ID:

dan_253

 Coordinate:

scaffold_9311:5929-6016 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.4 -22.2 -22.2 -22.0

Flybase annnotation

intergenic

No Repeatable elements found

mature
star
  1. scaffold_4145:544-564 +
  2. scaffold_8227:1050-1070 +
  3. dan_253  scaffold_9311:5968-5988 -
  4. scaffold_10413:7058-7078 +
  5. scaffold_10559:1292-1312 -
  6. scaffold_12873:127-147 -
  7. scaffold_13139:10552-10572 -
  8. scaffold_13163:21278-21298 -
  9. scaffold_13266:116341-116361 -
  10. scaffold_13767:1603859-1603879 -
  11. scaffold_13767:1604820-1604840 -
  12. scaffold_13767:1605783-1605803 -
  13. scaffold_13767:1608669-1608689 -
  14. scaffold_13767:1663091-1663111 -
  15. scaffold_13767:1664054-1664074 -
  16. scaffold_13767:1671442-1671462 -
  17. scaffold_13767:1672403-1672423 -
  18. scaffold_13767:1673369-1673389 -
  19. scaffold_13767:1674331-1674351 -
  20. scaffold_13767:1676567-1676587 -
  21. scaffold_7179:872-892 +
  22. scaffold_7180:811-831 +
  23. scaffold_9749:1481-1501 +
  24. scaffold_9749:2443-2463 +
  25. scaffold_9749:3375-3395 +
  26. scaffold_10413:8020-8040 +

Sense Strand Reads

TTTTGGGCTGAATTTAAGCACAGTCTTCTTTTCTCCAGGGCCCAAGTAGTTGTGGTCGAGGGAACGGAGAGTCCCCCGGAGTATTACCCGAAGGGCAACTTTTTTTCCGGGAGACTTTCCACATCAGTGGCGGGCTCCTGGAGAGAGCACTTTCTCCTGGTGTTTTTTTTTGGGGTCGTCGGGACTCA
***********************************....................((...((((..((((((.((((((........)))..)))..)))))).))))....))************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 M044
female body
 V105
male body		 V106
head
 V055
head
..................................................TGTGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 24 0 1 348.00 348 348 0 0 0 0 0
..................................................TTTGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 24 1 1 90.00 90 90 0 0 0 0 0
.................................................TTGTGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 25 0 1 33.00 33 33 0 0 0 0 0
..................................................TGCGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 24 1 1 27.00 27 27 0 0 0 0 0
..................................................TTTGGTCGAGGGAACGGAGAGTC................................................................................................................... 23 1 20 12.30 246 244 1 1 0 0 0
..................................................TGTGGTCGAGGGAACGGAGAGTC................................................................................................................... 23 0 20 10.10 202 0 202 0 0 0 0
....................................................TGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 22 0 1 10.00 10 10 0 0 0 0 0
...................................................GTGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 23 0 1 9.00 9 9 0 0 0 0 0
..................................................TTCGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 24 2 1 8.00 8 8 0 0 0 0 0
..................................................TGTTGTCGAGGGAACGGAGAGTCC.................................................................................................................. 24 1 1 7.00 7 7 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGAGT.................................................................................................................... 22 0 20 6.10 122 0 36 76 9 1 0
..................................................TGTGGTCGAGGGAACGGAGAG..................................................................................................................... 21 0 20 5.95 119 115 0 0 4 0 0
..................................................TGTGGTCGAGGGAACGGAGAGACC.................................................................................................................. 24 1 2 5.00 10 10 0 0 0 0 0
....................................................TTGTCGAGGGAACGGAGAGTCC.................................................................................................................. 22 1 1 5.00 5 5 0 0 0 0 0
..................................................TGTGGGCGAGGGAACGGAGAGTCC.................................................................................................................. 24 1 1 4.00 4 4 0 0 0 0 0
..................................................TGCGGTCGAGGGAACGGAGAGTC................................................................................................................... 23 1 20 3.85 77 77 0 0 0 0 0
....................................................TGGTCGAGGGAACGGAGAGTC................................................................................................................... 21 0 20 3.55 71 42 29 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGA...................................................................................................................... 20 0 20 3.25 65 44 13 0 8 0 0
.......................................................................TCCCCCGGAGTATTACCCGAAGGGCAAC......................................................................................... 28 0 1 3.00 3 3 0 0 0 0 0
...................................................GGGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 23 1 1 3.00 3 3 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGAGTGC.................................................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGAGTCCCCCC.............................................................................................................. 28 1 1 2.00 2 0 2 0 0 0 0
................................................GTTGTGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGTGTCC.................................................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TCTGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TTTTGTCGAGGGAACGGAGAGTCC.................................................................................................................. 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TTTGGTCGAGGGAACGGAGAGTCCC................................................................................................................. 25 1 1 2.00 2 2 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGAGTCCCCC............................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0
.....................................................GGTCGAGGGAACGGAGAGTCC.................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0
......................................................GTCGAGGGAACGGAGAGTCC.................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0
..................................................TGTAGTCGAGGGAACGGAGAGTCC.................................................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
.................................................TTGTGGTCGAGGGAACGGAGA...................................................................................................................... 21 0 20 1.85 37 24 11 0 2 0 0
.................................................TTGTGGTCGAGGGAACGGAGAGTC................................................................................................................... 24 0 20 1.80 36 0 33 0 2 1 0
.................................................TTGTGGTCGAGGGAACGGAGAG..................................................................................................................... 22 0 20 1.65 33 27 0 5 0 0 1
............................................................................CGGAGTATTACCCGAAGGGCAACT........................................................................................ 24 0 20 1.50 30 22 2 4 2 0 0
..................................................TGTGGTCGAGGGAACGGAGAGTT................................................................................................................... 23 1 20 1.45 29 19 3 7 0 0 0
..................................................TTTGGTCGAGGGAACGGAGAG..................................................................................................................... 21 1 20 1.40 28 28 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAG....................................................................................................................... 19 0 20 1.35 27 10 0 17 0 0 0
..............................................................................GAGTATTACCCGAAGGGCAAC......................................................................................... 21 0 20 1.25 25 22 0 3 0 0 0
............................................................................CGGAGTATTACCCGAAGGGC............................................................................................ 20 0 20 1.20 24 10 14 0 0 0 0
................................................GTTGTGGTCGAGGGAACGGAGAGTC................................................................................................................... 25 0 20 1.05 21 13 8 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGAGCCC.................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
................................................CTTGTGGTCGAGGGATCGGAGAGTCC.................................................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0
..................................................TGTGGTCGCGGGAACGGAGAGTCCC................................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
..................................................TGTGGTCGAGGGAACGGGGAGTCC.................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGAGGTCGAGGCAACCGAGAGTCCCCC............................................................................................................... 27 3 1 1.00 1 0 1 0 0 0 0
..................................................TGTGGTCGAGCGAACGGAGAGTCC.................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
..................................................TGTGGTCGAGGGAGCGGAGAGTCC.................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TATGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
.................................................TTGCGGTCAAGGGAACGGAGAGTCC.................................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0
.................................................GTGTGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTGGTCGAGGGAAAGGAGAGTCC.................................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGTCTCCC................................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0
..................................................TGTGGTCCAGCGAACGGAGAGTCC.................................................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0
.....................................................GTCCGAGGGAACGGAGAGTCC.................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0
..................................................CGTGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGTGGTCGTGGGAACGGAGAGTCCCCCG.............................................................................................................. 28 1 1 1.00 1 0 0 1 0 0 0
..................................................TGTGGTCGAGGGAACGGCTAGTCCCC................................................................................................................ 26 2 1 1.00 1 0 1 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGAGTTCA................................................................................................................. 25 2 1 1.00 1 0 0 0 1 0 0
....................................................TAGTCGAGGGAACGGAGAGTCC.................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGGTCGCGGGAACGGAGAGTCC.................................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
...................................................GGGGTCGAGGGAACGGAGAGTCCCCCG.............................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
..................................................TGGGGGCGAGGGAACGGCGAGTCCC................................................................................................................. 25 3 1 1.00 1 0 1 0 0 0 0
.................................................TGGTGGTCGAGGGAACGGAGAGTC................................................................................................................... 24 1 20 1.00 20 20 0 0 0 0 0
..................................................TTTGGTCGAGGGAACGGAGAGCCC.................................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..............................................................AACGGAGAGTCCCCCGGCGTATTACC.................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
.......................................................................TCCCCCGGAGTATTACCCGAAGGGCAACT........................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0
.................................................TTGTGGTCGAGGGAACGGAGGGTCC.................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGAAGAGTCC.................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
.................................................TTCTGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
.........................................................................CCCCGGAGTATTACCCGAAGGGCAAC......................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.......................................................................TCCCTCGGAGTATTACCCGAAGGGT............................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................TGTAGTCGAGGGAACGGACAGTCCCC................................................................................................................ 26 2 1 1.00 1 0 1 0 0 0 0
.................................................TGGTGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
.................................................TCGTGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
..................................................TGTGGTCAAGGGAACGGAGAGTCC.................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
...................................................GGCGTCGAGGGAACGGAGAGTCC.................................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TGTGGTCTAGGGAACGGAGAGTCC.................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGCAGAGTCC.................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TTAGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
.......................................................TCGAGGGAACGGAGAGTCC.................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
.......................................................TCGAGGGAACGGAAAGTCC.................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0
.................................................................TGGGAGTCCCCCGAAGTATTACCC................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TGTGGTCGAGGGCAAGGAGAGTCC.................................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TGTGGTCGATGGAACGGAGAGTCCTT................................................................................................................ 26 3 1 1.00 1 0 1 0 0 0 0
..................................................TGGGGGCGAGGGAACGGAGAGTCCC................................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0
.................................................TTGCGGTCGAGGGAACGGAGAGTCC.................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
....................................................TGGTCGAGGGAACGGATAGTCC.................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
....................................................TGGTCGAGGGAACGGAGAGT.................................................................................................................... 20 0 20 0.90 18 17 1 0 0 0 0
...................................................GTGGTCGAGGGAACGGAGAGTC................................................................................................................... 22 0 20 0.90 18 18 0 0 0 0 0
...........................................................................CCGGAGTATTACCCGAAGGGC............................................................................................ 21 0 20 0.85 17 0 11 5 0 1 0
...........................................................................CCGGAGTATTACCCGAAGGGCAACT........................................................................................ 25 0 20 0.85 17 13 0 3 1 0 0
............................................................................CGGAGTATTACCCGAAGGGCA........................................................................................... 21 0 20 0.85 17 10 1 6 0 0 0
..........................................................................CCCGGAGTATTACCCGAAGGGCAACT........................................................................................ 26 0 20 0.75 15 15 0 0 0 0 0
..................................................TGTTGTCGAGGGAACGGAGAGTC................................................................................................................... 23 1 20 0.70 14 14 0 0 0 0 0
.................................................TGGTGGTCGAGGGAACGGAGAGT.................................................................................................................... 23 1 20 0.70 14 14 0 0 0 0 0
.................................................................................TATTACCCGAAGGGCAACTTTTTTTCC................................................................................ 27 0 3 0.67 2 2 0 0 0 0 0
..........................................................................CCCGGAGTATTACCCGAAGGGCAAC......................................................................................... 25 0 20 0.65 13 13 0 0 0 0 0
...........................................................................CCGGAGTATTACCCGAAGGGCAAC......................................................................................... 24 0 20 0.65 13 13 0 0 0 0 0
....................................................TTGTCGAGGGAACGGAGAGTC................................................................................................................... 21 1 20 0.60 12 12 0 0 0 0 0
..................................................TGCGGTCGAGGGAACGGAGAG..................................................................................................................... 21 1 20 0.55 11 11 0 0 0 0 0
............................................................................CTGAGTATTACCCGAAGGGCAAC......................................................................................... 23 1 20 0.55 11 11 0 0 0 0 0
.................................................TTGTGGTCGAGGGAACGGAGAGACC.................................................................................................................. 25 1 2 0.50 1 1 0 0 0 0 0
..............................................TTGTTGTGGTCGAGGGAACGG......................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
..................................................TGTGGTCGAGGGCAAGGAGATTCC.................................................................................................................. 24 3 2 0.50 1 1 0 0 0 0 0
..................................................TGCGGTCGAGGGAACGGAGAGACC.................................................................................................................. 24 2 2 0.50 1 1 0 0 0 0 0
..................................................TTTGGTCGAGGGAACGGAGAGACC.................................................................................................................. 24 2 2 0.50 1 1 0 0 0 0 0
....................................................TGGTCGAGGGAACGGAGACACCCC................................................................................................................ 24 2 2 0.50 1 0 1 0 0 0 0
....................................................TGGTTGAGGGAACGGAGAGACC.................................................................................................................. 22 2 2 0.50 1 1 0 0 0 0 0
....................................................................GAGTCCCCCGAAGTATTACCCGAAGG.............................................................................................. 26 1 2 0.50 1 1 0 0 0 0 0
..............................................................................GAGTATTACCCGAAGGGCAACT........................................................................................ 22 0 20 0.50 10 4 5 1 0 0 0
.............................................GTCGTTGTGGTCGAGGGAACGGA........................................................................................................................ 23 1 2 0.50 1 1 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGCGACCCC................................................................................................................ 26 2 2 0.50 1 0 1 0 0 0 0
......................................................................................................TTCTCCGGGAGACTTTCCACTTAA.............................................................. 24 3 2 0.50 1 0 1 0 0 0 0
..................................................TTCGGTCGAGGGAACGGAGAGACC.................................................................................................................. 24 3 2 0.50 1 1 0 0 0 0 0
.................................................TGGTGGTCGAGGGAACGGAGAG..................................................................................................................... 22 1 20 0.50 10 10 0 0 0 0 0
.......................................................................ACCCCCGGAGTATTACCCGAAGGGC............................................................................................ 25 1 2 0.50 1 1 0 0 0 0 0
..............................................TCGTTGTGGTCGAGGGAACGGAG....................................................................................................................... 23 1 2 0.50 1 0 0 0 1 0 0
................................................GTTGTGGTCGAGGGAACGGAGAG..................................................................................................................... 23 0 20 0.45 9 6 0 3 0 0 0
................................................GTTGTGGTCGAGGGAACGGAG....................................................................................................................... 21 0 20 0.45 9 1 0 8 0 0 0
.................................................TTGTGGTCGAGGGAACGGAG....................................................................................................................... 20 0 20 0.45 9 0 1 8 0 0 0
..................................................TGTGGTCGAGGGAACGGAGAC..................................................................................................................... 21 1 20 0.45 9 9 0 0 0 0 0
.................................................................................TATTACCCGAAGGGCAACTTT...................................................................................... 21 0 20 0.35 7 7 0 0 0 0 0
................................................................................GTATTACCCGAAGGGCAACTT....................................................................................... 21 0 20 0.35 7 0 0 7 0 0 0
...........................................................................CCGGAGTATTACCCGAAGGGCAACC........................................................................................ 25 1 20 0.35 7 7 0 0 0 0 0
..................................................TTCGGTCGAGGGAACGGAGAG..................................................................................................................... 21 2 20 0.35 7 7 0 0 0 0 0
.......................................................TCGAGGGAACGGAGAGTC................................................................................................................... 18 0 20 0.35 7 7 0 0 0 0 0
........................................................................................CGAAGGGCAACTTTTTTTCCGG.............................................................................. 22 0 3 0.33 1 0 1 0 0 0 0
.................................................................................TATTACCCGAAGGGCAACTTTTTTT.................................................................................. 25 0 3 0.33 1 1 0 0 0 0 0
................................................................................GAATTACCCGAAGGGCAACTTTTTT................................................................................... 25 1 3 0.33 1 1 0 0 0 0 0
................................................................................................AACTTTTTTTCCTGTAGACTTTCCACT................................................................. 27 3 3 0.33 1 0 1 0 0 0 0
................................................................................................AACTTTTTTTCCTGGAGACTTTC..................................................................... 23 1 3 0.33 1 0 1 0 0 0 0
.................................................................................TATTACCCGAAGGGCAACTTTTTTTCCG............................................................................... 28 0 3 0.33 1 0 1 0 0 0 0
.................................................................................TATTACCCGAAGGGCAACTTTTTTTGGC............................................................................... 28 3 3 0.33 1 1 0 0 0 0 0
.............................................................................TGAGTATTACCCGAAGGGCAACTTGTTT................................................................................... 28 2 3 0.33 1 1 0 0 0 0 0
............................................................................CGGAGTATTACCCGAAGGGCAA.......................................................................................... 22 0 20 0.30 6 3 1 2 0 0 0
..................................................TTTGGTCGAGGGAACGGAGA...................................................................................................................... 20 1 20 0.30 6 6 0 0 0 0 0
..................................................TTCGGTCGAGGGAACGGAGAGT.................................................................................................................... 22 2 20 0.30 6 6 0 0 0 0 0
.................................................TTCTGGTCGAGGGAACGGAGAGTC................................................................................................................... 24 1 20 0.30 6 6 0 0 0 0 0
...................................................GTGGTCGAGGGAACGGAGAG..................................................................................................................... 20 0 20 0.30 6 3 0 3 0 0 0
.................................................TTGTGGTCGAGGGAACGGAGAGTT................................................................................................................... 24 1 20 0.30 6 1 0 2 3 0 0
...................................................GTGGTCGAGGGAACGGAGAGT.................................................................................................................... 21 0 20 0.30 6 0 0 6 0 0 0
..................................................TCTGGTCGAGGGAACGGAGAGTC................................................................................................................... 23 1 20 0.25 5 4 0 0 1 0 0
..................................................TTTTGTCGAGGGAACGGAGAGTC................................................................................................................... 23 2 20 0.25 5 5 0 0 0 0 0
.................................................TGGTGGTCGAGGGAACGGAGAGC.................................................................................................................... 23 2 20 0.25 5 5 0 0 0 0 0
................................................GGTGTGGTCGAGGGAACGGAGAGT.................................................................................................................... 24 1 20 0.25 5 5 0 0 0 0 0
............................................................................CGGAGTATTACCCGAAGGGCAACC........................................................................................ 24 1 20 0.25 5 5 0 0 0 0 0
..................................................TGCGGTCGAGGGAACGGAGAGC.................................................................................................................... 22 2 20 0.25 5 5 0 0 0 0 0
.............................................................................GGAGTATTACCCGAAGGGCAACT........................................................................................ 23 0 20 0.25 5 5 0 0 0 0 0
..................................................................................ATTACCCGAAGGGCAACTTTTT.................................................................................... 22 0 4 0.25 1 1 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGGA........................................................................................................................ 18 0 20 0.25 5 5 0 0 0 0 0
................................................................................GTATTACCCGAAGGGCAACTTTTTTAT................................................................................. 27 2 4 0.25 1 1 0 0 0 0 0
.................................................................................TATTACCCGAAGGGCAACTTTTTTCC................................................................................. 26 1 4 0.25 1 1 0 0 0 0 0
.................................................TGGTGGTCGAGGGAACGGAGA...................................................................................................................... 21 1 20 0.20 4 4 0 0 0 0 0
............................................................................CGGAGTATTACCCGAAGGGCAACTT....................................................................................... 25 0 20 0.20 4 4 0 0 0 0 0
.................................................................................TATTACCCGAAGGGCAACT........................................................................................ 19 0 20 0.20 4 4 0 0 0 0 0
...............................................................................................CAACTTTTTTTCCGGGAGACT........................................................................ 21 0 5 0.20 1 0 0 1 0 0 0
............................................................................CGGAGTATTACCCGAAGGG............................................................................................. 19 0 20 0.20 4 2 0 2 0 0 0
..................................................................................................CTTTTTTTCCGGGAGACT........................................................................ 18 0 5 0.20 1 1 0 0 0 0 0
............................................................................CGGAGTATTACCCGAAGGGCAACTTT...................................................................................... 26 0 20 0.20 4 4 0 0 0 0 0
.............................................................................................................................GGTGGCGGGCTCCTGGAGAGAGCAC...................................... 25 1 6 0.17 1 1 0 0 0 0 0
............................................................................CGGAGTATTACCCGAAGGGCAAC......................................................................................... 23 0 20 0.15 3 0 1 2 0 0 0
...........................................................................CCGGAGTATTACCCGAAGGGCAACTT....................................................................................... 26 0 20 0.15 3 0 1 2 0 0 0
................................................GTTGTGGTCGAGGGAACGGAGAGT.................................................................................................................... 24 0 20 0.15 3 0 1 2 0 0 0
............................................................................CGCAGTATTACCCGAAGGGCAAC......................................................................................... 23 1 20 0.15 3 3 0 0 0 0 0
..................................................TCTGGTCGAGGGAACGGAGAGT.................................................................................................................... 22 1 20 0.15 3 3 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGAGGC................................................................................................................... 23 1 20 0.15 3 0 3 0 0 0 0
..................................................TGTGGTCGGGGGAACGGAGAGT.................................................................................................................... 22 1 20 0.15 3 0 0 3 0 0 0
..................................................TGTGGTCGTGGGAACGGAGAG..................................................................................................................... 21 1 20 0.15 3 0 0 3 0 0 0
....................................................TGGTCGAGGGAACGGAGA...................................................................................................................... 18 0 20 0.15 3 3 0 0 0 0 0
.................................................TTGTGGTCGAGGGAACGGA........................................................................................................................ 19 0 20 0.15 3 0 2 1 0 0 0
..........................................................................CCCGGAGTATTACCCGAAGGGCAACC........................................................................................ 26 1 20 0.15 3 3 0 0 0 0 0
..........................................................................CCCGGAGTATTACCCGAAGGGCAACTTT...................................................................................... 28 0 20 0.15 3 3 0 0 0 0 0
.............................................................................GGAGTATTACCCGAAGGGCAACTTT...................................................................................... 25 0 20 0.15 3 2 1 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGCGTC................................................................................................................... 23 1 20 0.15 3 0 3 0 0 0 0
................................................................................GTATTACCCGAAGGGCAACT........................................................................................ 20 0 20 0.15 3 3 0 0 0 0 0
............................................................................CTGAGTATTACCCGAAGGGCA........................................................................................... 21 1 20 0.15 3 3 0 0 0 0 0
............................................................................CTGAGTATTACCCGAAGGGC............................................................................................ 20 1 20 0.15 3 3 0 0 0 0 0
......................................................GTCGAGGGAACGGAGAGTC................................................................................................................... 19 0 20 0.15 3 3 0 0 0 0 0
.......................................................................TCCCCCGGAGTATTACCCGATGGGCAAC......................................................................................... 28 1 9 0.11 1 1 0 0 0 0 0
..............................................................................GAGTATTACCCGAAGGGCAACC........................................................................................ 22 1 20 0.10 2 2 0 0 0 0 0
.................................................TTCTGGTCGAGGGAACGGAGAGT.................................................................................................................... 23 1 20 0.10 2 2 0 0 0 0 0
.............................................................................GTAGTATTACCCGAAGGGCAAC......................................................................................... 22 1 20 0.10 2 2 0 0 0 0 0
...................................................GGGGTCGAGGGAACGGAGAGTC................................................................................................................... 22 1 20 0.10 2 2 0 0 0 0 0
....................................................TTGTCGAGGGAACGGAGAGT.................................................................................................................... 20 1 20 0.10 2 2 0 0 0 0 0
...........................................................................CCGGAGTATTACCCGAAGGGCC........................................................................................... 22 1 20 0.10 2 0 2 0 0 0 0
................................................GTTGTGGTCGAGGGAACGGAGGGT.................................................................................................................... 24 1 20 0.10 2 2 0 0 0 0 0
............................................................................CTGAGTATTACCCGAAGGGCAACC........................................................................................ 24 2 20 0.10 2 2 0 0 0 0 0
.................................................TTGCGGTCGAGGGAACGGAGAGTC................................................................................................................... 24 1 20 0.10 2 2 0 0 0 0 0
.............................................................................GGAGTATTACCCGAAGGGC............................................................................................ 19 0 20 0.10 2 2 0 0 0 0 0
..................................................TGCGGTCGAGGGCACGGAGA...................................................................................................................... 20 2 20 0.10 2 2 0 0 0 0 0
...........................................................................CCGGAGTATTACCCGAAGGG............................................................................................. 20 0 20 0.10 2 1 0 1 0 0 0
..............................................................................GACTATTACCCGAAGGGCAAC......................................................................................... 21 1 20 0.10 2 2 0 0 0 0 0
..................................................TTTGGTCGAGGGAACGGAGTGTC................................................................................................................... 23 2 20 0.10 2 2 0 0 0 0 0
.................................................TTGCGGTCGAGGGAACGGAGAGT.................................................................................................................... 23 1 20 0.10 2 2 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGAT..................................................................................................................... 21 1 20 0.10 2 2 0 0 0 0 0
..................................................TTTGGTCGAGGGAACGGA........................................................................................................................ 18 1 20 0.10 2 2 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGTAGAGTC................................................................................................................... 23 1 20 0.10 2 0 2 0 0 0 0
.................................................GTGTGGTCGAGGGAACGGAGAGTC................................................................................................................... 24 1 20 0.10 2 0 0 2 0 0 0
..................................................TGTGGTCGAGGGAACGGAGC...................................................................................................................... 20 1 20 0.10 2 1 1 0 0 0 0
.................................................TTGTGGTCGAGGGAACGGAGAA..................................................................................................................... 22 1 20 0.10 2 2 0 0 0 0 0
....................................................TGGTCGAGGGAACGGAGAGC.................................................................................................................... 20 1 20 0.10 2 2 0 0 0 0 0
..................................................................................ATTACCCGAAGGGCAACTT....................................................................................... 19 0 20 0.10 2 2 0 0 0 0 0
.................................................TTGTGGTCGAGGGAACGGAGT...................................................................................................................... 21 1 20 0.10 2 2 0 0 0 0 0
..................................................TGTGGTCGATGGAACGGAGAGTC................................................................................................................... 23 1 20 0.10 2 1 1 0 0 0 0
................................................GGTGTGGTCGAGGGAACGG......................................................................................................................... 19 1 20 0.10 2 2 0 0 0 0 0
..........................................................................CCAGGAGTATTACCCGAAGGGCAACT........................................................................................ 26 1 20 0.10 2 2 0 0 0 0 0
...................................................GTGGTCGAGGGAACGGAG....................................................................................................................... 18 0 20 0.10 2 0 0 2 0 0 0
..............................................................................GAGTATTACCCGAAGGGCAACTT....................................................................................... 23 0 20 0.10 2 2 0 0 0 0 0
.................................................TTGTGGTCGAGGGAACGGAGAC..................................................................................................................... 22 1 20 0.10 2 2 0 0 0 0 0
............................................................................CGGTGTATTACCCGAAGGGCAAC......................................................................................... 23 1 20 0.10 2 2 0 0 0 0 0
................................................GTCGTGGTCGAGGGAACGGAGAGTC................................................................................................................... 25 1 20 0.10 2 2 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGCG..................................................................................................................... 21 1 20 0.10 2 0 1 0 0 0 1
...........................................................................CCGGAGTATTACCCGAAGGGGC........................................................................................... 22 2 20 0.10 2 0 2 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAGAGCC................................................................................................................... 23 1 20 0.10 2 1 0 1 0 0 0
..................................................TGTGGTCGAGGGAACGGAGT...................................................................................................................... 20 1 20 0.10 2 1 0 0 1 0 0
...........................................................................CGGGAGTATTACCCGAAGGGCAACTT....................................................................................... 26 1 20 0.10 2 2 0 0 0 0 0
.................................................TTCTGGTCGAGGGAACGGAGAG..................................................................................................................... 22 1 20 0.10 2 2 0 0 0 0 0
................................................................................GGATTACCCGAAGGGCAACT........................................................................................ 20 1 20 0.10 2 2 0 0 0 0 0
................................................GGTGTGGTCGAGGGAACGGAGAGC.................................................................................................................... 24 2 20 0.10 2 2 0 0 0 0 0
...........................................................................CCGGAGTATTACCCGAAGGGCAACTTT...................................................................................... 27 0 20 0.10 2 1 0 1 0 0 0
...................................................GTGGTCGAGGGAACGGAGAGTA................................................................................................................... 22 1 20 0.10 2 1 0 1 0 0 0
..................................................TTCGGTCGAGGGAACGGAGAGC.................................................................................................................... 22 3 20 0.10 2 2 0 0 0 0 0
.............................................................................GGAGTATTACCCGAAGGGCAACTT....................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0
..................................................TGCTGTCGAGGGAACGGAGAGT.................................................................................................................... 22 2 20 0.10 2 2 0 0 0 0 0
.................................................................................TATTACCCGATGGGCAACTTTTTTT.................................................................................. 25 1 11 0.09 1 0 1 0 0 0 0
................................................................................GTATTACCCGATGGGCAACTTTTTT................................................................................... 25 1 11 0.09 1 0 1 0 0 0 0
...........................................................................................TGGGCAACTTTTTTTCCGGGA............................................................................ 21 1 11 0.09 1 0 1 0 0 0 0
.......................................................................TCCCCCGGAGTATTACCCAAATGGCAAC......................................................................................... 28 2 18 0.06 1 1 0 0 0 0 0
..................................................CTTGGTCGAGGGAACGGAGAG..................................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0
..................................................TGTTGTCGAGTGAACGGAGAGTC................................................................................................................... 23 2 20 0.05 1 0 1 0 0 0 0
.................................................TTGTGGTCGTGGGAACGGAGAGT.................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0
..............................................................................GGGTATTACCCGAAGGGCAAC......................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0
..................................................TGAGGTCGAGGGGACGGAGAGTC................................................................................................................... 23 2 20 0.05 1 0 1 0 0 0 0
.................................................TTGTGGTTGAGGGAACGGAGAGTC................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
............................................................................CGCAGTATTACCCGAAGGGCAACT........................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0
.................................................TTGTGGTCGAGGGAACGGTTT...................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
..............................................................................GACTATTACCCGAAGGGCAACC........................................................................................ 22 2 20 0.05 1 1 0 0 0 0 0
...........................................................................TCGGAGTATTACCCGAAGGGC............................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0
..................................................TGTGGTCGAGCGAACTGAGAGTC................................................................................................................... 23 2 20 0.05 1 0 1 0 0 0 0
..........................................................................CCCGGAGTATTACCCGAAGG.............................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0
.............................................................................GTAGTATTACCCGAAGGGCAACTTTT..................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
............................................................................AGGAGTATTACCCGAAGGGC............................................................................................ 20 1 20 0.05 1 0 0 1 0 0 0
..................................................TGTGGTCGAGGGAACGGAGGGC.................................................................................................................... 22 2 20 0.05 1 1 0 0 0 0 0
............................................................................CGGAGTATTACCCGAAGGGCAACTTTT..................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
................................................................................GTATTACCCGAAGGGCAAC......................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
...........................................................................CCCGAGTATTACCCGAAGGGC............................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0
..................................................TGCTGTCGAGGGAACGGAGAGTC................................................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0
..................................................GTTGGTCGAGGGAACGGAGAGTC................................................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0
.............................................................................GTAGTATTACCCGAAGGGC............................................................................................ 19 1 20 0.05 1 1 0 0 0 0 0
................................................GTTGTGGACGAGGGAACGGAGAGT.................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
..................................................TGTGGTCGAGGGCACGGAGAA..................................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0
..................................................TTTGGTCGAGGGACCGGAGAGTC................................................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0
...............................................................................AGTATTACCCGAAGGGCAACT........................................................................................ 21 0 20 0.05 1 0 1 0 0 0 0
..................................................TGTGGTAGAGGGTACGGAGAGC.................................................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0
.............................................................................GTAGTATTACCCGAAGGGCAA.......................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0
.................................................TGGAGGTCGAGGGAACGGAGAGTC................................................................................................................... 24 2 20 0.05 1 1 0 0 0 0 0
............................................................................CTGAGTATTACCCGAAGGGCAACTT....................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
..................................................TGTGGTCGCGGGAACGGAGAGT.................................................................................................................... 22 1 20 0.05 1 0 0 1 0 0 0
..............................................................................GAGTATTACCAGAAGGGCAAC......................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0
..................................................TTTGGTCGCGGGAACGGAGAGTC................................................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0
..................................................TGTGGTCGAGGGAATGGAGAGTC................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0
.................................................TGGTGGTCGAGGGAACAGAGAG..................................................................................................................... 22 2 20 0.05 1 1 0 0 0 0 0
...........................................................................CCGGAGTATGACCCGAAGGGC............................................................................................ 21 1 20 0.05 1 0 1 0 0 0 0
.................................................TTGGGGTCGAGGGAACGGAGAGT.................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0
..................................................TCTGGTCGAGGGAACGGAGAG..................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0
..........................................................................CCAGGAGTATTACCCGAAGGGCAAC......................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
.................................................TGGTGGTCGAGGGAACGGTGAGT.................................................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0
.................................................TTGTGGTCGAGGGTAAGGAGA...................................................................................................................... 21 2 20 0.05 1 0 1 0 0 0 0
..................................................TGTGGTCGAGGGAACGGGGAGTT................................................................................................................... 23 2 20 0.05 1 0 1 0 0 0 0
.................................................TTGTGGTCGAGGAAACGGAGAGTC................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGGAAA...................................................................................................................... 20 1 20 0.05 1 0 0 1 0 0 0
..........................................................................CGCGGAGTATTACCCGAAGGGCAACTT....................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
..................................................TGTGGTCGAGGGAACGCACAGTC................................................................................................................... 23 2 20 0.05 1 0 1 0 0 0 0
..................................................................................ATCACCCGAAGGGCAACTTTT..................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0
.............................................................................GTAGTATTACCCGAAGGGCAACC........................................................................................ 23 2 20 0.05 1 1 0 0 0 0 0
..................................................TTTGGTCGAGGGAACGGAGAGTG................................................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0
..................................................TTTTGTCGAGGGAACGGAGAG..................................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0
............................................................................CGGAGTATTATCCGAAGGGCAACTT....................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
.................................................GTGTGGTCGAGGGAACGGAGA...................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0
..................................................AGTGGTCGAGGGAACGGAGAGTC................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0
..................................................TGTGGTCGAGGGCACGGAGAGT.................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0
..................................................TTTGGTCAAGGGAACGGAGAGTC................................................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0
.................................................................................TATTACCCGAAGGGCAACTTTT..................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
.................................................TTGTGGTCGAGGGAACGGAT....................................................................................................................... 20 1 20 0.05 1 0 0 0 1 0 0
................................................GGTTTGGTCGAGGGAACGGAGAG..................................................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0
..................................................TGTGGTCGCGGGAACGGAGAGTG................................................................................................................... 23 2 20 0.05 1 0 1 0 0 0 0
..................................................TGTGGTCGACGGAACGGAGAGT.................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0
..................................................TGTGGTCGAGGGCACGGACCGTC................................................................................................................... 23 3 20 0.05 1 0 1 0 0 0 0
...............................................................................AGCATTACCCGAAGGGCAACT........................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0
..................................................TTTGGTCGAGGCAACGGAGAG..................................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0
.................................................TTGTGTTCGAGGGAACGGAG....................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0
..................................................TTTGGTCGAGGGCAGGGAGAGTC................................................................................................................... 23 3 20 0.05 1 1 0 0 0 0 0
............................................................................CGGAGTATTACCCGAAGCGCAACTT....................................................................................... 25 1 20 0.05 1 0 0 1 0 0 0
.................................................................................TACTACCCGAAGGGCAACTTT...................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0
...............................................................................AGTATTACCCGAAGGGCAA.......................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
....................................................TCGTCGAGGGAACGGAGAGTC................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0
..................................................CGTGGTCGAGGGAACGGAGAGTC................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
..................................................GGTGGTCGAGGGAACGGAGAGT.................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0
..................................................TGTGGTCGAGGGAGCGGAGAGT.................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0
..................................................ATTGGTCGAGGGAACGGAGAGTC................................................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

AAAACCCGACTTAAATTCGTGTCAGAAGAAAAGAGGTCCCGGGTTCATCAACACCAGCTCCCTTGCCTCTCAGGGGGCCTCATAATGGGCTTCCCGTTGAAAAAAAGGCCCTCTGAAAGGTGTAGTCACCGCCCGAGGACCTCTCTCGTGAAAGAGGACCACAAAAAAAAACCCCAGCAGCCCTGAGT
**************************************************************************....................((...((((..((((((.((((((........)))..)))..)))))).))))....))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V055
head
...................................................CACCAGCTCCCTTGCCTCTCA.................................................................................................................... 21 0 20 6.25 125 77 40 8 0
..................................................ACACCAGCTCCCTTGCCTCTC..................................................................................................................... 21 0 20 2.70 54 30 24 0 0
.................................................................CCTCTCAGGGGGCCGCAGAAT...................................................................................................... 21 2 1 1.00 1 0 0 1 0
..................................................ACACCAGCTCCCTTGCCTCTCAGGAGGC.............................................................................................................. 28 1 1 1.00 1 0 1 0 0
.........................................................CTCCCTTGCCTCTCAGGGGGCCT............................................................................................................ 23 0 1 1.00 1 0 1 0 0
...................................................CACCAGCTCCCTTGCCTCTCATG.................................................................................................................. 23 1 1 1.00 1 1 0 0 0
.............................................................................................................................................................ACCACAGCACAAAACCCCAGCA......... 22 3 1 1.00 1 1 0 0 0
.............................................................................................................................................................ACCACAAAAAAAAACCGCTGC.......... 21 2 1 1.00 1 1 0 0 0
....................................................ACCAGCTCCCTTGCCTCTCAG................................................................................................................... 21 0 20 0.65 13 0 13 0 0
...................................................CACCAGCTCCCTTGCCTCTC..................................................................................................................... 20 0 20 0.60 12 7 3 2 0
................................................CAACACCAGCTCCCTTGCCTC....................................................................................................................... 21 0 20 0.60 12 5 7 0 0
.................................................AACACCAGCTCCCTTGCCTCT...................................................................................................................... 21 0 20 0.55 11 7 4 0 0
.............................................................................................................................................................ACCACAAAAAAAAACCGCA............ 19 1 2 0.50 1 1 0 0 0
.......................................................................................................................................................CAGAGGACCACCAAAAAAAA................. 20 2 3 0.33 1 1 0 0 0
..............ATTCGAGGCAGAAGAAAAG........................................................................................................................................................... 19 2 3 0.33 1 0 1 0 0
..........................................................................................TTCCCGTTGAAAAAAAGGCCC............................................................................. 21 0 3 0.33 1 1 0 0 0
..............................................................................................................................CAGCTCCCGCGGACCTCTCTC......................................... 21 3 3 0.33 1 0 0 1 0
............................................................................................CCCGTTGAAAAAAAGGCCCT............................................................................ 20 0 3 0.33 1 1 0 0 0
..........................................................................................TTCCCGTTGAATAAAAGGCGC............................................................................. 21 2 3 0.33 1 1 0 0 0
...........................................................................................TCCCGTTGAAAAAAAGGCCCTCT.......................................................................... 23 0 3 0.33 1 1 0 0 0
..................................................ACACCAGCTCCCTTGCCTCTCA.................................................................................................................... 22 0 20 0.30 6 3 3 0 0
.................................................AACACCAGCTCCCTTGCCTCTC..................................................................................................................... 22 0 20 0.25 5 3 1 1 0
................................................CAACACCAGCTCCCTTGCCTCT...................................................................................................................... 22 0 20 0.25 5 2 3 0 0
................................................................................................................................................................ACAAAAAAAAACCACAGCAGT....... 21 2 4 0.25 1 1 0 0 0
..................................................ACACCAGCTCCCTTGCCTCT...................................................................................................................... 20 0 20 0.25 5 0 3 2 0
...............................................................................................GTTGAAAAAAAGGCCCTCTGA........................................................................ 21 0 5 0.20 1 1 0 0 0
.................................................AACACCAGCTCCCTTGCCTCTCA.................................................................................................................... 23 0 20 0.20 4 1 3 0 0
...........................................................................GGCCTCATAATGGGCTTCCCGTT.......................................................................................... 23 0 20 0.20 4 0 0 4 0
.....................................................CCAGCTCCCTTGCCTCTCAG................................................................................................................... 20 0 20 0.20 4 2 2 0 0
.....................................................................................TGGGCTTCCCGTTGCAATAAG.................................................................................. 21 3 5 0.20 1 1 0 0 0
..............................................................................................................................................................CCACAAAAAAACACCCCACCA......... 21 2 5 0.20 1 1 0 0 0
....................................................ACCAGCTCCCTTGCCTCTCA.................................................................................................................... 20 0 20 0.20 4 2 1 1 0
........................................................................................GCTTACCGTTGAAAAAAAGGCCCTCT.......................................................................... 26 1 5 0.20 1 1 0 0 0
...............................................................................................................................................................CACAAGAAAAAACCACAGCA......... 20 2 6 0.17 1 1 0 0 0
...................................................CACCAGCTCCCTGGCCTCTCA.................................................................................................................... 21 1 20 0.15 3 0 3 0 0
...................................................................................................................................CCCGAGGACCTCTCTCGTGA..................................... 20 0 20 0.15 3 0 3 0 0
................................................CAACACCAGCTCCCTTGCC......................................................................................................................... 19 0 20 0.15 3 2 0 1 0
.............................................................................................................................................................ACCACACCAAAAAACCCCATCA......... 22 3 7 0.14 1 1 0 0 0
..............................................................TTGGCAGTCAGGGGGCCTC........................................................................................................... 19 3 9 0.11 1 0 0 1 0
............................................................................GCCTCATAATGGGCTTCCCGT........................................................................................... 21 0 20 0.10 2 0 0 2 0
................................................CAACACCAGCTCCCTTGCCTCTC..................................................................................................................... 23 0 20 0.10 2 0 2 0 0
.............................................................................CCTCATAATGGGCTTCCCGTT.......................................................................................... 21 0 20 0.10 2 2 0 0 0
..................................................ACACCAGCTCCCTTGCCTC....................................................................................................................... 19 0 20 0.10 2 1 0 1 0
.....................................................CCAGCTCCCTTGCCTCTCA.................................................................................................................... 19 0 20 0.10 2 2 0 0 0
.................................................AACACCAGCTCCCTTGCCTC....................................................................................................................... 20 0 20 0.10 2 1 1 0 0
.............................................................................................................................................................ACCACAAAAAAAAACCGAAGTAG........ 23 3 10 0.10 1 1 0 0 0
...................................................CACCAGCTCCCTTGCCTTTCA.................................................................................................................... 21 1 20 0.10 2 2 0 0 0
....................................................................................ATGGGCTTCCAGTTTAAATA.................................................................................... 20 3 15 0.07 1 0 0 0 1
.......................................................................................................................................................AGGAGGACCACGAAAAAAA.................. 19 2 15 0.07 1 1 0 0 0
...........................................TACATCAACATCAGCTTCCT............................................................................................................................. 20 3 19 0.05 1 0 0 1 0
..........................................................................GGGCCTCATAATGGGCTTCCCGTTG......................................................................................... 25 0 20 0.05 1 0 1 0 0
.................................................................................CTAATGGGCTTCCCGTTGAAAA..................................................................................... 22 1 20 0.05 1 1 0 0 0
.................................................................................ATAATGGGCTTCCCGTGGAAA...................................................................................... 21 1 20 0.05 1 1 0 0 0
...................................................CTCCATCTCCCTTGCCTCTCA.................................................................................................................... 21 2 20 0.05 1 0 0 1 0
...........................................................................GGCCTCATAATGGGCTTCCCGTTG......................................................................................... 24 0 20 0.05 1 0 1 0 0
...................................................CAACAGCTCCCTTGCCTCTCA.................................................................................................................... 21 1 20 0.05 1 1 0 0 0
...................................................CACCAGCTCCCGTGCCTCTC..................................................................................................................... 20 1 20 0.05 1 0 1 0 0
...................................................CACCAGCTCCATTGCCTCTCA.................................................................................................................... 21 1 20 0.05 1 1 0 0 0
....................................................ACCAGCTCCCTTGCCTCTCAT................................................................................................................... 21 1 20 0.05 1 1 0 0 0
.............................................................................CCTCATAATGGGCTTCCCGT........................................................................................... 20 0 20 0.05 1 1 0 0 0
...................................................CACCCGCTCCCTTGCCTCTCA.................................................................................................................... 21 1 20 0.05 1 0 0 1 0
................................................CAACACCAGCTCCCTTGCCT........................................................................................................................ 20 0 20 0.05 1 0 1 0 0
......................................................CAGCTCCCTTGCCTCTCA.................................................................................................................... 18 0 20 0.05 1 1 0 0 0
.................................................................................ATAATGGGCTTCCCGTTGAAAA..................................................................................... 22 0 20 0.05 1 1 0 0 0
.......................................................................................................................................................AAGAGGACAACAAAAAAAA.................. 19 1 20 0.05 1 1 0 0 0
................................................CAACACCAGCTCCCTTGCCGC....................................................................................................................... 21 1 20 0.05 1 1 0 0 0
...................................................CACCCGCTCCCTTGCCGCTCC.................................................................................................................... 21 3 20 0.05 1 0 0 1 0
...................................................CACCAGCTCCCTTGCCTCT...................................................................................................................... 19 0 20 0.05 1 1 0 0 0
...................................................CACCAGCTCCCTTGCCTCTCAG................................................................................................................... 22 0 20 0.05 1 1 0 0 0
...........................................................................GGCCTCATAATGGGCTTCCCGT........................................................................................... 22 0 20 0.05 1 0 0 1 0
..................................................ACACCAGCTCCCTTGCCTCTCGG................................................................................................................... 23 1 20 0.05 1 1 0 0 0
..................................................ACACCAGCTCCCTTGCCTCTCG.................................................................................................................... 22 1 20 0.05 1 0 1 0 0
.................................................CACACCAGCTCCCTTGCCTCTCA.................................................................................................................... 23 1 20 0.05 1 1 0 0 0
..................................................ACACCAGCTCCCATGCCTCTC..................................................................................................................... 21 1 20 0.05 1 0 1 0 0
...........................................................CCCTTGCCTCTCAGCGGGCCTC........................................................................................................... 22 1 20 0.05 1 1 0 0 0
...................................................CACCAGCTCCCTTGCCTATC..................................................................................................................... 20 1 20 0.05 1 1 0 0 0
...........................................................................GGCCTCATAATGGGCTTCCCG............................................................................................ 21 0 20 0.05 1 0 0 1 0
................................................CAACACCAGCTCCCTTGCATC....................................................................................................................... 21 1 20 0.05 1 1 0 0 0
................................................CAACACCAGCTCCCTTGCCTCTCA.................................................................................................................... 24 0 20 0.05 1 0 1 0 0
.................................................................................ATAATGGGCTTCCCGTTGAAA...................................................................................... 21 0 20 0.05 1 0 1 0 0
.............................................................................CCTCATAATGGGCTTCCCGGT.......................................................................................... 21 1 20 0.05 1 1 0 0 0
..........................................................................GGGCCTCATAATGGGCTTCCCGTT.......................................................................................... 24 0 20 0.05 1 0 0 1 0
...................................................CACCATCTCCCTTGCCTCTCA.................................................................................................................... 21 1 20 0.05 1 0 0 1 0
...................................................CACCAGCTCCCTTGCCTCTGA.................................................................................................................... 21 1 20 0.05 1 1 0 0 0
................................................CAACACCAGCTCCCTTGCCTCTCAG................................................................................................................... 25 0 20 0.05 1 1 0 0 0
....................................................ACCAGCTCCCTTACCTCTCA.................................................................................................................... 20 1 20 0.05 1 0 0 1 0
....................................................................................ATGGGCTTCCCGTTGAAAA..................................................................................... 19 0 20 0.05 1 0 1 0 0
..................................................TCACCAGCTCCCTTGCCTCTCA.................................................................................................................... 22 1 20 0.05 1 0 1 0 0
......................................................................................................................................................AAAGAGCCCCACAAAAAAAAG................. 21 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_9311:5879-6066 - dan_253 TTTTGGGC------TGAATTTAA-GCACA-----GTCTTCTTTT-CTCCAGGGCCC----------------AAGTAGTTGTGGTCGAGGG----AACGGAGAGTCC--CCCGGAGTATTACCCGAAGGGCAACTTTTTTTCCGGGAGACTTTCCACATCAGTGGCGGGCTCCTGGAGAGAGC--ACTTTCTCCTGGTGT-TTTTTTTTGGGGTCGT--CGGG-------------------------------------------ACTCA
droBip1 scf7180000393161:9931-10093 - TTTGAGAC------TAGATTTTGAGCTCG-----TGCGGC-TCG-CTCCAGGGCCA----------------ATCGAGGTGTGTGTGAGGAAAACCT-GGAAAGCCC--CCCAGAATATTACCCGAAGGGCAACTTTTTCTCTGGGAGACTTTCCAGTGAAATGGCGGCCTCCAGGAGAGAGGGCACTTTCTC----------------------------------------------------------------------------CT
droKik1 scf7180000302293:10799-10896 - GTGCTTGG-------------GG-GAA---TGT--TTT------TT-----------------------------------------------------TTGGGCCT--CCAGAATCCTTGCCCTGGCCGCGGGTTCTCCCGCGGGTGGATTTCCACATGTGTGGCTGCCACCTGGAG---------------------------------------------------------------------------------------------
droFic1 scf7180000454073:1269337-1269388 - TTTTGGCG-------------GG-GAA---GG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTTTCTTTACTTCTT---------------------------------CTAGGCTCA-GAAAGCAGTTG
droEle1 scf7180000491000:99109-99164 + TTTTGAGC------AAACTTACA-CCACAACATCATTTTAATTT-C----------------------------------------------------------------------------------------------------------------------------------------------------------------TCCA-------------AAAACCCA----------------------------------CTAACT
droRho1 scf7180000762997:9381-9463 - TTTTGCGC-------------AA-AAACC-----GTTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAGGCCTCTG----TAATTTCGCAGGGGGTCACATCGGGTTCTATTCCCTTAAGCACAACTT
droBia1 scf7180000302055:41480-41645 + TTTTATATTTTTCATGAAGTTGA-AGACA---T-AGTTTC-TGA-TTCTGGGGCCTAGCTTCCATTCTTGGAATTTGGGTTTTTGGGGTTTAAGGATAGGAAGGACGATACTAAGTTTTTAATCATGGGATAG----------GAGATGCGTTCCATACCAGGGGCGGGGCCTTTGAGGGAGC----------------------------------------------------------------------------------------
droTak1 scf7180000415234:660-783 - AGGGCCTC------------------------------------------------------------------------------------------------------CAGAATCCTTGCCCTAGCCGCGGGTTCCCCCGCGGGTGGATTTCCACTTAAGTGGCTGCCACCTGGAGTAATGATGTTTTGCGAAGACATTCCTTTTTGGGTTGCAT--TATG-------------------------------------------ACCCA
droEug1 scf7180000409711:3459098-3459099 + TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_41:10936-10972 - CTTTCTTT-------------T------------------------------------------------------------------------------------------------------------------------CGGGT------------------------------------------------------TTTTTTTGGGGATTAT--GG---------------------------------------------GGACT
droYak3 2R:979539-979547 + TCTGGGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droEre2 scaffold_4845:8015950-8015995 + TCCTGGAA-------------AG-AAA---CCT--TTT---------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGATTT-CCTTTTTCGGGATC----------------------------------------------------GTCG
droPer2 scaffold_11:2728004-2728041 - TTTTTCCT-------------G-----TT-----GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTAAACGTTTT--CGGA-------------------------------------------AGTTA
droWil2 scf2_1100000004852:51870-51916 - CCAAATCT-------------GA-ATGTA-----ATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATCGCCGCCA----AAATATTG----------------------------------CAGTTG
droVir3 scaffold_12963:4128364-4128401 - GACTGCTC--------------------------------------------------------------------------------------------------------------------------------TTTTTCCGCGTGACTTTCCACTTCAGTGGC---------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6332:54599-54626 - TATTTATT------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGA--ACAGT--CAGG-------------------------------------------TTTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTTTGGGC------TGAATTTAA-GCACA-----GTCTTCTTTT-CTCCAGGGCCC----------------AAGTAGTTGTGGTCGAGGG----AACGGAGAGTCC--CCCGGAGTATTACCCGAAGGGCAACTTTTTTTCCGGGAGACTTTCCACATCAGTGGCGGGCTCCTGGAGAGAGC--ACTTTCTCCTGGTGT-TTTTTTTTGGGGTCGT--CGGG-------------------------------------------ACTCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................TGTGGTCGAGGG----AACGGAGAGTCC--..................................................................................................................................................................241348.0034803480000
..............................................................................TTGTGGTCGAGGG----AACGGAGAGTCC--..................................................................................................................................................................25133.00330330000
...............................................................................TGTGGTCGAGGG----AACGGAGAGTC.....................................................................................................................................................................232010.1020200202000
.................................................................................TGGTCGAGGG----AACGGAGAGTCC--..................................................................................................................................................................22110.00100100000
................................................................................GTGGTCGAGGG----AACGGAGAGTCC--..................................................................................................................................................................2319.009090000
...............................................................................TGTGGTCGAGGG----AACGGAGAGT......................................................................................................................................................................22206.1012276036091
...............................................................................TGTGGTCGAGGG----AACGGAGAG.......................................................................................................................................................................21205.9511901150040
.................................................................................TGGTCGAGGG----AACGGAGAGTC.....................................................................................................................................................................21203.557104229000
...............................................................................TGTGGTCGAGGG----AACGGAGA........................................................................................................................................................................20203.256504413080
........................................................................................................TCC--CCCGGAGTATTACCCGAAGGGCAAC.........................................................................................................................................2813.003030000
...............................................................................TGTGGTCGAGGG----AACGGAGAGTCC--CCCC..............................................................................................................................................................2812.002002000
.............................................................................GTTGTGGTCGAGGG----AACGGAGAGTCC--..................................................................................................................................................................2612.002020000
...............................................................................TGTGGTCGAGGG----AACGGAGAGTCC--CCC...............................................................................................................................................................2712.002002000
..................................................................................GGTCGAGGG----AACGGAGAGTCC--..................................................................................................................................................................2112.002020000
...................................................................................GTCGAGGG----AACGGAGAGTCC--..................................................................................................................................................................2012.002020000
..............................................................................TTGTGGTCGAGGG----AACGGAGA........................................................................................................................................................................21201.853702411020
..............................................................................TTGTGGTCGAGGG----AACGGAGAGTC.....................................................................................................................................................................24201.80360033021
..............................................................................TTGTGGTCGAGGG----AACGGAGAG.......................................................................................................................................................................22201.65335270100
...............................................................................................................CGGAGTATTACCCGAAGGGCAACT........................................................................................................................................24201.50304222020
...............................................................................TGTGGTCGAGGG----AACGGAGAGTT.....................................................................................................................................................................23201.45297193000
...............................................................................TGTGGTCGAGGG----AACGGAG.........................................................................................................................................................................19201.352717100000
.................................................................................................................GAGTATTACCCGAAGGGCAAC.........................................................................................................................................21201.25253220000
...............................................................................................................CGGAGTATTACCCGAAGGGC............................................................................................................................................20201.202401014000
.............................................................................GTTGTGGTCGAGGG----AACGGAGAGTC.....................................................................................................................................................................25201.05210138000
........................................................................................................TCC--CCCGGAGTATTACCCGAAGGGCAACT........................................................................................................................................2911.001010000
..........................................................................................................C--CCCGGAGTATTACCCGAAGGGCAAC.........................................................................................................................................2611.001010000
....................................................................................TCGAGGG----AACGGAGAGTCC--..................................................................................................................................................................1911.001010000
.................................................................................TGGTCGAGGG----AACGGAGAGT......................................................................................................................................................................20200.90180171000
................................................................................GTGGTCGAGGG----AACGGAGAGTC.....................................................................................................................................................................22200.90180180000
..............................................................................................................CCGGAGTATTACCCGAAGGGC............................................................................................................................................21200.85175011001
..............................................................................................................CCGGAGTATTACCCGAAGGGCAACT........................................................................................................................................25200.85173130010
...............................................................................................................CGGAGTATTACCCGAAGGGCA...........................................................................................................................................21200.85176101000
.............................................................................................................CCCGGAGTATTACCCGAAGGGCAACT........................................................................................................................................26200.75150150000
....................................................................................................................TATTACCCGAAGGGCAACTTTTTTTCC................................................................................................................................2730.672020000
.............................................................................................................CCCGGAGTATTACCCGAAGGGCAAC.........................................................................................................................................25200.65130130000
..............................................................................................................CCGGAGTATTACCCGAAGGGCAAC.........................................................................................................................................24200.65130130000
.................................................................................................................GAGTATTACCCGAAGGGCAACT........................................................................................................................................22200.5010145000
.............................................................................GTTGTGGTCGAGGG----AACGGAGAG.......................................................................................................................................................................23200.459360000
.............................................................................GTTGTGGTCGAGGG----AACGGAG.........................................................................................................................................................................21200.459810000
..............................................................................TTGTGGTCGAGGG----AACGGAG.........................................................................................................................................................................20200.459801000
...............................................................................TGTGGTCGAGGG----AACGGAGAC.......................................................................................................................................................................21200.459090000
....................................................................................................................TATTACCCGAAGGGCAACTTT......................................................................................................................................21200.357070000
...................................................................................................................GTATTACCCGAAGGGCAACTT.......................................................................................................................................21200.357700000
..............................................................................................................CCGGAGTATTACCCGAAGGGCAACC........................................................................................................................................25200.357070000
....................................................................................TCGAGGG----AACGGAGAGTC.....................................................................................................................................................................18200.357070000
...........................................................................................................................CGAAGGGCAACTTTTTTTCCGG..............................................................................................................................2230.331001000
....................................................................................................................TATTACCCGAAGGGCAACTTTTTTT..................................................................................................................................2530.331010000
....................................................................................................................TATTACCCGAAGGGCAACTTTTTTTCCG...............................................................................................................................2830.331001000
....................................................................................................................TATTACCCGAAGGGCAACTTTTTTTGGC...............................................................................................................................2830.331010000
...............................................................................................................CGGAGTATTACCCGAAGGGCAA..........................................................................................................................................22200.306231000
................................................................................GTGGTCGAGGG----AACGGAGAG.......................................................................................................................................................................20200.306330000
..............................................................................TTGTGGTCGAGGG----AACGGAGAGTT.....................................................................................................................................................................24200.306210030
................................................................................GTGGTCGAGGG----AACGGAGAGT......................................................................................................................................................................21200.306600000
...............................................................................................................CGGAGTATTACCCGAAGGGCAACC........................................................................................................................................24200.255050000
................................................................................................................GGAGTATTACCCGAAGGGCAACT........................................................................................................................................23200.255050000
.....................................................................................................................ATTACCCGAAGGGCAACTTTTT....................................................................................................................................2240.251010000
...............................................................................TGTGGTCGAGGG----AACGGA..........................................................................................................................................................................18200.255050000
...................................................................................................................GTATTACCCGAAGGGCAACTTTTTTAT.................................................................................................................................2740.251010000
...............................................................................................................CGGAGTATTACCCGAAGGGCAACTT.......................................................................................................................................25200.204040000
....................................................................................................................TATTACCCGAAGGGCAACT........................................................................................................................................19200.204040000
..................................................................................................................................CAACTTTTTTTCCGGGAGACT........................................................................................................................2150.201100000
...............................................................................................................CGGAGTATTACCCGAAGGG.............................................................................................................................................19200.204220000
.....................................................................................................................................CTTTTTTTCCGGGAGACT........................................................................................................................1850.201010000
...............................................................................................................CGGAGTATTACCCGAAGGGCAACTTT......................................................................................................................................26200.204040000
...............................................................................................................CGGAGTATTACCCGAAGGGCAAC.........................................................................................................................................23200.153201000
..............................................................................................................CCGGAGTATTACCCGAAGGGCAACTT.......................................................................................................................................26200.153201000
.............................................................................GTTGTGGTCGAGGG----AACGGAGAGT......................................................................................................................................................................24200.153201000
.................................................................................TGGTCGAGGG----AACGGAGA........................................................................................................................................................................18200.153030000
..............................................................................TTGTGGTCGAGGG----AACGGA..........................................................................................................................................................................19200.153102000
.............................................................................................................CCCGGAGTATTACCCGAAGGGCAACC........................................................................................................................................26200.153030000
.............................................................................................................CCCGGAGTATTACCCGAAGGGCAACTTT......................................................................................................................................28200.153030000
................................................................................................................GGAGTATTACCCGAAGGGCAACTTT......................................................................................................................................25200.153021000
...................................................................................................................GTATTACCCGAAGGGCAACT........................................................................................................................................20200.153030000
...................................................................................GTCGAGGG----AACGGAGAGTC.....................................................................................................................................................................19200.153030000
.................................................................................................................GAGTATTACCCGAAGGGCAACC........................................................................................................................................22200.102020000
..............................................................................................................CCGGAGTATTACCCGAAGGGCC...........................................................................................................................................22200.102002000
................................................................................................................GGAGTATTACCCGAAGGGC............................................................................................................................................19200.102020000
..............................................................................................................CCGGAGTATTACCCGAAGGG.............................................................................................................................................20200.102110000
...............................................................................TGTGGTCGAGGG----AACGGAGAT.......................................................................................................................................................................21200.102020000
...............................................................................TGTGGTCGAGGG----AACGGAGC........................................................................................................................................................................20200.102011000
..............................................................................TTGTGGTCGAGGG----AACGGAGAA.......................................................................................................................................................................22200.102020000
.................................................................................TGGTCGAGGG----AACGGAGAGC......................................................................................................................................................................20200.102020000
.....................................................................................................................ATTACCCGAAGGGCAACTT.......................................................................................................................................19200.102020000
..............................................................................TTGTGGTCGAGGG----AACGGAGT........................................................................................................................................................................21200.102020000
................................................................................GTGGTCGAGGG----AACGGAG.........................................................................................................................................................................18200.102200000
.................................................................................................................GAGTATTACCCGAAGGGCAACTT.......................................................................................................................................23200.102020000
..............................................................................TTGTGGTCGAGGG----AACGGAGAC.......................................................................................................................................................................22200.102020000
..............................................................................................................CCGGAGTATTACCCGAAGGGGC...........................................................................................................................................22200.102002000
...............................................................................TGTGGTCGAGGG----AACGGAGT........................................................................................................................................................................20200.102010010
..............................................................................................................CCGGAGTATTACCCGAAGGGCAACTTT......................................................................................................................................27200.102110000
................................................................................GTGGTCGAGGG----AACGGAGAGTA.....................................................................................................................................................................22200.102110000
................................................................................................................GGAGTATTACCCGAAGGGCAACTT.......................................................................................................................................24200.102020000
..............................................................................TTGTGGTCGAGGG----AACGGTTT........................................................................................................................................................................21200.051010000
.............................................................................................................CCCGGAGTATTACCCGAAGG..............................................................................................................................................20200.051010000
...............................................................................................................CGGAGTATTACCCGAAGGGCAACTTTT.....................................................................................................................................27200.051010000
...................................................................................................................GTATTACCCGAAGGGCAAC.........................................................................................................................................19200.051010000
..................................................................................................................AGTATTACCCGAAGGGCAACT........................................................................................................................................21200.051001000
....................................................................................................................TATTACCCGAAGGGCAACTTTT.....................................................................................................................................22200.051010000
..............................................................................TTGTGGTCGAGGG----AACGGAT.........................................................................................................................................................................20200.051000010
..................................................................................................................AGTATTACCCGAAGGGCAA..........................................................................................................................................19200.051010000
droBip1
TTTGAGAC------TAGATTTTGAGCTCG-----TGCGGC-TCG-CTCCAGGGCCA----------------ATCGAGGTGTGTGTGAGGAAAACCT-GGAAAGCCC--CCCAGAATATTACCCGAAGGGCAACTTTTTCTCTGGGAGACTTTCCAGTGAAATGGCGGCCTCCAGGAGAGAGGGCACTTTCTC----------------------------------------------------------------------------CTSizeHit CountTotal NormTotal
No Reads
droKik1
GTGCTTGG-------------GG-GAA---TGT--TTT------TT-----------------------------------------------------TTGGGCCT--CCAGAATCCTTGCCCTGGCCGCGGGTTCTCCCGCGGGTGGATTTCCACATGTGTGGCTGCCACCTGGAG---------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTTTGGCG-------------GG-GAA---GG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTTTCTTTACTTCTT---------------------------------CTAGGCTCA-GAAAGCAGTTGSizeHit CountTotal NormTotal
No Reads
droEle1
TTTTGAGC------AAACTTACA-CCACAACATCATTTTAATTT-C----------------------------------------------------------------------------------------------------------------------------------------------------------------TCCA-------------AAAACCCA----------------------------------CTAACTSizeHit CountTotal NormTotal
No Reads
droRho1
TTTTGCGC-------------AA-AAACC-----GTTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAGGCCTCTG----TAATTTCGCAGGGGGTCACATCGGGTTCTATTCCCTTAAGCACAACTTSizeHit CountTotal NormTotal
No Reads
droBia1
TTTTATATTTTTCATGAAGTTGA-AGACA---T-AGTTTC-TGA-TTCTGGGGCCTAGCTTCCATTCTTGGAATTTGGGTTTTTGGGGTTTAAGGATAGGAAGGACGATACTAAGTTTTTAATCATGGGATAG----------GAGATGCGTTCCATACCAGGGGCGGGGCCTTTGAGGGAGC----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGGGCCTC------------------------------------------------------------------------------------------------------CAGAATCCTTGCCCTAGCCGCGGGTTCCCCCGCGGGTGGATTTCCACTTAAGTGGCTGCCACCTGGAGTAATGATGTTTTGCGAAGACATTCCTTTTTGGGTTGCAT--TATG-------------------------------------------ACCCASizeHit CountTotal NormTotal
No Reads
droEug1
TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droSec2
CTTTCTTT-------------T------------------------------------------------------------------------------------------------------------------------CGGGT------------------------------------------------------TTTTTTTGGGGATTAT--GG---------------------------------------------GGACTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TCTGGGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TCCTGGAA-------------AG-AAA---CCT--TTT---------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGATTT-CCTTTTTCGGGATC----------------------------------------------------GTCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droPer2
TTTTTCCT-------------G-----TT-----GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTAAACGTTTT--CGGA-------------------------------------------AGTTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CCAAATCT-------------GA-ATGTA-----ATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATCGCCGCCA----AAATATTG----------------------------------CAGTTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GACTGCTC--------------------------------------------------------------------------------------------------------------------------------TTTTTCCGCGTGACTTTCCACTTCAGTGGC---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TATTTATT------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGA--ACAGT--CAGG-------------------------------------------TTTTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/15/2015 at 03:10 PM