCACAGTAA................................................2514.00400300010000000000
..................................................................................................TCTCACATTTACATATTCACAT...................................................2213.00300010001000100000
.................................................................................................CTCTCACATTTACATATTCACAG...................................................2313.00300001000001010000
..................................................GTGGGTATC-TGGATGTGGTTGGCT................................................................................................2413.00300000000001002000
..................................................................................................TCTCACATTTACATATTCACACT..................................................2313.00300000021000000000
..................................................................................................TCTCACATTTACATATTCAA.....................................................2013.00300000000300000000
..................................................................................................TCTCACATTTACATATTCACAGTT.................................................2413.00300000011000001000
........................................................................GCTCTG------G-----C--GGTCCTCTCAC...................................................................1912.00220000000000000000
..................................................................................................TCTCACATTTACATATTCACAGGC.................................................2412.00200000200000000000
..................................................................................................TCTCACATTTACATA..........................................................1512.00200000010100000000
..................................................................................................TCTCACATTTACATATTCACAGGCGC...............................................2612.00200000200000000000
....................................................................................................TCACATTTACATATTCACAGA..................................................2112.00200000010010000000
..................................................GTGGGTATC-TGGATGTGGTTGA..................................................................................................2212.00200000000000002000
......................................................................................................ACATTTACATATTCACAG...................................................1812.00200000000000101000
..................................................................................................TCTCACATTTACATATTCACATA..................................................2312.00200000001100000000
........................................................................GCTCTG------G-----C--GGTCCTCTCACATTT...............................................................2312.00210000000000001000
..................................................GTGGGTATC-TGGATGTGGTTGGTA................................................................................................2412.00200000000000101000
...................................................................................................CTCACATTTACATATTCACAGAA.................................................2312.00200000010100000000
..................................................GTGGGTATC-TGGATGTGG......................................................................................................1812.00200000000002000000
...................................................TGGGTATC-TGGATGTGGTTGG..................................................................................................2112.00200010000001000000
........................................................................GCTCTG------G-----C--GGTCCTCTCACATTTACAT...........................................................2712.00200000000000020000
.....................................................................................................CACATTTACATATTCACAG...................................................1912.00200000100001000000
....................................................................................................TCACATTTACATATTCACAG...................................................2012.00200001000000100000
...................................................................................................CTCACATTTACATATTCACAGTT.................................................2311.00100000010000000000
.................................................................................................CTCTCACATTTACATATTCAC.....................................................2111.00100000100000000000
.........................................................................................................TTTACATATTCACAG...................................................1521.00200000000002000000
....................................................................................................TCACATTTACATATTCACA....................................................1911.00100000100000000000
.............................GGCACTGAAGCTGCGC..............................................................................................................................1611.00100000000001000000
..................................................................................................TCTCACATTTACATATTCACAAT..................................................2311.00100000000001000000
......................................................................................................ACATTTACATATTCACAGT..................................................1911.00100000000001000000
...............................................................................................TCCTCTCACATTTACATATTCAC.....................................................2311.00100001000000000000
.................................................................................................CTCTCACATTTACATATTCACA....................................................2211.00100000000000001000
........................................................................GCTCTG------G-----C--GGTCCTCTCACATTTACATA..........................................................2811.00100000000000010000
..................................................................................................TCTCACATTTACATATTCAG.....................................................2011.00100100000000000000
...................................................................................................CTCACATTTACATATTCA......................................................1811.00100001000000000000
..................................................GTGGGTATC-TGGATGTGGTTGGCA................................................................................................2411.00100000000000001000
..............TGAGATGCGCGAACTGGCACTGAAGC...................................................................................................................................2611.00100000000001000000
..................................................GTGGGTATC-TGGATGTGGTTGGCTCTG------.......................................................................................2711.00101000000000000000
.......................................................................................................CATTTACATATTCACAG...................................................1711.00100000000001000000
.....................................................................................................CACATTTACATATTCACAGT..................................................2011.00100000000001000000
...................................................TGGGTATC-TGGATGTGGTTGGC.................................................................................................2211.00100010000000000000
..................................................................................................TCTCACATTTACATATTCACAGGA.................................................2411.00100000000100000000
........................................................................GCTCTG------G-----C--GGTCCTCTCACATTTACA............................................................2611.00100000000100000000
..................................................GTGGGTATC-TGGATGTGGTTGGG.................................................................................................2311.00100000000000001000
........................................................................................................ATTTACATATTCACAG...................................................1611.00100000001000000000
......................................................GTATC-TGGATGTGGTTG...................................................................................................1711.00100000000001000000
..................................................................................................TCTCACATTTACATATTCACGA...................................................2211.00100000001000000000
..................................................GTGGGTATC-TGGATGTGGTTC...................................................................................................2111.00100000000001000000
.....................................................GGTATC-TGGATGTGGTTGG..................................................................................................1911.00100000000001000000
..................................................................................................TCTCACATTTACATAT.........................................................1611.00100000010000000000
..................................................GTGGGTATC-TGGATGTGGTTGGGG................................................................................................2411.00100000000001000000
...................................................................................................CTCACATTTACATATTCACAGTA.................................................2311.00100000010000000000
..................................................GTGGGTATC-TGGATGTG.......................................................................................................1720.50100000000001000000
..................................................................................................TCTCACATTTACATATTCACACAA.................................................2440.25100000000100000000
..........................................................C-TGGATGTGGTTGGA.................................................................................................15190.05100000001000000000
droSec2
CAGGAGCGCGAGGATGAGATGCGAGAACTGGCACTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCGAGTGGAAAGCTCTCSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..................................................................................................TCTCACATTTACATATTCACAG...................................................2211542.001542144055146
..................................................................................................TCTCACATTTACATATTCACA....................................................211544.00544435122473
..................................................GTGGGTATC-TGGATGTGGTTGG..................................................................................................221234.00234154513341
..................................................................................................TCTCACATTTACATATTCACAGT..................................................231169.0016997133920
...................................................................................................CTCACATTTACATATTCACAG...................................................211110.00110109010
..................................................................................................TCTCACATTTACATATTCAC.....................................................20174.007467007
..................................................GTGGGTATC-TGGATGTGGTTG...................................................................................................21162.00626202313
..................................................................................................TCTCACATTTACATATTCACAGA..................................................23141.004136005
...................................................................................................CTCACATTTACATATTCACA....................................................20135.003534001
...................................................................................................CTCACATTTACATATTCACAGT..................................................22130.003019353
..................................................................................................TCTCACATTTACATATTCACAC...................................................22121.002121000
..................................................................................................TCTCACATTTACATATTCA......................................................19116.001620014
..................................................................................................TCTCACATTTACATATTCACAGC..................................................2319.0099000
....................................................................................................TCACATTTACATATTCACAG...................................................2017.0077000
..................................................GTGGGTATC-TGGATGTGGTTGGA.................................................................................................2316.0061401
..................................................GTGGGTATC-TGGATGTGGTTGGT.................................................................................................2316.0060240
..................................................GTGGGTATC-TGGATGTGGTTGGC.................................................................................................2315.0050212
..................................................................................................TCTCACATTTACATATTCACG....................................................2114.0043010
...................................................................................................CTCACATTTACATATTCACAGA..................................................2214.0043100
..................................................................................................TCTCACATTTACATATTCACAT...................................................2214.0044000
......................................................................................................ACATTTACATATTCACAG...................................................1814.0044000
..................................................GTGGGTATC-TGGATGTGGTTGT..................................................................................................2213.0030210
..................................................GTGGGTATC-TGGATGTGGTT....................................................................................................2013.0030111
..................................................................................................TCTCACATTTACATATTCACAA...................................................2213.0033000
..................................................GTGGGTATC-TGGATGTGG......................................................................................................1813.0030012
...................................................................................................CTCACATTTACATATTCACAGTT.................................................2313.0032001
..................................................................................................TCTCACATTTACATATTCACAGCA.................................................2413.0031002
.................................................................................................CTCTCACATTTACATATTCACAG...................................................2313.0033000
...................................................................................................CTCACATTTACATATTCAC.....................................................1913.0033000
...................................................TGGGTATC-TGGATGTGGTTGGT.................................................................................................2212.0022000
..................................................GTGGGTATC-TGGATGTGGTTGA..................................................................................................2212.0020101
....................................................................................................TCACATTTACATATTCACAGT..................................................2112.0021010
..................................................................................................TCTCACATTTACATATTCACAGTT.................................................2412.0021001
.....................................................................................................CACATTTACATATTCACA....................................................1812.0022000
....................................................GGGTATC-TGGATGTGGTTGG..................................................................................................2012.0021001
..................................................................................................TCTCACATTTACATATTCACAGG..................................................2311.0011000
..................................................................................................TCTCACATTTACATATTCACATT..................................................2311.0010001
...................................................TGGGTATC-TGGATGTGGTTGG..................................................................................................2111.0010001
....................................................................................................TCACATTTACATATTCACA....................................................1911.0010001
..................................................................................................TCTCACATTTACATATTCACACC..................................................2311.0011000
...................................................TGGGTATC-TGGATGTGGT.....................................................................................................1811.0011000
..................................................GTGGGTATC-TGGATGTGGTTGCA.................................................................................................2311.0010100
...................................................................................................CTCACATTTACATATTCACAC...................................................2111.0011000
..................................................GTGGGTATC-TGGATGTGGTTGGTA................................................................................................2411.0010001
..................................................................................................TCTCACATTTACATATTCACACA..................................................2311.0011000
..................................................GTGGGTATC-TGGATGTGGTTT...................................................................................................2111.0011000
...................................................................................................CTCACATTTACATATTCACAGTAA................................................2411.0011000
..................................................GTGGGTATC-TGGATGTGGTTGGCT................................................................................................2411.0010100
..................................................................................................TCTCACATTTACATATTCACACT..................................................2311.0011000
....................................................................................................TCACATTTACATATTCAC.....................................................1811.0011000
...................................................................................................CTCACATTTACATATTCACAGC..................................................2211.0011000
..................................................................................................TCTCACATTTACATATTCACAGAA.................................................2411.0011000
..................................................GTGGGTATC-TGGATGTGGT.....................................................................................................1911.0010001
..................................................................................................TCTCACATTTACATATTCAGT....................................................2120.5010010
droYak3
CAGGAGCGCGAGGACGAGATGCGTGAACTGGCTCTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGTCGTGAGCTGCGACACAAATATGGAACGCCCTCGAGTGGAAAGCTCTCSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..................................................................................................TCTCACATTTACATATTCACAG...................................................2211814.0018144601274332761121000
..................................................................................................TCTCACATTTACATATTCACA....................................................211864.00864497241634181940000
..................................................................................................TCTCACATTTACATATTCACAGT..................................................231173.001736115161141290000
...................................................................................................CTCACATTTACATATTCACAG...................................................211129.001291127100000000
..................................................................................................TCTCACATTTACATATTCAC.....................................................201102.001021287200100000
...................................................................................................CTCACATTTACATATTCACA....................................................20179.0079079000000000
..................................................GTGGGTATC-TGGATGTGGTTGG..................................................................................................22174.00740839171540000
..................................................GTGGGTATC-TGGATGTGGTTG...................................................................................................21136.00361213140420000
...................................................................................................CTCACATTTACATATTCACAGT..................................................22133.0033119442210000
..................................................................................................TCTCACATTTACATATTCACAC...................................................22114.001467100000000
..................................................................................................TCTCACATTTACATATTCACAGA..................................................23113.0013111000100000
....................................................................................................TCACATTTACATATTCACA....................................................19111.0011010000100000
....................................................................................................TCACATTTACATATTCACAG...................................................2018.00808000000000
..................................................................................................TCTCACATTTACATATTCACAA...................................................2218.00808000000000
..................................................................................................TCTCACATTTACATATTCACAT...................................................2217.00707000000000
..................................................................................................TCTCACATTTACATATTCACAGC..................................................2316.00611400000000
..................................................................................................TCTCACATTTACATATTCA......................................................1915.00512010100000
....................................................................................................TCACATTTACATATTCACAGT..................................................2115.00503010100000
.................................................................................................CTCTCACATTTACATATTCACAG...................................................2315.00504010000000
...................................................................................................CTCACATTTACATATTCAC.....................................................1914.00404000000000
......................................................................................................ACATTTACATATTCACAG...................................................1814.00404000000000
.....................................................................................................CACATTTACATATTCACAGT..................................................2013.00302100000000
..................................................................................................TCTCACATTTACATATTCACAGTA.................................................2412.00200200000000
.................................................................................................CTCTCACATTTACATATTCACA....................................................2212.00202000000000
.....................................................................................................CACATTTACATATTCACAG...................................................1912.00202000000000
..................................................GTGGGTATC-TGGATGTGG......................................................................................................1812.00201100000000
..................................................................................................TCTCACATTTACATATTCACAGTT.................................................2412.00201100000000
..................................................................................................TCTCACATTTACATATTCACC....................................................2112.00200010100000
...................................................................................................CTCACATTTACATATTCACAGTT.................................................2311.00101000000000
..................................................GTGGGTATC-TGGATGTGGTTGGC.................................................................................................2311.00100100000000
..................................................GTGGGTATC-TGGATGTGGTA....................................................................................................2011.00100100000000
...................................................................................................CTCACATTTACATATTCACAGTAA................................................2411.00100100000000
........................................................................GCTCTG------G-----C--GGTCCTCTCACATTT...............................................................2311.00110000000000
..................................................................................................TCTCACATTTACATATTCACAGG..................................................2311.00101000000000
..................................................GTGGGTATC-TGGATGTGGC.....................................................................................................1911.00100100000000
...................................................................................................................................................AACGCCCTCGAGTGGAAAGCTCTC2411.00100000010000
..................................................GTGGGTATC-TGGATGTGGTTGGCTC...............................................................................................2511.00100100000000
.....................................................................................................CACATTTACATATTCACA....................................................1811.00101000000000
...................................................................................................CTCACATTTACATATTCA......................................................1811.00101000000000
..................................................................................................TCTCACATTTACATATTCACAGAG.................................................2411.00101000000000
..................................................GTGGGTATC-TGGATGTGGTTGA..................................................................................................2211.00101000000000
....................................................................................................TCACATTTACATATTCACAGA..................................................2111.00101000000000
.................................................................................................CTCTCACATTTACATATTCACC....................................................2211.00101000000000
......................................................................................................ACATTTACATATTCACAGT..................................................1911.00101000000000
..................................................GTGGGTATC-TGGATGTGGAA....................................................................................................2011.00100100000000
..................................................GTGGGTATC-TGGATGTGGTT....................................................................................................2011.00100100000000
...................................................................................................CTCACATTTACATATTCACAGGT.................................................2311.00101000000000
...................................................TGGGTATC-TGGATGTGGTTGG..................................................................................................2111.00101000000000
..................................................GTGGGTATC-TGGATGTGGT.....................................................................................................1911.00100100000000
..................................................GTGGGTATC-TGGATGTGGTTGGT.................................................................................................2311.00100000010000
...................................................................................................CTCACATTTACATATTCACAGA..................................................2211.00101000000000
.....................................................................................................CACATTTACATATTCACAA...................................................1920.50101000000000
.....................................................................................................CACATTTACATATTCACACT..................................................2040.25100100000000
droEre2
CAGGAGCGCGAGGACGAGATGCGTGAACTGGCCCTGAAACTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAGTACGGAACGCCCTCGAGTGGAAAGCTCTCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..................................................................................................TCTCACATTTACATATTCACAG...................................................2212190.0021901858622523241980
..................................................................................................TCTCACATTTACATATTCACA....................................................2111194.001194833512025132520
..................................................................................................TCTCACATTTACATATTCACAGT..................................................231187.0018772119235580
..................................................GTGGGTATC-TGGATGTGGTTGG..................................................................................................221179.0017953620331120
...................................................................................................CTCACATTTACATATTCACAG...................................................211137.00137134010020
..................................................................................................TCTCACATTTACATATTCAC.....................................................201132.0013210214101140
...................................................................................................CTCACATTTACATATTCACA....................................................20163.006363000000
...................................................................................................CTCACATTTACATATTCACAGT..................................................22142.00421241013120
..................................................GTGGGTATC-TGGATGTGGTTG...................................................................................................21133.003321234210
..................................................................................................TCTCACATTTACATATTCACAGA..................................................23124.002418001050
..................................................................................................TCTCACATTTACATATTCA......................................................19122.002250000170
..................................................................................................TCTCACATTTACATATTCACAA...................................................22113.001312000010
..................................................................................................TCTCACATTTACATATTCACAC...................................................22111.00118300000
..................................................................................................TCTCACATTTACATATTCACAT...................................................2218.0086000020
....................................................................................................TCACATTTACATATTCACAG...................................................2017.0075000020
..................................................................................................TCTCACATTTACATATTCACAGC..................................................2317.0071300120
.................................................................................................CTCTCACATTTACATATTCACAG...................................................2315.0054100000
...................................................................................................CTCACATTTACATATTCAC.....................................................1915.0055000000
...................................................................................................CTCACATTTACATATTCACAT...................................................2115.0055000000
...................................................................................................CTCACATTTACATATTCACAGC..................................................2214.0042200000
..................................................GTGGGTATC-TGGATGTGGTTT...................................................................................................2114.0040012100
..................................................GTGGGTATC-TGGATGTGGTTGGC.................................................................................................2314.0040000220
..................................................GTGGGTATC-TGGATGTGGTTGGT.................................................................................................2314.0040000220
..................................................................................................TCTCACATTTACATATTCACG....................................................2113.0033000000
...................................................................................................CTCACATTTACATATTCACAGA..................................................2213.0032100000
..................................................GTGGGTATC-TGGATGTGGTT....................................................................................................2013.0031000110
..................................................................................................TCTCACATTTACATATTCACAGTA.................................................2412.0022000000
..................................................GTGGGTATC-TGGATGTGGT.....................................................................................................1912.0020000110
..................................................................................................TCTCACATTTACATATTCACAAA..................................................2312.0022000000
..................................................................................................TCTCACATTTACATATTCACACC..................................................2312.0022000000
.....................................................................................................CACATTTACATATTCACA....................................................1812.0021100000
..................................................................................................TCTCACATTTACATATTCACAGTT.................................................2412.0021000010
...................................................TGGGTATC-TGGATGTGGTTGG..................................................................................................2112.0020000020
....................................................................................................TCACATTTACATATTCACA....................................................1912.0021000010
...................................................................................................CTCACATTTACATATTCACAGTTT................................................2411.0010000010
.................................................................................................CTCTCACATTTACATATTCACA....................................................2211.0011000000
....................................................................................................TCACATTTACATATTCACAGT..................................................2111.0011000000
...................................................................................................CTCACATTTACATATTCACAA...................................................2111.0011000000
......................................................................................................ACATTTACATATTCACAG...................................................1811.0011000000
...................................................................................................CTCACATTTACATATTCACAC...................................................2111.0011000000
..................................................................................................TCTCACATTTACATATTCAA.....................................................2011.0010000010
.....................................................................................................CACATTTACATATTCACAG...................................................1911.0010001000
..................................................GTGGGTATC-TGGATGTGG......................................................................................................1811.0010000100
..................................................GTGGGTATC-TGGATGTGGTTGGCTC...............................................................................................2511.0010000010
..................................................GTGGGTATC-TGGATGTGGTTGGTA................................................................................................2411.0010000010
...................................................TGGGTATC-TGGATGTGGTTGGC.................................................................................................2211.0011000000
..................................................................................................TCTCACATTTACATATTCACGC...................................................2211.0010000010
.....................................................................................................CACATTTACATATTCACAGT..................................................2011.0010000010
...................................................................................................CTCACATTTACATATTCACAGTAA................................................2411.0011000000
..................................................................................................TCTCACATTTACATATTCACAAAA.................................................2411.0011000000
..................................................................................................TCTCACATTTACATATTCACC....................................................2111.0010001000
..................................................GTGGGTATC-TGGATGTGGTTGGCTCT..............................................................................................2611.0010000010
dp5
CAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTT------G---GTC--AGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCGGCACAAGTACGGCACGCCCTCCAGTGGCAAGCTGTCSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................................................................TCTCACATCTCTATATTCACAG...................................................2212900.00290001890243344252118202841
..................................................................................................TCTCACATCTCTATATTCACA....................................................2111024.00102426436169142945332
..................................................................................................TCTCACATCTCTATATTCACAGT..................................................231402.00402011949104814529011
..................................................GTGGGTATCGTGCTTGTGGGTGG..................................................................................................231223.002230811672914264244
...................................................................................................CTCACATCTCTATATTCACAG...................................................211155.00155015210110000
..................................................................................................TCTCACATCTCTATATTCACAC...................................................221117.001170732911211000
..................................................................................................TCTCACATCTCTATATTCAC.....................................................201115.001150711220480000
...................................................................................................CTCACATCTCTATATTCACA....................................................20172.007207010010000
..................................................................................................TCTCACATCTCTATATTCACAGA..................................................23169.006904498321110
..................................................................................................TCTCACATCTCTATATTCACACC..................................................23137.003702098000000
..................................................................................................TCTCACATCTCTATATTCACAGC..................................................23133.003302218200000
..................................................................................................TCTCACATCTCTATATTCACAA...................................................22116.001601220110000
..................................................GTGGGTATCGTGCTTGTGGGTG...................................................................................................22116.001601021300000
....................................................................................................TCACATCTCTATATTCACAG...................................................20115.001501100030010
..................................................GTGGGTATCGTGCTTGTGGGT....................................................................................................21115.00150410123031
..................................................GTGGGTATCGTGCTTGTGGG.....................................................................................................20111.00110620111000
..................................................................................................TCTCACATCTCTATATTCACAGTT.................................................24110.00100700200010
.....................................................................................................CACATCTCTATATTCACAG...................................................1919.0090700200000
...................................................................................................CTCACATCTCTATATTCACAC...................................................2119.0090900000000
...................................................................................................CTCACATCTCTATATTCACAGT..................................................2219.0090700001001
..................................................GTGGGTATCGTGCTTGTGGGTGGC.................................................................................................2419.0090510102000
..................................................GTGGGTATCGTGCTTGTGG......................................................................................................1919.0090600003000
..................................................................................................TCTCACATCTCTATATTCA......................................................1918.0080210121001
..................................................GTGGGTATCGTGCTTGTGGGTGGT.................................................................................................2417.0070200101003
..................................................................................................TCTCACATCTCTATATTCACACT..................................................2316.0060410100000
..................................................................................................TCTCACATCTCTATATTCACACA..................................................2316.0060510000000
..................................................................................................TCTCACATCTCTATATTCACACCA.................................................2416.0060501000000
......................................................................................................ACATCTCTATATTCACAG...................................................1815.0050400100000
..................................................................................................TCTCACATCTCTATATTCACAGTA.................................................2414.0040400000000
..................................................................................................TCTCACATCTCTATATTCACAGG..................................................2314.0040211000000
..................................................GTGGGTATCGTGCTTGTGGT.....................................................................................................2014.0040200002000
...................................................TGGGTATCGTGCTTGTGGGTGG..................................................................................................2214.0040310000000
.................................................................................................CTCTCACATCTCTATATTCACA....................................................2213.0030101100000
....................................................................................................TCACATCTCTATATTCACA....................................................1913.0030000020001
...................................................................................................CTCACATCTCTATATTCACAGA..................................................2213.0030300000000
.................................................................................................CTCTCACATCTCTATATTCACAG...................................................2313.0030110100000
...................................................................................................CTCACATCTCTATATTCACAGAAA................................................2412.0020200000000
..................................................GTGGGTATCGTGCTTGTG.......................................................................................................1812.0020100100000
....................................................................................................TCACATCTCTATATTCACAGTT.................................................2212.0020000000020
...................................................................................................CTCACATCTCTATATTCACACC..................................................2212.0020200000000
...................................................................................................CTCACATCTCTATATTCAC.....................................................1912.0020200000000
....................................................GGGTATCGTGCTTGTGGGTGG..................................................................................................2112.0020110000000
..................................................................................................TCTCACATCTCTATATTCACAGAA.................................................2412.0020100000010
..................................................................................................TCTCACATCTCTATATTCACT....................................................2111.0010000100000
..................................................................................................TCTCACATCTCTATATTCACAGCGA................................................2511.0010010000000
....................................................................................................TCACATCTCTATATTCACAA...................................................2011.0010100000000
..................................................GTGGGTATCGTGCTTGTGGGTGGTA................................................................................................2511.0010000100000
...................................................................................................CTCACATCTCTATATTCACAT...................................................2111.0010100000000
.................................................................................................CTCTCACATCTCTATATTCACAGC..................................................2411.0010010000000
.................................................................................................CTCTCACATCTCTATATTCACAGA..................................................2411.0010010000000
..................................................GTGGGTATCGTGCTTGTGT......................................................................................................1911.0010000010000
.................................................................................................CTCTCACATCTCTATATTCACAGT..................................................2411.0010100000000
..................................................GTGGGTATCGTGCTTGTGGGTGGCTCT..............................................................................................2711.0010000010000
....................................................GGGTATCGTGCTTGTGGGTGGC.................................................................................................2211.0010100000000
..................................................................................................TCTCACATCTCTATATTCACCT...................................................2211.0010000100000
...................................................................................................CTCACATCTCTATATTCACACCA.................................................2311.0010100000000
................................................................................................CCTCTCACATCTCTATATTCACAGT..................................................2511.0010100000000
..................................................................................................TCTCACATCTCTATATTC.......................................................1811.0010100000000
.......................................................................................................CATCTCTATATTCACAGT..................................................1811.0010100000000
..................................................................................................TCTCACATCTCTATATTCACATT..................................................2311.0010000100000
..................................................................................................TCTCACATCTCTATATTCACAGCTT................................................2511.0010100000000
.....................................................................................................CACATCTCTATATTCACACC..................................................2011.0010010000000
..................................................GTGGGTATCGTGCTTGTGGGTGGCTC...............................................................................................2611.0010000001000
..................................................GTGGGTATCGTGCTTGTGGGTGGA.................................................................................................2411.0010000010000
..................................................GTGGGTATCGTGCTTGTGGGTGGCT................................................................................................2511.0010100000000
.........GAGGATGAGATGCGCGAACT..............................................................................................................................................2011.0010100000000
..................................................................................................TCTCACATCTCTATATTCACAGAAA................................................2511.0010100000000
...................................................TGGGTATCGTGCTTGTGGGTGGA.................................................................................................2311.0010000000001
......................................................................................................ACATCTCTATATTCACAGA..................................................1911.0010100000000
...................................................TGGGTATCGTGCTTGTGGGT....................................................................................................2011.0010100000000
...................................................................................................CTCACATCTCTATATTCACAGTA.................................................2311.0010100000000
....................................................................................................TCACATCTCTATATTCACAGT..................................................2111.0010100000000
..................................................GTGGGTATCGTGCTTGTGTA.....................................................................................................2011.0010100000000
droPer2
CAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTT------G---GTC--AGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCGACACAAGTACGGCACGCCCTCCAGTGGCAAGCTGTCSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..................................................................................................TCTCACATCTCTATATTCACAG...................................................2211166.0011662145201072141092
..................................................................................................TCTCACATCTCTATATTCACA....................................................211339.0033951774973350
..................................................................................................TCTCACATCTCTATATTCACAGT..................................................231280.002808479981162
..................................................GTGGGTATCGTGCTTGTGGGTGG..................................................................................................231113.001133312151169
..................................................................................................TCTCACATCTCTATATTCACAC...................................................22157.00575482200
...................................................................................................CTCACATCTCTATATTCACAG...................................................21135.00350350000
..................................................................................................TCTCACATCTCTATATTCAC.....................................................20131.003101415110
..................................................................................................TCTCACATCTCTATATTCACACC..................................................23124.00241761000
..................................................................................................TCTCACATCTCTATATTCACAGA..................................................23121.00212142120
...................................................................................................CTCACATCTCTATATTCACA....................................................20121.00210200100
..................................................GTGGGTATCGTGCTTGTGGGT....................................................................................................21120.00200103313
..................................................GTGGGTATCGTGCTTGTGGG.....................................................................................................20120.00200101315
..................................................GTGGGTATCGTGCTTGTGGGTG...................................................................................................2219.009033003
..................................................................................................TCTCACATCTCTATATTCA......................................................1916.006020130
..................................................................................................TCTCACATCTCTATATTCACAGTT.................................................2416.006011130
....................................................................................................TCACATCTCTATATTCACAG...................................................2016.006040110
..................................................GTGGGTATCGTGCTTGTGG......................................................................................................1915.005000014
..................................................GTGGGTATCGTGCTTGTGGT.....................................................................................................2015.005000104
..................................................GTGGGTATCGTGCTTGTGGGTGGC.................................................................................................2414.004000004
..................................................GTGGGTATCGTGCTTGTGGGTGGT.................................................................................................2414.004001003
..................................................................................................TCTCACATCTCTATATTCACAT...................................................2214.004020110
...................................................................................................CTCACATCTCTATATTCAC.....................................................1914.004040000
.................................................................................................CTCTCACATCTCTATATTCACA....................................................2213.003012000
...................................................................................................CTCACATCTCTATATTCACAC...................................................2113.003030000
....................................................................................................TCACATCTCTATATTCACA....................................................1913.003001110
..................................................GTGGGTATCGTGCTTGTGGGTGGCT................................................................................................2512.002000002
..................................................................................................TCTCACATCTCTATATTCACAGG..................................................2312.002020000
..................................................GTGGGTATCGTGCTTGTG.......................................................................................................1812.002010010
..................................................GTGGGTATCGTGCTTGTGTT.....................................................................................................2012.002000002
..................................................................................................TCTCACATCTCTATATTCACACT..................................................2312.002000110
.....................................................................................................CACATCTCTATATTCACA....................................................1812.002020000
..................................................................................................TCTCACATCTCTATATTCACAGTAA................................................2512.002020000
.......................................................................................................CATCTCTATATTCACAGT..................................................1812.002011000
.................................................................................................CTCTCACATCTCTATATTCACAG...................................................2312.002020000
..................................................GTGGGTATCGTGCTTGTGGGTT...................................................................................................2212.002000002
...................................................................................................CTCACATCTCTATATTCACAGT..................................................2212.002020000
...................................................TGGGTATCGTGCTTGTGGGTGG..................................................................................................2212.002010001
...................................................................................................CTCACATCTCTATATTCACACC..................................................2212.002020000
..................................................................................................TCTCACATCTCTATATTCACAGC..................................................2312.002001100
..................................................................................................TCTCACATCTCTATATTCACAGTA.................................................2411.001010000
...................................................................................................CTCACATCTCTATATTCACAGGTA................................................2411.001010000
..................................................................................................TCTCACATCTCTATATTCACACTA.................................................2411.001010000
....................................................................................................TCACATCTCTATATTCACAGT..................................................2111.001000100
..................................................................................................TCTCACATCTCTATATTCACACA..................................................2311.001010000
..................................................................................................TCTCACATCTCTATATTCACAGGTA................................................2511.001010000
..................................................................................................TCTCACATCTCTATATTCACACCA.................................................2411.001010000
...................................................TGGGTATCGTGCTTGTGGGT....................................................................................................2011.001000001
....................................................................................................TCACATCTCTATATTCAC.....................................................1811.001010000
..................................................................................................TCTCACATCTCTATATTCACCTT..................................................2311.001000010
..................................................................................................TCTCACATCTCTATATTCACAA...................................................2211.001010000
..................................................................................................TCTCACATCTCTATATTCACATT..................................................2311.001010000
..................................................GTGGGTATCGTGCTTGTGGC.....................................................................................................2011.001000010
..................................................GTGGGTATCGTGCTTGTGGGTGGCTCT..............................................................................................2711.001010000
..................................................GTGGGTATCGTGCTTGTGGGG....................................................................................................2111.001000001
......................................................................................................ACATCTCTATATTCACAG...................................................1811.001010000
.......................................................TATCGTGCTTGTGGGTGGT.................................................................................................1911.001001000
droWil2
CAGGAGCGTGAAGATGAGATGAGAGAATTGGCGCTAAAGTTGCGCCGTAGGTGAGTATC-GGGTTGTGATTGGCTCCT------TGTGG-T--AGTCCTCTCACATCTCTATATTCACAGGCGTCGCGAGCTGCGTCACAAATATGGAACACCCTCTAGTGGTAAATTGTCSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..................................................................................................TCTCACATCTCTATATTCACAG...................................................22110655.001065536474073818981029
..................................................................................................TCTCACATCTCTATATTCACA....................................................2112106.00210624211632293406
..................................................GTGAGTATC-GGGTTGTGATTGG..................................................................................................221757.007578108134241266
..................................................................................................TCTCACATCTCTATATTCACAGT..................................................231584.00584751781022992
..................................................................................................TCTCACATCTCTATATTCAC.....................................................201321.003218019801726
...................................................................................................CTCACATCTCTATATTCACAG...................................................211316.003165304034
...................................................................................................CTCACATCTCTATATTCACA....................................................20195.0095094001
..................................................GTGAGTATC-GGGTTGTGATTG...................................................................................................21185.008547213914
..................................................................................................TCTCACATCTCTATATTCACAC...................................................22164.00644317121
..................................................................................................TCTCACATCTCTATATTCACAGA..................................................23151.00511628142
..................................................................................................TCTCACATCTCTATATTCACAA...................................................22145.0045231084
..................................................................................................TCTCACATCTCTATATTCA......................................................19134.00341260412
....................................................................................................TCACATCTCTATATTCACAG...................................................20125.0025219022
...................................................................................................CTCACATCTCTATATTCACAGT..................................................22121.0021118200
...................................................................................................CTCACATCTCTATATTCAC.....................................................19118.0018018000
..................................................................................................TCTCACATCTCTATATTCACAGG..................................................23115.001596000
..................................................................................................TCTCACATCTCTATATTCACAGC..................................................23112.001282020
...................................................TGAGTATC-GGGTTGTGATTGG..................................................................................................21110.001008101
.................................................................................................CTCTCACATCTCTATATTCACAG...................................................2319.00907020
..................................................GTGAGTATC-GGGTTGTGATTGGT.................................................................................................2319.00901332
..................................................................................................TCTCACATCTCTATATTCACAT...................................................2217.00712040
.....................................................................................................CACATCTCTATATTCACAG...................................................1917.00707000
..................................................GTGAGTATC-GGGTTGTGATT....................................................................................................2016.00612120
......................................................................................................ACATCTCTATATTCACAG...................................................1816.00606000
.................................................................................................CTCTCACATCTCTATATTCACA....................................................2215.00503020
...................................................................................................CTCACATCTCTATATTCACAGA..................................................2215.00505000
....................................................................................................TCACATCTCTATATTCACA....................................................1915.00504001
..................................................................................................TCTCACATCTCTATATTCACAAA..................................................2314.00404000
..................................................................................................TCTCACATCTCTATATTCACAGAA.................................................2414.00421010
..................................................................................................TCTCACATCTCTATATTCACAGTA.................................................2414.00402020
..................................................................................................TCTCACATCTCTATATTCACAGTT.................................................2414.00401003
..................................................GTGAGTATC-GGGTTGTGATTGGA.................................................................................................2313.00301200
..................................................................................................TCTCACATCTCTATATTCACACC..................................................2313.00321000
.....................................................................................................CACATCTCTATATTCACA....................................................1813.00303000
..................................................................................................TCTCACATCTCTATATTCAA.....................................................2012.00202000
...................................................................................................CTCACATCTCTATATTCACAA...................................................2112.00202000
..................................................................................................TCTCACATCTCTATATTC.......................................................1812.00202000
..................................................GTGAGTATC-GGGTTGTGATTT...................................................................................................2112.00201010
..................................................................................................TCTCACATCTCTATATTCACAGTAA................................................2512.00201010
..................................................................................................TCTCACATCTCTATATTCACC....................................................2112.00210001
..................................................................................................TCTCACATCTCTATATTCACG....................................................2112.00201010
..................................................................................................TCTCACATCTCTATATTCACAAT..................................................2312.00200002
..................................................................................................TCTCACATCTCTATATTCACAGGGC................................................2512.00220000
..................................................................................................TCTCACATCTCTATATTCACT....................................................2112.00220000
.....................................................................................................CACATCTCTATATTCACAGT..................................................2012.00202000
....................................................................................................TCACATCTCTATATTCAC.....................................................1811.00101000
...................................................................................................CTCACATCTCTATATTCACAAA..................................................2211.00101000
......................................................GTATC-GGGTTGTGATTGGC.................................................................................................1911.00101000
.................................................................................................CTCTCACATCTCTATATTC.......................................................1911.00101000
.......................................................................................................CATCTCTATATTCACAGT..................................................1811.00101000
..................................................GTGAGTATC-GGGTTGTGATTGA..................................................................................................2211.00100001
..................................................................................................TCTCACATCTCTATATTCACAGTAC................................................2511.00101000
..................................................GTGAGTATC-GGGTTGTGATTGGCTC...............................................................................................2511.00100100
..................................................GTGAGTATC-GGGTTGTGATTGGAA................................................................................................2411.00100100
.......GTGAAGATGAGATGAGAGAATTGGCG..........................................................................................................................................2611.00100010
..................................................GTGAGTATC-GGGTTGTGATTGGCT................................................................................................2411.00100100
..................................................GTGAGTATC-GGGTTGTGA......................................................................................................1811.00100010
...................................................................................................CTCACATCTCTATATTCACAGTT.................................................2311.00101000
..................................................GTGAGTATC-GGGTTGTGATTGGG.................................................................................................2311.00100100
...................................................TGAGTATC-GGGTTGTGATTGGT.................................................................................................2211.00100001
..................................................GTGAGTATC-GGGTTGTGATTGGC.................................................................................................2311.00100100
....................................................................................................TCACATCTCTATATTCACAC...................................................2011.00101000
..................................................................................................TCTCACATCTCTATATTCACACT..................................................2311.00101000
.................................................................................................CTCTCACATCTCTATATTCA......................................................2011.00101000
........................................................ATC-GGGTTGTGATTGGCTC...............................................................................................1911.00100010
..................................................................................................TCTCACATCTCTATATTCAT.....................................................2011.00101000
.....................................................................................................CACATCTCTATATTCACAC...................................................1911.00101000
....................................................GAGTATC-GGGTTGTGATTGG..................................................................................................2011.00101000
..................................................................................................TCTCACATCTCTATATTCACAGGC.................................................2411.00100001
..................................................................................................TCTCACATCTCTATATTCAAT....................................................2111.00100010
...................................................................................................CTCACATCTCTATATTCACAC...................................................2111.00101000
...................................................................................................CTCACATCTCTATATTCA......................................................1811.00101000
droVir3
CAGGAACGCGAGGATGAGATGCGCGAGCTCGCGCTAAAGCTGCGTCGTAGGTGAGTAAT-CAGTTGTGGGTGGCTTTT------T---GAA--AGCCCTCTCACATCTCTTTATTCACAGGCGGCGTGAGTTGCGGCACAAATATGGAACGCCGTCCAGCGGCAAACTCTCSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................................TCTCACATCTCTTTATTCACAG...................................................22167997.006799712476497928114551510140544723121743116342255026125456640536818831454205921643282275213403964114214895261085974635840231167415467111934283331691113138204380167413324228217209230322241067138518892119155118138205233
..................................................................................................TCTCACATCTCTTTATTCACA....................................................21111458.0011458663320039161320102014783532112729034018228333161303302453182535735013756931412617679207110347612204300152158141978537201962001445769784411169914134521384262
..................................................................................................TCTCACATCTCTTTATTCACAGT..................................................2314576.0045767927181633266058091124218548134042261095348296180142161244212201902445385672582802211870043001001452847331855255010514810181863834041425816271720
..................................................GTGAGTAAT-CAGTTGTGGGTGG..................................................................................................2212028.002028111964167774114146190004002520001110055600022600490120762300000000000000000001097868302400200206031000
..................................................................................................TCTCACATCTCTTTATTCAC.....................................................2011643.001643127454103200000012153823562673537231123243822686951831542773477600000010100000111131350004569142063101399
...................................................................................................CTCACATCTCTTTATTCACAG...................................................2111209.00120900943200100000007210000033441014125597040421000000000010000000000010813201065622100010
...................................................................................................CTCACATCTCTTTATTCACAGT..................................................221565.005650144313210020014212422511032221593031221771835361312160000000001101111200057071111138392627202900002
..................................................................................................TCTCACATCTCTTTATTCACAGA..................................................231493.00493016691000000000621421130237972727234390731090111012222203989742213101039231239872154213414
..................................................................................................TCTCACATCTCTTTATTCACAA...................................................221429.0042900117100000000102100011100198221212171328220188326230000000010000010010010017138114010100141611
...................................................................................................CTCACATCTCTTTATTCACA....................................................201356.00356003331000000000022012102002211220200000000000000000000000000000000000000000000000
..................................................GTGAGTAAT-CAGTTGTGGGTG...................................................................................................211304.0030473494171925001673112000000000000990079060030151000000000000000000002172900000100831011010
..................................................................................................TCTCACATCTCTTTATTCA......................................................191195.0019503810000000000191373610714341113211562320206111000000000000000000113000400000202000000
....................................................................................................TCACATCTCTTTATTCACAG...................................................201165.00165006102010000000530400051102424422322011240000000000000000001010063200012011100010
..................................................................................................TCTCACATCTCTTTATTCACC....................................................211145.001458747002000000006302311530030117571401000001000000000000010000001000100000020000111
..................................................................................................TCTCACATCTCTTTATTCACAT...................................................221145.0014500800000000100212361381118581361421223010221000000000000000000031000201000002100000
..................................................................................................TCTCACATCTCTTTATTCACAC...................................................221140.0014011428400000000000000100020321031465930121300000000000000010000100002941221002100110
..................................................................................................TCTCACATCTCTTTATTCACAGTT.................................................241131.00131001411110000010621412342642127951612100052000000000010000000001207810120000010000
.................................................................................................CTCTCACATCTCTTTATTCACAG...................................................231112.001120035000000000003011000100120838611540510400000000000000000000000000300100000000000
..................................................GTGAGTAAT-CAGTTGTGGGTGGT.................................................................................................231103.0010300313430012120000000000010002100010300009100000000000000000001513100000000000000000
.....................................................................................................CACATCTCTTTATTCACAG...................................................19183.0083003800000000000000100001021210001100001000000000000000000000000003300000001000000
...................................................................................................CTCACATCTCTTTATTCACAGA..................................................22167.0067101210100000000310000000011352002100000000000000011100100003100051010110110210110
..................................................................................................TCTCACATCTCTTTATTCACAGTAA................................................25162.006200400000000000000000000152430000702311400000000000000000000000006221100000011002
..................................................................................................TCTCACATCTCTTTATTCACAGTA.................................................24158.00580060000000000000000000003432630020112200000010000000000000001000310021130500032
..................................................GTGAGTAAT-CAGTTGTGGGTGT..................................................................................................22156.005600302220001105000000000000210000010010310000000000000000000511800000300000010201
....................................................................................................TCACATCTCTTTATTCACA....................................................19151.005100280000000000031012401201000000200200100000000000000000000001000200000000000000
..................................................................................................TCTCACATCTCTTTATTCACAGAA.................................................24150.00500010000000000010000001002430131421022100000000000000000000000005312003112000021
...................................................TGAGTAAT-CAGTTGTGGGTGG..................................................................................................21149.004900191010104400300000000000010000002000000000000000000000000010300000300000011103
..................................................................................................TCTCACATCTCTTTATTCACAAA..................................................23142.004200120000000000000000000012200054300104100000000000000000000000004100000000011000
...................................................................................................CTCACATCTCTTTATTCAC.....................................................19140.004000380000000000000001000000000010000000000000000000000000000000000000000000000000
......................................................................................................ACATCTCTTTATTCACAG...................................................18137.003700150010000000000000000100040021100120100000000000000000000000000800000000000000
...................................................................................................CTCACATCTCTTTATTCACAGTT.................................................23131.00310030200000000010100201012023120100000011000000010000000000001000300001000100000
..................................................GTGAGTAAT-CAGTTGTGGGT....................................................................................................20129.00290061130000100200000000000010000000001011000000000000000000011600000000100020000
.................................................................................................CTCTCACATCTCTTTATTCACA....................................................22128.00280090000000000011000001100212141200000000000000000000000000002000000000000000000
..................................................GTGAGTAAT-CAGTTGTGGGTGGA.................................................................................................23124.00240020000001700000100000000010000001000000000000000000000000020900000000000000000
..................................................................................................TCTCACATCTCTTTATTC.......................................................18123.00230610000000000000210100100000122300110000000000000000000001000000000000000000000
..................................................................................................TCTCACATCTCTTTATTCAA.....................................................20123.00230090000000000000000001002020010100201100000000000000000000000000210000000000000
..................................................GTGAGTAAT-CAGTTGTGGGTGGC.................................................................................................23122.002200010000021000000000000000000000000000000000000000000000000411300000000000000000
..................................................................................................TCTCACATCTCTTTATTCACAGC..................................................23122.00220032200000000000000000001222100212000001100000000000000000000000000000000000000
..................................................................................................TCTCACATCTCTTTATTCACAGAAA................................................25118.00180020000000000000000000002111000020002100000000000000000000000003011001000000000
.....................................................................................................CACATCTCTTTATTCACA....................................................18118.001800130000000000020000000001000010100000000000000000000000000000000000000000000000
..................................................................................................TCTCACATCTCTTTATTCACAGG..................................................23117.00170080100000000000000000000100010000000001000000000000000000000002000000011100000
....................................................................................................TCACATCTCTTTATTCACAGT..................................................21116.00160060100000000000001010021000010001000020000000000000000000000000000000000000000
..................................................................................................TCTCACATCTCTTTATTCACATT..................................................23116.00160000010010000021020002040000000002000001000000000000000000000000000000000000000
...................................................................................................CTCACATCTCTTTATTCACAA...................................................21115.001500150000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGTAAT-CAGTTGTGGGTGA..................................................................................................22113.00130010001001000000000000000001000000000000000000000000000000021600000000000000000
..................................................GTGAGTAAT-CAGTTGTGGG.....................................................................................................19112.00120120010000000000010010000000000000001010000000000000000000010100000000100010000
..................................................................................................TCTCACATCTCTTTATTCACACA..................................................23111.00110010000000000000000000001101010010110000000000000000000000000002000100000000000
..................................................................................................TCTCACATCTCTTTATTCACAAAA.................................................24111.00110020000000000000000000000111011110101000000000000000000000000000000000000000000
..................................................................................................TCTCACATCTCTTTATTCACAGTTA................................................25111.00110000000000000000000000001111000000120000000000000000000000000000010100200000000
..................................................................................................TCTCACATCTCTTTATTCAG.....................................................2018.0080010000000000010000000001010011100000100000000000000000000000000000000000000000
...................................................................................................CTCACATCTCTTTATTCACC....................................................2018.0080080000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGTAAT-CAGTTGTGGGTT...................................................................................................2118.0080011000000010000000000000001000101000000000000000000000000000200000000000000000
...................................................TGAGTAAT-CAGTTGTGGGTGGA.................................................................................................2218.0080000001000000000000000000000000000000000000000000000000000001500000000000001000
..................................................................................................TCTCACATCTCTTTATTCACACC..................................................2317.0070010000000000000000000001000100000000000000000000000000000000000001011000000100
..................................................GTGAGTAAT-CAGTTGTGGGTGGTC................................................................................................2416.0060000000001000000000000000000000001000000000000000000000000000400000000000000000
..................................................................................................TCTCACATCTCTTTATTCACT....................................................2116.0060110000000000000000010101000000000100000000000000000000000000000000000000000000
..................................................................................................TCTCACATCTCTTTATTCACG....................................................2116.0060100000000000001000001000000000200001000000000000000000000000000000000000000000
...................................................................................................CTCACATCTCTTTATTCACAGTA.................................................2315.0050010000000000000001000000001000010000000000000000000000000000000000000000100000
...................................................TGAGTAAT-CAGTTGTGGGTGGT.................................................................................................2215.0050000000002100000000000000000000000000000000000000000000000000200000000000000000
.......................................................................................................CATCTCTTTATTCACAGT..................................................1815.0050030000000000000000000010000000000000100000000000000000000000000000000000000000
...................................................TGAGTAAT-CAGTTGTGGGTG...................................................................................................2015.0050040000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................CTCACATCTCTTTATTCACACC..................................................2214.0040020000000000000000000000000000000000000200000000000000000000000000000000000000
.................................................................................................CTCTCACATCTCTTTATTCACAGT..................................................2414.0040010000000000000000000000000010100001000000000000000000000000000000000000000000
.................................................................................................CTCTCACATCTCTTTATTCAC.....................................................2114.0040020000000000000110000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTCACATCTCTTTATTCACAGC..................................................2214.0040001000000000000000000000000000100000000000000000000000000000001000010000000000
...................................................................................................CTCACATCTCTTTATTCACAC...................................................2114.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TCTCACATCTCTTTATTCACAGTTC................................................2514.0040000000000000000000000000000102100000000000000000000000000000000000000000000000
..................................................................................................TCTCACATCTCTTTATTCACAGTG.................................................2413.0030010000000000000000000000000000000000000000000000000000000000001000000000000001
................................................................................................CCTCTCACATCTCTTTATTCACAG...................................................2413.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TCACATCTCTTTATTCACAA...................................................2013.0030020000000000000000000000000000001000000000000000000000000000000000000000000000
....................................................GAGTAAT-CAGTTGTGGGTGG..................................................................................................2013.0030021000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TCTCACATCTCTTTATTCACAGTTT................................................2513.0030010000000000000000000000000000100000000000000000000000000000000000000000010000
.....................................................................................................CACATCTCTTTATTCACAA...................................................1913.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGTAAT-CAGTTGTGGGTGC..................................................................................................2213.0030001000001000000000000000000000000000000000000000000000000010000000000000000000
..................................................................................................TCTCACATCTCTTTATTCACACT..................................................2323.0060000000000000000000000001000100000000000000000000010000000000000000100020000000
..................................................................................................TCTCACATCTCTTTATTCACCC...................................................2213.0030020000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................GTGAGTAAT-CAGTTGTGG......................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000001000000000100000100
..................................................................................................TCTCACATCTCTTTATTCACAGGT.................................................2413.0030010000000000000000000000000001000000000000000000000000000000000000000100000000
..................................................................................................TCTCACATCTCTTTATTCAGT....................................................2113.0030000000000000000000000000001000000010001000000000000000000000000000000000000000
...................................................................................................CTCACATCTCTTTATTCACAGAAA................................................2412.0020001000000000000000000000000000000000000000000000000000000000001000000000000000
..................................................GTGAGTAAT-CAGTTGTGGGTC...................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000200000000000000000
...................................................................................................CTCACATCTCTTTATTCACAGAA.................................................2312.0020010000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................ACATCTCTTTATTCACAGT..................................................1912.0020000100000000000000000000000010000000000000000000000000000000000000000000000000
..................................................GTGAGTAAT-CAGTTGTGGGTGTA.................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000010100000000000000000
..................................................................................................TCTCACATCTCTTTATTCACAGGCCCG..............................................2712.0020000000000000000000000000000010000000010000000000000000000000000000000000000000
....................................................................................................TCACATCTCTTTATTCACAT...................................................2012.0020000000000000001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTCACATCTCTTTATTCACATT..................................................2212.0020000000000000000000010010000000000000000000000000000000000000000000000000000000
droMoj3
CAGGAGCGCGAGGACGAGATGCGCGAGCTGGCGCTCAAGCTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTCTA------G-----TGAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGAGAGTTGCGCCACAAGTACGGCACGCCGTCCAGTGGCAAGCTCTCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................................................................TCTCACATCTCTTTATTCACAG...................................................22119883.001988314055623282325455642
..................................................................................................TCTCACATCTCTTTATTCACA....................................................2117296.00729648303736783192320
..................................................................................................TCTCACATCTCTTTATTCAC.....................................................2011753.0017538034917178670
..................................................................................................TCTCACATCTCTTTATTCACAGT..................................................2311519.001519549419513464159
..................................................GTGAGTAAT-CAGTTGTGGGTGG..................................................................................................2211455.0014551122442349301726
...................................................................................................CTCACATCTCTTTATTCACAG...................................................2111218.0012181183122291
...................................................................................................CTCACATCTCTTTATTCACA....................................................201452.00452437000150
..................................................................................................TCTCACATCTCTTTATTCACAA...................................................221231.00231195200340
..................................................................................................TCTCACATCTCTTTATTCACAC...................................................221209.00209535021490
...................................................................................................CTCACATCTCTTTATTCACAGT..................................................221185.0018574749856
..................................................GTGAGTAAT-CAGTTGTGGGTG...................................................................................................211179.001793428845649
..................................................................................................TCTCACATCTCTTTATTCACAGA..................................................231179.0017979101980
..................................................................................................TCTCACATCTCTTTATTCACAGC..................................................231168.00168223031400
..................................................GTGAGTAAT-CAGTTGTGGGTGGT.................................................................................................231145.0014589244118
....................................................................................................TCACATCTCTTTATTCACAG...................................................20199.009974423160
..................................................GTGAGTAAT-CAGTTGTGGGTGT..................................................................................................22187.0087313331649
...................................................................................................CTCACATCTCTTTATTCAC.....................................................19172.00726700050
.................................................................................................CTCTCACATCTCTTTATTCACAG...................................................23168.006837110290
..................................................................................................TCTCACATCTCTTTATTCACAGTT.................................................24155.005519294210
..................................................................................................TCTCACATCTCTTTATTCA......................................................19148.00488737230
...................................................................................................CTCACATCTCTTTATTCACAGA..................................................22146.004618100270
..................................................GTGAGTAAT-CAGTTGTGGGTGGC.................................................................................................23136.00362200725
..................................................................................................TCTCACATCTCTTTATTCACC....................................................21133.00332801040
.....................................................................................................CACATCTCTTTATTCACAG...................................................19132.00322411060
....................................................................................................TCACATCTCTTTATTCACA....................................................19131.00312140060
.................................................................................................CTCTCACATCTCTTTATTCACA....................................................22129.002915000140
..................................................................................................TCTCACATCTCTTTATTCAA.....................................................20126.00262410010
..................................................................................................TCTCACATCTCTTTATTCACAGTA.................................................24126.00266000200
..................................................GTGAGTAAT-CAGTTGTGGGT....................................................................................................20126.00263011120
..................................................................................................TCTCACATCTCTTTATTCACG....................................................21122.00220000220
..................................................................................................TCTCACATCTCTTTATTCACAT...................................................22121.0021625350
...................................................................................................CTCACATCTCTTTATTCACAGC..................................................22120.00205000150
..................................................................................................TCTCACATCTCTTTATTCACAGTAA................................................25120.00201400060
...................................................TGAGTAAT-CAGTTGTGGGTGG..................................................................................................21119.00191520101
..................................................GTGAGTAAT-CAGTTGTGGGTGGA.................................................................................................23118.00181001115
...................................................................................................CTCACATCTCTTTATTCACAA...................................................21115.00151500000
......................................................................................................ACATCTCTTTATTCACAG...................................................18113.0013800050
.....................................................................................................CACATCTCTTTATTCACA....................................................18112.0012410070
..................................................................................................TCTCACATCTCTTTATTCACAGG..................................................23111.0011800030
..................................................GTGAGTAAT-CAGTTGTGGG.....................................................................................................19110.0010200053
...................................................................................................CTCACATCTCTTTATTCACAGTT.................................................23110.0010202150
....................................................................................................TCACATCTCTTTATTCAC.....................................................1819.009600030
..................................................................................................TCTCACATCTCTTTATTCACAAA..................................................2319.009900000
...................................................TGAGTAAT-CAGTTGTGGGTGGT.................................................................................................2219.009110007
..................................................GTGAGTAAT-CAGTTGTGGGTT...................................................................................................2118.008030005
..................................................GTGAGTAAT-CAGTTGTGGGTGGTC................................................................................................2418.008000008
..................................................GTGAGTAAT-CAGTTGTGGGTGC..................................................................................................2217.007000142
..................................................................................................TCTCACATCTCTTTATTCACACC..................................................2317.007000070
..................................................GTGAGTAAT-CAGTTGTGGGTGA..................................................................................................2217.007000034
..................................................................................................TCTCACATCTCTTTATTCACACT..................................................2316.006300030
..................................................................................................TCTCACATCTCTTTATTCACAGAA.................................................2416.006400020
....................................................................................................TCACATCTCTTTATTCACAGT..................................................2116.006100230
.....................................................................................................CACATCTCTTTATTCACAGT..................................................2016.006200040
.................................................................................................CTCTCACATCTCTTTATTCAC.....................................................2115.005100040
...................................................................................................CTCACATCTCTTTATTCACAAA..................................................2214.004300010
...................................................TGAGTAAT-CAGTTGTGGGTGGA.................................................................................................2214.004020002
......................................................................................................ACATCTCTTTATTCACAGT..................................................1914.004100120
..................................................................................................TCTCACATCTCTTTATTC.......................................................1814.004300010
..................................................GTGAGTAAT-CAGTTGTGGGTGTA.................................................................................................2314.004030010
...................................................................................................CTCACATCTCTTTATTCACC....................................................2014.004400000
..................................................GTGAGTAAT-CAGTTGTGGGTGGCT................................................................................................2414.004110002
..................................................................................................TCTCACATCTCTTTATTCACAAAA.................................................2413.003300000
.................................................................................................CTCTCACATCTCTTTATTCACAGT..................................................2413.003200010
....................................................GAGTAAT-CAGTTGTGGGTGG..................................................................................................2013.003100011
.................................................................................................CTCTCACATCTCTTTATTCACAGA..................................................2413.003000030
..................................................................................................TCTCACATCTCTTTATTCACATT..................................................2313.003001110
..................................................GTGAGTAAT-CAGTTGTGGGTGGTA................................................................................................2413.003020100
..................................................................................................TCTCACATCTCTTTATTCACT....................................................2113.003001020
...................................................................................................CTCACATCTCTTTATTCACAC...................................................2113.003200010
..................................................GTGAGTAAT-CAGTTGTGGGTGTT.................................................................................................2312.002010001
..................................................................................................TCTCACATCTCTTTATTCACACA..................................................2312.002100010
.......................................................................................................CATCTCTTTATTCACAGC..................................................1812.002000020
...................................................................................................CTCACATCTCTTTATTCAA.....................................................1922.004400000
..................................................................................................TCTCACATCTCTTTATTCACAGTTA................................................2512.002100010
...................................................TGAGTAAT-CAGTTGTGGGTGT..................................................................................................2112.002000011
...................................................TGAGTAAT-CAGTTGTGGGTGGC.................................................................................................2212.002010010
....................................................................................................TCACATCTCTTTATTCACAGA..................................................2112.002110000
..................................................................................................TCTCACATCTCTTTATTCACGC...................................................2212.002100010
.......................................................................................................CATCTCTTTATTCACAGT..................................................1812.002000020
..................................................GTGAGTAAT-CAGTTGTGGGTTT..................................................................................................2212.002000002
droGri2
CAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAATTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTTTTGTTCTTA-GGGAA--AGCCCTCTCACATCTCTTTATTCACAGGCGGCGCGAATTGCGCCACAAATATGGAACGCCCTCCAGTGGCAAACTCTCSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..................................................................................................TCTCACATCTCTTTATTCACAG...................................................221699.006996954
..................................................................................................TCTCACATCTCTTTATTCACA....................................................211469.004694672
..................................................GTGAGTAAT-CAGTTGTGGGTGG..................................................................................................221105.001052877
..................................................................................................TCTCACATCTCTTTATTCAC.....................................................20185.0085850
...................................................................................................CTCACATCTCTTTATTCACAG...................................................21167.0067661
...................................................................................................CTCACATCTCTTTATTCACA....................................................20144.0044440
..................................................................................................TCTCACATCTCTTTATTCACAGT..................................................23132.0032302
..................................................................................................TCTCACATCTCTTTATTCA......................................................19112.0012120
..................................................................................................TCTCACATCTCTTTATTCACAC...................................................22111.0011110
...................................................................................................CTCACATCTCTTTATTCAC.....................................................1918.00880
...................................................................................................CTCACATCTCTTTATTCACAGT..................................................2216.00651
..................................................GTGAGTAAT-CAGTTGTGGGTG...................................................................................................2116.00642
....................................................................................................TCACATCTCTTTATTCACAG...................................................2016.00660
..................................................GTGAGTAAT-CAGTTGTGGGT....................................................................................................2014.00413
....................................................................................................TCACATCTCTTTATTCACA....................................................1914.00440
...................................................................................................CTCACATCTCTTTATTCACAGTT.................................................2314.00440
..................................................GTGAGTAAT-CAGTTGTGGGTGT..................................................................................................2213.00303
..................................................GTGAGTAAT-CAGTTGTGGGTT...................................................................................................2113.00321
..................................................GTGAGTAAT-CAGTTGTGGGTGGC.................................................................................................2313.00312
...................................................TGAGTAAT-CAGTTGTGGGTGG..................................................................................................2112.00211
...................................................................................................CTCACATCTCTTTATTCACAGA..................................................2212.00220
......................................................................................................ACATCTCTTTATTCACAG...................................................1812.00220
..................................................GTGAGTAAT-CAGTTGTGGG.....................................................................................................1912.00211
..................................................................................................TCTCACATCTCTTTATTCACAGA..................................................2312.00220
.....................................................................................................CACATCTCTTTATTCACAG...................................................1912.00220
..................................................................................................TCTCACATCTCTTTATTC.......................................................1812.00220
.................................................................................................CTCTCACATCTCTTTATTCACAG...................................................2312.00220
..................................................GTGAGTAAT-CAGTTGTGGGTTT..................................................................................................2212.00202
..................................................................................................TCTCACATCTCTTTATTCACAA...................................................2212.00220
..................................................GTGAGTAAT-CAGTTGTGGGTGGCT................................................................................................2411.00110
..................................................................................................TCTCACATCTCTTTATTCACAGTA.................................................2411.00110
..................................................GTGAGTAAT-CAGTTGTGGGTGGA.................................................................................................2311.00101
..................................................GTGAGTAAT-CAGTTGTGGGTGTA.................................................................................................2311.00101
................................................................................................CCTCTCACATCTCTTTATTCACAG...................................................2411.00110
..................................................................................................TCTCACATCTCTTTATTCACAGAA.................................................2411.00110
.................................................................................................CTCTCACATCTCTTTATTCACA....................................................2211.00110
..................................................................................................TCTCACATCTCTTTATTCACAAA..................................................2311.00110
..................................................................................................TCTCACATCTCTTTATTCACATTG.................................................2411.00110
..................................................................................................TCTCACATCTCTTTATTCACAT...................................................2211.00110
..................................................GTGAGTAAT-CAGTTGTGGGTGGCA................................................................................................2411.00101
...................................................TGAGTAAT-CAGTTGTGGGTGGT.................................................................................................2211.00101
.....................................................................................................CACATCTCTTTATTCACA....................................................1811.00110
...................................................................................................CTCACATCTCTTTATTCACAGC..................................................2211.00110
..................................................................................................TCTCACATCTCTTTATTCACAGTAA................................................2520.50110

Generated: 10/20/2015 at 07:25 PM